CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041236	Pseudomonas azotoformans strain P45A chromosome, complete genome	5 crisprs	DEDDh,DinG,csa3,cas3,WYL,RT	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041236_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041236_1

120703-120813

Orphan

Consensus_repeat	Method
TGTAGCTTAGTTGGTTAGAGCGCACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041236_1

>merge|NZ_CP041236|1|120703-120813|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCCATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCC

>NZ_CP041236|1|1|120703-120813|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCC	ATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTC
TGTAGCTCAGTTGGTTAGAGCGCACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041236.1\|WP_065940988.1\|126893_127358_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NZ_CP041236.1\|WP_092488073.1\|109970_111464_-\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|274588
NZ_CP041236.1\|WP_065940996.1\|136556_137405_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP041236.1\|WP_141605209.1\|118652_119024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_092490001.1\|124974_126855_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP041236.1\|WP_141605212.1\|131686_132445_-\|DUF3050-domain-containing-protein	unknown	unknown	gnl\|CDD\|378614
NZ_CP041236.1\|WP_092490007.1\|134665_135691_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP041236.1\|WP_027608003.1\|111643_113080_-\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl\|CDD\|224201
NZ_CP041236.1\|WP_141605213.1\|133757_134651_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|225086
NZ_CP041236.1\|WP_141605208.1\|113415_114537_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
NZ_CP041236.1\|WP_092490008.1\|135692_136544_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NZ_CP041236.1\|WP_141605211.1\|130751_131690_-\|diiron-oxygenase	unknown	unknown	gnl\|CDD\|378680
NZ_CP041236.1\|WP_141605210.1\|127377_130755_-\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|341253
NZ_CP041236.1\|WP_092490005.1\|132783_133491_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP041236.1\|WP_141605207.1\|108992_109178_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP041236.1\|WP_092488064.1\|117241_118462_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
NZ_CP041236.1\|WP_003187413.1\|109436_109652_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP041236.1\|WP_092488067.1\|114989_115919_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176170
NZ_CP041236.1\|WP_065937843.1\|116047_117229_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP041236.1\|WP_003187417.1\|113079_113400_-\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|378941

Protein	Function_ID	Function_description	E-value
NZ_CP041236.1\|WP_092488067.1\|114989_115919_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176170	cd08481, PBP2_GcdR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators GcdR-like, contains the type 2 periplasmic binding fold. GcdR is involved in the glutaconate/glutarate-specific activation of the Pg promoter driving expression of a glutaryl-CoA dehydrogenase-encoding gene (gcdH). The GcdH protein is essential for the anaerobic catabolism of many aromatic compounds and some alicyclic and dicarboxylic acids. The structural topology of this substrate-binding domain is most similar to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.7041e-101
NZ_CP041236.1\|WP_092488073.1\|109970_111464_-\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|274588	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase. This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species, where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins represented by this model, possibly erroneously.	0
NZ_CP041236.1\|WP_065940996.1\|136556_137405_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	6.04002e-56
NZ_CP041236.1\|WP_092490001.1\|124974_126855_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	7.92114e-79
NZ_CP041236.1\|WP_141605212.1\|131686_132445_-\|DUF3050-domain-containing-protein	gnl\|CDD\|378614	pfam11251, DUF3050, Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.	1.37717e-111
NZ_CP041236.1\|WP_092490007.1\|134665_135691_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	8.20997e-37
NZ_CP041236.1\|WP_027608003.1\|111643_113080_-\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl\|CDD\|224201	COG1282, PntB, NAD/NADP transhydrogenase beta subunit [Energy production and conversion].	0
NZ_CP041236.1\|WP_141605213.1\|133757_134651_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|225086	COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	2.37334e-97
NZ_CP041236.1\|WP_141605208.1\|113415_114537_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
NZ_CP041236.1\|WP_092490008.1\|135692_136544_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.75269e-106
NZ_CP041236.1\|WP_141605211.1\|130751_131690_-\|diiron-oxygenase	gnl\|CDD\|378680	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. This family is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalyzing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.	2.19002e-06
NZ_CP041236.1\|WP_141605210.1\|127377_130755_-\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	1.78166e-131
NZ_CP041236.1\|WP_092490005.1\|132783_133491_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.68544e-41
NZ_CP041236.1\|WP_141605207.1\|108992_109178_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	3.28021e-07
NZ_CP041236.1\|WP_092488064.1\|117241_118462_+\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	2.31227e-173
NZ_CP041236.1\|WP_003187413.1\|109436_109652_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.54005e-08
NZ_CP041236.1\|WP_065940988.1\|126893_127358_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	9.81924e-32
NZ_CP041236.1\|WP_065937843.1\|116047_117229_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
NZ_CP041236.1\|WP_003187417.1\|113079_113400_-\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	4.6418e-40

>NZ_CP041236.1|WP_141605209.1|118652_119024_-|hypothetical-protein
MISRGVTCDADNLVDYQSDSTSTHTNCLIQLLKSGWLRAFVSTEARILQQPHLLSSDYFQKLSKISSTTSTTCACDLSSAGGEFYSVTRCCQHLFFSAFDREDRIVNSVKQHDAINSFWASMN
>NZ_CP041236.1|WP_092488064.1|117241_118462_+|CoA-transferase
MGALSHLRVLDLSRVLAGPWSGQILADLGAEVIKVERPGSGDDTRAWGPPFLKDVDGENTSEAAYYLSANRNKESVTIDFTRPEGQQLVRDLAAKSDILIENFKVGGLAAYGLDYESLKKVNPELIYCSITGFGQTGPYAARAGYDFMIQGLGGLMSLTGRPEGEEGAGPVKVGVALTDILTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLATGAAPKRLGNAHPNIVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPRFSTNKVRVANRAELIPLIRQVTVFKTTAEWVSQLERVGVPCGPINDLAQVFADPQVKARGLAIQLPHALSGVVPLVASPIRLSKTPVEYRTAPPLLGQHTAKVLQDVLGLGLANVKALKEAGVI
>NZ_CP041236.1|WP_065937843.1|116047_117229_+|acyl-CoA-dehydrogenase
MAGKASFNWIDPLLLDQQLTEEERMVRDSAEQFAQDKLAPRVLEAFRHEKTDPAIFREMGETGLLGAMIPEQYGGSGLNYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPINEFGTEAQKQKYLPKLASGEWIGCFGLTEPDHGSDPGAMVTRARKVDGGYSLSGAKMWITNSPIADVFVVWAKDDAGDIRGFVLEKGWKGLSAPAIHGKVGLRASITGEIVMDNVFVPEENIFPDVRGLKGPFTCLNSARYGISWGALGAAEFCWHTARQYTLDRQQFGRPLAATQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKSLDIARMARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGLQAFY
>NZ_CP041236.1|WP_092488067.1|114989_115919_-|LysR-family-transcriptional-regulator
MCTFYVRTRYMRRKIPSTTALVSFEAAARHESFTKAAHELSITQGAICRQIASLEEFLSVELFRRSRRGVKLTEAGLSYSRRVATQLDAVERDTLSVMGQQGANTIELAVVPTFGTQWLIPRLKDFQREHPEVTVNLTNRTRPFLFADTEFDAAIYFGDADWSGTESHRLMGENPVPVCSPRLLGELERFTPQEIAELPLLQQTTRPYAWRQWFNAQQLNVPRDMTGPRYELFSMLSQAAMHDMGIALIPPFLIQRELDEQRLVIASPQALTSSKAYYLMIPDRKVESASLHAFRDWLIDQSQRYSPSI
>NZ_CP041236.1|WP_141605208.1|113415_114537_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha
MHIGVPLETQTGETRVAATPETIKKLIGQGHKVTVQSGAGLKASIVDSAYEAAGATIGNAGDAFGAELILKVVAPSDSELALIKSGTVLVGMLNPFSNETIAKLAEQGITAFALEAAPRTSRAQSLDVLSSQANIAGYKAVLLAAHHYPRFMPMLMTAAGTVKAARVLILGAGVAGLQAIATAKRLGAVIEASDVRPAVKEQIESLGAKFVDVPYETDEERECAVGVGGYARPMPSSWMQRQALAVHERAKQADIVITTALIPGRKAPTLLSADTVAQMKPGSVVIDLAAAQGGNCPLTVADQVVVENGVIICGPTNLAGAVAADASALYARNLLDFLKLVFNKEGQFEINLEDDIVAACLMCRDGQVIRKNA
>NZ_CP041236.1|WP_003187417.1|113079_113400_-|NAD(P)-transhydrogenase-subunit-alpha
MEELISPGIYNLIIFVLAIYVGYHVVWNVTPALHTPLMAVTNAISAIVIVGAMLAAALTVTPLGKTMGTLAVALAAVNVFGGFLVTRRMLEMFKKKAPKVKEEAPK
>NZ_CP041236.1|WP_027608003.1|111643_113080_-|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MSMNLVTTLYLIASICFIQALKGLSHPTTSRRGNLFGMLGMALAVLTTVGLIYKLGAELATAGIGYVIVGLLVGGTAGSIMAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQSLGIVKHLGDAIPAGNRLELFLGAAIGAITFSGSVIAFGKLSGKYKFRLFQGAPVQFGGQHKINLVLGLATLGLGLAFMFTGNLTAFALMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVLLGGFGNAPDAGAAAGSKEARPVKSGSADDATFLLTNADTVIIVPGYGLAVARAQHALKELTEKLTHRGVTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAKNDPNSPIAGMPILEAFKAKTIIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKAVE
>NZ_CP041236.1|WP_092488073.1|109970_111464_-|acetyl-CoA-hydrolase/transferase-family-protein
MYRDRIRLPSLLNKVMSAADAAALIEDGMTVGMSGFTRAGEAKAVPHALAERAKTSPLKITLMTGASLGNDLDKQLTEAGVLSRRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNNQLKLPDIAVIEAVAITEQGHIVPTTSVGNSASFAIFAKQVIVEINLAHNPNLEGLHDIYIPTYRPTRTPIPLVKVDDRIGSTAIPIPPEKIVAIVITNQADSASTVTPPDSDTQGIANHLINFLKQEVDAGRMTNKLGPLQAGIGNIANAVMCGLIDSPFEDLTMYSEVLQDSTFDLIDAGKLSFASGSSITLSERRNADVFGNLEHYKDKLVLRPQEISNHPEVVRRLGIIGINTALEFDIYGNVNSTHICGTRMMNGIGGSGDFARNAHLAIFVTKSIAKGGAISSVVPMVSHVDHTEHDVDILVTEVGLADLRGLAPRERARVIIDNCVHPAYRDALNTYFNSACAIGGHTPHILREALSWHINLEETGHMLKA
>NZ_CP041236.1|WP_003187413.1|109436_109652_-|DUF1127-domain-containing-protein
MERTLSSELFFEEKAVNTQASLPLRVLANLMLWQRRISSRHQLARLDSRLLADAGISEAQRYEELSKPFWR
>NZ_CP041236.1|WP_141605207.1|108992_109178_-|DUF1127-domain-containing-protein
MDTQTSLYKRLLHRTASTLAKWLRHAYERHQLAQLDLRELSDVGISPGDRMAELSKPFWRD
>NZ_CP041236.1|WP_092490001.1|124974_126855_+|methyl-accepting-chemotaxis-protein
MNLKFSHKILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWLSGRILVLESLTQNVAHQGSAADLPGLVDQPAFTSNFQFTYVGQTNGVFTQRPDAKMPDGYDPRQRPWYKQAVVADKPMLTPPYMAAVGGQIVTIAMPVKKNGELLGVVGGDLSLQTLVKIINSVDFGGIGHAFLVSGDGQVIVSPDEDQVMKNLKDIYPGTNVRIEKVNQDVVLKGQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAMLIAVVAIAVLLSLLIQVLLRPLTTMGIAMQDIAQGEGDLTRRLTVTSKDEFGEVGSAFNRFVERIHASISEVSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNASQTSSEESVQVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQQGVTNLNETLKDCDALSQQANRLKQLVDSFKI
>NZ_CP041236.1|WP_065940988.1|126893_127358_-|SRPBCC-family-protein
MKPLQPDTLIHNPNGQPIVSSVVIDCHANRLWNMVGQFAGFDAFIPSLTHIEMIGTGVGALRTKFFRDGNRVVEQLNSRDEQAMHMTWTTIYNTLGVARLWAAIKVEALGAHCSKVTWTIIADPLETAQEGFEQFVQGFADSALDNVRRLLGKQ
>NZ_CP041236.1|WP_141605210.1|127377_130755_-|amino-acid-adenylation-domain-containing-protein
MRCLTIGWCGTSKVLGEIRPMLEQYGHVSGDEATDLWIEDGSLPLPDDVGETTCISLRLGISPLSDGGLPALQVRAYDHDRRVFAVLDIAEEPSGNGQRLRQQATTALVDWVALLVSGFSRDPESLSTSAIATDWPEHGLHGLEPLAFMHRFNRTANPALIHEAQVPVIERVQASLDLFADRPALNIAGHTVTYRQLHLQAMAIQLRLRPLLEALEAPPVIAVCLEKSMALYASILAVLGSGAVYLPLGPDQPTQRHRAMLENAGARVLLDAGQHPLRERFISLDVSTVEPHNANSPSSLMHDRPCSDMPCMVLYTSGSTGQPKGVLLSQANLAHFTTWFGSCMTQDERSRVLQFSPLGFDSSLIEIFPALIAGAELIVPSEEQRRDPGQLLELLRRQRVTHAFLPPALLNILPPDSPLGVTHLLTGGDACEPHVIERLAGQCQLHNLYGPTETTVLITHRTFAPDDNNRNVGHPIANSQVLILDDDLQPVDEQVMGELYIVGPGVSLGYVNASPQADSPFVELLVPGGQTLRAYRSGDLAQWTAEGIVLGGRRDDQVKIRGFRVDPREIEQCLRSSRLYRELAVVIDHESRICAFVAQPEPNATLVALQQHARQWLPDYMQPGFWVELPAMPHSDNGKVDRKGLLSRPFLPLLQATPRATHTPLQARLSDLWGELLGLPTSQLPIDESFFALGGHSILLSTLLLRVREQFGRSFALSHFIEVPTIRTLATLMEEGELPDASSAQAAIDAQREWEINPLQGDRAGNPHKVIVTGANSFVGVHIVEALLNAGATEVACLVRDLPGSPAMARFTQALRDYQLEHLDLSRVRVFAADVSLPRLGLACDAYDVLAADFGALVHNAARVNHVMDYASLARDNVDPIFECLRLCETRCKKVFNFVSTLSAASSIGTTGHVLEAPAAATLPLYIRNGYNLSKWVAERVLGRAIEQGAWVNIHRPGNISFNSRNGVCQPQKNRLMLMLKGSLQLGMLPRLDLNFDLMPVDFLARFIAFHCNRFQADRSVFNLHNPQPLSWEHYLDAFNRAGHRFERVSTAHWQQALRTVSQDNAMFGVLGFYLDRLDEDIGDTSMILHHNAQRGVQQMGEQYPEKDPALLSKGCNYLKAIGFL
>NZ_CP041236.1|WP_141605211.1|130751_131690_-|diiron-oxygenase
MNTAGYTTIADDWERRATIRTRPRRLLEDDDKLIYPLCRQPLVLNSTFMEHCSQWRDFVLVQSFYKFIHDVVIFETEIVDKAARSIAKNRFSVPFPLACRVDAMTVVVDEDYHALVALDFMQQTVAMTGIQPIDLPGHIELSRALPAAQAQAPEHLSDAVELIGVAIAENTVTHDVAAFSKDRSVKASIRGLMDDHLFDEGRHAQFWTRLVRIYWQAASPEDRDSIAHVLPTFLAHYLTNDLQKNFDLRLIEHLDISERLSGVLRDEISALTFPITRQHPLMANIMGFLQHSGLLQTPSVGQVLNDYLSVSP
>NZ_CP041236.1|WP_141605212.1|131686_132445_-|DUF3050-domain-containing-protein
MYPPLLEQRKRLLCSHPLFLEITSLEKLRLFMENHVFAVWDFMTLTKRLQQDLTCTRLPWLPPADPQAARLINEIVLGEESDSHPRQGHCSHFEWYLEAMVEVGASTSAIHRFISLLHQGVEASTALRMADVPAGAARFVSDTLHIALQAPTHCVAAAFLHGRERVIPSMFEHLLQPDTLIHRQAPALCGYFRRHIELDTEHHGPAAEELLERLVGADPAYPQQAHDAALAAVESRITFWDEVRAALHEVHP
>NZ_CP041236.1|WP_092490005.1|132783_133491_-|GntR-family-transcriptional-regulator
MTQKPNPLNSIKITGPIPAHLARSVIEETLRNAILDGRLPCGTAMRQQELASLFGVSRMPVREALRQLEAQSLLHVVTHKGAVVAPLIEDNSAETYELRMLLESEALRLSIPLLTEADITEADTLICALEQEKDYTEIGRLNRLFHMTLYGKAPNQRLLKLVEHGLNEEERFLRFNLEAMGLGETSQEDHRELLNLVAQKKVEESILTLRNHLMRGMEVITTYLDNLDAAAKKTL
>NZ_CP041236.1|WP_141605213.1|133757_134651_+|TauD/TfdA-family-dioxygenase
MSATSTVPTATLTAQTFEIRPLPGSVGAEIVGLDLSRPVNDQDFARIHRAHLDHHVVVFRDQRITPEQQIAFSRRFGVLQIHVLKQFLLANHPEILIVSNIIENGQSIGLGDAGKFWHSDLSYKELPSLGSMLHAQELPSEGGDTLFADMHKAWDQLPEHLRKAVEGRSAAHSYTARYSETKFEGNWRPTLTPEQLAQVAEVVHPIVRTHPENGRKALFVSEGFTTRIVGLPEDESRDLLAQLYAHSVLPHNIYRHQWQPHDLVFWDNRSLIHLAAGCPSHLRRKLFRTTIQGDAPF
>NZ_CP041236.1|WP_092490007.1|134665_135691_+|ABC-transporter-substrate-binding-protein
MSRKTPFARLATTVGLGISLLAGSLVAPTAAQAEGEIRIAEQFGIVYLLLNVVRDQNLIEKYGKQEGLDIKVDWTQLSGGAAVNDALLSGSIDIAGAGVGPLLTIWDRTHGKQNVKAVASLGNFPYYLVSNNPKVKTIADFTDKDRIAVPAVGVSVQSRFLQYAAAKQWGDKEFNRLDKYTVAVPHPDATAALIAGGTELTGHFSNPPFQDQALANPNVHVVLNTYDLLGPNSPTVLFATEKFRNDNPKTYKAFVDALTEAAQFAQNDKGAAADTYIRVTKAKIDRAELLKIIDNPQFEFSVTPKNTYPLAEFLYRVGAIKNKPESWKDYFFQDAKPLQGS
>NZ_CP041236.1|WP_092490008.1|135692_136544_+|ABC-transporter-ATP-binding-protein
MNAPLQGHTASNLHTAAPLLAVDNVSLEYRTPERVVRATHQVSFEIDPADRYVLLGPSGCGKSTLLKSIAGFIKPCEGEIRLLGQKVEQPGPDRIVVFQEFDQLPPWKTVKQNVMFPLLASKTLPRREAEERALHYLDKVGLSAFADAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLLLWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEIHSHQYDLHSLGGVEFQASARRIHRLLFDEAPEAERELGFADIRIAY
>NZ_CP041236.1|WP_065940996.1|136556_137405_+|ABC-transporter-permease
MRQEYEINLEPLLSVPVERELPLRQRLWQQGWLRKGLILIVLAILWEAVARYQNNDLLLPSFLQTFHALYDGLLSGELLGKVSISLVVLIKGYLIGIVLAFALTTLAVSTQLGRDLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYSGFLGVSETLRMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTFERLTVKRWGMQR

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Crispr_ID: NZ_CP041236_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041236_2

2200302-2200412

Orphan

Consensus_repeat	Method
TGTAGCTTAGTTGGTTAGAGCGCACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041236_2

>merge|NZ_CP041236|2|2200302-2200412|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCCATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCC

>NZ_CP041236|2|2|2200302-2200412|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCC	ATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTC
TGTAGCTCAGTTGGTTAGAGCGCACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041236.1\|WP_141605912.1\|2198251_2198623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_141605910.1\|2193535_2194696_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|184450
NZ_CP041236.1\|WP_141605916.1\|2212658_2213291_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|239355
NZ_CP041236.1\|WP_141605917.1\|2213455_2214031_+\|DUF4174-domain-containing-protein	unknown	unknown	gnl\|CDD\|379363
NZ_CP041236.1\|WP_141605914.1\|2207182_2209420_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP041236.1\|WP_027607139.1\|2197097_2197985_-\|threonine/homoserine-exporter-RhtA	unknown	unknown	gnl\|CDD\|182525
NZ_CP041236.1\|WP_027607133.1\|2190917_2192057_-\|FMNH2-dependent-alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
NZ_CP041236.1\|WP_141605907.1\|2189674_2190862_-\|monooxygenase	unknown	unknown	gnl\|CDD\|173852
NZ_CP041236.1\|WP_141605918.1\|2214067_2215102_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226122
NZ_CP041236.1\|WP_141605909.1\|2192733_2193033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_141605913.1\|2206635_2207103_+\|vanillate-O-demethylase-oxidoreductase-VanB	unknown	unknown	gnl\|CDD\|176907
NZ_CP041236.1\|WP_141605908.1\|2192066_2192630_-\|FMN-reductase	unknown	unknown	gnl\|CDD\|211840
NZ_CP041236.1\|WP_092489792.1\|2215124_2216534_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NZ_CP041236.1\|WP_092490289.1\|2193031_2193301_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_092489795.1\|2212067_2212646_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP041236.1\|WP_027607138.1\|2196650_2196932_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_092489798.1\|2206134_2206536_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP041236.1\|WP_141605911.1\|2194735_2196544_+\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|238518
NZ_CP041236.1\|WP_092489799.1\|2204240_2206133_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP041236.1\|WP_141605915.1\|2209639_2211997_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595

Protein	Function_ID	Function_description	E-value
NZ_CP041236.1\|WP_141605910.1\|2193535_2194696_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	2.19875e-180
NZ_CP041236.1\|WP_141605916.1\|2212658_2213291_+\|glutathione-S-transferase	gnl\|CDD\|239355	cd03057, GST_N_Beta, GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.	1.32065e-19
NZ_CP041236.1\|WP_141605917.1\|2213455_2214031_+\|DUF4174-domain-containing-protein	gnl\|CDD\|379363	pfam13778, DUF4174, Domain of unknown function (DUF4174). This domain of unknown function is found in a putative tumor suppressor gene and in a ligand for the the urokinase-type plasminogen activator receptor, which plays a role in cellular migration and adhesion.	2.23501e-17
NZ_CP041236.1\|WP_141605914.1\|2207182_2209420_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.09041e-91
NZ_CP041236.1\|WP_027607139.1\|2197097_2197985_-\|threonine/homoserine-exporter-RhtA	gnl\|CDD\|182525	PRK10532, PRK10532, threonine and homoserine efflux system; Provisional.	2.91148e-125
NZ_CP041236.1\|WP_027607133.1\|2190917_2192057_-\|FMNH2-dependent-alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
NZ_CP041236.1\|WP_092489798.1\|2206134_2206536_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	3.18063e-23
NZ_CP041236.1\|WP_141605918.1\|2214067_2215102_-\|acyltransferase-family-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	8.74518e-48
NZ_CP041236.1\|WP_141605913.1\|2206635_2207103_+\|vanillate-O-demethylase-oxidoreductase-VanB	gnl\|CDD\|176907	cd08898, SRPBCC_CalC_Aha1-like_5, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	1.35085e-62
NZ_CP041236.1\|WP_092489792.1\|2215124_2216534_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	1.08797e-82
NZ_CP041236.1\|WP_092489795.1\|2212067_2212646_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.80531e-24
NZ_CP041236.1\|WP_141605907.1\|2189674_2190862_-\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	9.69532e-152
NZ_CP041236.1\|WP_141605908.1\|2192066_2192630_-\|FMN-reductase	gnl\|CDD\|211840	TIGR03566, FMN_reduc_MsuE, FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.	8.16467e-90
NZ_CP041236.1\|WP_141605911.1\|2194735_2196544_+\|M24-family-metallopeptidase	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	5.07681e-125
NZ_CP041236.1\|WP_092489799.1\|2204240_2206133_+\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP041236.1\|WP_141605915.1\|2209639_2211997_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0

>NZ_CP041236.1|WP_141605912.1|2198251_2198623_-|hypothetical-protein
MISRGVTCDADNLVDYQSDSTSTHTNCLIQLLKSGWLRAFVSTEARILQQPHLLSSDYFQKLSKISSTTSTTCACDLSSAGGEFYSVTRCCQHLFFSAFDREDRIVNSAKQHDSTNYFWASMN
>NZ_CP041236.1|WP_027607139.1|2197097_2197985_-|threonine/homoserine-exporter-RhtA
MTTSPRSLASALFPVGLLLIAMASIQSGASLAKSMFPIVGAQGTTTLRLIFASVIMLLILRPWRARLTAKSLRTVVVYGMALGGMNFLFYMSLRSVPLGIAVALEFTGPLAVAIYASRRAVDFLWIALAIIGLLLLIPMGEASSGIDLVGATYALGAGACWALYILFGQKAGNDNGVQTAALGVMIAALFVAPIGIVHAGTALLTPALIPVAIGVAILSTALPYTLEMVALTRLPARTFGTLMSIEPAFGALSGLFFLQEHLSLPQWLAISCIIMASVGATLTMRNDSKPLVPAD
>NZ_CP041236.1|WP_027607138.1|2196650_2196932_-|hypothetical-protein
MKRILILLMVVAIAGCAATTKTEVKRGKKGLHINCSGLSSSWDQCYTSATNSCGAKGYRVIAKSGDNSEEPGDYPFGLNPAGYTSRSMIVICK
>NZ_CP041236.1|WP_141605911.1|2194735_2196544_+|M24-family-metallopeptidase
MSTQPLTHGTVPQRLAHTRELMRREGIHALLVPSADPHLSEYLPGYWQGRQWLSGFHGSVGTLIVTADFAGVWADSRYWEQATKELKGSGIELVKLQPGQPGPLEWLAEQTPEGGVVAVDGAVMAVASARTLGARLAERGARLRTDIDVLDAVWKDRPSLPSQPIYQHLPPQATVSRGDKLAALRASLKEKGADWHFIATLDDIAWLFNLRGGDVSFNPVFVSFALINQQQATLFVALSKVDADLRAVLAQDGVTLRDYSDVADALRAVPSGASMQVDPARVTAGLLENLDAGVKLIEGLNPTTLAKSRKSLADAEHIRRAMEQDGAALCEFFAWLDSALGRERITELTIDEHLTAARTRRPDYVSLSFNTIAAFNANGAMPHYHATEEEHAVIEGDGLLLIDSGGQYLGGTTDITRMVPIGTPSDEQKRDCTRVLKGVIALSRAHFPKGILSPLLDSIARAPIWAEGVDYGHGTGHGVGYFLNVHEGPQVIAYQSATAPQTAMQPGMITSIEPGTYRPGRWGVRIENLVLNREAGKTEFGEFLSFETLTLCPIDTRCLEASLLTVEEREWFNAYHAEVRERLSPLLSGAALEWLQVRTTAI
>NZ_CP041236.1|WP_141605910.1|2193535_2194696_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MNKRPLYFDYAATTPVDERVIQVMVECLGFNANFGNPASSSHAFGQAARQTVEQARRQVAELVGAQPEQIVWTSGATESNNLAIKGVAQARGVAGGHIITSQIEHKATLDTARQLQEAGVAVTYLVPDADGLISAEAVSEALRDDTFLVSLMLVNNELGTLNDIPAIGARVREHGALLHVDAAQGAGKVAIDLAQWPADLMSFSAHKLYGPKGIGALYVGPRAQQKVSAQIHGGGHEGGLRSGTLATHQIAGMGAAFALAAASFAQEKAVIMALRQRLLEQLDTVGGVRLNGSPAQRIPHTLSLTFSEGEFDAAALSAGIAFSATSACNSASNAPSHVLLALGLDARSAGRTIRLSLGRFTTEQDIDQAVQLIKAALASAPAFWAV
>NZ_CP041236.1|WP_092490289.1|2193031_2193301_+|hypothetical-protein
MNRFLAVCLVIVSAILAGCASHPSPELRPYTAEESKQLALEALSRRGLSFDEYQQQRAALTGQPQKPFGFDRQGEMNAERNVVLHGRPS
>NZ_CP041236.1|WP_141605909.1|2192733_2193033_-|hypothetical-protein
MAVALGRRFRVNEHRLLPTSQSEKSPSVIVAINRQRTLDSHPPLYFLMIYKYGNTFIYGINTTFYKGLALQLHCSPRNCLPSNSHSTNHQSDNSSIFQQ
>NZ_CP041236.1|WP_141605908.1|2192066_2192630_-|FMN-reductase
MTRPLNVVALSGGTWRPSRTLVLTQAVLAELGTLLPIQTTLIELGDIARPLGGALSRDELPAEVEAQLVAIEQADLLIVAAPVYRGSYPGLLKHLFDLVGLNALIDTPVLLAATGGSERHALVLDHQLRPLFSFFQALTLPIGVYATEADFTDYQITSEPLKGRIRLAAERAAPLFAAHSPSLLKIA
>NZ_CP041236.1|WP_027607133.1|2190917_2192057_-|FMNH2-dependent-alkanesulfonate-monooxygenase
MDVFWFLPTHGDGHYLGTTQGARPVTLNYLKQVAQAADSLGYHGVLIPTGRSCEDSWVIASALVPLTERLRYLVAIRPGIISPTVSARMAATLDRLSNGRLLINVVTGGDPDENRGDGSFLDHSERYEVSDEFLQIWRRVLQGESVDFEGKHLRVQNAKALYPPVQKPYPPLYFGGSSDAAHDLAAEQVDVYLTWGEPPAAVAEKLADVRERAARHGRTVKFGIRLHVIVRETEEDAWKAADKLIEHISDETIAAAQKSFSRFDSEGQRRMAALHDGRRDNLEIAPNLWAGVGLVRGGAGTALVGNPRQVAERIKEYADLGIESFIFSGYPHLEEAYRFAELVFPLLPEPYASLAGRGITNLTGPFGEMIANDVLPAKA
>NZ_CP041236.1|WP_141605907.1|2189674_2190862_-|monooxygenase
MTAKPHSVLPSPLQTARLLAAEFALTAVERDERGGTPKTERDALRQSGLLALSIPTQYGGLGAPWSDTLAIVREFAKVDSSIAHVFGFHHLMLATVRLFSRPDQWQPWFEQTARKNWFWGNALNPLDTRTVVKDFGGWREFSGKKSFCSGASDSEMLIASAVDESAGGKLLIAAIPSGRSGITLHNDWNNIGQRQTDSGSASFERVRVEESELLLEPGPLSTPFACLRPLIAQLTFTHMFLGIAEGAFEEARNYTLTETRSWHKSSTEDVRQDPYVLHHYGEFWVALEGVRLLVERAAELLDQAWAKGPNLSENERGQLAIAIATAKVAATRQGLDLCSRLFEVTGARSTHASLRLDRHWRNLRTQTLHDPVDYKLHELGDWALNQSLPIPTFYS
>NZ_CP041236.1|WP_092489799.1|2204240_2206133_+|penicillin-binding-protein-2
MPEPIPIKDHEKENRLVNKRLLACALLVIGITCALVGRMYFLQVVQFDYHSTISENNRVHVLPITPTRGLIYDRNGVVLADNRPSYNLTITRERTTDLKGELDAIVNLLHLPVEDRALFDKALKQARHPFVPVTLFYELTEEQIALLAVNEFRLPGVDVEPQFVRHYPLGAHFAHSIGYVGRINEKESKALDSVEYRGTQSIGKTGIERFYESELHGHVGYEEVETNAQGRVLRVLKHTDPIPGKNIVLSLDVKLQEAAEEALGDRRGSVVALDPQTGEVLAMVSKPSFDPNLFVTGISFKEYAALHDSIDRPLFNRVLRGLYAPGSTIKPEVAIAGLDSGVVTPQTRVFDPGYYQLPDFDHKYRNWNHSGDGWVDMDAAIMRSNDTYFYDLAHKLGIDRLHDYLAEFGLGQKVSLDMFEESAGLMPSQAWKRATRRQPWFPGETVILGIGQGYMQVTPLQLAQATALIANKGVWNRPHLAKTINGEPPVDQNPMPNVVLKDPRDWEQVNHGMQLVMHDPRGIARAAAQGAQYRIAGKSGTAQVVAIKQGERYNREKTLERHRDNALFVGFAPAEHPKIVISVMIENGEAGGRVAGPVVRQIMDAWLLDQDGHLKPQYATPAKAPGDPHV
>NZ_CP041236.1|WP_092489798.1|2206134_2206536_-|GFA-family-protein
MTDPLNGSCFCKGVRYQVDQLDMPISHCHCASCRKIHAAPFVATAGVTREHFRWTLGEELLASFESSPGKLRHFCSRCGSHLIAERGHQPHVIVRVATLDDDPGVRPTSHIWMAHDVPWLAHEGIEQWDEWKA
>NZ_CP041236.1|WP_141605913.1|2206635_2207103_+|vanillate-O-demethylase-oxidoreductase-VanB
MHVLDRIERKVLLNASRKQVWEALANAEHFGDWFGIALKGKAFVAGETIEAPITYPGYEHVIWKAKIERILPQTLFSFWWHPFAVEKGVDYDKETPTLVEFTIEDRAPGILLRVVESGFKAVPEARRQKAFKMNSRGWDEQMGNIENYLSKARRA
>NZ_CP041236.1|WP_141605914.1|2207182_2209420_-|TonB-dependent-siderophore-receptor
MPTRSPFAVPFFPTLLALCCSLSLAAHAATPVNPQDANNRQDGSTLELGATTINADGPGPGALPPVYSGGQVARGGQLGVLGNQDIMDVPFSMASYTEKLIRDQQAETVGDVLLNDSSVRQASGYANQAQTFMIRGLPLNGDDISYNGLYGILPRQIISTDALERVEVFKGPNAFINGVTPGGSGIGGGVNLQPKRADDVPLRRFSTDISSDGRVGEHVDIGQRFGEDNRFGARVNLSQREGDTGIDDESQRSKLFALGLDYRGDALRVSSDFVYQKQRINGGRNSVFLGTATHVPDAPSADTNYAPSWSSTNLEDTLGMLRAEYDLNENWTAYAAAGAKHSREMGQYSSVTLTDNLGNATSSRSTIAHEEDNSSLMSGLNGKFQTGAVSHRLNFGLAGIWTQARNAYVFNGSPSATNIYAPVTGAPPTLNNPRNTPGTDFSDPTITAKTFVRSVAVSDTLGFFDDRLLVTVGARRQQMVVQGYNYMSGTRTANYDESITTPVYGIVFKPWEHVSVYANRIEGLAQGPVSPLVAGTRTVIGGGQAYAPARSKQIEAGVKVDMGTYGATLGVYRIEQPGAGYSEVVDATTARYVREGQQINKGVELNVFGEPVSGLRLLGGVTMMKTELKDTQNGANDGNRAIGVPSFQLNAGVDWDVPTLQGVTLNGRMLRTGGQYADAANNLSLPAWNRFDIGARYTFTLDQRDVTLGVTVENVANEKYWESAQGGFLSQGDPRVAKLSATVDF
>NZ_CP041236.1|WP_141605915.1|2209639_2211997_+|DNA-polymerase-II
MDLQQGFVLTRHWRDTPAGTEVSFWLATDQGPRFIRLPVQTSVMFIPEVHRKPLDWLLKGERDIELRSLQLCDFHHRPVLGLYTRQHRQLMDVEKRLRAAGVDVYEADVRPPERYMMERFITAPVWFGGTADAGGALCDAQMKPAPDYRPPLKLVSLDIETTAQGDLYSIALEGCGERQVYMLGPPNKTDAVDFKLDYCDTRVQLLECLNQWLATHDPDAIIGWNVVQFDLRVLHEHAQRLNVPLMLGRGDEPMAWREHGSRNHYFAAAAGRLIIDGIEALRSATWSFESFSLENVAQTLLGEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKFLLERASVTGLPADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRPGLYESVLVLDYKSLYPSIIRSFLIDPVGLIEGLKHPDDSDSVEGFRGARFSRTRHCLPAIVARVSEGREEAKREHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTRELVEAQGYEVIYGDTDSTFVWLGSAHSQDDASRIGQALVKHVNAWWREHLHSAFGLQSALELQYETHFSRFLMPTIRGAEEGSKKRYAGLVVRADGSEEMIYKGLETVRSDWSPLARRFQQELYQRIFHRQPHQDYIRDYVRRTLSGEFDELLIYRKRLRRQLDDYERNVPPHVRAARLADEYNDRLGRPRQYQRGGWIRYVISVNGPEPLEVRQAPIDYDHYVTRQLQPVADAILPFVSDDFSTLVGGQMGLF
>NZ_CP041236.1|WP_092489795.1|2212067_2212646_+|GNAT-family-N-acetyltransferase
MTLLTLTGTTVELQPLQREHAAALLAAAADGELWNLKVTHVPGPDTVDNYIATALAGREAGSMIPFTLVRRDTGQVVGSTRFWKVDRVNRKLEIGHTWLAQSTQKSAINTEAKLLLLTYAFEVLNCVRVQFTTDELNEKSRAAILRLGAVQEGIVRHERIMPDGRKRNSVRFSIIDSEWPQVKVNLQAKLQR
>NZ_CP041236.1|WP_141605916.1|2212658_2213291_+|glutathione-S-transferase
MYTLYGIDESGSCMIEIALQRCAVPWRRVDAASWADGEGSDELARINPLKQVPTLVTPDGQVLTESAAILIHLGLAFPDAHLLGGDRDQIIRGLVYIAANCYSAIGIIDYPQRWLGNADEAVQTQLTTGTRRYLHQAWVVFAEQFAGQLFAPDGAPNALGIMAAAVSRWDEAREALTALAPGFAQTLAQVDADPIVAPVFARHWPGWKVL
>NZ_CP041236.1|WP_141605917.1|2213455_2214031_+|DUF4174-domain-containing-protein
MLIRSLTLATLMAFTGPLLAADDINPLKQDLGKARPLVVVELDSGNDTLATLKKQLDEPATKQSFEERSMVFYTVKFGSIGAEGEKFAKDPKDNKKLTPPETNALIRALKLGAGSGTKVILVGKDGEKKVEKTVPPDTLDLKEFFSAIDQMPMAEKETTAAPEPEPVAPAPAKGAKPAKHAGKPAAQQLDD
>NZ_CP041236.1|WP_141605918.1|2214067_2215102_-|acyltransferase-family-protein
MKNRWIQMDIAKGIGILVIVYAHSWFVATSPDLMYPILASFVLPLFFFLSGVFFKPEQPFVEMAVRKADGLLKPFFFTMLVYVIVRDVLRGQPLLPDIGGVLYASVDTIPWQALWFLPHFWVAILFSWAVLRLIQRLPLAVSCAVMLVPLLIGIWMLPWFWQLPVTLGGQTWVLPGLPFSLDITLISSACFVYGYLLRDWLRTHAGSLLTLLVSGVLFAAVFLYRGDTMDLAQRRYDHWLWTSLLAVIGVYLCWALARMLMASALITRVMTYIGQSTLILLIFHGEIQHKTFDLMERLGLHAFVAACIGFVVAVVVPLLIGEVIKRVAFLRFFYFPFPQRKAAG
>NZ_CP041236.1|WP_092489792.1|2215124_2216534_-|murein-biosynthesis-integral-membrane-protein-MurJ
MLGSAAWLTLATLVGLCLGFAREWLLVAAWGAGERSDAFLIALFLPEALRMSLAGGVLSAAALPLYLQRKHGERLEWLAVLFPALLLIALVISLLLTLLAPWLVQMLGPGLADTATVLASSNLQIVAWCVPGLMLHGLFSIPLQAGERFVLAGLGSLLFNLPPVTYLALAGTTSQPHALALACLAGSLLMPLALLPSVWRQGWRPWRWQLSFAPLRELGQRIGPLLLSNGASQGLALIERLVASLLGEGAVTWVNLARKLMNLPLIALMSLNQVLLGMMSRRQGDERLALLKRGLETASVLTLPAGVGLVAAAPSLVALLLPRQSTDSPLPLLLAWFAVPLVFGAWNALLARYAYAAGDTRQPLRCELLGSLVNVLLLAALPLVFGLAGIPLAALAGVLCTALLLMQRQALLDALPWARHWLLSALLMGLAALMLFGIEGVWLQLGLSTLAGAVVLLGMGLWLKPWRKA

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Crispr_ID: NZ_CP041236_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041236_3

4400255-4400486

Orphan

Consensus_repeat	Method
CAGACACAACACAAATCAAAGGTGGGAGGGGGCAAGCCTCCTCCCACATT	PILER-CR

2 spacers

csa3

The CRISPR arrays of NZ_CP041236_3

>merge|NZ_CP041236|3|4400255-4400486|PILER-CR
CTGACACAACACAAATCAAAGGTGGGAGGGGGCTTGCCTCGATGGCGGTGCATCAGTCAATTAGATGTCGACTGACACTCTGCTATCGGGGGCAAGCCCCCTCCCACATTGGTTCTCTGTTTGTCAGGGCCGGCCGAGCAGGTGGCTCATGGCAGTCTTGAGCATCAGCGCCGCCAATCTTCCAGACACAACACAAATCAAATGTGGGAGGGGGCAAGCCTCCTCCCACATT

>NZ_CP041236|3|1|4400255-4400486|PILER-CR
CTGACACAACACAAATCAAAGGTGGGAGGGGGCTTGCCTCGATGGCGGTG	CATCAGTCAATTAGATGTCGACTGACACTCTGCTATCGGGGGCAAGC
CCCCTCCCACATTGGTTCTCTGTTTGTCAGGGCCGGCCGAGCAGGTGGCT	CATGGCAGTCTTGAGCATCAGCGCCGCCAATCTTCCAGACACAACACAAATCAAATGTGGGAGGGGGCAAGC
CTCCTCCCACATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041236.1\|WP_141606783.1\|4400515_4402456_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP041236.1\|WP_074847233.1\|4402397_4403543_-\|GfdT-protein	unknown	unknown	gnl\|CDD\|225825
NZ_CP041236.1\|WP_141606785.1\|4404516_4405761_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223523
NZ_CP041236.1\|WP_141606779.1\|4395224_4396397_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274821
NZ_CP041236.1\|WP_065884833.1\|4410881_4411940_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP041236.1\|WP_092490225.1\|4407164_4408790_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP041236.1\|WP_141606786.1\|4409644_4410880_+\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NZ_CP041236.1\|WP_092490230.1\|4399019_4399568_+\|PQQ-dependent-catabolism-associated-CXXCW-motif-protein	unknown	unknown	gnl\|CDD\|274823
NZ_CP041236.1\|WP_027606189.1\|4408966_4409449_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041236.1\|WP_092490236.1\|4390367_4392260_+\|PQQ-dependent-dehydrogenase,-methanol/ethanol-family	unknown	unknown	gnl\|CDD\|274419
NZ_CP041236.1\|WP_141606778.1\|4393170_4393797_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP041236.1\|WP_141607690.1\|4393793_4395056_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP041236.1\|WP_141606780.1\|4396427_4397387_+\|PQQ-dependent-catabolism-associated-beta-propeller-protein	unknown	unknown	gnl\|CDD\|274824
NZ_CP041236.1\|WP_017527038.1\|4405812_4406148_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP041236.1\|WP_141606782.1\|4398120_4398912_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|163573
NZ_CP041236.1\|WP_092490235.1\|4392487_4393135_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP041236.1\|WP_010209341.1\|4399583_4400249_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP041236.1\|WP_141606784.1\|4403709_4404516_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|376667
NZ_CP041236.1\|WP_092490226.1\|4406242_4407106_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP041236.1\|WP_141606781.1\|4397383_4398124_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274822

Protein	Function_ID	Function_description	E-value
NZ_CP041236.1\|WP_141606783.1\|4400515_4402456_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.65971e-43
NZ_CP041236.1\|WP_074847233.1\|4402397_4403543_-\|GfdT-protein	gnl\|CDD\|225825	COG3287, COG3287, Uncharacterized conserved protein [Function unknown].	1.01171e-111
NZ_CP041236.1\|WP_141606785.1\|4404516_4405761_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	3.31414e-28
NZ_CP041236.1\|WP_141606779.1\|4395224_4396397_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274821	TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.54937e-180
NZ_CP041236.1\|WP_065884833.1\|4410881_4411940_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP041236.1\|WP_092490225.1\|4407164_4408790_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	8.22826e-64
NZ_CP041236.1\|WP_141606786.1\|4409644_4410880_+\|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	6.61986e-141
NZ_CP041236.1\|WP_092490230.1\|4399019_4399568_+\|PQQ-dependent-catabolism-associated-CXXCW-motif-protein	gnl\|CDD\|274823	TIGR03865, PQQ_CXXCW, PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.	1.15119e-71
NZ_CP041236.1\|WP_027606189.1\|4408966_4409449_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.3655e-46
NZ_CP041236.1\|WP_092490236.1\|4390367_4392260_+\|PQQ-dependent-dehydrogenase,-methanol/ethanol-family	gnl\|CDD\|274419	TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.	0
NZ_CP041236.1\|WP_141606778.1\|4393170_4393797_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.00672e-61
NZ_CP041236.1\|WP_141607690.1\|4393793_4395056_-\|HAMP-domain-containing-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.15451e-42
NZ_CP041236.1\|WP_141606780.1\|4396427_4397387_+\|PQQ-dependent-catabolism-associated-beta-propeller-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	0
NZ_CP041236.1\|WP_017527038.1\|4405812_4406148_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.61469e-16
NZ_CP041236.1\|WP_141606782.1\|4398120_4398912_+\|ABC-transporter-permease-subunit	gnl\|CDD\|163573	TIGR03861, ABC_efflux_transporter_permease_protein, alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.41328e-143
NZ_CP041236.1\|WP_092490235.1\|4392487_4393135_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.69149e-29
NZ_CP041236.1\|WP_010209341.1\|4399583_4400249_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.04955e-60
NZ_CP041236.1\|WP_141606784.1\|4403709_4404516_-\|TSUP-family-transporter	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.01234e-22
NZ_CP041236.1\|WP_092490226.1\|4406242_4407106_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.58028e-64
NZ_CP041236.1\|WP_141606781.1\|4397383_4398124_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274822	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.67992e-122

>NZ_CP041236.1|WP_010209341.1|4399583_4400249_+|response-regulator-transcription-factor
MYKILIADDHPLFREAIHNVISDGFPGSEVMETADLDSALALTQEHDDLDLILLDLNMPGMHGLNGLINLRNEAPTIPVVIVSAEQDKQVVLQAITYGAVGFITKSSPRLQMTEAIQQILNGNVYLPPDIIRTQKPGTHRRLNENPGFAPELLQALTRKQLLVLERMTKGESNKQIAYTLEIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFGSYLRR
>NZ_CP041236.1|WP_092490230.1|4399019_4399568_+|PQQ-dependent-catabolism-associated-CXXCW-motif-protein
MLPARLPLLALLCLFVAHVQADAPLFSAEGYRISLYRSPTPDHLPGATIVDTAALQTLLNQSPAPVLIDVYRRQWLQGRFIEDQPHANLPGSHWLANTGDGDLTPEWQSYFVRHLYAYSGGDLKRPLVFYCRSDCWLSWNAVKRAANLGYTSVYWYRDGLDAWEAAKLPVTVAQPEPFQTSQ
>NZ_CP041236.1|WP_141606782.1|4398120_4398912_+|ABC-transporter-permease-subunit
MNAYWQCLRGIVLREWLRFVLQRTRFLSALVRPLLWLLVFAAGFRAALGISVIEPYDTYIPYEVYIIPGLACMILLFNGMQGSLSMVYDREMGSMRVLLTSPLPRTFLLCSKLLATALISLLQVYGFLAIAWVYGVQPPAMGLVVALPALLLVALMLSALGLLLSNAIRQLENFAGVMNFVIFPLFFLSSALYPLWKMRDSSEWLYWLCAVNPFTHAVELVRFALYERFAGPALAVCLGLTVLFAVLAVLTFNPQHAALRKKG
>NZ_CP041236.1|WP_141606781.1|4397383_4398124_+|ATP-binding-cassette-domain-containing-protein
MNALEVRDLSFAYGARQALCEVNFSLAPGRFAALLGPNGAGKSTLIALLTRLYDLQSGDIRVGGHSLREAPRAALTQLGVVFQQSTLDLDLSVEQNLRYHAALHGLSRRQTDLRVAAELARQVLTERRREKVRELNGGHRRRVEIARALLHEPRLLLLDEASVGLDPASRLALNQHVRGLCREQGISVLWTTHLLDEVQADDALMILHQGRLVASGQVAALIAQQGGDLGSVFAHLTRPTTTGAAA
>NZ_CP041236.1|WP_141606780.1|4396427_4397387_+|PQQ-dependent-catabolism-associated-beta-propeller-protein
MRRTLLPCALLLAAGHAMASTAWVSNEKDNSLSLIDMQTLQVTDTLKVGQRPRGLLLSHDNKLLYICASDSDRVQVMDVVTRRIIKELPSGKDPEQFALHPNNRWLYVSNEDDALVTVIDTETSKVLGQINVGVEPEGMAVSPDGKWAVNTSETTNMLHWIDTSTQTLADSTLVDQRPRFVEFNHDGSQLWASAEIGGTVTILDVASRAILKTLTFKIKGVHPDKVQPVGIKLSADGKYGFVALGPANHVAVIDARTFEVLDYLLVGRRVWQMAFTPDEKQLLATNGVSGDVSVIDVDSLKVIKSVKVGRYPWGVVVTP
>NZ_CP041236.1|WP_141606779.1|4395224_4396397_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MRQLAPYAVICLLAIAWAATGQAAEAPLQVQIGYLGYRPDPGPLLSNVIAEPADTGQRGAELAIIDSNSTGAFLNQRYSLTSATVDTPDALLAAAQTQHAQGLRLFVINAPAASLRQLSAALPDSLLFNAGSPDDRLRSSDCLGNVLHTLPSRAMLADALAQFLVVRKWQKALLIVGPTEDDQAYAAALRRAAKRFGVQLVAEKAWRFDNDQRRSAQADMPLFTQTAEYDVVLVADERGDFGEYVPYQTWYPRPVAGTQGLTPTGWHKTVETYGAAQLQKRFEALAGRWMNDRDFAAWMAVRSVASAVSKLRQVEPMAIRQVEISEQLPLDGFKGRKLSYRPWNGQLRQPIPIVQPRALVSTSPQDGFLHPTNEMDSLGYDKPEVTCRFP
>NZ_CP041236.1|WP_141607690.1|4393793_4395056_-|HAMP-domain-containing-protein
MSALWRINLWVCGFFALVTCACTALLLHQALADVERELQSAEAVVHYLSETAERDPASLQPHLTASLRHVRVHWLASGDTVQAPDADGLDAWLGQLLFAEARRSAQVLDLPDGRRVSIAVDPRDEIDEVWDSLQQLLGLCALALALSLLTIRWAVRRGMGVLDELLRALQQVCAGQLNVRLRSQGAPEARQLALHFNRMTDALEQARTDNTRLTQTLLAVQEQERTHLAQTLHDDLGQYLAGIRAQACLLRLATDQPHLLASTVAQLEDHCEHLQQGFRALVHDLYPVALQHLPMAEAFALLVTQWQASHGIPCHLQVSTDLPLLPGASKTHLYRLLQEALTNILRHADASQVHVRLQHHGSRLRLWVRDNGRGAPPPQRPGVGLYSMAERARCLGGELKIISHPGAGWALALNMPLEAS
>NZ_CP041236.1|WP_141606778.1|4393170_4393797_-|response-regulator
MNILLVDDHAVVRQGYASLLRALLPAVEVREAASGEEALSRVQEALPHLVIMDFGLPGISGLETTRRLRQRLPHLRVLFFSMHDELPLVRQALEAGASGYLTKSSAPEVLIEAVRRILDGHAYIEQALATELAYTPGDQRLQGMTPRELEIFLMLARGTPTRAIADQLNISSKTVSNHLTLLKSKLQVSSHAELVHLGIDMGVVRVVG
>NZ_CP041236.1|WP_092490235.1|4392487_4393135_+|pentapeptide-repeat-containing-protein
MNYLPLLLLLCLPVAHAEDGDDAPLIINGCTIAEHSQCPGANLKGANLRNQDLSKMNLAGADLREADLRHANLDLANLEKARLQGANLTRASLQQANLRLADFSGATLMAIQGWGLFAQGAQFENANLSAAYLQFARLSGAKMHKANLRAADLEMTWLSKADLQGADLSDANLQEAKFGESNLEQATLTGSRQHYANFQDANMEGCIDCPTTWDR
>NZ_CP041236.1|WP_092490236.1|4390367_4392260_+|PQQ-dependent-dehydrogenase,-methanol/ethanol-family
MTIRSLPARSPLSLAVQTFVLVGSLSLSAVTFAAAEPAKPTHNVTWEDIANDHLTTQDVLQYGMGTNAQRWSPLAQVNDKNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVVYVTGSYSRVFALDAKTGKRLWTYNHRLPDNIRPCCDVVNRGAAIFGDKIYFGTLDARLIALDKNTGKVVWNKKFGDHAAGYTMTGAPVLIKDKVSGKVLLIHGSSGDEFGVVGQLFARDPDTGEEVWMRPFVEGHMGRLNGKDSTTTGDVKAPSWPDDPTTATGKVEAWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKDGNPHDFDSLYTSGQVGVDPSTGEVKWFYQHTPNDAWDFSGNNELVLFDYKDKDGKVVKATGHADRNGFFYVVDRNNGKLQNAFPFVDNITWASHIDLKTGRPVENEGQRPAKPLPGETKGKPVEVSPPFLGGKNWNPMAYSQDTGLFYIPGNQWKEEYWTEEVNYKKGSAYLGMGFRIKRMYDDHVGTLRAMNPTTGKVVWEHKEALPLWAGVLATKGNLVFTGTGDGFFKAFDAKTGKELWKFQTGSGIVSPPITWEQDGEQYVGVTVGYGGAVPLWGGDMAELTKPVAQGGSFWVFKIPSWDQKTAQK
>NZ_CP041236.1|WP_141606783.1|4400515_4402456_-|PAS-domain-containing-protein
MACISTRPSPGSPLPEAGAELLAQVAQLQQDNHKLARINAALIERIESGMAQGNNPYTTFQHSVVLAEQVRERTDALNQAMAELKASNHLLINARLRAETLRGEQAAAQKAQESERWIRLITDNVPALIGYLNADLVYEFTNKVYEEWYCWPRGMMLGQSLREVHSEQHCQRLDAYVARALAGESVTFEFAETNINNQERYMLRSYVPNMLASGEVVGIFVLIRDITERRRTAEALHQAYQHLEQRVAQRTSELTALNDQLLQEIDERRRMEARLREAKLEAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALLERPSETLVRNVSNSLEDVENLLGTLVDISKLDAGVIKADIAPFALSELLDNLAVEYTELARSEGLELHFVGCSALVRSDIQLLARILRNLLSNALRYTYKGRVVLGCRRQHQRLSIQVWDSGMGIAEERLEEIFQEFKRGDVQRPDQDRGLGLGLAIVEKIAGILGHRISVKSWPGKGSMFSVEVPLSATAPKSLPMLAMSEPMLERLQGARVWVLDNDAAICAGMRTLLEGWGCQVITALSEQDLARQVDNYHAEADLLIADYHLDDDQNGVDAVARINGRRGRAIPALMITANYSNELKLQIRELGHTLMHKPVRPMKLKTAMSHLLGK
>NZ_CP041236.1|WP_074847233.1|4402397_4403543_-|GfdT-protein
MHNSEGVVSAMSQATDAGQAAEELARQLLHPYLGFVLFFCSASYDLQALGRALQECFGNVRVVGCTSAGEITPQGYGRNCITAMGFNHAHFSIATELIDQVEHFSLIDAQQMVERLVGGCRSNTLAPIKGNTFALTLLDGLSSREEMVLAALSAALGDIPHFGGSAGDDNFLTHTHVYFNGAFHSGAAVVVLVNTWLDFEVFTTHHILPRSEKLVVTGADSPSRRVFELNAEPAAEEYARHIGVAVADLDHRVFAAHPLAVRIHDQYYVRAIQQVHDDLSLSFYCAVENGIVLTVMKPGPILPNLQTLFDGLQARLGDLLLTIGCDCFLRRLELEDSGNLEQIGGFLRDQRVMGFNTYGEQFNGMHINQTFTGVAIARGRR
>NZ_CP041236.1|WP_141606784.1|4403709_4404516_-|TSUP-family-transporter
MLLASVLGMLMGLVMGLTGAGGGILGVPALVLGLGLTMTQAAPVSLLAVGAAAAVGAIDGLRHGLVRYRAALLIALLGALFSPVGVFLAHQMPEPVLMGLFSALMVLVAWRMLQREKLEAGPSDHGAASWGQKNCMLNQQTGRLAWTAKCSATLAALGAVTGAVSGLLGVGGGFLIVPAFKQLTDVQMRGIVATSLMVISLISLIGVAGAFHAGVRIEPMGWVFIAASIVGMLIGRRLCSVIAARTLQVGFASLCVLVAIGMLVNAVL
>NZ_CP041236.1|WP_141606785.1|4404516_4405761_-|NAD(P)/FAD-dependent-oxidoreductase
MTDQHWGPTISGDIVVIGGGSAGIGLLASLLKRDPDLNITLIEPSDHHCYQPAWTLVGGGAYDLEKTRRPLADVLPNGVTWVQAAVTELLPDEDTLVLDSGQRVTWNNLIVCPGLRLAWEKVEGLEETLGQHGVTSNYSYESAAYTWQLVQQLKGGKAIFTQPAMPIKCAGAPQKAMYLSCDHWLRQGDLKHIDVEFNLAGAALFGVATFVPPLMKYVEKYHARLAFNANLVKVDGPARKAWFEVKDAEGNVTVEEKSFDLLHVVPPQVAPDFIRHSPLADAAGWCEVNPHSLQHLRYPHIFGLGDVCGTTNAKTAAAVRKQIVVVAENLLALRKQAPLPLKYDGYGSCPLTVEKGKVVLAEFGYGGKLLPTFPLDPTRARRSMWFLKATLLPWFYWNGMLKGREWLTRLSKVD
>NZ_CP041236.1|WP_017527038.1|4405812_4406148_-|winged-helix-turn-helix-transcriptional-regulator
MESTLSEGEVAQLRASASKACALLKALANEDRLLILCQLTQGERNVGELETMTGVRQPTLSQQLGILRDEGLVATRREGKYIFYGLASHEVIQVMKTLSGLYCGAVIKSWA
>NZ_CP041236.1|WP_092490226.1|4406242_4407106_+|MBL-fold-metallo-hydrolase
MSALIHSFLDEASSTYTYVVYETDGGPCAIVDSVLNYDPASGRTDTAQADKVIAFVREHGLQVQWLLETHAHADHLSAAPYLRRTLGGKIAIGQSISKVQDVFKHLFNLEPEFRVDGSQFDHLFAPDEIFHIGTIKAQALHVPGHTPADMAYLIDDRLILVGDTLFMPDVGTARCDFPGGDARQLYASMRKLLAFAPDTQLYVCHDYPPEGREAKCLTSVAEQRAGNIHVHDGVDEAAFVAMRTQRDAGLGMPTLLLPAIQVNVRAGHMPPAEENGVVYLKIPLNQL
>NZ_CP041236.1|WP_092490225.1|4407164_4408790_-|methyl-accepting-chemotaxis-protein
MSMRALKLNFRTTLCFGLVCLLLLIQGAMTLIKVDKVYSSTVEIETNWLPSIRLAGEIDSAFYKLRLDLRRYAMDISRQDPASLEKLKATRTEALEIAERYGPLVSGPEEQAKYNDALTGIKNYSQKIDEFLAQASTLSAEQMSTYLREVNGPIALDVQRSISELIALNERGSKAAVQVASSEYDAARLFTWILMAASLLITVVVASLFTRSIITPVRELLVSTGKIADGDLRVAIAINGNDELTALQRSTASMQMNLKSTLQHISEASGQLASAAEEMSAITRESSAGIERQSMETDQAATAVNQMTAAVEEVARNAVSASQSTQDSQRSAKVGQERVTQTIASIEKLSATVQQTGVEVEGLAKQAQDIARVVEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQTSTQEIEQMIAKIQTCSSEAVSSMALNRNEAVDSLKIAHEAGLAITQITEAIADINDRNLLIATASEEQAHVARSVDQNLISIRDLSIQSSSAAGQTSIASQELSRLAVDLKQIVSKFAVA
>NZ_CP041236.1|WP_027606189.1|4408966_4409449_-|Lrp/AsnC-family-transcriptional-regulator
MRKLDRTDIGILNALQENARITNADLARSVNLSPTPCFNRVKAMEELGLIREQVTLLDADLLGLHVNVFIHVSLEKQNELALQQFEGAISDRPEVMECYLMAGDPDYLIRVLVPTIQSLERFMMDFLTKVPGVANIRSSFALKQVRYKTALPLPPGGLMV
>NZ_CP041236.1|WP_141606786.1|4409644_4410880_+|3-methyl-2-oxobutanoate-dehydrogenase-(2-methylpropanoyl-transferring)-subunit-alpha
MNQPYAPLRLHVPEPSGRPGCKTDFTYLRLTDAGTVRKPAIDVEPADTADLAKGLIRVLDDQGQALGPWAEGVPVEVMRKGMRAMLKTRIFDNRMVVAQRQKKMSFYMQSLGEEAIGSAQALALNIDDMCFPTYRQQSILMARDVPLVDLICQLLSNERDPLKGRQLPIMYSVKDAGFFTISGNLATQFVQGVGWGMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEATTFAGRGVGCGIASLRVDGNDFIAVYAASAWAAERARRNLGPTLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIRIGQWSEEEHAAVSAELEAEVIAAQKQAEQYGTLAGGQIPSAATMFEDVYKEMPEHLKRQRQELGI
>NZ_CP041236.1|WP_065884833.1|4410881_4411940_+|alpha-ketoacid-dehydrogenase-subunit-beta
MNDHNNSIELETAMTTTTMTMIQALRSAMDVMLERDDNVVVFGQDVGYFGGVFRCTEGLQTKYGSSRVFDAPISESGIIGVAVGMGAYGLRPVAEIQFADYVYPATDQIISEAARLRYRSAGQFTAPLTMRMPCGGGIYGGQTHSQSIEAVFTQVCGLRTVMPSNPYDAKGLLIASIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPQAQVPDGYYTVPLDVAAIVRPGSAVTVLTYGTTVYVSQVAAEETGIDAEVIDLRSLWPLDLDTIVKSVKKTGRCVVVHEATRTCGFGAELVALVQEHCFHHLEAPIERVTGWDTPYPHAQEWAYFPGPSRVGAALKRVMEV

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Crispr_ID: NZ_CP041236_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041236_4

5782090-5782200

Orphan

Consensus_repeat	Method
GGGGTGCGCTCTAACCAACTGAGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041236_4

>merge|NZ_CP041236|4|5782090-5782200|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACAGACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCATGGGGTGCGCTCTAACCAACTAAGCTACA

>NZ_CP041236|4|3|5782090-5782200|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACA	GACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCAT
GGGGTGCGCTCTAACCAACTAAGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041236.1\|WP_092489667.1\|5786092_5786659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_027605409.1\|5772589_5773504_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP041236.1\|WP_141607237.1\|5786733_5788086_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP041236.1\|WP_065937840.1\|5785606_5785864_+\|colicin-transporter	unknown	unknown	gnl\|CDD\|281508
NZ_CP041236.1\|WP_065924871.1\|5769297_5770080_-\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP041236.1\|WP_092489902.1\|5776947_5777997_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP041236.1\|WP_141607239.1\|5789158_5789704_+\|cytochrome-B	unknown	unknown	gnl\|CDD\|226184
NZ_CP041236.1\|WP_003194020.1\|5768503_5768995_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP041236.1\|WP_003175971.1\|5770998_5771814_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP041236.1\|WP_003175975.1\|5775444_5775783_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP041236.1\|WP_048722823.1\|5788892_5789159_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP041236.1\|WP_141607236.1\|5770082_5770853_-\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|223639
NZ_CP041236.1\|WP_027607590.1\|5784758_5785130_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377953
NZ_CP041236.1\|WP_027607596.1\|5788082_5788745_-\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_CP041236.1\|WP_092489666.1\|5784404_5784734_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_027605408.1\|5773513_5775382_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP041236.1\|WP_092489670.1\|5789726_5790995_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|372469
NZ_CP041236.1\|WP_015885750.1\|5771922_5772465_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|183072
NZ_CP041236.1\|WP_141607241.1\|5790994_5791594_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_015885753.1\|5775826_5776951_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642

Protein	Function_ID	Function_description	E-value
NZ_CP041236.1\|WP_027605409.1\|5772589_5773504_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	3.76019e-144
NZ_CP041236.1\|WP_141607237.1\|5786733_5788086_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	4.40852e-65
NZ_CP041236.1\|WP_065937840.1\|5785606_5785864_+\|colicin-transporter	gnl\|CDD\|281508	pfam03513, Cloacin_immun, Cloacin immunity protein.	2.68808e-27
NZ_CP041236.1\|WP_065924871.1\|5769297_5770080_-\|serine-O-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	6.86489e-100
NZ_CP041236.1\|WP_092489902.1\|5776947_5777997_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP041236.1\|WP_141607239.1\|5789158_5789704_+\|cytochrome-B	gnl\|CDD\|226184	COG3658, COG3658, Cytochrome b [Energy production and conversion].	3.10634e-44
NZ_CP041236.1\|WP_003194020.1\|5768503_5768995_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	9.84715e-84
NZ_CP041236.1\|WP_003175971.1\|5770998_5771814_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	2.68083e-124
NZ_CP041236.1\|WP_003175975.1\|5775444_5775783_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	4.70256e-48
NZ_CP041236.1\|WP_048722823.1\|5788892_5789159_+\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	2.44973e-30
NZ_CP041236.1\|WP_141607236.1\|5770082_5770853_-\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	1.89925e-111
NZ_CP041236.1\|WP_027607590.1\|5784758_5785130_+\|PH-domain-containing-protein	gnl\|CDD\|377953	pfam08000, bPH_1, Bacterial PH domain. This family contains many bacterial hypothetical proteins. The structures of Structure 3hsa and Structure 3dcx show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response.	6.61443e-40
NZ_CP041236.1\|WP_027607596.1\|5788082_5788745_-\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	3.39943e-80
NZ_CP041236.1\|WP_027605408.1\|5773513_5775382_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP041236.1\|WP_092489670.1\|5789726_5790995_+\|exo-alpha-sialidase	gnl\|CDD\|372469	pfam13088, BNR_2, BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases.	3.46009e-98
NZ_CP041236.1\|WP_015885750.1\|5771922_5772465_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	4.73804e-92
NZ_CP041236.1\|WP_015885753.1\|5775826_5776951_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0

>NZ_CP041236.1|WP_092489902.1|5776947_5777997_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVADFTFELPDSLIARHPLAERRASRLLTLDGASGILAHRQFTDLLEHLRPGDLMVFNNTRVIPARLFGQKASGGKLEILVERVLDSHRVLAHVRSSKSPKPGSSILIEGGGEAEMVARHDALFELRFVEEVLPLLDRVGHMPLPPYIDRPDEDSDRERYQTVYSQRLGAVAAPTAGLHFDQLLLDAIAAKGVETAYVTLHVGAGTFQPVRVDNIEDHHMHSEWLEVSQDVVDAVNACKARGGRVVAVGTTSVRSLESAARDGVLKPFSGDTDIFIYPGRPFHVVDCLVTNFHLPESTLLMLVSAFAGYPETMAAYKAAIDNGYRFFSYGDAMFITRNPAPRGPEEQL
>NZ_CP041236.1|WP_015885753.1|5775826_5776951_-|tRNA-guanosine(34)-transglycosylase-Tgt
MSRMSFELLATDGKARRGRLTFPRGTVETPAFMPVGTYGTVKGMLPRDIVATGAEIILGNTFHLWLRPGTEVIKKHGDLHDFMKWQGPILTDSGGFQVFSLGAMRKIKEEGVTFASPVDGSKVFMGPEESMQVQRDLGSDIVMIFDECTPYPADEDVARISMELSLRWAQRSKNAHGDNTAALFGIVQGGMHESLRKRSLEGLDKIGFDGLAIGGLSVGEPKHEMIKVLDYLPGLMPADKPRYLMGVGKPEDLVEGVRRGVDMFDCVMPTRNARNGHLFIDTGVLKIRNAFHRHDDSPLDPTCDCYTCQNFSRAYLHHLDKCGEMLGSMLNTIHNLRHYQVLMAGLREAIQQGTLAAFVDAFYAKRGLPVPPLD
>NZ_CP041236.1|WP_003175975.1|5775444_5775783_-|preprotein-translocase-subunit-YajC
MSFFISNAMADAAAPAAAGPMGGGFEWIFLVGFLVIFYLMIWRPQAKRAKEQKNLLGSLQKGDEVVTTGGIAGKITKVSDAFVVLEVSDTVEMKFQKGAIAATLPKGTLKAI
>NZ_CP041236.1|WP_027605408.1|5773513_5775382_-|protein-translocase-subunit-SecD
MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQITGASTSLQVNQADLERASKALADAGIQVKAATLAAGAKGGLLRLTKQEDQLPAKDVVRKAMGDDYVVALNLAQTTPQWLRSIGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQLGFSDEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASRATSEEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDAALWGMLFVSLFIIAIYRFFGIIATVALAGNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI
>NZ_CP041236.1|WP_027605409.1|5772589_5773504_-|protein-translocase-subunit-SecF
MLRTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTLVRSELVKAGYHEAIVQSFGATTDLLVRMPGEDPQLGHQVAEALQKVGGDNPASVKRVEFVGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVIVTVGILAYFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKASLIENINISTTQTLLRTMATSISTLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWLNLNSEDLIPPAATGKEVDDRP
>NZ_CP041236.1|WP_015885750.1|5771922_5772465_-|glycine-zipper-2TM-domain-containing-protein
MNKSLLVGAVLGAVGVTAGGAVATYSLVKSGPEYAQVLAVQPVKTQIKTPREVCKDVAVTRQKPVQDQHQIVGTVVGALAGGLLGNQVGGGNGKKLATVAGAVGGGYAGNKVQEGMQNRDTYTTTQTRCNTVNDISDKVVGYDVRYTLDGKEGSVRMDRDPGGQIPVDKEGRLVLGQNQQ
>NZ_CP041236.1|WP_003175971.1|5770998_5771814_+|inositol-monophosphatase
MQPMLNIALRAARSASELIFRSIERLDTIKVDEKDAKDYVSEVDRAAEQKIIDALRKAYPTHGILGEETGLHKGSGEGEDYLWIIDPLDGTTNFLRGIPHFAVSIACKYRGRLEHAVVLDPVRQEEFTASRGRGAQLNGRRLRVSGRTSLDGALLGTGFPFRDDQMDNLENYLGMFRALVGQTAGIRRAGAASLDLAYVAAGRFDAFWESGLSEWDMAAGALLIQEAGGLVSDFTGGHDFLEKGHVVAGNTKCFKAVLTAIQPHLPASLKR
>NZ_CP041236.1|WP_141607236.1|5770082_5770853_-|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLQNIRVVLVNTSHPGNIGGVARAMKNMGLTRLMLVEPRVFPHHEADARASGANDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSGLTNEELQRCHYHVHIPSDPGFSSLNLGAAVQVLSYEVRMAWLVAEGQPSKVEKHEVASTKSGELATMDELERFYEHLEQTLVAIEFLDPEKPRHLMARLRRLYGRSSVSRAEMNILRGILTETQKAARGELLKRKD
>NZ_CP041236.1|WP_065924871.1|5769297_5770080_-|serine-O-acetyltransferase
MFERLREDIQSVFHRDPAARNAFEVLTCYPGMHAIWIHRLSGALWNMGWKWLARLVSNFGRWLTGIEIHPGAKVGRRFFIDHGMGIVIGETAEIGDDVTLYQGVTLGGTSWNKGKRHPTLEDGVVVGAGAKVLGPFTVGAGAKVGSNAVVTKAVPAGATVVGIPGRIIVKPEVGDEQEAKRKAMAEKIGFDAYGVSEDMPDPVARAIGQLLDHLQAVDGKLDGMCGALKELGSSYCAKDLPELREEDFAEIKSEPATKAG
>NZ_CP041236.1|WP_003194020.1|5768503_5768995_-|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRYAVTAMLDLALHAQTGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRGPGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLGDCHAGDTCLTHHLWCDLSLQIHEFLSGISLADLVTRREVQEVAQRQDQRRCNTKAPRLDKIEASAVE
>NZ_CP041236.1|WP_092489666.1|5784404_5784734_+|hypothetical-protein
MELTLEAVALFALKLVHEEDGGSPVLRDDLVMDRYEREVFGLLVRQGDLPGVLLKIDECVVQALVALGGADTVLGRELQRLSTDVQQASTLEELKPLLATLKDYLKAIQ
>NZ_CP041236.1|WP_027607590.1|5784758_5785130_+|PH-domain-containing-protein
MIDFNNKGFFKLKQNNEYAERVAALLLDGEEVIDAYKAMRDGVVFTTKRIIAVNVQGITGSKKDFTSLPYKNIVAYSVETSGTFDLDSELEIYFSSLGKVKFEFTGKTSIVEISRLISKHLLS
>NZ_CP041236.1|WP_065937840.1|5785606_5785864_+|colicin-transporter
MGLKMRLEWFDRTTEWLRGTEDSADLGNDYSVISKLGLSIDEDVNNGMFELRREWLSLIQTHFSHEIALSESDYFIAFDYEGANE
>NZ_CP041236.1|WP_092489667.1|5786092_5786659_-|hypothetical-protein
MKRIALLSLALALCACQSNQRDSSPSLFKDGIQLRQKAVAVDAEHAKVIMKAYGGTAPVEFSIRREGDPDERMETLGTVMDTGEGRVFNWIAKLNQTVASAGFKRFPQLEIQADPGKKLTVASSSTDSRPGIYAICGPLLSSFQPEKGKVYLVEFQFKPSACAQQVFDITDPGKRVLIGGEGSEAKEG
>NZ_CP041236.1|WP_141607237.1|5786733_5788086_-|two-component-sensor-histidine-kinase
MTSVRARILIPVLVLILLGDALISWLVLRDSHHEIEEVYDAQLAQSARLLQGVLRQRDPGEADWDRLYQAFDQAMSRVGEDGVAHPYETRLTFQVWRSDGQLLVRSAEAPVLPAPPATLGSHDIMDNGNDWCAFLLADPQQGLLIWVGERDDIRQDVIQRIMRHTLWPTLIGVPLLTVLIWLVIGWGLKLLRAMARKIRGRTAETLQPLHLKPLPTDLEPMQTALNRLLVQVDDLLERERRFIADAAHELRTPLAILRIHAQNAQSAGTEAQRREALDFLVNGVDRATRIGSQLLTMARIEPQLNNPKRSRVQLTELVREELAELTPLAMEKGVELVLEGDEDCWIETEPVALAIALQNLVTNALNFSPPGSEVKVVIGAHCLSVEDQGPGIDEAEMGRLFERFYSRGNANGAGLGLAIVQMIVGKIGSRLALHNREQGGLCARLVFNET
>NZ_CP041236.1|WP_027607596.1|5788082_5788745_-|response-regulator
MRLLLVEDDRALGQGIRVALGVEGYTLDWLQDGVAALHALRTESFDLLLLDLGLPRLDGLDLLQQLRAEQHDLPVLILTARDGTAERIAGLDAGADDYLVKPFDVEELKARVRALLRRSQGRAQPMLEHAGVSLDPATQQVRYLDADIIVTPMEYQLLHQLMVRPGKVVTRERLSRALYGWQDRVESNTLEVLIHNLRKKLSTELIRTVRGVGYVLALKP
>NZ_CP041236.1|WP_048722823.1|5788892_5789159_+|PepSY-domain-containing-protein
MRKILLLSLIIASPLAVAGPQCTTAERSQWQDEKAFQDKLKAEGYEISKFKVTDGNCYEIYGFDKDKRKVEIYHDPVTGKAVKTEIKG
>NZ_CP041236.1|WP_141607239.1|5789158_5789704_+|cytochrome-B
MPGESLRLWDPLVRLFHLSIAGVFIANYFFNEAGDDWHVWLGYYAMAWLLVRTVWGFIGPRSARWADFWPTPKRLNTHLRSLLNRRPQHRLGHSPLGALVMLSMLLALLVIGISGFLMQEVDALWGADWPLQIHETAANVLLGLVCIHVLAAVFESIQVRDNLPLSMLTGRRKRLPDEPAQ
>NZ_CP041236.1|WP_092489670.1|5789726_5790995_+|exo-alpha-sialidase
MRSALLICSLLGVFVAAWLSHPPHVLAPFAQVAPNTSKVAAAPQYTSRFVSSQLTDFVHASSVTALPGGDLIAVWFAGSREGAADVQVRTARFDARSGEWGAEQVLATRESTRDGTQRYIRKLGNPVIALGPDKRLWMFYVSVSVGGWATSAINLMVSDDLGANWSAPRQLVTSPFFNISTLVRAAPVFHADGSIGLPVYHEFMGKFAEYLYLSADGAVIDKFRISRGKNSLQPTIVPLDGKRAVAMLRYAGDTHHRVLASRTEDAGQTWSEPYPLEPANPNSSLAAVGTEDDGLLVALNDLQDGRFKLSLYGTDAQLSQWRTVVQLDESPDPLGQPFSPEAYKAIIGEGFRASSGAKRLPLEQRFLSNLDYRVCKPQGCDFEYEYPYFSRSPDGMYHVVYSWNNTFIKHVSFNEAWLAERL
>NZ_CP041236.1|WP_141607241.1|5790994_5791594_+|hypothetical-protein
MVSVWQAHLSFVLLGFVLLSALRFTAPWRPWLLPVLVAVSFIPVNELPLAAYVRSFTDDLAISTLVLLAWVVLSRLGLVQPLARRHQVQMLLLFGLLSLVLYPATLGLTYFDPYRWGFNPRPMIVLAAAAALLMLWLRNTLAVWMLAIGTLAFALRLKASENYWDYLVDPLLTGYCLIAGAGLLISTAWRPLLKWHRGQ

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Crispr_ID: NZ_CP041236_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041236_5

6237734-6237844

Orphan

Consensus_repeat	Method
GGGGTGCGCTCTAACCAACTGAGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041236_5

>merge|NZ_CP041236|5|6237734-6237844|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACAGACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCATGGGGTGCGCTCTAACCAACTAAGCTACA

>NZ_CP041236|5|4|6237734-6237844|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACA	GACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCAT
GGGGTGCGCTCTAACCAACTAAGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041236.1\|WP_027605164.1\|6223556_6227630_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP041236.1\|WP_092490077.1\|6233048_6234008_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA	unknown	unknown	gnl\|CDD\|237010
NZ_CP041236.1\|WP_003176443.1\|6244029_6244380_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_CP041236.1\|WP_092489592.1\|6246167_6247130_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|224981
NZ_CP041236.1\|WP_027605161.1\|6231855_6232302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_027605163.1\|6227849_6228215_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP041236.1\|WP_003176436.1\|6230237_6230771_-\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP041236.1\|WP_092490076.1\|6232309_6233059_-\|pantothenate-kinase	unknown	unknown	gnl\|CDD\|237350
NZ_CP041236.1\|WP_065938249.1\|6244545_6245580_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP041236.1\|WP_027605887.1\|6245715_6246144_+\|protoporphyrinogen-oxidase-HemJ	unknown	unknown	gnl\|CDD\|367596
NZ_CP041236.1\|WP_092489591.1\|6247199_6248162_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP041236.1\|WP_141607433.1\|6240016_6241216_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP041236.1\|WP_003176435.1\|6229688_6230120_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP041236.1\|WP_027605162.1\|6230780_6231149_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|235587
NZ_CP041236.1\|WP_141605912.1\|6239522_6239894_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041236.1\|WP_141607435.1\|6241424_6242843_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236946
NZ_CP041236.1\|WP_003176434.1\|6228993_6229689_-\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP041236.1\|WP_141607437.1\|6242846_6243938_+\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
NZ_CP041236.1\|WP_003176433.1\|6228293_6228794_-\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP041236.1\|WP_102061920.1\|6241353_6241428_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041236.1\|WP_027605164.1\|6223556_6227630_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP041236.1\|WP_092490077.1\|6233048_6234008_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	3.82344e-156
NZ_CP041236.1\|WP_092489592.1\|6246167_6247130_+\|nitronate-monooxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	5.13099e-87
NZ_CP041236.1\|WP_027605163.1\|6227849_6228215_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	7.62299e-42
NZ_CP041236.1\|WP_003176436.1\|6230237_6230771_-\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	4.92286e-106
NZ_CP041236.1\|WP_092490076.1\|6232309_6233059_-\|pantothenate-kinase	gnl\|CDD\|237350	PRK13322, PRK13322, pantothenate kinase; Reviewed.	4.52204e-132
NZ_CP041236.1\|WP_065938249.1\|6244545_6245580_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP041236.1\|WP_027605887.1\|6245715_6246144_+\|protoporphyrinogen-oxidase-HemJ	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	8.61702e-66
NZ_CP041236.1\|WP_092489591.1\|6247199_6248162_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	2.74412e-27
NZ_CP041236.1\|WP_141607433.1\|6240016_6241216_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP041236.1\|WP_003176435.1\|6229688_6230120_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	5.27355e-93
NZ_CP041236.1\|WP_027605162.1\|6230780_6231149_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|235587	PRK05740, secE, preprotein translocase subunit SecE; Reviewed.	5.03384e-36
NZ_CP041236.1\|WP_003176443.1\|6244029_6244380_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	2.35112e-79
NZ_CP041236.1\|WP_141607435.1\|6241424_6242843_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	4.41533e-62
NZ_CP041236.1\|WP_003176434.1\|6228993_6229689_-\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	7.99468e-136
NZ_CP041236.1\|WP_003176433.1\|6228293_6228794_-\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	2.87861e-64
NZ_CP041236.1\|WP_141607437.1\|6242846_6243938_+\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	0

>NZ_CP041236.1|WP_092490077.1|6233048_6234008_-|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA
MLTLLELLKDGRFHSGEALGAALGVSRSAVWKQLQHLEAELNLPVHKVRGRGYQLASPLVFLSSEQIAQHASSLAWPIHIYNSIDSTNAEALRLVGVERAAPYLVLAEQQTAGRGRRGRKWVSPFAQNVYYSLLLRIENGPRQLEGLSLVVGLAVMQALRESGVRGAALKWPNDVLVGQKKIAGILLELVGDPADICHVVLGIGINVNMQKAEEVDQQWTSVQLETGSPVDRNSLVARLCLQLQSYLDRHRTQGFSSLRDEWEKGHAWQGKAVSLIAGANRVDGVVLGIDGQGALRLSVGGVEKIYSGGELSLRLRDDS
>NZ_CP041236.1|WP_092490076.1|6232309_6233059_-|pantothenate-kinase
MILELDCGNSFIKWRVLDLDRATASAEGVASSDVALIESLSVLPGVLLTHCRLVSVRALDETKNLVDALVEAFGVAVSCAVSAREMAGVRNGYEDFERLGLDRWLAMLGGFKLASGACLVLDFGTAATADFVAGDGEHLGGFICPGMPLMRNQLRTHTRKIRYDDAAAERALECLSPGHTTVEAVERGCTLMLRGFVLTQLELARSYWGDNFTVFLTGGDADLVRDAVPQARLVPDLIFVGLAMACPLS
>NZ_CP041236.1|WP_027605161.1|6231855_6232302_-|hypothetical-protein
MRWLFLLLLILNAFYYIWHQQEAPLRAKDVTPLSLYRNTQQDIRLLSESSDAVVRKDRAKASDAQNTCLYIGGFADQRQAQFLEQRLTSLDIKVKVQLLSAPDAQGYWLRVAPESRRLADDLPFENLAKEFNELKHKIMLCEGIATLE
>NZ_CP041236.1|WP_027605162.1|6230780_6231149_-|preprotein-translocase-subunit-SecE
MTPKAEAQSSRFDLVKWLAVVALVVVGVVGNQYYSASPILYRVLVLLALAAVAAFVGLQTAKGKSFAVLVKEARTEIRKVVWPTRQETTQTTLIVVAVVLVMALLLWGLDSLLGWLVSLIVG
>NZ_CP041236.1|WP_003176436.1|6230237_6230771_-|transcription-termination/antitermination-protein-NusG
MAKRWYVVHAYSGYEKHVMRSLLERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV
>NZ_CP041236.1|WP_003176435.1|6229688_6230120_-|50S-ribosomal-protein-L11
MAKKITAYIKLQVKAAQANPSPPVGPALGQHGVNIMEFCKAFNARTQGLEPGLPTPVIITVYSDRSFTFETKSTPASVLLKKAAGLTSGSARPNTVKVGTVTRAQLEEIAKTKNADLTAADMDAAVRTIAGSARSMGLNVEGV
>NZ_CP041236.1|WP_003176434.1|6228993_6229689_-|50S-ribosomal-protein-L1
MAKLTKRQKAIAGKIEAGKSYNFVDAAALLTELSTVKFSESVDVAVNLGVDPRKSDQVVRSATVLPHGTGKTVRVAVFTQGPAAEAALAAGADRVGMDDLAAEMKGGDLNYDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVRYRTDKNGIIHTSVGKVGFDAVKLKENVEALIADLKRIKPASSKGIYVKRVTLSTTMGPGLVIDQGSLDV
>NZ_CP041236.1|WP_003176433.1|6228293_6228794_-|50S-ribosomal-protein-L10
MAINLEDKKAIVAEVNEAAKAALSAVVADARGVTVGAMTGLRKEAREAGVYVRVVRNTLLKRAVADTEYSVLNDVFTGPTLIAFSKDHPGAAARLFKEFAKSQDKFEIKAAAFEGKFLAANQIDVLATLPTRNEAISQLMSVIQGATSKLARTLAAVREQKEAAAA
>NZ_CP041236.1|WP_027605163.1|6227849_6228215_-|50S-ribosomal-protein-L7/L12
MSISQDDILNAVAEMSVLQVVELIKAFEEKFGVSAAAASAGPAAAAAVVEEQTEFNVMLTEAGEKKVNVIKAVRELTGLGLKEAKAVVDGAPAMVLEAVAKEAADKAKATLEEAGAKVELK
>NZ_CP041236.1|WP_027605164.1|6223556_6227630_-|DNA-directed-RNA-polymerase-subunit-beta
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDETLKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGRTTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMIEEQRKVADLRKFLHEIYNEIGGRKEELDTFSDQEILDLAKNLRGGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
>NZ_CP041236.1|WP_141605912.1|6239522_6239894_+|hypothetical-protein
MISRGVTCDADNLVDYQSDSTSTHTNCLIQLLKSGWLRAFVSTEARILQQPHLLSSDYFQKLSKISSTTSTTCACDLSSAGGEFYSVTRCCQHLFFSAFDREDRIVNSAKQHDSTNYFWASMN
>NZ_CP041236.1|WP_141607433.1|6240016_6241216_-|tyrosine--tRNA-ligase
MKSVEEQLALIKRGAEELLVEAELIEKLKRGQPLRIKAGFDPTAPDLHLGHTVLINKLRQFQELGHQVIFLIGDFTGMIGDPSGKSATRPPLTREQVLDNAETYKTQVFKILDPAKTEVAFNSTWMDQMGPADFIRLTSQYTVARMLERDDFDKRYSTNQPIAIHEFLYPLVQGYDSVALRADVELGGTDQKFNLLMGRELQRAYGQEAQCILTMPLLEGLDGVKKMSKSLGNYVGIQEAPGVMYGKLVSIPDALMWRYFELLSFRSMDEIDALRADVEAGANPRDVKIKLAEEIVARFHGEEAAASAHRAAGNRMRDGELPDDLPGIELTATEAMPIAAVLNKAGLVKNSAVARDLLGSGGVRIDGEVVDRTFIYELGATHVCQAGKKAFARITLKSE
>NZ_CP041236.1|WP_102061920.1|6241353_6241428_+|hypothetical-protein
MLYSYFIFIMSFIFSISSSKSNYL
>NZ_CP041236.1|WP_141607435.1|6241424_6242843_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MTTEPSKAPPLYPKTHLLAASGIAALLSLALLVFPSSDVEAKRTSLSLDLESPVEQLTQDQDASDAQQATNAPTESPFAQIENTPEDTQQAVQEQKKPVVGAARNPQHREVIVAKGDTLSTLFEKVGLPAATVNDVLASDKQAKQFTQLKHGQKLEFELTPDGQLNNLHTSVSDLESISLTKGAKGFAFNRITTKPVMRSAYVHGVINSSLSQSAARAGLSHSMTMDMASVFGYDIDFAQDIRQGDEFDVIYEQKVANGKVVGTGNILSARFTNRGKTYTAVRYTNKQGNSSYYTADGNSMRKAFIRTPVDFARISSRFSMGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGKILLAGRRGGYGNTVIIQHGNTYRTLYGHMQGFAKGVKTGGNVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKAERARFMQQSQPLMARMDQERSTLLASAKR
>NZ_CP041236.1|WP_141607437.1|6242846_6243938_+|anhydro-N-acetylmuramic-acid-kinase
MPFYIGVMSGTSLDGLDIALIEQGSAVNLIATHYTPMPDTLRAELLSLCASGPDEIARSAIAQQHWVTLAAHGIHTLLDQHNLKPQDIRAIGSHGQTIRHEPARGFTVQIGNPALLAELTGISVVSDFRSRDVAAGGQGAPLVPAFHEALFGESTGNRAVLNIGGFSNLSLIETGKPVAGFDCGPGNVLLDAWIQQQRGEHFDRDGQWAGSGKVEPQLLTALLSDPFFLTKGPKSTGREVFNLGWLHQHLGRLPAFEPQDVQASLLELTVLTIVEALQTAQPETETLLVCGGGAHNTTMMNRLAALLPSTQVSSTATHGVDPDWVEAMAFAWLAHCCLEGIAANRPSVTGARGLRVLGAIYPA
>NZ_CP041236.1|WP_003176443.1|6244029_6244380_-|iron-sulfur-cluster-insertion-protein-ErpA
MSVESFTPTALQFTHGAAHKVKSLVDEEGNDRLKLRVFVTGGGCSGFQYGFTFDEDVADDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNATTTCGCGSSFSI
>NZ_CP041236.1|WP_065938249.1|6244545_6245580_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MVKVGIVGGTGYTGVELLRLLAQHPQAEVVVITSRSEAGLAVADMYPNLRGHYDGLAFSVPDINTLGACDVVFFATPHGVAHALAGELLAAGTKVIDLSADFRLQDADEWAKWYGQPHGAPELLEEAVYGLPEVNREQIKQARLIAVPGCYPTATQLGFLPLLEAGLADASRLIADCKSGVSGAGRGAAVGSLYSETSESMKAYAVKGHRHLPEIRQGLRRAAGQDVGLTFVPHLTPMIRGIHSTLYATVVDRSVDLQALFEKRYANEPFVDVMPAGSHPETRSVRGANVCRIAVHRPQDGDLVVVLSVIDNLVKGASGQAVQNMNILFGLDEKLGLSHAGMLP
>NZ_CP041236.1|WP_027605887.1|6245715_6246144_+|protoporphyrinogen-oxidase-HemJ
MLYLWVKAFHIVSIVCWFAGLFYLPRLFVYHAQSEDTVSKERFSVMERKLYRGIMGPAMLASLVFGIWLIALNPGIFQSGAWIHAKLTLVVFLIGYHHMCGAQVKRFARGENTRSHVFYRWFNEVPVLILLAIVILVVVKPF
>NZ_CP041236.1|WP_092489592.1|6246167_6247130_+|nitronate-monooxygenase
MSLPALLEQRLRLPVVVAPMFLISNPQLVLACCRNGVVGSFPALNQRESSGFKAWLEEIEAGLAQLDNPAPYAVNLIVHNSNPRLQADLAICVEHKVPIVITSLGAVKELVDAVHSYGGLVFHDVTTRRHAEKAAEAGVDGLIAVAAGAGGHAGTWSPFSLIAEIRQFFDKTLLLAGCLNHGHEILAAQLLGADLAYFGTRFIGTTESHAPDAYKEMLLTSRAADIVHTPAVSGVPASFMRQSLENAGFDLAALQGKGEVNFGSKLKPLSDEAKAWKTVWSAGQGVGEINDLPGVDELVARLDAEYRKAREQATQLRWPR
>NZ_CP041236.1|WP_092489591.1|6247199_6248162_+|DUF805-domain-containing-protein
MSDNRFKIVFDGALLPGVESTTAKLNLAELFKSTVEDIEKLFTGRVVALKRDLSRPDAETYLTALKNAGVDARIEAEQPVAFSLAETHETDSGAADLSRPAASPYAPPRAAVGESLPEYATLKVFTINGRIGRLRYLAWTLVLTVAMLVAAGILSTVGFAIATASPTIAIILGSLLGFALFVAVVVVSVQIGVQRLHDLGWSGWLYLLNLVPLVNSIFPLLLLVMPGNTGANQYGAPPPRNSTAVKVLASLWLAFIPLMLIIVVSLGMNGYLDQLETNVDSSYESSSITSDEDADQSVIVDEEDAQSADDAAEPVDSPEQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

317982 : 369147

Pseudomonas_phage(18.18%)

portal,protease,lysis,integrase,terminase,holin

attL 328941:328990|attR 371160:371209

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141605279.1\|317982_320112_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_141605280.1\|320316_320601_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_141607633.1\|320907_322521_-	sporadically distributed protein, TIGR04141 family	NA	NA	NA	NA
WP_092489264.1\|322680_323838_-	ATP-binding protein	NA	NA	NA	NA
WP_141605281.1\|324190_326614_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_141605282.1\|326712_327675_-	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_141605283.1\|327671_328178_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
328941:328990	attL	NA	NA	NA	NA
WP_141605284.1\|329277_330258_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_141605285.1\|330254_330908_+	hypothetical protein	NA	NA	NA	NA
WP_141605286.1\|330888_332037_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	5.1e-75	40.8
WP_141605287.1\|332033_332240_-	hypothetical protein	NA	NA	NA	NA
WP_141605288.1\|332236_333223_-	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	8.0e-77	49.7
WP_141605289.1\|333219_333714_-	hypothetical protein	NA	NA	NA	NA
WP_141605290.1\|333730_333982_-	hypothetical protein	NA	NA	NA	NA
WP_141605291.1\|333978_335970_-	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	6.6e-203	73.0
WP_141605292.1\|335962_336247_-	hypothetical protein	NA	NA	NA	NA
WP_141605293.1\|336243_336786_-	phosphohydrolase	A0A2D1GNL9	Pseudomonas_phage	3.2e-27	42.5
WP_141605294.1\|336782_337004_-	hypothetical protein	NA	NA	NA	NA
WP_141605295.1\|337000_337399_-	hypothetical protein	NA	NA	NA	NA
WP_141605296.1\|337494_337809_-	transcriptional regulator	NA	NA	NA	NA
WP_141605297.1\|337805_338273_-	hypothetical protein	NA	NA	NA	NA
WP_141605298.1\|338253_338436_-	hypothetical protein	NA	NA	NA	NA
WP_141605299.1\|338435_338726_-	hypothetical protein	NA	NA	NA	NA
WP_141605300.1\|338735_339296_-	hypothetical protein	NA	NA	NA	NA
WP_141605301.1\|339539_340328_-	helix-turn-helix domain-containing protein	A0A1B0Z078	Pseudomonas_phage	5.9e-54	46.7
WP_141605302.1\|340436_340724_+	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	2.5e-10	48.6
WP_074844100.1\|341063_341573_+	hypothetical protein	NA	NA	NA	NA
WP_141605303.1\|341565_341784_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_141605304.1\|341780_344003_+	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	4.6e-181	45.5
WP_083381336.1\|344011_344359_+	hypothetical protein	NA	NA	NA	NA
WP_074844108.1\|344885_345185_+	hypothetical protein	NA	NA	NA	NA
WP_141605305.1\|345426_345651_+	hypothetical protein	NA	NA	NA	NA
WP_065927355.1\|345714_346059_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.7e-45	87.6
WP_141605306.1\|346078_346810_+	hypothetical protein	A0A291AUT0	Sinorhizobium_phage	1.9e-27	35.8
WP_141605307.1\|347288_349664_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	1.6e-142	44.2
WP_065899722.1\|349667_349889_+	hypothetical protein	A0A291AUT6	Sinorhizobium_phage	2.7e-09	54.4
WP_141605308.1\|349885_351496_+\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	1.6e-106	43.9
WP_141605309.1\|351498_352863_+	S49 family peptidase	A0A219YA27	Aeromonas_phage	2.4e-47	42.0
WP_141605310.1\|352922_353339_+	cytoplasmic protein	G8DH46	Emiliania_huxleyi_virus	1.1e-24	48.5
WP_141605311.1\|353403_354351_+	hypothetical protein	G8DH47	Emiliania_huxleyi_virus	1.1e-86	52.4
WP_141605312.1\|354386_354635_+	hypothetical protein	NA	NA	NA	NA
WP_141605313.1\|354624_354834_+	hypothetical protein	NA	NA	NA	NA
WP_141605314.1\|354826_355114_+	hypothetical protein	NA	NA	NA	NA
WP_141605315.1\|355119_355572_+	hypothetical protein	NA	NA	NA	NA
WP_141605316.1\|355582_356338_+	hypothetical protein	NA	NA	NA	NA
WP_141605317.1\|356334_356682_+	hypothetical protein	NA	NA	NA	NA
WP_141605318.1\|356747_356939_+	hypothetical protein	NA	NA	NA	NA
WP_141605319.1\|356939_357143_-	hypothetical protein	NA	NA	NA	NA
WP_141605320.1\|357426_360198_+	hypothetical protein	A0A218MKN2	uncultured_virus	4.6e-21	24.7
WP_141605321.1\|360207_360858_+	hypothetical protein	NA	NA	NA	NA
WP_092484726.1\|360854_361715_+	DUF2163 domain-containing protein	A0A0B4SJM9	Proteus_phage	1.5e-15	26.5
WP_141605322.1\|361886_364664_+	hypothetical protein	NA	NA	NA	NA
WP_141605323.1\|364676_366548_+	hypothetical protein	A0A222ZJQ9	Arthrobacter_phage	3.8e-19	29.6
WP_141605324.1\|366547_367387_+	hypothetical protein	D4P7M2	Rhodococcus_phage	1.5e-31	39.4
WP_081610085.1\|367424_367607_-	hypothetical protein	NA	NA	NA	NA
WP_141605325.1\|367820_368330_+	glycoside hydrolase family protein	A0A0F7LBS0	Escherichia_phage	6.4e-54	66.5
WP_141605326.1\|368326_368641_+	ammonia monooxygenase	G8GWD9	Rhodobacter_phage	4.1e-27	57.0
WP_141607634.1\|368637_369147_+\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	2.6e-47	64.3
371160:371209	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1390555 : 1474578

uncultured_Caudovirales_phage(19.51%)

tail,plate,portal,tRNA,lysis,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141605601.1\|1390555_1392778_+	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	3.2e-182	45.8
WP_083381336.1\|1392786_1393134_+	hypothetical protein	NA	NA	NA	NA
WP_092484772.1\|1393650_1393950_+	hypothetical protein	NA	NA	NA	NA
WP_065927355.1\|1394008_1394353_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.7e-45	87.6
WP_141605602.1\|1394372_1395104_+	hypothetical protein	A0A291AUT0	Sinorhizobium_phage	2.5e-27	35.8
WP_065927356.1\|1395313_1395808_+	hypothetical protein	NA	NA	NA	NA
WP_141605603.1\|1395746_1397840_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	5.0e-145	45.0
WP_065899722.1\|1397843_1398065_+	hypothetical protein	A0A291AUT6	Sinorhizobium_phage	2.7e-09	54.4
WP_141605604.1\|1398061_1399672_+\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	2.3e-105	43.6
WP_141605605.1\|1399674_1401039_+	S49 family peptidase	A0A219YA27	Aeromonas_phage	2.4e-47	42.0
WP_141605606.1\|1401081_1401498_+	cytoplasmic protein	G8DH46	Emiliania_huxleyi_virus	7.4e-24	47.8
WP_074844120.1\|1401563_1402511_+	hypothetical protein	G8DH47	Emiliania_huxleyi_virus	2.6e-85	51.4
WP_141605607.1\|1402546_1402795_+	hypothetical protein	NA	NA	NA	NA
WP_141605313.1\|1402784_1402994_+	hypothetical protein	NA	NA	NA	NA
WP_092484750.1\|1402986_1403274_+	hypothetical protein	NA	NA	NA	NA
WP_141605608.1\|1403279_1403729_+	hypothetical protein	NA	NA	NA	NA
WP_141605609.1\|1403742_1404498_+	hypothetical protein	NA	NA	NA	NA
WP_141605610.1\|1404494_1404842_+	hypothetical protein	NA	NA	NA	NA
WP_141605319.1\|1405099_1405303_-	hypothetical protein	NA	NA	NA	NA
WP_141605611.1\|1405588_1408360_+	hypothetical protein	A0A218MKN2	uncultured_virus	2.7e-21	24.7
WP_141605612.1\|1408369_1409020_+	hypothetical protein	NA	NA	NA	NA
WP_141605613.1\|1409016_1409877_+	DUF2163 domain-containing protein	A0A0B4SJM9	Proteus_phage	1.5e-15	26.5
WP_141605614.1\|1410048_1412826_+	hypothetical protein	NA	NA	NA	NA
WP_141605615.1\|1412838_1414710_+	hypothetical protein	A0A222ZJQ9	Arthrobacter_phage	1.9e-18	29.3
WP_141605616.1\|1414709_1415549_+	hypothetical protein	D4P7M2	Rhodococcus_phage	2.5e-31	39.0
WP_081610085.1\|1415586_1415769_-	hypothetical protein	NA	NA	NA	NA
WP_141605617.1\|1415983_1416493_+	glycoside hydrolase family protein	A0A0F7LBS0	Escherichia_phage	1.9e-53	65.8
WP_141605618.1\|1416489_1416804_+	ammonia monooxygenase	G8GWD9	Rhodobacter_phage	2.9e-28	57.9
WP_141607644.1\|1416800_1417307_+\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	9.0e-48	63.7
WP_141605619.1\|1417893_1418913_+	diguanylate cyclase	NA	NA	NA	NA
WP_141605620.1\|1419359_1419719_-	hypothetical protein	NA	NA	NA	NA
WP_141605621.1\|1420141_1420354_-	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	1.7e-21	78.8
WP_141605622.1\|1420944_1421271_-	DUF2388 domain-containing protein	NA	NA	NA	NA
WP_005785382.1\|1421485_1422220_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.7e-119	88.1
WP_139237739.1\|1422315_1422525_+	hypothetical protein	NA	NA	NA	NA
WP_092487457.1\|1422815_1423160_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	2.2e-45	85.0
WP_141605623.1\|1423180_1423696_+	hypothetical protein	NA	NA	NA	NA
WP_092487463.1\|1423699_1424311_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.5e-44	53.3
WP_092487466.1\|1424320_1424653_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	5.1e-36	68.2
WP_092487469.1\|1424649_1425645_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	5.4e-113	63.8
WP_092487472.1\|1425641_1426271_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	3.4e-44	53.4
WP_092487474.1\|1426271_1427726_+	hypothetical protein	E5G6P0	Salmonella_phage	5.4e-29	43.2
WP_092356656.1\|1427948_1428164_+	hypothetical protein	NA	NA	NA	NA
WP_092487477.1\|1428250_1428442_+	hypothetical protein	NA	NA	NA	NA
WP_092487480.1\|1428444_1429611_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	6.1e-124	57.2
WP_092487483.1\|1429610_1430117_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	6.5e-22	34.5
WP_092487486.1\|1430167_1430740_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	3.6e-29	40.3
WP_092487489.1\|1430867_1432331_+	hypothetical protein	NA	NA	NA	NA
WP_065938716.1\|1432330_1432714_+\|tail	phage tail protein	B0ZSH2	Halomonas_phage	1.9e-34	57.5
WP_027604555.1\|1432706_1432919_+\|tail	tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	1.6e-19	65.7
WP_092487492.1\|1432928_1433939_+\|tail	phage tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	3.1e-100	56.5
WP_092487495.1\|1433961_1434519_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	5.7e-72	71.6
WP_092487498.1\|1434506_1435007_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	1.5e-26	73.6
WP_092487501.1\|1435088_1435589_+	CinA family protein	B5TK85	Pseudomonas_phage	9.7e-71	84.3
WP_065926514.1\|1435672_1436731_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4
WP_012722522.1\|1436739_1437207_+	recombination regulator RecX	NA	NA	NA	NA
WP_065926513.1\|1437452_1438565_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_027604548.1\|1438929_1439370_-	hypothetical protein	NA	NA	NA	NA
WP_092487503.1\|1439549_1440269_+	DTW domain-containing protein	NA	NA	NA	NA
WP_092487505.1\|1440521_1441172_+	response regulator transcription factor	NA	NA	NA	NA
WP_065938722.1\|1441247_1441610_+	diacylglycerol kinase	NA	NA	NA	NA
WP_092487508.1\|1441613_1442600_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003172178.1\|1442664_1443444_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_092487511.1\|1443498_1444194_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_141605624.1\|1444197_1444659_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.3e-37	50.7
WP_092356391.1\|1444728_1445439_-	RNA-binding protein	NA	NA	NA	NA
WP_092487514.1\|1445510_1445984_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005785474.1\|1446084_1447425_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_074844204.1\|1447873_1448164_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_137211491.1\|1448331_1448532_+	hypothetical protein	NA	NA	NA	NA
WP_092487517.1\|1448531_1450433_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	1.6e-73	32.8
WP_027604534.1\|1450559_1451666_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_065926501.1\|1451936_1452122_+	hypothetical protein	NA	NA	NA	NA
WP_065926500.1\|1452169_1453795_-	glucan biosynthesis protein D	NA	NA	NA	NA
WP_092487523.1\|1454137_1455562_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_141605625.1\|1455648_1456458_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_027604529.1\|1456447_1457377_-	ABC transporter permease	NA	NA	NA	NA
WP_141605626.1\|1457378_1458413_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.0e-26	32.5
WP_141605627.1\|1458549_1459701_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_141605628.1\|1459772_1461260_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_141605629.1\|1461362_1462274_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_065938734.1\|1462442_1463150_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_092487541.1\|1463310_1464933_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_141605630.1\|1464932_1465445_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_092487547.1\|1465441_1466695_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_092487550.1\|1466691_1467393_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_092487553.1\|1467389_1469672_+	hybrid sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	9.8e-09	27.4
WP_092487556.1\|1469668_1470679_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_065926488.1\|1470730_1471732_+	PleD family two-component system response regulator	A0A127AWB9	Bacillus_phage	8.0e-16	34.7
WP_098465888.1\|1471888_1472983_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	2.0e-07	46.6
WP_027604516.1\|1473075_1474578_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	3.2e-85	39.6

DBSCAN-SWA_3

1550206 : 1555171

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065926446.1\|1550206_1550956_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-65	51.4
WP_003172303.1\|1550955_1551633_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.4e-43	50.0
WP_092487660.1\|1551840_1552677_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
WP_025855149.1\|1552782_1553787_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|1554005_1554215_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_003172320.1\|1554604_1555171_+	dCTP deaminase	S5VM63	Pseudomonas_phage	6.2e-74	73.3

DBSCAN-SWA_4

1720098 : 1727538

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027604309.1\|1720098_1720812_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	8.8e-41	37.6
WP_027604308.1\|1721124_1721496_-	transcriptional regulator	A0A222YXG1	Escherichia_phage	5.9e-41	66.7
WP_065928208.1\|1721499_1721802_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	2.7e-15	42.2
WP_083244960.1\|1721884_1722175_-	hypothetical protein	NA	NA	NA	NA
WP_141605700.1\|1722370_1723996_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.7e-66	41.6
WP_027604305.1\|1724009_1724222_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_027604304.1\|1724289_1724502_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	9.9e-17	59.7
WP_141605701.1\|1724750_1726685_-	response regulator	NA	NA	NA	NA
WP_141605702.1\|1726674_1727538_-	histidine kinase	A0A2K9L0Z8	Tupanvirus	2.5e-26	28.5

DBSCAN-SWA_5

1829117 : 1904646

uncultured_Caudovirales_phage(44.12%)

tail,plate,tRNA,portal,protease,head,lysis,integrase,capsid,terminase,transposase,holin

attL 1831294:1831312|attR 1913448:1913466

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141156846.1\|1829117_1830266_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_141605733.1\|1830370_1831390_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
1831294:1831312	attL	NA	NA	NA	NA
WP_102619008.1\|1831492_1832590_+\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	2.4e-154	73.2
WP_102619009.1\|1832610_1833228_+	hypothetical protein	NA	NA	NA	NA
WP_102618984.1\|1833267_1833537_-	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	1.9e-20	59.1
WP_141605734.1\|1833533_1834085_-	hypothetical protein	NA	NA	NA	NA
WP_141605735.1\|1834452_1834995_-	phosphohydrolase	U5P0T3	Shigella_phage	1.9e-27	45.1
WP_141605736.1\|1834991_1835210_-	hypothetical protein	NA	NA	NA	NA
WP_141605737.1\|1835206_1835608_-	hypothetical protein	NA	NA	NA	NA
WP_141605738.1\|1835657_1835984_-	transcriptional regulator	NA	NA	NA	NA
WP_141605739.1\|1835934_1836114_-	hypothetical protein	NA	NA	NA	NA
WP_141605740.1\|1836139_1836424_-	DNA-binding protein	NA	NA	NA	NA
WP_141605741.1\|1836433_1837015_-	hypothetical protein	NA	NA	NA	NA
WP_141605742.1\|1837348_1838722_+	AAA family ATPase	NA	NA	NA	NA
WP_141605743.1\|1838722_1839661_+	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_141605744.1\|1839687_1840335_-	XRE family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	2.4e-13	43.8
WP_141605745.1\|1840433_1840661_+	hypothetical protein	NA	NA	NA	NA
WP_141607646.1\|1840896_1841511_+	hypothetical protein	NA	NA	NA	NA
WP_122539654.1\|1841503_1841731_+	TraR/DksA family transcriptional regulator	A0A1Z1LZ52	Serratia_phage	2.6e-07	50.9
WP_141605746.1\|1841720_1843940_+	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	6.2e-194	47.9
WP_141605747.1\|1843932_1844298_+	hypothetical protein	NA	NA	NA	NA
WP_043046669.1\|1844825_1845170_+\|holin	pyocin R2, holin	A0A2H4J893	uncultured_Caudovirales_phage	2.2e-45	79.6
WP_141605748.1\|1845375_1845978_+\|terminase	terminase small subunit	A0A2H4JG15	uncultured_Caudovirales_phage	1.9e-52	59.7
WP_141605749.1\|1845981_1848012_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	79.8
WP_032889620.1\|1848013_1848220_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	9.0e-23	75.0
WP_141605750.1\|1848219_1849701_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.5e-247	86.6
WP_141605751.1\|1849697_1850828_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	3.4e-140	69.0
WP_141605752.1\|1850824_1851163_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.5e-43	81.7
WP_141605753.1\|1851225_1852221_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.4e-169	88.8
WP_141605754.1\|1852223_1852544_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	1.5e-40	73.3
WP_141605755.1\|1852540_1853197_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	6.1e-73	63.3
WP_141605756.1\|1853189_1853708_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-56	62.8
WP_141605757.1\|1853704_1854310_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	9.4e-52	78.2
WP_141607647.1\|1854364_1854586_+	hypothetical protein	NA	NA	NA	NA
WP_141605758.1\|1854591_1854918_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	5.8e-32	62.3
WP_141605759.1\|1854914_1855817_+\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	4.4e-106	67.5
WP_141605760.1\|1855791_1856397_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.6e-72	74.9
WP_141605761.1\|1856393_1858247_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	4.7e-78	49.1
WP_141605762.1\|1858248_1858656_+	hypothetical protein	A0A2H4J880	uncultured_Caudovirales_phage	5.8e-13	54.5
WP_141605763.1\|1858705_1859332_+	hypothetical protein	NA	NA	NA	NA
WP_141605764.1\|1859432_1860599_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.1e-173	79.5
WP_141605765.1\|1860611_1861115_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.2e-65	70.7
WP_141605766.1\|1861126_1861438_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	5.7e-21	55.8
WP_141605767.1\|1861586_1864076_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.3e-83	35.5
WP_141605768.1\|1864085_1864931_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	7.5e-116	73.9
WP_017848158.1\|1864905_1865112_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.7e-21	73.1
WP_141605769.1\|1865206_1866256_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.1e-148	73.9
WP_141605770.1\|1866310_1866874_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	2.5e-83	80.2
WP_141605771.1\|1866855_1867398_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	2.4e-46	57.4
WP_141605772.1\|1867546_1868341_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.9e-100	66.2
WP_141605773.1\|1868346_1869048_-	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	4.5e-58	50.4
WP_141605774.1\|1869148_1869574_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.9e-15	39.5
WP_141605775.1\|1869566_1870844_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.4e-110	51.0
WP_141605776.1\|1870877_1871492_-	hypothetical protein	NA	NA	NA	NA
WP_141605777.1\|1871809_1872367_-	hypothetical protein	NA	NA	NA	NA
WP_141605778.1\|1872730_1872943_-	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	1.9e-20	76.8
WP_141607648.1\|1873263_1874415_+\|integrase	tyrosine-type recombinase/integrase	L7TP61	Pseudomonas_virus	2.0e-135	63.0
WP_122680173.1\|1874389_1874665_-	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	2.4e-23	60.5
WP_094064610.1\|1874675_1874927_-	hypothetical protein	NA	NA	NA	NA
WP_141605779.1\|1874930_1875191_-	hypothetical protein	NA	NA	NA	NA
WP_094064608.1\|1875249_1875561_-	hypothetical protein	NA	NA	NA	NA
WP_141605780.1\|1875610_1878424_-	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	62.1
WP_141605781.1\|1878420_1878666_-	hypothetical protein	Q9ZXI9	Pseudomonas_virus	3.9e-17	55.1
WP_141605782.1\|1878737_1879112_-	hypothetical protein	NA	NA	NA	NA
WP_141605783.1\|1879108_1879402_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.2e-15	47.9
WP_141605784.1\|1879401_1879872_-	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	1.4e-39	53.6
WP_141607649.1\|1879912_1880161_-	hypothetical protein	NA	NA	NA	NA
WP_141607650.1\|1880298_1880679_+	bacteriophage CI repressor	NA	NA	NA	NA
WP_141605785.1\|1880947_1882108_+	nucleoid-associated protein	NA	NA	NA	NA
WP_141605786.1\|1882233_1883316_+	hypothetical protein	NA	NA	NA	NA
WP_141605787.1\|1883312_1884581_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	9.7e-192	80.3
WP_141605788.1\|1884577_1885018_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	2.4e-57	72.6
WP_141605789.1\|1885023_1887699_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	2.4e-163	40.1
WP_083207100.1\|1887688_1887808_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	3.8e-10	76.9
WP_141605790.1\|1887816_1888152_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	1.5e-22	57.9
WP_141605791.1\|1888202_1888718_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	3.4e-71	76.0
WP_141605792.1\|1888775_1889951_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	1.3e-171	75.4
WP_141605793.1\|1890042_1890438_-	hypothetical protein	A0A067ZI91	Vibrio_phage	1.5e-05	36.5
WP_141605794.1\|1890439_1892296_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	2.2e-99	42.1
WP_141605795.1\|1892292_1892910_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	4.5e-78	71.7
WP_141605796.1\|1892909_1893821_-\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	1.3e-113	70.4
WP_141605797.1\|1893817_1894162_-\|plate	baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	1.1e-36	67.3
WP_141605798.1\|1894158_1894731_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	6.1e-61	63.7
WP_141605799.1\|1894812_1895367_-	hypothetical protein	NA	NA	NA	NA
WP_141605800.1\|1895418_1895877_-	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	1.6e-48	63.3
WP_141605801.1\|1895866_1896349_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	1.6e-46	68.4
WP_141605802.1\|1896445_1896889_-\|lysis	LysB family phage lysis regulatory protein	Q9ZXL5	Pseudomonas_virus	3.2e-09	33.6
WP_141605803.1\|1896885_1897089_-	hypothetical protein	NA	NA	NA	NA
WP_141605804.1\|1897085_1897928_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	1.8e-101	70.1
WP_141605805.1\|1897924_1898239_-\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	2.4e-27	57.7
WP_141605806.1\|1898293_1898506_-\|tail	phage tail protein	Q9ZXL9	Pseudomonas_virus	7.6e-25	80.3
WP_141605807.1\|1898505_1898967_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	3.3e-49	62.1
WP_141605808.1\|1899084_1899786_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	6.7e-86	71.3
WP_141605809.1\|1899790_1900813_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	3.2e-121	61.8
WP_141605810.1\|1900853_1901684_-\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	2.9e-72	53.1
WP_046035102.1\|1901839_1903597_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	3.2e-286	80.7
WP_141605811.1\|1903596_1904646_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	7.6e-142	76.0
1913448:1913466	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3144272 : 3184980

Pseudomonas_phage(42.11%)

tail,plate,portal,head,lysis,integrase,capsid,terminase,holin

attL 3145832:3145876|attR 3185249:3185293

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027607903.1\|3144272_3145859_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	8.4e-60	29.0
3145832:3145876	attL	NA	NA	NA	NA
WP_141606272.1\|3145879_3147073_-\|integrase	tyrosine-type recombinase/integrase	J7HXC4	Pseudomonas_phage	2.9e-121	57.7
WP_141606273.1\|3147285_3147537_-	hypothetical protein	NA	NA	NA	NA
WP_141606274.1\|3147533_3148040_-	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	4.3e-58	61.9
WP_141606275.1\|3148036_3150028_-	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	3.3e-202	69.1
WP_141606276.1\|3150020_3150611_-	phosphohydrolase	A0A2D1GNL9	Pseudomonas_phage	1.3e-26	41.3
WP_141606277.1\|3150607_3150829_-	hypothetical protein	NA	NA	NA	NA
WP_141606278.1\|3150825_3151224_-	hypothetical protein	NA	NA	NA	NA
WP_141606279.1\|3151323_3151566_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	9.6e-24	70.0
WP_141606280.1\|3151562_3151937_-	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	1.4e-42	73.4
WP_141606281.1\|3151933_3152209_-	hypothetical protein	A0A2H4JBX5	uncultured_Caudovirales_phage	2.3e-26	66.3
WP_141606282.1\|3152220_3152802_-	deoxynucleotide monophosphate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	9.8e-83	79.5
WP_141606283.1\|3152798_3153002_-	hypothetical protein	NA	NA	NA	NA
WP_141607670.1\|3153140_3153992_-	helix-turn-helix domain-containing protein	A0A0A0YR73	Pseudomonas_phage	2.2e-59	47.8
WP_141606284.1\|3154139_3154349_+	hypothetical protein	NA	NA	NA	NA
WP_141606285.1\|3154487_3154976_+	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	1.4e-45	70.3
WP_141606286.1\|3154968_3155172_+	transcriptional regulator	A0A2H4JDJ0	uncultured_Caudovirales_phage	1.0e-18	69.1
WP_141606287.1\|3155168_3157892_+	DNA primase	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	61.6
WP_141606288.1\|3158199_3158478_+	hypothetical protein	NA	NA	NA	NA
WP_141606289.1\|3159230_3159719_+	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	1.1e-26	45.5
WP_141606290.1\|3159998_3160343_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	2.0e-46	84.3
WP_141607671.1\|3160407_3160692_+	HNH endonuclease	K7P7P4	Enterobacteria_phage	1.6e-22	50.5
WP_141606291.1\|3160847_3161381_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_141606292.1\|3161343_3163161_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	6.4e-112	39.3
WP_141606293.1\|3163157_3163337_+	hypothetical protein	NA	NA	NA	NA
WP_141606294.1\|3163339_3164611_+\|portal	phage portal protein	Q8W6U7	Burkholderia_virus	1.4e-142	59.6
WP_141606295.1\|3164607_3165552_+	S49 family peptidase	A4JX00	Burkholderia_virus	4.1e-94	56.4
WP_141606296.1\|3165614_3166934_+\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	6.7e-127	55.5
WP_141606297.1\|3166983_3167340_+	hypothetical protein	NA	NA	NA	NA
WP_141606298.1\|3167343_3167895_+	hypothetical protein	NA	NA	NA	NA
WP_141606299.1\|3167897_3168260_+\|head	phage head closure protein	Q8HAC9	Salmonella_phage	1.9e-20	43.4
WP_126588610.1\|3168252_3168774_+	hypothetical protein	NA	NA	NA	NA
WP_141606300.1\|3168817_3169411_+	hypothetical protein	B5TK65	Pseudomonas_phage	4.3e-49	52.9
WP_141606301.1\|3169422_3169641_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	5.4e-10	61.5
WP_141606302.1\|3169640_3171137_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	3.0e-176	64.6
WP_141606303.1\|3171191_3171539_+\|tail	phage tail protein	NA	NA	NA	NA
WP_141606304.1\|3171535_3171832_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	7.1e-29	71.0
WP_141606305.1\|3171777_3171963_+	hypothetical protein	NA	NA	NA	NA
WP_141606306.1\|3171962_3173882_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	1.6e-108	48.1
WP_141606307.1\|3173878_3175138_+	hypothetical protein	B5TK71	Pseudomonas_phage	2.1e-69	38.7
WP_141606308.1\|3175140_3176253_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	9.6e-103	55.8
WP_141606309.1\|3176249_3176759_+\|plate	phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	2.5e-58	66.7
WP_141606310.1\|3176758_3177148_+	hypothetical protein	B5TK74	Pseudomonas_phage	3.0e-27	48.4
WP_141606311.1\|3177137_3178181_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	8.5e-69	42.2
WP_141606312.1\|3178171_3178813_+	DUF2313 domain-containing protein	A0A2H4J9D6	uncultured_Caudovirales_phage	8.8e-24	34.5
WP_141606313.1\|3179787_3181386_+	hypothetical protein	A0A2H4J9C6	uncultured_Caudovirales_phage	7.8e-21	44.9
WP_141606314.1\|3181389_3182235_+	hypothetical protein	NA	NA	NA	NA
WP_141606315.1\|3182302_3182836_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	1.2e-74	79.1
WP_141606316.1\|3182832_3183144_+	ammonia monooxygenase	G8GWD9	Rhodobacter_phage	1.3e-28	56.9
WP_141606317.1\|3183146_3183659_+\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	3.7e-49	66.1
WP_141606318.1\|3183808_3184603_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	2.5e-97	64.7
WP_141606319.1\|3184620_3184980_-	hypothetical protein	A0A2D1GNN8	Pseudomonas_phage	7.5e-33	64.4
3185249:3185293	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4191127 : 4201033

uncultured_Caudovirales_phage(71.43%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141606713.1\|4191127_4191952_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.8e-105	72.0
WP_092488788.1\|4192216_4192819_+	YIP1 family protein	NA	NA	NA	NA
WP_092488872.1\|4192948_4193443_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_092488789.1\|4193538_4194714_-	CoA transferase	NA	NA	NA	NA
WP_092488790.1\|4194871_4195264_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.3e-53	78.5
WP_027606352.1\|4195265_4195616_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.0e-38	66.9
WP_141606714.1\|4195615_4195894_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.3e-24	55.6
WP_092488793.1\|4195890_4196226_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.3e-44	76.6
WP_141606715.1\|4196222_4197224_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.5e-167	85.7
WP_141606716.1\|4197312_4198308_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_092488796.1\|4198357_4199752_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_141606717.1\|4199752_4201033_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	53.8

DBSCAN-SWA_8

6344609 : 6404296

Tupanvirus(16.67%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027605972.1\|6344609_6345110_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_141607480.1\|6345283_6346171_+	acyltransferase	NA	NA	NA	NA
WP_141607481.1\|6346167_6346740_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_141607482.1\|6347232_6348207_+	hypothetical protein	NA	NA	NA	NA
WP_098480810.1\|6348207_6348561_+	hypothetical protein	NA	NA	NA	NA
WP_005792122.1\|6348607_6349807_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.4e-11	29.3
WP_065925438.1\|6349927_6350785_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_141607483.1\|6350795_6351428_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_141607484.1\|6351551_6354569_-	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA
WP_003194855.1\|6354565_6354868_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_141607485.1\|6354883_6356134_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_065947481.1\|6356156_6357410_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	8.6e-100	52.5
WP_141607486.1\|6357585_6358314_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_141607487.1\|6358404_6359445_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_065925442.1\|6359531_6360632_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_141607488.1\|6360913_6362209_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_027605985.1\|6363094_6363589_+	type II secretion system protein	NA	NA	NA	NA
WP_053130968.1\|6363563_6363944_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_092490321.1\|6363969_6364437_+	type II secretion system protein	NA	NA	NA	NA
WP_141607489.1\|6364509_6366012_+	chitin-binding protein	V9XTU4	Choristoneura_murinana_nucleopolyhedrovirus	1.4e-24	34.0
WP_074847788.1\|6366224_6366656_+	type II secretion system protein GspG	NA	NA	NA	NA
WP_141607490.1\|6366657_6367122_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_141607491.1\|6367118_6368303_+	type II secretion system F family protein	NA	NA	NA	NA
WP_141607492.1\|6368307_6369945_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_141607493.1\|6369925_6370651_+	hypothetical protein	NA	NA	NA	NA
WP_141607708.1\|6370659_6371205_+	hypothetical protein	NA	NA	NA	NA
WP_141607494.1\|6371211_6371748_+	hypothetical protein	NA	NA	NA	NA
WP_092490310.1\|6371744_6372236_+	hypothetical protein	NA	NA	NA	NA
WP_092490309.1\|6372254_6374180_+	general secretion pathway protein GspD	NA	NA	NA	NA
WP_027605998.1\|6374299_6375070_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_141607495.1\|6375080_6376301_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_092490306.1\|6376300_6378244_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_065925458.1\|6378400_6380461_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_027606002.1\|6380476_6381007_-	hypothetical protein	NA	NA	NA	NA
WP_010207105.1\|6381059_6382037_-	membrane dipeptidase	NA	NA	NA	NA
WP_027606004.1\|6382258_6382660_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_141607496.1\|6382701_6383118_+	DUF3010 family protein	NA	NA	NA	NA
WP_141607497.1\|6383124_6383553_-	hypothetical protein	NA	NA	NA	NA
WP_115485624.1\|6383783_6384959_-	hypothetical protein	NA	NA	NA	NA
WP_092355615.1\|6385027_6386005_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_065947495.1\|6386165_6387110_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_027606009.1\|6387184_6388072_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_092490302.1\|6388141_6389107_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_027606011.1\|6389120_6389597_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_092490300.1\|6389606_6390767_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_027606014.1\|6391013_6391277_+	hypothetical protein	NA	NA	NA	NA
WP_065925468.1\|6391381_6392485_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_065938175.1\|6392941_6394318_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_027606017.1\|6394733_6395681_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065925470.1\|6395750_6396596_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_141607498.1\|6396592_6397771_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.9e-26	37.6
WP_027606019.1\|6397945_6399937_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.7
WP_053128113.1\|6400270_6400864_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_141607499.1\|6400974_6402447_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_092490297.1\|6402592_6404296_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.2e-51	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041236

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection