Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041222 Porphyrobacter sp. YT40 chromosome, complete genome 2 crisprs DEDDh,csa3,WYL,cas3,DinG 0 3 2 0
NZ_CP041223 Porphyrobacter sp. YT40 plasmid pYT40, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP041222
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041222_1 217566-217683 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041222_2 912048-912217 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041222_1 1.1|217592|25|NZ_CP041222|PILER-CR 217592-217616 25 NZ_CP013855 Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence 308492-308516 4 0.84
NZ_CP041222_1 1.1|217592|25|NZ_CP041222|PILER-CR 217592-217616 25 NC_014818 Asticcacaulis excentricus CB 48 plasmid pASTEX01, complete sequence 25916-25940 4 0.84
NZ_CP041222_1 1.1|217592|25|NZ_CP041222|PILER-CR 217592-217616 25 NZ_CP018080 Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence 143998-144022 5 0.8
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 MH576962 Streptomyces phage Satis, complete genome 69237-69264 5 0.821
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 MK620894 Streptomyces phage Kradal, complete genome 69241-69268 5 0.821
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 210645-210672 5 0.821
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 NZ_CP016082 Streptomyces sp. SAT1 plasmid unnamed2, complete sequence 59113-59140 6 0.786
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 NZ_AP022333 Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence 72757-72784 6 0.786
NZ_CP041222_2 2.2|912170|28|NZ_CP041222|PILER-CR 912170-912197 28 NZ_CP045339 Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence 453498-453525 6 0.786
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 953459-953486 7 0.75
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 CP003957 Rhodococcus opacus PD630 plasmid 8, complete sequence 130947-130974 7 0.75
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 NZ_LT900339 Gluconobacter oxydans 621H isolate WT-DSMZ plasmid 2 141928-141955 7 0.75
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 NC_006672 Gluconobacter oxydans 621H plasmid pGOX1, complete sequence 141926-141953 7 0.75
NZ_CP041222_1 1.2|217643|28|NZ_CP041222|PILER-CR 217643-217670 28 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 1178919-1178946 7 0.75

1. spacer 1.1|217592|25|NZ_CP041222|PILER-CR matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 4, identity: 0.84

agcgcgacccctgcgccgggggcag	CRISPR spacer
agcgcgaccccggcgccggcggcga	Protospacer
*********** ******* ***..

2. spacer 1.1|217592|25|NZ_CP041222|PILER-CR matches to NC_014818 (Asticcacaulis excentricus CB 48 plasmid pASTEX01, complete sequence) position: , mismatch: 4, identity: 0.84

agcgcgacccctgcgccgggggcag	CRISPR spacer
agcgcgccccctgcgccggggcctc	Protospacer
****** ************** *  

3. spacer 1.1|217592|25|NZ_CP041222|PILER-CR matches to NZ_CP018080 (Sulfitobacter sp. AM1-D1 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.8

agcgcgacccctgcgccgggggcag	CRISPR spacer
tccttgacccctgcgccgggggcat	Protospacer
  * .******************* 

4. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 5, identity: 0.821

ggcgggagcggcggggcgaccgagagcc---	CRISPR spacer
ggcgggcgcggcggggcgaccg---gctcgg	Protospacer
****** ***************   **.   

5. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 5, identity: 0.821

ggcgggagcggcggggcgaccgagagcc---	CRISPR spacer
ggcgggcgcggcggggcgaccg---gctcgg	Protospacer
****** ***************   **.   

6. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.821

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
cgggcgagctgccgggcgaccgagagcc	Protospacer
 * * **** ** ***************

7. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
tggaggagcggcggggcgaccgggacac	Protospacer
 * .******************.**  *

8. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to NZ_AP022333 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence) position: , mismatch: 6, identity: 0.786

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
acctcgagcggctgggcgaccgcgagcc	Protospacer
. *  ******* ********* *****

9. spacer 2.2|912170|28|NZ_CP041222|PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 6, identity: 0.786

aaaggcgctcttgttttcctgcaccaga	CRISPR spacer
agatgcgctcttgtttttctgcaccttt	Protospacer
*.* *************.*******   

10. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.75

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
gtcgggggcggcggggcgaccgaacaga	Protospacer
* ****.****************. .  

11. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.75

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
cccgggagaggcggggcgaccgatgctc	Protospacer
  ****** ************** . .*

12. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to NZ_LT900339 (Gluconobacter oxydans 621H isolate WT-DSMZ plasmid 2) position: , mismatch: 7, identity: 0.75

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
cgcgggagcggcgaggcggccgagcagg	Protospacer
 ************.****.***** .  

13. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to NC_006672 (Gluconobacter oxydans 621H plasmid pGOX1, complete sequence) position: , mismatch: 7, identity: 0.75

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
cgcgggagcggcgaggcggccgagcagg	Protospacer
 ************.****.***** .  

14. spacer 1.2|217643|28|NZ_CP041222|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.75

ggcgggagcggcggggcgaccgagagcc	CRISPR spacer
gtcgggggcggcggggcgaccgaacaga	Protospacer
* ****.****************. .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1335887 : 1374622 53 Burkholderia_phage(21.88%) capsid,portal,head,terminase,tail,integrase,plate attL 1334866:1334883|attR 1384591:1384608
DBSCAN-SWA_2 3584371 : 3620378 48 Pseudomonas_phage(14.29%) plate,transposase,tail,integrase attL 3578538:3578554|attR 3613461:3613477
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP041223
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 23738 : 134361 95 Escherichia_phage(23.81%) integrase,transposase attL 28498:28557|attR 138826:138842
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage