CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032485	Neokomagataea tanensis strain AH13 = NBRC 106556 chromosome, complete genome	0 crisprs	DinG,csa3	0	0	3	0
NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	1 crisprs	cas5f,cas7f,cas1,cas3f	0	9	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1375106 : 1396207

Leptospira_phage(33.33%)

integrase,transposase

attL 1371354:1371367|attR 1389621:1389634

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1371354:1371367	attL	NA	NA	NA	NA
WP_141492755.1\|1375106_1376069_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.1e-17	28.7
WP_141492756.1\|1376110_1378351_+	primosomal protein N'	NA	NA	NA	NA
WP_141492757.1\|1378391_1379699_+	hypothetical protein	NA	NA	NA	NA
WP_141492758.1\|1379710_1381393_-	alginate export family protein	NA	NA	NA	NA
WP_141492759.1\|1381522_1382110_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	2.0e-19	33.3
WP_141492760.1\|1382200_1384786_+	MMPL family transporter	NA	NA	NA	NA
WP_141492761.1\|1385402_1386110_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.6e-89	64.8
WP_141492762.1\|1386933_1388037_+	DUF4172 domain-containing protein	NA	NA	NA	NA
WP_141492763.1\|1388246_1389623_-\|transposase	transposase	NA	NA	NA	NA
WP_141492764.1\|1389933_1390860_-	hypothetical protein	NA	NA	NA	NA
1389621:1389634	attR	NA	NA	NA	NA
WP_170211057.1\|1391534_1392248_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_141492766.1\|1392727_1393453_-	hypothetical protein	NA	NA	NA	NA
WP_141492767.1\|1393449_1393680_-	hypothetical protein	NA	NA	NA	NA
WP_141492768.1\|1393676_1394434_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141492768.1\|1395450_1396207_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

2364867 : 2375633

Pseudomonas_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493630.1\|2364867_2365899_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.2e-35	39.2
WP_141493955.1\|2365895_2366666_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_141493631.1\|2366805_2367291_-	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	7.1e-18	41.0
WP_141493632.1\|2367280_2369146_-	transglycosylase SLT domain-containing protein	K4NWI2	Pseudomonas_phage	3.1e-13	34.6
WP_141493956.1\|2369162_2369744_-	YjbE family putative metal transport protein	A0A2R2YAT9	Pseudomonas_phage	1.1e-12	35.2
WP_141493633.1\|2369864_2371196_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.9e-18	33.7
WP_141493634.1\|2371347_2372112_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	2.2e-45	44.8
WP_141493635.1\|2372108_2372351_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_141493636.1\|2372347_2372734_+	hypothetical protein	NA	NA	NA	NA
WP_141493637.1\|2372730_2373432_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_141493638.1\|2373428_2375633_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.0e-160	42.6

DBSCAN-SWA_3

2394719 : 2405786

Burkholderia_virus(33.33%)

integrase,transposase

attL 2399163:2399179|attR 2414749:2414765

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493657.1\|2394719_2395760_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_141493658.1\|2395756_2398015_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_141493957.1\|2398372_2398702_-\|transposase	transposase	Q8W6R2	Burkholderia_virus	6.2e-34	66.0
WP_170211090.1\|2398584_2398845_-	hypothetical protein	A0A0N7C1X7	Escherichia_phage	1.4e-12	70.2
WP_141493958.1\|2398936_2399086_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.5e-07	57.1
WP_141493660.1\|2399105_2399570_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A077SL39	Escherichia_phage	1.9e-36	43.1
2399163:2399179	attL	NA	NA	NA	NA
WP_141493661.1\|2399895_2402178_+	ATP-binding cassette domain-containing protein	A0A1B1IVR3	uncultured_Mediterranean_phage	5.0e-98	35.6
WP_141493662.1\|2402271_2402679_-	response regulator	NA	NA	NA	NA
WP_141493663.1\|2402680_2405047_-	PAS domain-containing protein	NA	NA	NA	NA
WP_141493664.1\|2405567_2405786_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0P0I4A4	Acinetobacter_phage	4.3e-15	56.7
2414749:2414765	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP032486

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032486_1

79849-80413

Unclear

Consensus_repeat	Method
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	CRISPRCasFinder
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	CRT
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	PILER-CR

9 spacers

cas3f,cas1,cas7f,cas5f

The CRISPR arrays of NZ_CP032486_1

>merge|NZ_CP032486|1|79849-80413|CRISPRCasFinder,CRT,PILER-CR
GCTCCCCGCCGGGTAGGCGGCTGAGAGATTCAAGATCGCCGGAATTGGGACGAGCAGCACGCTCCCCGCCGGGTAGGCGGCTGAGAGATCGGATACGCCGCTAAAAGTTTTAAAGCTATAGCTCCCCGCCGGGTAGGCGGCTGAGAGAGATTGAAGATCAGGGCGTTTTACAGTCTGGCAGCTCCCCGCCGGGTAGGCGGCTGAGAGATTAAGTCTGGAGCGGTGCTGTCCTTACACATTGCTCCCCGCCGGGTAGGCGGCTGAGAGAAAACAGAGACATCAGACGGCAAAGGTTCAATCGCTCCCCGCCGGGTAGGCGGCTGAGAGAAAAATTCAGGAAATAAACAATGACAGCCCCTAGCTCCCCGCCGGGTAGGCGGCTGAGAGAAATAATAATAGCTCTTTTACGCCAGTTCTGTAGCTCCCCGCCGGGTAGGCGGCTGAGAGATCAACAGACGGGGCAGGAGGCGGGCCAACGCTTCCCGCCGGGTAGGCGGCTGAGAGATGAACATCAGCGGACAATTCGTTGGCGAACTGGCTCCCCGCCGGGTAGGCGGCTGAGAGA

>NZ_CP032486|1|1|79849-80413|CRISPRCasFinder
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TTCAAGATCGCCGGAATTGGGACGAGCAGCAC
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TCGGATACGCCGCTAAAAGTTTTAAAGCTATA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	GATTGAAGATCAGGGCGTTTTACAGTCTGGCA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TTAAGTCTGGAGCGGTGCTGTCCTTACACATT
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AAACAGAGACATCAGACGGCAAAGGTTCAATC
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AAAATTCAGGAAATAAACAATGACAGCCCCTA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AATAATAATAGCTCTTTTACGCCAGTTCTGTA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TCAACAGACGGGGCAGGAGGCGGGCCAAC
GCTTCCCGCCGGGTAGGCGGCTGAGAGA	TGAACATCAGCGGACAATTCGTTGGCGAACTG
GCTCCCCGCCGGGTAGGCGGCTGAGAGA

>NZ_CP032486|1|1|79849-80413|CRT
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TTCAAGATCGCCGGAATTGGGACGAGCAGCAC
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TCGGATACGCCGCTAAAAGTTTTAAAGCTATA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	GATTGAAGATCAGGGCGTTTTACAGTCTGGCA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TTAAGTCTGGAGCGGTGCTGTCCTTACACATT
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AAACAGAGACATCAGACGGCAAAGGTTCAATC
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AAAATTCAGGAAATAAACAATGACAGCCCCTA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AATAATAATAGCTCTTTTACGCCAGTTCTGTA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TCAACAGACGGGGCAGGAGGCGGGCCAAC
GCTTCCCGCCGGGTAGGCGGCTGAGAGA	TGAACATCAGCGGACAATTCGTTGGCGAACTG
GCTCCCCGCCGGGTAGGCGGCTGAGAGA

>NZ_CP032486|1|1|79909-80413|PILER-CR
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TCGGATACGCCGCTAAAAGTTTTAAAGCTATA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	GATTGAAGATCAGGGCGTTTTACAGTCTGGCA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TTAAGTCTGGAGCGGTGCTGTCCTTACACATT
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AAACAGAGACATCAGACGGCAAAGGTTCAATC
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AAAATTCAGGAAATAAACAATGACAGCCCCTA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	AATAATAATAGCTCTTTTACGCCAGTTCTGTA
GCTCCCCGCCGGGTAGGCGGCTGAGAGA	TCAACAGACGGGGCAGGAGGCGGGCCAAC
GCTTCCCGCCGGGTAGGCGGCTGAGAGA	TGAACATCAGCGGACAATTCGTTGGCGAACTG
GCTCCCCGCCGGGTAGGCGGCTGAGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032486.1\|WP_141494019.1\|70060_71095_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP032486.1\|WP_141494026.1\|81266_81869_-\|CdiI-family-contact-dependent-growth-inhibition-immunity-protein	unknown	unknown	gnl\|CDD\|259838
NZ_CP032486.1\|WP_141494022.1\|73708_74791_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|187868
NZ_CP032486.1\|WP_068173535.1\|68539_68914_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032486.1\|WP_141494032.1\|87778_88492_-\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP032486.1\|WP_141494034.1\|96943_97141_+\|HVA1-family-protein	unknown	unknown	gnl\|CDD\|378576
NZ_CP032486.1\|WP_141494018.1\|69191_70064_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP032486.1\|WP_141494035.1\|97625_98123_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032486.1\|WP_141494028.1\|85270_86182_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP032486.1\|WP_170211113.1\|92526_94869_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372590
NZ_CP032486.1\|WP_141494025.1\|80515_81223_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP032486.1\|WP_141494020.1\|71710_72868_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032486.1\|WP_141494024.1\|76406_79724_+\|CRISPR-associated-endonuclease-Cas3''	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP032486.1\|WP_170211111.1\|74790_75441_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032486.1\|WP_170211112.1\|75430_76396_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP032486.1\|WP_141494021.1\|72867_73716_+\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
NZ_CP032486.1\|WP_141494017.1\|67781_68045_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032486.1\|WP_141494029.1\|86377_86620_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225215
NZ_CP032486.1\|WP_141494030.1\|86619_86949_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP032486.1\|WP_141494027.1\|81865_85009_-\|DUF4214-domain-containing-protein	unknown	unknown	gnl\|CDD\|259837

Protein	Function_ID	Function_description	E-value
NZ_CP032486.1\|WP_141494019.1\|70060_71095_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	5.9495e-56
NZ_CP032486.1\|WP_141494026.1\|81266_81869_-\|CdiI-family-contact-dependent-growth-inhibition-immunity-protein	gnl\|CDD\|259838	cd13445, CDI_inhibitor_EC869_like, Inhibitor of the contact-dependent growth inhibition (CDI) system of Escherichia coli EC869, and related proteins. CDI toxins are expressed by gram-negative bacteria as part of a mechanism to inhibit the growth of neighboring bacteria. This model represents the inhibitor of the CdiA effector protein from Escherichia coli EC869 (which is a DNAse). CdiA secretion is dependent on the outer membrane protein CdiB. Upon binding to a receptor on the surface of target bacteria, the CDI toxin is delivered. The inhibitors are intracellular proteins that inactivate the toxin/effector protein. This domain is also known as DUF1436.	2.60172e-23
NZ_CP032486.1\|WP_141494022.1\|73708_74791_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|187868	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog.	3.77527e-82
NZ_CP032486.1\|WP_141494032.1\|87778_88492_-\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.05404e-59
NZ_CP032486.1\|WP_141494034.1\|96943_97141_+\|HVA1-family-protein	gnl\|CDD\|378576	pfam11160, DUF2945, Protein of unknown function (DUF2945). This family of proteins has no known function.	2.52588e-10
NZ_CP032486.1\|WP_141494018.1\|69191_70064_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.68669e-41
NZ_CP032486.1\|WP_141494028.1\|85270_86182_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	5.85749e-48
NZ_CP032486.1\|WP_170211113.1\|92526_94869_+\|hypothetical-protein	gnl\|CDD\|372590	pfam13403, Hint_2, Hint domain. This domain is found in inteins.	1.88262e-47
NZ_CP032486.1\|WP_141494025.1\|80515_81223_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.57813e-64
NZ_CP032486.1\|WP_141494027.1\|81865_85009_-\|DUF4214-domain-containing-protein	gnl\|CDD\|259837	cd13444, CDI_toxin_EC869_like, Zn-dependent DNAse of the contact-dependent growth inhibition (CDI) system of Escherichia coli EC869, and related proteins. CDI toxins are expressed by gram-negative bacteria as part of a mechanism to inhibit the growth of neighboring bacteria. This model represents the C-terminal toxin domain of CdiA effector proteins. CdiA secretion is dependent on the outer membrane protein CdiB. Upon binding to a receptor on the surface of target bacteria, the CDI toxin is delivered. A wide variety of C-terminal toxin domains appear to exist; this particular example from Escherichia coli EC869 and other bacteria appears to function as a Zn2+-dependent DNAse degrading the genome of target cells.	5.18396e-20
NZ_CP032486.1\|WP_141494024.1\|76406_79724_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	6.29277e-102
NZ_CP032486.1\|WP_170211112.1\|75430_76396_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.74513e-67
NZ_CP032486.1\|WP_141494021.1\|72867_73716_+\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	4.85346e-17
NZ_CP032486.1\|WP_141494029.1\|86377_86620_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.19435e-17
NZ_CP032486.1\|WP_141494030.1\|86619_86949_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.12266e-63

>NZ_CP032486.1|WP_141494024.1|76406_79724_+|CRISPR-associated-endonuclease-Cas3''
MREIIAVCRSEKKSRERVARILDRYFWRIGDRTWRGKATNACLNRVSRELRKTATRNTAVVIHEIRSAASSRKPLIRIGAQHAFSEEGAVPVATHPAAFSNRKSSLASRETAEAILRIAALFHDLGKATALFQKKLDRAIKKGPPESDAVRHELFSAAVWDDLFGTVTDEKLPHRIKNLTPGEIDASCLRVQDLLGKLHRAPDRNLGLAFTQKADHLTYHIGMLVLTHHRLPTANRDCKTLLAEQHVNQNGALTPHVDLAIAPGTPFWHENWWLTALNREADRLRLGPPIASADMAIRASLMLADHLGSAMKTSREISDGHLANTIRAEAENLILRADSLSRHTKRVYRYARFSFDATHHQRDRYPALSEDAMPPEVAFPQLSCDTRFAWQSTAAQAAKKICSENEGGFFAAIIAGTGTGKTRGAPTILAAASLGDHVPERRYFRMSLGLGLRVLATQSAKEYVKDLNFGQKDVSVSVGAPPLEFGEDLPDSTDESGSESLVNLPEWLRIQQADGPVPEEGAEQEEDWLRGLSLDTGRSLPAFVDIFLDLAGDRNGNGRRFLNAPVLVSTIDYLMPVATPTSARFLLPALRVLSSDLILDEIDQYDGEDLAAIGRLVFQSGAAGRRVIIMSATLTKEIVETLHSSYHAGWKEYARSLGLSERCNLLICGDNPVSLSVNADDEPCDVVFERCCDAILRGFRTAPALRRGKVLPPVPTWEGLITTVDEACSAAHNENAIDIDGVRVSVGLVRMTRISHTADLARRLNAGDIGGRLRVLLCLHSQMTRLVRGWIESRLKQALTRKGDFPEAGVKALCDEVRLFERARKICAKDIEIVVITSPVIETGNDLDFDYAIIDPISTRAIIQTAGRVRRHRPPLGSTPNVWILGQSPIALDTGKLKMPGVETELSGDTQVPRSSLLDGYKGRLFSEIVGNNVFERIDAVAILDDTVSFPLKQAEAELCRKMLSISSDAPLGRYISSSTARWNTKVSQMRKFRRTNQREIRFVLKGETLSDAVWYVDMAPGTRHSVLREAGDKMRSTSLRSPEAVLLADTIERAWRAYAQNSREISSLELASLMSVGLPVWDNKTCVDVTMDDLSGLTRGSFED
>NZ_CP032486.1|WP_170211112.1|75430_76396_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MQIKGGPRLLMTDRESAVYLEHARIHVEGERVVYHIDDDENRREFNIPHVNLAVLFIGQGTSITQGAMRLLGEEGVHLAVTGSGGTPLHMGSLTSYTATRHFRELLPIYLSEEKSLKAAISVMQDRTLRMRKLGGKGATKVLRARETMGLSKKCASFEENLKTCASIQQLLGFEGQFTKACYAEFSSIAALPKDSPFRRDAGAGEATKGPTDRVKLINRLIDHGNYLCYGMAGAALWALGIPPHMSIFHGKTRAGGLVFDIADSFKDALVLPLAFAPYKEKSVSEAEKTFRARLIEAFNDHAILKEAIATIDKLILAANLT
>NZ_CP032486.1|WP_170211111.1|74790_75441_+|hypothetical-protein
MDTLNEGKGRCLATSRLLIRPVRAVIELGAAGDVLSGAIRAVHHANRHGSVEDFIAIAFPTMRMGRETMLSGDDIELIGSDASLGRFLELEGIITLKRRGMLEDTSLDQVYADEGMIGAAYVRDRAVEKHTPGWIRRTEARAARRGKPLGKAVKQRENDLKSLVLTHGTTVLHIREVVGPFTDRPLHVSTYGFSGSGDPAILPVFPESARTVDNAD
>NZ_CP032486.1|WP_141494022.1|73708_74791_+|type-I-F-CRISPR-associated-protein-Csy3
MAKTSAPLSLETGMLAFARSLQITEGLFYATRKADSAIAAPIEILEKGVRGQSSEDKAKNPGLSNPQSVEYAIVPQGHDGVRLTFSIRFMPFSRAPHACNNTDVGSAYERLATAYRAADGYKVLAGLYLWNIANARFAWRNRFQSDAMSVSITTSGGTRLKFDPFKLSLTEPASAVELSAALIGGNTADIEKVIDGIAFGLANEDHEAYTVNVSWDAEMEAGQEVFPSQEYVREEKAIANLSRVFAKLPTKWGGRSLMQASMHSQKIGAALRCIDIWHGDEDETKPIPVNPYGGVQETGAVLRNSKTKRSFYDLRKNGETLIDGIESATTVSEISGDAHFVMANLIRGGVFGSSSKKAEG
>NZ_CP032486.1|WP_141494021.1|72867_73716_+|hypothetical-protein
MPELRNLFVLRDIQASRVNLIMNDYAAGLPSPLSFLGLGDFLARRLKLKPWSASVLPILHAVRVSEGRTKPEMENKSSVFAPIETMEDLVGSVTVSLLINLPGCESENALARALTGCRIAGGIIQNNDVKVQALTPDGSAFRSLRRGYAMLAPEQNERRVISKGDNDSLTEIATLLFPVERPAGFGWIVPAAVGYHLLEDPEHAPKRTRTRSKDIPHVFAEPVLGIAELVSVRNRRLTELSPEAFASAFWHWDAREDMLLGHSAYFSNNKLNDVTKEVLNHG
>NZ_CP032486.1|WP_141494020.1|71710_72868_+|hypothetical-protein
MTDGAEEETEKSTQAVKTEQLLSFKTSGRNIAPNALSAEFSLMKGCLKSPLTPKVALRLADKSGNYLLKLVSPRTDGDNAILRIEVPRGNKLGDILPSTNAPDIPFCKVIFRPLEIDGYPPRSVVDLIRNPEDHTTIVLDAFAEVFGTDVLETLKTSLLTVLPAPTQLGIGEFPIIFVPRPDGQDLQITPVSPAAAFMGMKRVRKHYFQKTQPDRPMPRSKWTEQAVSAKPQNISGAIGGPRVRFRADMPTQLSHEEADLFRFAQGGSFPLWRDSAVAARILRYGDRLTSDNEFNNKNTRAALNQVADDLISDAVEFIQDTLRDTVDYAKRQGIAEKHSALPSLPQLLLKRRWKNTDEEDKARKALTSPHFELRLAKSRMAAKGL
>NZ_CP032486.1|WP_141494019.1|70060_71095_-|AAA-family-ATPase
MSFLKEVREKLGLSQSQLKDVLNLRLNRSYDRHTISRWENSRQPLPAEVSSELEALLHGEKRQTTIITFANQKGGVGKTTSALNVSVALSKMGYRVLLIDVDPQASATAALLGMQIVPLYRQGKTLAHALLKDASMSNCIVKKGPIEGVEVEIPVDFCPSHIDLAEVDIRREPGTEGLLKEAISQVQDNYEFIILDSPPHLGFLTWMALASSNTVFVPVRTEPYDVMGVNLILDTITKVNRRSNPRLRLGGVIPTQFVQNQYVDVGIIEHLIRVMDNRAPVLEPVPSSTSFSNAAWASKIPVDVAPRSPSVRVYVRLAEAIAGRRNFINASSVLSLDTDKRENS
>NZ_CP032486.1|WP_141494018.1|69191_70064_-|ParB/RepB/Spo0J-family-partition-protein
MKRTFKQRPASAFAQTHSQVMEQVDVPFLGDGKFRHTFEASIDQIIPDPNQPRRNFEQASLEELAESLKQQGQLQPILVRQSSENSEKWIIVAGERRFRAAKLADWTSILAIPHDGNSTSAALIENLMRVDLNPVEEAKGIKNLLDYNQWSQRKAAAELGMDQARISRAIKLLSLPESFLEKAGAASVPMNVLVGIARIDDPARRDKLMEKALSGEVTVASLNERNFSIEPDRKDGQSNPDRQLKAINIEKMAPKIIQVIRDFEVKNVKFSDKDMSALRLLHAELTKLVG
>NZ_CP032486.1|WP_068173535.1|68539_68914_-|hypothetical-protein
MRRYAFPYIPNRPVRVPQRWTDTFAPLSCRRCSAVWEEGDPALRVPCRGCGAGPSEPCRRSKGGNERVCACRDEDAVRLGMLEPCEGLTWDGRHEKPLRLRAEPVPSALMCRAVRTGAPISRWG
>NZ_CP032486.1|WP_141494017.1|67781_68045_-|hypothetical-protein
MTRQSQPIPAGFSLIQAHREGWTLHTLPHPQNGPEGETQLRGLDCGDQQAWWRVASKARLGSRYHLSALALISAAEREQIALRFGPF
>NZ_CP032486.1|WP_141494025.1|80515_81223_+|IS6-family-transposase
MGDFKGRHFRGEVILWAVRWYCHYGISYRDLETMLAERGVSVDHSTIYRWVQRYAPEMEKRLRWYWKRPGFSSSWRVDETYIKVKGKWTYLYRAVGKGGDRIDFFLSPTRSAKAAKRFLSKALNGLRRWEKPETINTDKAPTYGRAINEFTKNGKLPDTVKHRQVKYLNSVIEADHGKLKQLIKPVRGFKSLKTAYATIKGFEVMRALKKGQAELFQFQKGIMGEVRLIERQFSF
>NZ_CP032486.1|WP_141494026.1|81266_81869_-|CdiI-family-contact-dependent-growth-inhibition-immunity-protein
MNELIYTPERIRGLHRKSVLIALSPKYISLESQEIWKGVYFSRTGWCVHASKDATAQWIGENFRKALLSSEYFNTPGRPLDKEDRIKMEEVSDKRRLDFCDEIMRTYGYKKREKIGDRCDVVYASWHDLVDDFVTLSASKRQPGGHSAWGPMDKKKYASTRVTVPLSASDEELGLAIRDALSRCEAPGRQKINSPALLQS
>NZ_CP032486.1|WP_141494027.1|81865_85009_-|DUF4214-domain-containing-protein
MSDQNVLVINQNQNLLFNDNHGAVSIEASASFFLKEKEFIDAQQAGNKEDIYQYISKGNVDYWNVIGNNKQNTFDFKNYSLSTLSESKSTAFSYDQYGNVYAAPDQGGIYGPSSQMGLYNFGPAPSSWISTHDRHMLTRSYADYYRDNVADKIGSEILNRPLTSAEKQDDWNSIYDTVNSRLAANRVLTPYQAAQDQYIATIKNIRNKYIENSPYVNQSAHKMYDNFYGNLSDGDSRWFKDQLKSGKTFEKIWQEEAHSGRMRAQVLDMINGVQDRNDAKEEWDAPYVDAVTNSLANHSQTFKDIRNNLIDGTSQVAAHKMYDNFYGYTSDTDIAWFKDQLHSGKTTQQVWQEEAHSGRMRAHVMDMINGVQDRNDAKEEWDGNYINGFTDRLANRSASFNDMRNELIDGTSRGSAEKMFNSFYGHIEESNWNWYKEQLHSGKTTQQIRAEQAYSEEVQNNINKLYQDELGRSADPSGLATYQKSLADGGSLQAIRSTIAYSQEAQNNLNKLYQDELGRSADPSGLATYQKSLADGGSLQSIRSAIAYSQEAQNNINKLYQDELGRSADPSGLATYQKSLADGGSLQAIQSTIAYSQESHDTIMAQYRTEVGLYNPNDGQIAFYQKILANSGNFSNVKTALAYSSETVQSLQSSLEFMYGRPFTETDIQWRKNVQDDLASGASSHLYVIKELTESSEFHDGANQLFAHWGLPPINDFQLQTLRTGMTNLYQAKAIVNGQTQEQLEAEAAAYKAPAANATFDDYIASPAASVEQATDLMASMLVEPMMDPAETWQDVDGILLQGVTSTMNAAVSQSITKTVIQQDKDNPQTPCDDVQMFRRLHTTDVTNIGQITSANAKWQTVNQRDWPSSYATDGIVWATGAGKGPTAQGLPYEAYVQQKLNGGNTTGNYVWLQDHKSNWMTFDHWNKDTGDAVSDKVLNTGRKSFQEIDKDKKYSPANIKYQIWKDLKEMSIKYVRGNSRQGSPVTIQFTQSEIESYRFELAVRVDGTTDAQWKQICEAYHGAAAKMASYETNGYKPLTFEIDAIV
>NZ_CP032486.1|WP_141494028.1|85270_86182_+|recombinase-family-protein
MKGQRVGYVRVSTFDQNVDRQLDGEILDRVFTDKASGKDVQRAQLDELLAFVREGDIVVVHSMDRLARNLDDLRNLVHTLTRKGVCVEFIKERLIFSDKDESLPKLMLSVMGAFAEFERSLIRERQREGIALAKKRGAYRGRKRVLSHEQVADILQRISDGETKAAIARERGISRETLYQYLRAYPNGGVRMRPVKEVVHDAPMGAKPFIATLILNIQSQSASGPSLSSVRAEIEDMLAEDYDVQKNEKGEYRLAIPAEYTRTEHDLTAEIADLFDEIDAIAEEYVCTAVGTLREMGGQERVW
>NZ_CP032486.1|WP_141494029.1|86377_86620_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MHGTVRKWGNSAAIRLPTSILEAVQLQIDQPVDVHEEDGRIIIQPIRHKNLSLESLTAAITDENRHGEVDFGVAIGGEAW
>NZ_CP032486.1|WP_141494030.1|86619_86949_+|endoribonuclease-MazF
MPEWVPDCGEIVWLEFDPQAGREQAGHRPAVVLSPASYNAKSGMIVCCPTTTRIKGYPFEVSLQGQPASVVLSDQVRSLDWRARRAKMKGKVTEDELESVREKVRLLVG
>NZ_CP032486.1|WP_141494032.1|87778_88492_-|IS6-family-transposase
MTPMSKIPLSYKRHRFPRELIAHAVWLYFRFPLSFRLVEEMLLERGIVVSYETICRWNLKFGAEYVRSLRRKRAKRGDLWHLDEVRVVIGGHIHWLWRAVDQDGYILDEILQKQRNTKAAKRLLTRLLRQQGVRPRRMITDKLKSYEAAKRKLGLSVRHLSHKGLNNRAENSHLPLRKRERTMQRFRSPGGCQRFLTVFSAVRNLFVPPVANANALARHMHRLQAFAQWKTVTILTA
>NZ_CP032486.1|WP_170211113.1|92526_94869_+|hypothetical-protein
MADTVVSGNQVTRNKTFNNGDRLYVGPNGSADYATLNSGSLATITNSPYGIHDSTVNNGASLVLSSGGFGTTTKVNGGNVTVSSGGTYNYNWTNAGGTVTVLNGGTAWTNFVSGQNAAVIISSGGFGSDARVGSDGRYSVGSGGRLSGANVGSGGTLYAIGGSIATATISAGGTAFIQNGGTLTSATVDGGTLFLNGTDPTNNTIFTSNGGTVYLNNNYRNTTSWGNISSNTTFAVNSGGQLFGGTVLQGGVIRVNEGGKLTSATLNGGTLNLNGANATSNTTFGTSGGTVNLFSGYSNTVAWQNITSNTRFNVLSGAIFSGTNVLSGATVNVASGGSLTGTLSVNPGGTVVLNGTAGSGTVNLSGDGSQLTISGTQMPTNVISGWSPTDKIDLASIPYGSITSVTTTESGVTFHTANGSYSLNIPGANKYGYALNKDSDGSTIYTTCFAEGTHITTEEGDIAVENLKIGTQIHTPNGLMPLKWLGHRSITVAKQKHPEDNWLVRIRRGAFAEGTPARDLLVTQEHCMVFDGRLVPARMLVNNRSVIVDRSINSYTYYHVELESHAAIWAEKTLTESYLDTGNRDQFENNTVVSLSPRRRTGGSVTLPLDTSRDFVEPIFRSIAERAGVAGATSQHGMTCDPDLHLLTETGEVIRPRRISGEQHVFFLPDTIEHVKIMSRSSRPSDVVGPYVDDRRDLGVLIGQMKLFGANKTTSIEVPSSPVELSGWYDCSAETGRWTNGAATLFVGPARNNEPRILTLQILSQGHYRIESEQGTAATA
>NZ_CP032486.1|WP_141494034.1|96943_97141_+|HVA1-family-protein
MKKNEHVAWNTTRGETTGHVKKQVTHDIKIKGNTVKASGDHPKIVVKSDKTGAEAAHKPESLKKR
>NZ_CP032486.1|WP_141494035.1|97625_98123_-|hypothetical-protein
MVIRIHDGEEASATRTPLEGGILGWAAVAMLGVCLVVIRVVPSNRASQVRRFAQIWAGGLFCFFAGVHRGASFYDAKGPQLSDPFIFLATHALGLGAILSSSNISWRALQVGALLNMAGDVRLARQGRLPRFLVRLRPAQLSTAFVLLILLEHSTPNHVLSSKSD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP032486_1	1.1\|79877\|32\|NZ_CP032486\|CRISPRCasFinder,CRT	79877-79908	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	79877-79908	0	1.0
NZ_CP032486_1	1.2\|79937\|32\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	79937-79968	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	79937-79968	0	1.0
NZ_CP032486_1	1.3\|79997\|32\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	79997-80028	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	79997-80028	0	1.0
NZ_CP032486_1	1.4\|80057\|32\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80057-80088	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	80057-80088	0	1.0
NZ_CP032486_1	1.5\|80117\|32\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80117-80148	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	80117-80148	0	1.0
NZ_CP032486_1	1.6\|80177\|32\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80177-80208	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	80177-80208	0	1.0
NZ_CP032486_1	1.7\|80237\|32\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80237-80268	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	80237-80268	0	1.0
NZ_CP032486_1	1.8\|80297\|29\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80297-80325	29	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	80297-80325	0	1.0
NZ_CP032486_1	1.9\|80354\|32\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80354-80385	32	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	80354-80385	0	1.0
NZ_CP032486_1	1.8\|80297\|29\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80297-80325	29	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	244118-244146	5	0.828
NZ_CP032486_1	1.8\|80297\|29\|NZ_CP032486\|CRISPRCasFinder,CRT,PILER-CR	80297-80325	29	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	623349-623377	7	0.759
NZ_CP032486_1	1.1\|79877\|32\|NZ_CP032486\|CRISPRCasFinder,CRT	79877-79908	32	MH316562	Mycobacterium phage Erk16, complete genome	3745-3776	8	0.75
NZ_CP032486_1	1.1\|79877\|32\|NZ_CP032486\|CRISPRCasFinder,CRT	79877-79908	32	DQ398051	Mycobacterium phage PLot, complete genome	3745-3776	8	0.75
NZ_CP032486_1	1.1\|79877\|32\|NZ_CP032486\|CRISPRCasFinder,CRT	79877-79908	32	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	98189-98220	10	0.688

1. spacer 1.1|79877|32|NZ_CP032486|CRISPRCasFinder,CRT matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcaagatcgccggaattgggacgagcagcac	CRISPR spacer
ttcaagatcgccggaattgggacgagcagcac	Protospacer
********************************

2. spacer 1.2|79937|32|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcggatacgccgctaaaagttttaaagctata	CRISPR spacer
tcggatacgccgctaaaagttttaaagctata	Protospacer
********************************

3. spacer 1.3|79997|32|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gattgaagatcagggcgttttacagtctggca	CRISPR spacer
gattgaagatcagggcgttttacagtctggca	Protospacer
********************************

4. spacer 1.4|80057|32|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttaagtctggagcggtgctgtccttacacatt	CRISPR spacer
ttaagtctggagcggtgctgtccttacacatt	Protospacer
********************************

5. spacer 1.5|80117|32|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aaacagagacatcagacggcaaaggttcaatc	CRISPR spacer
aaacagagacatcagacggcaaaggttcaatc	Protospacer
********************************

6. spacer 1.6|80177|32|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaattcaggaaataaacaatgacagccccta	CRISPR spacer
aaaattcaggaaataaacaatgacagccccta	Protospacer
********************************

7. spacer 1.7|80237|32|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aataataatagctcttttacgccagttctgta	CRISPR spacer
aataataatagctcttttacgccagttctgta	Protospacer
********************************

8. spacer 1.8|80297|29|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcaacagacggggcaggaggcgggccaac	CRISPR spacer
tcaacagacggggcaggaggcgggccaac	Protospacer
*****************************

9. spacer 1.9|80354|32|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgaacatcagcggacaattcgttggcgaactg	CRISPR spacer
tgaacatcagcggacaattcgttggcgaactg	Protospacer
********************************

10. spacer 1.8|80297|29|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 5, identity: 0.828

tcaacagacggggcaggaggcgggccaac	CRISPR spacer
acaacacaccgggcaggaggcgggccttc	Protospacer
 ***** ** ****************  *

11. spacer 1.8|80297|29|NZ_CP032486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.759

tcaacagacggggcaggaggcgggccaac	CRISPR spacer
cgaacagacgggccagcaggcgggcggtc	Protospacer
. ********** *** ******** . *

12. spacer 1.1|79877|32|NZ_CP032486|CRISPRCasFinder,CRT matches to MH316562 (Mycobacterium phage Erk16, complete genome) position: , mismatch: 8, identity: 0.75

ttcaagatcg----ccggaattgggacgagcagcac	CRISPR spacer
----aggccgatgcccggaattgggacgagcagcgg	Protospacer
    **..**    ********************.

13. spacer 1.1|79877|32|NZ_CP032486|CRISPRCasFinder,CRT matches to DQ398051 (Mycobacterium phage PLot, complete genome) position: , mismatch: 8, identity: 0.75

ttcaagatcg----ccggaattgggacgagcagcac	CRISPR spacer
----aggccgatgcccggaattgggacgagcagcgg	Protospacer
    **..**    ********************.

14. spacer 1.1|79877|32|NZ_CP032486|CRISPRCasFinder,CRT matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 10, identity: 0.688

ttcaagatcgccggaattgggacgagcagcac	CRISPR spacer
gtcaagatcgccggctttgggacgttcctgct	Protospacer
 *************  ********  *    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3636

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493968.1\|1672_2035_-	hypothetical protein	NA	NA	NA	NA
WP_141493969.1\|2757_3636_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.4e-56	42.3

DBSCAN-SWA_2

13924 : 14581

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493976.1\|13924_14581_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.2e-82	64.8

DBSCAN-SWA_3

22444 : 24553

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493983.1\|22444_24553_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	3.1e-33	29.6

DBSCAN-SWA_4

27870 : 28554

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493986.1\|27870_28554_+	response regulator	W8CYM9	Bacillus_phage	3.5e-23	31.1

DBSCAN-SWA_5

31714 : 35448

Leptospira_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493989.1\|31714_34780_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	3.0e-45	22.5
WP_141493990.1\|34776_35448_+	response regulator	W8CYM9	Bacillus_phage	1.4e-16	26.9

DBSCAN-SWA_6

40123 : 40840

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141493993.1\|40123_40840_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.0e-85	63.2

DBSCAN-SWA_7

60349 : 60631

Pelagibaca_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141494010.1\|60349_60631_+	HU family DNA-binding protein	A0A1B0T6M4	Pelagibaca_phage	5.0e-08	42.1

DBSCAN-SWA_8

64987 : 81223

Vibrio_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141494016.1\|64987_67669_-	Eco57I restriction-modification methylase domain-containing protein	I6NW45	Burkholderia_virus	1.0e-142	37.2
WP_141494017.1\|67781_68045_-	hypothetical protein	NA	NA	NA	NA
WP_068173535.1\|68539_68914_-	hypothetical protein	NA	NA	NA	NA
WP_141494018.1\|69191_70064_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.2e-10	30.7
WP_141494019.1\|70060_71095_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	2.1e-11	25.9
WP_141494020.1\|71710_72868_+	hypothetical protein	NA	NA	NA	NA
WP_141494021.1\|72867_73716_+	hypothetical protein	NA	NA	NA	NA
WP_141494022.1\|73708_74791_+	type I-F CRISPR-associated protein Csy3	A0A2D0YYX4	Vibrio_phage	3.9e-24	30.3
WP_170211111.1\|74790_75441_+	hypothetical protein	NA	NA	NA	NA
WP_170211112.1\|75430_76396_+	type I-F CRISPR-associated endonuclease Cas1	A0A2I7RCU9	Vibrio_phage	2.1e-29	31.4
WP_141494024.1\|76406_79724_+	CRISPR-associated endonuclease Cas3''	A0A2I7RCU8	Vibrio_phage	8.8e-51	26.0
WP_141494025.1\|80515_81223_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	5.2e-86	63.5

DBSCAN-SWA_9

85270 : 86182

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141494028.1\|85270_86182_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	3.6e-39	71.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP032485

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP032486

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection