CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041131	Serratia marcescens strain WVU-008 chromosome, complete genome	2 crisprs	DEDDh,RT,DinG,csa3,cas3,WYL	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041131_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041131_1

1858350-1858429

Orphan

Consensus_repeat	Method
CCGGCGGCTTCGCCTGCACCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041131_1

>merge|NZ_CP041131|1|1858350-1858429|CRISPRCasFinder
CCGGCGGCTTCGCCTGCACCGGCGGCTTCGCCTGCACCGGCGGCTTCGCCTGCACCGGCGGCTTCGCCTGCACCGGCGGT

>NZ_CP041131|1|1|1858350-1858429|CRISPRCasFinder
CCGGCGGCTTCGCCTGCACCGGCGG	CTTCGCCTGCACCGGCGGCTTCGCCTGCA
CCGGCGGCTTCGCCTGCACCGGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041131.1\|WP_142109624.1\|1853235_1855002_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP041131.1\|WP_142109625.1\|1855241_1856213_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP041131.1\|WP_142109622.1\|1850738_1851464_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP041131.1\|WP_004928343.1\|1847929_1850209_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP041131.1\|WP_015377324.1\|1866533_1867274_-\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NZ_CP041131.1\|WP_019454555.1\|1861385_1861997_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP041131.1\|WP_019454548.1\|1869892_1870753_-\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|182746
NZ_CP041131.1\|WP_038880767.1\|1863460_1864753_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP041131.1\|WP_072265439.1\|1862004_1863351_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP041131.1\|WP_142109623.1\|1851493_1853233_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP041131.1\|WP_087762271.1\|1871207_1872971_-\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	unknown	unknown	gnl\|CDD\|132588
NZ_CP041131.1\|WP_004928347.1\|1847581_1847902_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP041131.1\|WP_016928324.1\|1867555_1869838_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NZ_CP041131.1\|WP_004928349.1\|1847003_1847225_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP041131.1\|WP_142109627.1\|1874467_1875553_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_CP041131.1\|WP_002211347.1\|1850414_1850633_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP041131.1\|WP_142109621.1\|1844970_1846917_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP041131.1\|WP_060421731.1\|1864804_1865170_-\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|378058
NZ_CP041131.1\|WP_033637849.1\|1865333_1866485_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NZ_CP041131.1\|WP_004928318.1\|1856867_1857362_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009

Protein	Function_ID	Function_description	E-value
NZ_CP041131.1\|WP_142109624.1\|1853235_1855002_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041131.1\|WP_142109625.1\|1855241_1856213_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP041131.1\|WP_142109622.1\|1850738_1851464_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	9.65318e-141
NZ_CP041131.1\|WP_004928343.1\|1847929_1850209_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP041131.1\|WP_015377324.1\|1866533_1867274_-\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NZ_CP041131.1\|WP_019454555.1\|1861385_1861997_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	4.66812e-101
NZ_CP041131.1\|WP_019454548.1\|1869892_1870753_-\|formate-transporter-FocA	gnl\|CDD\|182746	PRK10805, PRK10805, formate transporter; Provisional.	0
NZ_CP041131.1\|WP_038880767.1\|1863460_1864753_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP041131.1\|WP_072265439.1\|1862004_1863351_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP041131.1\|WP_142109623.1\|1851493_1853233_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041131.1\|WP_087762271.1\|1871207_1872971_-\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0
NZ_CP041131.1\|WP_004928347.1\|1847581_1847902_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.2253e-50
NZ_CP041131.1\|WP_016928324.1\|1867555_1869838_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP041131.1\|WP_004928349.1\|1847003_1847225_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.18407e-44
NZ_CP041131.1\|WP_142109627.1\|1874467_1875553_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_CP041131.1\|WP_002211347.1\|1850414_1850633_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP041131.1\|WP_142109621.1\|1844970_1846917_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP041131.1\|WP_060421731.1\|1864804_1865170_-\|DUF1801-domain-containing-protein	gnl\|CDD\|378058	pfam08818, DUF1801, Domain of unknown function (DU1801). This large family of bacterial proteins is uncharacterized. They contain a presumed domain about 110 amino acids in length.	5.56044e-12
NZ_CP041131.1\|WP_033637849.1\|1865333_1866485_+\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NZ_CP041131.1\|WP_004928318.1\|1856867_1857362_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.02041e-117

>NZ_CP041131.1|WP_004928318.1|1856867_1857362_+|leucine-responsive-transcriptional-regulator-Lrp
MADNKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIHGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP041131.1|WP_142109625.1|1855241_1856213_-|thioredoxin-disulfide-reductase
MGTAKHSKLLILGSGPAGYTAAVYAARANLSPVLITGMEQGGQLTTTTEVENWPGDAEGLTGPALMERMREHAEKFQTEIVFDHINSVDLQQRPFRLFGDSGEYSCDALIIATGASARYLGLPSEDAFKGKGVSACATCDGFFYRNQKVAVVGGGNTAVEEALYLSNIAAEVHLIHRRDSFRSEKILIDRLMDKVKSGNIVLHTDHTLDEVLGDEMGVTGVRIRSTKAENETRELELAGVFIAIGHSPNTGIFGGQLELENGYIKVQSGIHGNATQTTIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGIAGAEVC
>NZ_CP041131.1|WP_142109624.1|1853235_1855002_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MKKTRQQQLTRWLKTQSSLAQRWLRLSMLLGLFSGLLIVAQAWLLASLLHALIIEHTPREQLIPSFIWLAAAFALRALLSWLRERIGFLCGQVIRQRMRQQVLDKLQQLGPAWIQGKPAGSWASIIVEQIEDMQDYYSRYLPQMYLAVFIPLLILIAVFPINWAAGIILLATAPLIPLFMALVGMGAADANRRNFVALARLSGNFLDRLRGLDTLRLFDRAQAETAQIAKSSEDFRSRTMEVLRLAFLSSGVLEFFASISIAVVAVYFGFSYLGELNFGSYGLGVTLFSGFLVLILAPEFFQPLRDLGTFYHAKAQAIGAAEALETFLSAEGEQMGNGTQQLPADQPLTLQANALEILSPNGVLLAGPLSFTLQPQQRVALVGLSGAGKSSLLNLLLGFLPYRGSLTVNGIELRELSAETWRQQLSWVGQNPHLPAQTLRANILLGCPQADEAQLQQAVEHAYVSELLPYLPQGLDTEVGDNAARLSVGQAQRVAVARALIGPRSLLLLDEPAASLDAHSEQRVMQALNAASHQQTTLLVTHQLEDTEDYDQIWVMDNGRIVQQGDYATLSAQPGLFATLIAHRRGEL
>NZ_CP041131.1|WP_142109623.1|1851493_1853233_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRVLLPFLALYRRHSLLISLGILLAIVTLLASIGLLALSGWFLAASSLAGLAGLLTFNYMLPAAGVRGAAIFRTAGRYAERVVSHDATFRVLSHLRVFTFSKILPLTPGGIARFRQAELLNRLVADVDTLDHLYLRVISPLISAAVVILVVTYGLSWLDPALALTLGGILLLLLLLVPPVFYRAGKPIGGQLTALRGQYRTDLTAWLQGQAELVVFGAVNDFRQTLNATEQRWQRRQWQQASLSGKAQALMILASGLTVTLLLWLTAAGIGGDTQPGALIALFVFAALASFEALMPVAGAFQHLGQVIASATRVKQIIDRQPEVTFPAAGPAAADRAQLSLRQLSFTYPDQPQPVLRDVTLEVAAGEHIALLGRTGCGKSTLLQLLTRAWRTDGGNILLNGEPLEDYDETTLRRMTTVVSQRVHIFSDTLRENLRLAAPDADDASLSEVLQQVGLGKLLDSDGGLNAWLGEGGRQLSGGEQRRLGIARALLHPAPLLLLDEPTEGLDAETEQQILALLRRHCQGKTLILVTHRLYGLEHLDRICVMDDGRIVEQGDHATLMRRQGRYARFRNRISNLAP
>NZ_CP041131.1|WP_142109622.1|1850738_1851464_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRIVKLSPQSLAFPSPEGALRDPNGLLAIGGDLTAPRLLAAYERGIFPWYSPGEAILWWSPDPRAVLFPTEFHLNRSLKRFLRHNPFRITLNHDFAAVIAACAHRPDEGTWIGPEVQRAYQHLHRLGYAHSVEVWQDDQLVGGMYGVAQGALFCGESMFSRVTNASKCALMAFCRHFAAYGGELIDCQVLNAHTARLGAREIPRRQFLQQLSTLQRRPLAPACWEPQVISPQPAEPPSPVN
>NZ_CP041131.1|WP_002211347.1|1850414_1850633_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP041131.1|WP_004928343.1|1847929_1850209_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPAAREALEACTVDLAALRQELEAFIEQTTPTLPAGEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVSGANVLVAIFSEQESQAAYLLRKHDVSRLDVVNFISHGTRKDEPGQAPNAENPVNEEQSGGEDRMENFTTNLNQLARVGGIDPLIGRDRELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTLYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDQNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPTAEETVQIINGLKAKYEAHHDVRYTAKAIRAAVELSVKYINDRHLPDKAIDVIDEAGARSRLMPASKRKKTVNVADIESVVARIARIPEKTVSASDRDVLRNLGDRLKMLVFGQDQAIEALTEAIKMSRAGLGHERKPVGSFLFAGPTGVGKTEVTVQLAKAMDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPHAVVLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVRETERKSIGLVQQDNSTDAMEEIKKVFTPEFRNRLDNIIWFNHLSTEVIQQVVDKFIVELQAQLDAKGVSLEVSDEARDWLSVKGYDRAMGARPMARVMQENLKKPLANELLFGSLVDGGSVKVELDKDKKQLTYHFLSAAKRKADEGAVH
>NZ_CP041131.1|WP_004928347.1|1847581_1847902_+|ATP-dependent-Clp-protease-adapter-ClpS
MGNNNDWLNFEHLAEEKQIDAVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVFTAEVAETKVVHVNRYARENEHPLLCTLEKA
>NZ_CP041131.1|WP_004928349.1|1847003_1847225_-|cold-shock-like-protein-CspD
METGTVKWFNNAKGFGFICPAGGGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPKGNHASLIVPVESEALS
>NZ_CP041131.1|WP_142109621.1|1844970_1846917_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MAALLQLSGIRRSYRSGEQTVEVLKGISLSIDAGEMVAIMGASGSGKSTLMNILGCLDKPSAGVYRVAGQDVATLSDDALAQLRREHFGFIFQRYHLLPHLSAAHNVEVPAVYAGLGKAARRERAVALLRRLGLGERVNYRPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILKQLCAQGHTVILVTHDPAVARQAERIIEIRDGEIIADLRPAPQENAQAKPLALAAAAASWRQVGGRFREALVMAWRAMAANKMRTALTMLGIIIGIASVVSILVIGDAAKQMVLADIKSIGTNTVDIYPGKDFGDDDPTYRQSLKYGDLDALREQPYISALSPSISSSMRLRLGNVDAAANVNGVSEQFFRVYGMSFTQGVGIDPLQVQSQAQTVVIDANTQRRLFPHQKNVVGEVILVGNMPATVVGVAKEKQSMFGSSKTLNVWVPYSTMANRLMGNNYFDSITVRIRDGYDSKEAEQQLSRLLTLRHGKKDFFTYNMDSLVQTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARSGDVLQQFLIEAVLVCLVGGALGITLSFAIGLAVQLVLPGWQISFPPAALLSAFLCSTGIGVVFGYLPARNAARLNPIDALARE
>NZ_CP041131.1|WP_019454555.1|1861385_1861997_+|outer-membrane-lipoprotein-chaperone-LolA
MKKLLVACCLLSGFASTSVLADAAQDLQSRLAKVNSFHASFSQTVTSADGAAVQQGEGELWVKRPNLFNWHMTSPDESVLVSDGQTLWFYNPFVEQVTATWLKNATGNTPFMLITRNNASDWKQYNVKQKGDDFELTPKSASGNLKQFAISVTNSGTIRSFAAVEQDGQRSSYTLKSQQNVAADPAKFKFTPPKGVTLDDQRQ
>NZ_CP041131.1|WP_072265439.1|1862004_1863351_+|replication-associated-recombination-protein-A
MSNNLSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIGQVLDQAMGDKARGFGNQNVELPAETRRLLSELVGGDARRALNSLEMMADMAELDAKGVRVLTPELLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDAKEQADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGENYFPPEMAHTRYYQPTSRGLEGKIGEKLAWLAEQDQNSPTKRYR
>NZ_CP041131.1|WP_038880767.1|1863460_1864753_+|serine--tRNA-ligase
MLDPNLLRNELDAVAVKLARRGFKLDLDLLRSQEERRKVLQVETETLQAERNSRSKSIGAAKARGEDIEPLRREVNELGDKLDAAKAALDALQSEIRDYALTLPNLPDDAVPDGKDDSENLEVTRWGEPRQYDFAVRDHVDLGEMAGGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYLEAYVPYLVNHATLYGTGQLPKFGEDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIVEEESLPLKMTAHTPCFRAEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMDALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGACKTYDLEVWLPAQDTYREISSCSNMWDFQARRMQARCRSKADKKPRLVHTLNGSGLAVGRTLVAVLENYQQADGRIQVPEVLRPYMGGLEYIG
>NZ_CP041131.1|WP_060421731.1|1864804_1865170_-|DUF1801-domain-containing-protein
MSQANDAAVEALLADIGSTQGDLLAIVQQVRRIAAASGNGVTESVKYGGIMFSHSQFFCGVFAYRHHVTVEFGHGYRLEDRYLQLEGNGQYRRHIKLHSPDEVKSKHLADYIQQAYTLATG
>NZ_CP041131.1|WP_033637849.1|1865333_1866485_+|MFS-transporter
MSAYSRPVLLLLCGLLLLTVSIAVLNTLVPLWLTHAQLSTWQVGMVSSSYFSGNLLGTLVAGKLIQRVGFTRSYHLSCLVFAAATAGMVLSIDFWSWLGWRFFAGVGCAWIWVIVESALLRSGNLSNRGQLLAAYMIVYYLGTVTGQLLLSMTSTELLHVVPWVTAIVISAMLPMLFARVNRHEDEPQQAAVWTMLRRRSARLGINGCIISGIVLGSLYGLMPLYLSHQGMSDANVGYWMALLVSSGIVGQWPVGRLADRYGRLLVLRIQVFVVILASVAMLGNYAMAPSLFILGCAGFTLYPVAMSWACEKALPHELVAMNQALLMSYTIGSLLGPSMTALLMQNYSDRVLFVMIAAVALVYLLMLLKKQKPDHHHTPFAAA
>NZ_CP041131.1|WP_015377324.1|1866533_1867274_-|pyruvate-formate-lyase-1-activating-protein
MSVTGRIHSFESCGTVDGPGIRFIVFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKDAVAYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRRYDPVIDELLDTTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLAKRNQRTWIRYVVVPGWSDDDKSAHLLGEFTKDMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKAETMDRVKGILESYGHKVIY
>NZ_CP041131.1|WP_016928324.1|1867555_1869838_-|formate-C-acetyltransferase
MTELNEKLANAWEGFSKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATQATTTLWDKVMEGIKLENRTHAPVDFDTNVASTIISHDAGYIAKELETIVGLQTDAPLKRALIPFGGIKMVEGSCKVYGRELDPQLKKVFTEYRKTHNQGVFDVYTKDILNCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDFLMADKLNQFKSLQEKLENGEDLEMTIQLREEIAEQHRALAQIKEMAAKYGYDISGPATSAQEAVQWTYFGYLAAVKSQNGAAMSFGRVSTFLDVFIERDIKAGKLTEEQAQELIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESLAGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSVQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKEAPMMDEVLDYDKVMARMDHFMDWLAKQYVTALNIIHYMHDKYSYEAALMALHDRDVYRTMACGIAGLSVAADSLSAIKYAKVTTIRDEDGLAIDFKVEGEYPQFGNNDARVDDIACDLVERFMKKIQKLRTYRNAVPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDDVRKANLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM
>NZ_CP041131.1|WP_019454548.1|1869892_1870753_-|formate-transporter-FocA
MKTDSPFDLILPAATAKIAEDAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTAGVPFGLAKLVGGICFSLGLMLVVVSGADLFTSTVLIVIAKASGRISWGQLGANWLNVYLGNLVGALFFVALIWFSGEYMVANGQWGLNVLQTADHKLHHTFIEAVCLGILANLMVCLAVWMSYSGRTLTDKMLAMVLPVGMFVASGFEHSIANMFMIPMGIVVKHFATPEFWQAVGAVPEQFAHLTVSNFIIDNLIPVTIGNIIGGGLLVGLTYWVIYLRGGREQH
>NZ_CP041131.1|WP_087762271.1|1871207_1872971_-|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO
MTQTFIPGKDAALEDSIARFQQKLSDLGFNIEEASWLNPVPHVWSVHIRDRDCPLCFTNGKGASKKAALASALGEYFERLSTNYFFADFYLGKQIAEGDFVHYPNEKWFPIPEDDALPAGILDERLHAFYDPQQELSASDLVDLQSGNADRGVCALPFTRQSDQQTVYIPMNIIGNLYVSNGMSAGNTANEARVQGLSEVFERYVKNRIIAESISLPAIPDEVLNRYPGVVEAIAKLEEEGFPILSYDASLGGNYPVICVVLFNPTNGTCFASFGAHPDFGVALERTVTELLQGRSLKDLDVFTAPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGSTQEEFATLMSIFDKEDAEVYIADYEHLGVYACRIIVPGMSDIYPAEDLLLANNSMGAHLRDTLLALPGSEWEPEEYLALIEQLDDEGLDDFTRVRELLGIASGKDNAWHTLRVGELKSMLALAGGDLDQALIWTEWTQDFNASVLSPARSNYYRCLQTLLLLAQEPEREAAQYYTAFVKMYGQEAVDAASAAISGEARFNGLFAVDADLKALPAHQALLAAYEKLQAAKRRHWAKA
>NZ_CP041131.1|WP_142109627.1|1874467_1875553_+|3-phosphoserine/phosphohydroxythreonine-transaminase
MTQVYNFSSGPAMLPVEVLRRAEQELCNWHGLGTSVMEISHRSKEFIAVAEQAEQDLRDLLKVPSNYKVLFCHGGARAQFAALPLNLLGDKATADYIDGGYWAHSAIKEAEKYCAPNVIDVKTRIDGLSGIKPMKEWQLSDDAAYVHYCPNETIDGVAIDETPDFGDKVIIGDYSSTILSRPLDVSRFGVIYAGAQKNIGPAGLTLVIVRDDLLGKARKEVPSILDYTVLAENDSMFNTPPTFAWYLSGLVFKWLKEQGGLVEMQKRNQAKAELLYATIDKSDFYRSQVAIANRSWMNVPFQLADATLDKVFLSEAEAIGLQALKGHRVVGGMRASIYNAMPLAGVQALTDFMADFERRHG

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Crispr_ID: NZ_CP041131_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041131_2

1858668-1858771

Orphan

Consensus_repeat	Method
CCGGCGGCTTCGCCTGCACCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041131_2

>merge|NZ_CP041131|2|1858668-1858771|CRISPRCasFinder
CCGGCTGCGCCGCAGCCGCCGGCGCGTTCTCCCTTTGATTTTACTGCCGCGCAGCGCGACAGTGCCGACGTCAGCGGAGCGGGTGGTTTCAGCGCCACCGGCGC

>NZ_CP041131|2|2|1858668-1858771|CRISPRCasFinder
CCGGCTGCGCCGCAGCCGCCGGCGC	GTTCTCCCTTTGATTTTACTGCCGCGCAGCGCGACAGTGCCGACGTCAGCGGAG
CGGGTGGTTTCAGCGCCACCGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041131.1\|WP_142109624.1\|1853235_1855002_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP041131.1\|WP_142109625.1\|1855241_1856213_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP041131.1\|WP_142109622.1\|1850738_1851464_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP041131.1\|WP_004928343.1\|1847929_1850209_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP041131.1\|WP_015377324.1\|1866533_1867274_-\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NZ_CP041131.1\|WP_019454555.1\|1861385_1861997_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP041131.1\|WP_019454548.1\|1869892_1870753_-\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|182746
NZ_CP041131.1\|WP_038880767.1\|1863460_1864753_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP041131.1\|WP_072265439.1\|1862004_1863351_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP041131.1\|WP_142109623.1\|1851493_1853233_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP041131.1\|WP_087762271.1\|1871207_1872971_-\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	unknown	unknown	gnl\|CDD\|132588
NZ_CP041131.1\|WP_004928347.1\|1847581_1847902_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP041131.1\|WP_016928324.1\|1867555_1869838_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NZ_CP041131.1\|WP_004928349.1\|1847003_1847225_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP041131.1\|WP_142109627.1\|1874467_1875553_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_CP041131.1\|WP_002211347.1\|1850414_1850633_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP041131.1\|WP_142109621.1\|1844970_1846917_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP041131.1\|WP_060421731.1\|1864804_1865170_-\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|378058
NZ_CP041131.1\|WP_033637849.1\|1865333_1866485_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NZ_CP041131.1\|WP_004928318.1\|1856867_1857362_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009

Protein	Function_ID	Function_description	E-value
NZ_CP041131.1\|WP_142109624.1\|1853235_1855002_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041131.1\|WP_142109625.1\|1855241_1856213_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP041131.1\|WP_142109622.1\|1850738_1851464_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	9.65318e-141
NZ_CP041131.1\|WP_004928343.1\|1847929_1850209_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP041131.1\|WP_015377324.1\|1866533_1867274_-\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NZ_CP041131.1\|WP_019454555.1\|1861385_1861997_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	4.66812e-101
NZ_CP041131.1\|WP_019454548.1\|1869892_1870753_-\|formate-transporter-FocA	gnl\|CDD\|182746	PRK10805, PRK10805, formate transporter; Provisional.	0
NZ_CP041131.1\|WP_038880767.1\|1863460_1864753_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP041131.1\|WP_072265439.1\|1862004_1863351_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP041131.1\|WP_142109623.1\|1851493_1853233_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041131.1\|WP_087762271.1\|1871207_1872971_-\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0
NZ_CP041131.1\|WP_004928347.1\|1847581_1847902_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.2253e-50
NZ_CP041131.1\|WP_016928324.1\|1867555_1869838_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP041131.1\|WP_004928349.1\|1847003_1847225_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.18407e-44
NZ_CP041131.1\|WP_142109627.1\|1874467_1875553_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_CP041131.1\|WP_002211347.1\|1850414_1850633_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP041131.1\|WP_142109621.1\|1844970_1846917_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP041131.1\|WP_060421731.1\|1864804_1865170_-\|DUF1801-domain-containing-protein	gnl\|CDD\|378058	pfam08818, DUF1801, Domain of unknown function (DU1801). This large family of bacterial proteins is uncharacterized. They contain a presumed domain about 110 amino acids in length.	5.56044e-12
NZ_CP041131.1\|WP_033637849.1\|1865333_1866485_+\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NZ_CP041131.1\|WP_004928318.1\|1856867_1857362_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.02041e-117

>NZ_CP041131.1|WP_004928318.1|1856867_1857362_+|leucine-responsive-transcriptional-regulator-Lrp
MADNKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIHGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP041131.1|WP_142109625.1|1855241_1856213_-|thioredoxin-disulfide-reductase
MGTAKHSKLLILGSGPAGYTAAVYAARANLSPVLITGMEQGGQLTTTTEVENWPGDAEGLTGPALMERMREHAEKFQTEIVFDHINSVDLQQRPFRLFGDSGEYSCDALIIATGASARYLGLPSEDAFKGKGVSACATCDGFFYRNQKVAVVGGGNTAVEEALYLSNIAAEVHLIHRRDSFRSEKILIDRLMDKVKSGNIVLHTDHTLDEVLGDEMGVTGVRIRSTKAENETRELELAGVFIAIGHSPNTGIFGGQLELENGYIKVQSGIHGNATQTTIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGIAGAEVC
>NZ_CP041131.1|WP_142109624.1|1853235_1855002_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MKKTRQQQLTRWLKTQSSLAQRWLRLSMLLGLFSGLLIVAQAWLLASLLHALIIEHTPREQLIPSFIWLAAAFALRALLSWLRERIGFLCGQVIRQRMRQQVLDKLQQLGPAWIQGKPAGSWASIIVEQIEDMQDYYSRYLPQMYLAVFIPLLILIAVFPINWAAGIILLATAPLIPLFMALVGMGAADANRRNFVALARLSGNFLDRLRGLDTLRLFDRAQAETAQIAKSSEDFRSRTMEVLRLAFLSSGVLEFFASISIAVVAVYFGFSYLGELNFGSYGLGVTLFSGFLVLILAPEFFQPLRDLGTFYHAKAQAIGAAEALETFLSAEGEQMGNGTQQLPADQPLTLQANALEILSPNGVLLAGPLSFTLQPQQRVALVGLSGAGKSSLLNLLLGFLPYRGSLTVNGIELRELSAETWRQQLSWVGQNPHLPAQTLRANILLGCPQADEAQLQQAVEHAYVSELLPYLPQGLDTEVGDNAARLSVGQAQRVAVARALIGPRSLLLLDEPAASLDAHSEQRVMQALNAASHQQTTLLVTHQLEDTEDYDQIWVMDNGRIVQQGDYATLSAQPGLFATLIAHRRGEL
>NZ_CP041131.1|WP_142109623.1|1851493_1853233_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRVLLPFLALYRRHSLLISLGILLAIVTLLASIGLLALSGWFLAASSLAGLAGLLTFNYMLPAAGVRGAAIFRTAGRYAERVVSHDATFRVLSHLRVFTFSKILPLTPGGIARFRQAELLNRLVADVDTLDHLYLRVISPLISAAVVILVVTYGLSWLDPALALTLGGILLLLLLLVPPVFYRAGKPIGGQLTALRGQYRTDLTAWLQGQAELVVFGAVNDFRQTLNATEQRWQRRQWQQASLSGKAQALMILASGLTVTLLLWLTAAGIGGDTQPGALIALFVFAALASFEALMPVAGAFQHLGQVIASATRVKQIIDRQPEVTFPAAGPAAADRAQLSLRQLSFTYPDQPQPVLRDVTLEVAAGEHIALLGRTGCGKSTLLQLLTRAWRTDGGNILLNGEPLEDYDETTLRRMTTVVSQRVHIFSDTLRENLRLAAPDADDASLSEVLQQVGLGKLLDSDGGLNAWLGEGGRQLSGGEQRRLGIARALLHPAPLLLLDEPTEGLDAETEQQILALLRRHCQGKTLILVTHRLYGLEHLDRICVMDDGRIVEQGDHATLMRRQGRYARFRNRISNLAP
>NZ_CP041131.1|WP_142109622.1|1850738_1851464_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRIVKLSPQSLAFPSPEGALRDPNGLLAIGGDLTAPRLLAAYERGIFPWYSPGEAILWWSPDPRAVLFPTEFHLNRSLKRFLRHNPFRITLNHDFAAVIAACAHRPDEGTWIGPEVQRAYQHLHRLGYAHSVEVWQDDQLVGGMYGVAQGALFCGESMFSRVTNASKCALMAFCRHFAAYGGELIDCQVLNAHTARLGAREIPRRQFLQQLSTLQRRPLAPACWEPQVISPQPAEPPSPVN
>NZ_CP041131.1|WP_002211347.1|1850414_1850633_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP041131.1|WP_004928343.1|1847929_1850209_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPAAREALEACTVDLAALRQELEAFIEQTTPTLPAGEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVSGANVLVAIFSEQESQAAYLLRKHDVSRLDVVNFISHGTRKDEPGQAPNAENPVNEEQSGGEDRMENFTTNLNQLARVGGIDPLIGRDRELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTLYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDQNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPTAEETVQIINGLKAKYEAHHDVRYTAKAIRAAVELSVKYINDRHLPDKAIDVIDEAGARSRLMPASKRKKTVNVADIESVVARIARIPEKTVSASDRDVLRNLGDRLKMLVFGQDQAIEALTEAIKMSRAGLGHERKPVGSFLFAGPTGVGKTEVTVQLAKAMDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVIKHPHAVVLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVRETERKSIGLVQQDNSTDAMEEIKKVFTPEFRNRLDNIIWFNHLSTEVIQQVVDKFIVELQAQLDAKGVSLEVSDEARDWLSVKGYDRAMGARPMARVMQENLKKPLANELLFGSLVDGGSVKVELDKDKKQLTYHFLSAAKRKADEGAVH
>NZ_CP041131.1|WP_004928347.1|1847581_1847902_+|ATP-dependent-Clp-protease-adapter-ClpS
MGNNNDWLNFEHLAEEKQIDAVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVFTAEVAETKVVHVNRYARENEHPLLCTLEKA
>NZ_CP041131.1|WP_004928349.1|1847003_1847225_-|cold-shock-like-protein-CspD
METGTVKWFNNAKGFGFICPAGGGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPKGNHASLIVPVESEALS
>NZ_CP041131.1|WP_142109621.1|1844970_1846917_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MAALLQLSGIRRSYRSGEQTVEVLKGISLSIDAGEMVAIMGASGSGKSTLMNILGCLDKPSAGVYRVAGQDVATLSDDALAQLRREHFGFIFQRYHLLPHLSAAHNVEVPAVYAGLGKAARRERAVALLRRLGLGERVNYRPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILKQLCAQGHTVILVTHDPAVARQAERIIEIRDGEIIADLRPAPQENAQAKPLALAAAAASWRQVGGRFREALVMAWRAMAANKMRTALTMLGIIIGIASVVSILVIGDAAKQMVLADIKSIGTNTVDIYPGKDFGDDDPTYRQSLKYGDLDALREQPYISALSPSISSSMRLRLGNVDAAANVNGVSEQFFRVYGMSFTQGVGIDPLQVQSQAQTVVIDANTQRRLFPHQKNVVGEVILVGNMPATVVGVAKEKQSMFGSSKTLNVWVPYSTMANRLMGNNYFDSITVRIRDGYDSKEAEQQLSRLLTLRHGKKDFFTYNMDSLVQTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARSGDVLQQFLIEAVLVCLVGGALGITLSFAIGLAVQLVLPGWQISFPPAALLSAFLCSTGIGVVFGYLPARNAARLNPIDALARE
>NZ_CP041131.1|WP_019454555.1|1861385_1861997_+|outer-membrane-lipoprotein-chaperone-LolA
MKKLLVACCLLSGFASTSVLADAAQDLQSRLAKVNSFHASFSQTVTSADGAAVQQGEGELWVKRPNLFNWHMTSPDESVLVSDGQTLWFYNPFVEQVTATWLKNATGNTPFMLITRNNASDWKQYNVKQKGDDFELTPKSASGNLKQFAISVTNSGTIRSFAAVEQDGQRSSYTLKSQQNVAADPAKFKFTPPKGVTLDDQRQ
>NZ_CP041131.1|WP_072265439.1|1862004_1863351_+|replication-associated-recombination-protein-A
MSNNLSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIGQVLDQAMGDKARGFGNQNVELPAETRRLLSELVGGDARRALNSLEMMADMAELDAKGVRVLTPELLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDAKEQADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGENYFPPEMAHTRYYQPTSRGLEGKIGEKLAWLAEQDQNSPTKRYR
>NZ_CP041131.1|WP_038880767.1|1863460_1864753_+|serine--tRNA-ligase
MLDPNLLRNELDAVAVKLARRGFKLDLDLLRSQEERRKVLQVETETLQAERNSRSKSIGAAKARGEDIEPLRREVNELGDKLDAAKAALDALQSEIRDYALTLPNLPDDAVPDGKDDSENLEVTRWGEPRQYDFAVRDHVDLGEMAGGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYLEAYVPYLVNHATLYGTGQLPKFGEDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIVEEESLPLKMTAHTPCFRAEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMDALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGACKTYDLEVWLPAQDTYREISSCSNMWDFQARRMQARCRSKADKKPRLVHTLNGSGLAVGRTLVAVLENYQQADGRIQVPEVLRPYMGGLEYIG
>NZ_CP041131.1|WP_060421731.1|1864804_1865170_-|DUF1801-domain-containing-protein
MSQANDAAVEALLADIGSTQGDLLAIVQQVRRIAAASGNGVTESVKYGGIMFSHSQFFCGVFAYRHHVTVEFGHGYRLEDRYLQLEGNGQYRRHIKLHSPDEVKSKHLADYIQQAYTLATG
>NZ_CP041131.1|WP_033637849.1|1865333_1866485_+|MFS-transporter
MSAYSRPVLLLLCGLLLLTVSIAVLNTLVPLWLTHAQLSTWQVGMVSSSYFSGNLLGTLVAGKLIQRVGFTRSYHLSCLVFAAATAGMVLSIDFWSWLGWRFFAGVGCAWIWVIVESALLRSGNLSNRGQLLAAYMIVYYLGTVTGQLLLSMTSTELLHVVPWVTAIVISAMLPMLFARVNRHEDEPQQAAVWTMLRRRSARLGINGCIISGIVLGSLYGLMPLYLSHQGMSDANVGYWMALLVSSGIVGQWPVGRLADRYGRLLVLRIQVFVVILASVAMLGNYAMAPSLFILGCAGFTLYPVAMSWACEKALPHELVAMNQALLMSYTIGSLLGPSMTALLMQNYSDRVLFVMIAAVALVYLLMLLKKQKPDHHHTPFAAA
>NZ_CP041131.1|WP_015377324.1|1866533_1867274_-|pyruvate-formate-lyase-1-activating-protein
MSVTGRIHSFESCGTVDGPGIRFIVFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKDAVAYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRRYDPVIDELLDTTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLAKRNQRTWIRYVVVPGWSDDDKSAHLLGEFTKDMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKAETMDRVKGILESYGHKVIY
>NZ_CP041131.1|WP_016928324.1|1867555_1869838_-|formate-C-acetyltransferase
MTELNEKLANAWEGFSKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATQATTTLWDKVMEGIKLENRTHAPVDFDTNVASTIISHDAGYIAKELETIVGLQTDAPLKRALIPFGGIKMVEGSCKVYGRELDPQLKKVFTEYRKTHNQGVFDVYTKDILNCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDFLMADKLNQFKSLQEKLENGEDLEMTIQLREEIAEQHRALAQIKEMAAKYGYDISGPATSAQEAVQWTYFGYLAAVKSQNGAAMSFGRVSTFLDVFIERDIKAGKLTEEQAQELIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESLAGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSVQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKEAPMMDEVLDYDKVMARMDHFMDWLAKQYVTALNIIHYMHDKYSYEAALMALHDRDVYRTMACGIAGLSVAADSLSAIKYAKVTTIRDEDGLAIDFKVEGEYPQFGNNDARVDDIACDLVERFMKKIQKLRTYRNAVPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDDVRKANLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM
>NZ_CP041131.1|WP_019454548.1|1869892_1870753_-|formate-transporter-FocA
MKTDSPFDLILPAATAKIAEDAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTAGVPFGLAKLVGGICFSLGLMLVVVSGADLFTSTVLIVIAKASGRISWGQLGANWLNVYLGNLVGALFFVALIWFSGEYMVANGQWGLNVLQTADHKLHHTFIEAVCLGILANLMVCLAVWMSYSGRTLTDKMLAMVLPVGMFVASGFEHSIANMFMIPMGIVVKHFATPEFWQAVGAVPEQFAHLTVSNFIIDNLIPVTIGNIIGGGLLVGLTYWVIYLRGGREQH
>NZ_CP041131.1|WP_087762271.1|1871207_1872971_-|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO
MTQTFIPGKDAALEDSIARFQQKLSDLGFNIEEASWLNPVPHVWSVHIRDRDCPLCFTNGKGASKKAALASALGEYFERLSTNYFFADFYLGKQIAEGDFVHYPNEKWFPIPEDDALPAGILDERLHAFYDPQQELSASDLVDLQSGNADRGVCALPFTRQSDQQTVYIPMNIIGNLYVSNGMSAGNTANEARVQGLSEVFERYVKNRIIAESISLPAIPDEVLNRYPGVVEAIAKLEEEGFPILSYDASLGGNYPVICVVLFNPTNGTCFASFGAHPDFGVALERTVTELLQGRSLKDLDVFTAPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGSTQEEFATLMSIFDKEDAEVYIADYEHLGVYACRIIVPGMSDIYPAEDLLLANNSMGAHLRDTLLALPGSEWEPEEYLALIEQLDDEGLDDFTRVRELLGIASGKDNAWHTLRVGELKSMLALAGGDLDQALIWTEWTQDFNASVLSPARSNYYRCLQTLLLLAQEPEREAAQYYTAFVKMYGQEAVDAASAAISGEARFNGLFAVDADLKALPAHQALLAAYEKLQAAKRRHWAKA
>NZ_CP041131.1|WP_142109627.1|1874467_1875553_+|3-phosphoserine/phosphohydroxythreonine-transaminase
MTQVYNFSSGPAMLPVEVLRRAEQELCNWHGLGTSVMEISHRSKEFIAVAEQAEQDLRDLLKVPSNYKVLFCHGGARAQFAALPLNLLGDKATADYIDGGYWAHSAIKEAEKYCAPNVIDVKTRIDGLSGIKPMKEWQLSDDAAYVHYCPNETIDGVAIDETPDFGDKVIIGDYSSTILSRPLDVSRFGVIYAGAQKNIGPAGLTLVIVRDDLLGKARKEVPSILDYTVLAENDSMFNTPPTFAWYLSGLVFKWLKEQGGLVEMQKRNQAKAELLYATIDKSDFYRSQVAIANRSWMNVPFQLADATLDKVFLSEAEAIGLQALKGHRVVGGMRASIYNAMPLAGVQALTDFMADFERRHG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	666085-666113	4	0.862
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	617659-617687	4	0.862
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP040761	Paracoccus sp. 2251 plasmid unnamed5, complete sequence	203982-204010	5	0.828
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NC_015146	Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, complete sequence	431-459	5	0.828
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	312359-312387	5	0.828
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	74790-74818	5	0.828
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	MK816297	Pseudomonas virus PBPA162, complete genome	143-171	5	0.828
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	825880-825908	5	0.828
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	555030-555058	5	0.828
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	470456-470484	6	0.793
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	522579-522607	6	0.793
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	568641-568669	6	0.793
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	204370-204398	7	0.759
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	514667-514695	7	0.759
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	225343-225371	7	0.759
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	6422-6450	7	0.759
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	17789-17817	7	0.759
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP014276	Martelella sp. AD-3 plasmid unnamed1, complete sequence	263528-263556	7	0.759
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP039426	Citricoccus sp. SGAir0253 plasmid unnamed2, complete sequence	96041-96069	8	0.724
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP039431	Citricoccus sp. SGAir0453 plasmid unnamed2, complete sequence	96041-96069	8	0.724
NZ_CP041131_1	1.1\|1858375\|29\|NZ_CP041131\|CRISPRCasFinder	1858375-1858403	29	NZ_CP026110	Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence	69764-69792	8	0.724

1. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 4, identity: 0.862

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cttcgccggcaccggcggcttcgccaggt	Protospacer
******* ***************** *

2. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 4, identity: 0.862

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cttcgccggcaccggcggcttcgccaggt	Protospacer
******* ***************** *

3. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP040761 (Paracoccus sp. 2251 plasmid unnamed5, complete sequence) position: , mismatch: 5, identity: 0.828

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
gcccgcctgccccggcggctgcgcctgca	Protospacer
 ..******* ********* ********

4. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NC_015146 (Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, complete sequence) position: , mismatch: 5, identity: 0.828

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
gatcgcctggaccggcggcttcgccgtca	Protospacer
  ******* ***************  **

5. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 5, identity: 0.828

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cgtgctctgcaccggcggcttcgccttca	Protospacer
* *  .******************** **

6. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

cttcgcctgcaccggcggcttcgcctgca---	CRISPR spacer
cttcgcctgcaccgccggctgcg---gcacgt	Protospacer
************** ***** **   ***

7. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to MK816297 (Pseudomonas virus PBPA162, complete genome) position: , mismatch: 5, identity: 0.828

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
ctgtgcctgcacctgcggctgcgcctgcg	Protospacer
** .********* ****** *******.

8. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

cttcgcctgcaccggcggcttcgcctgca---	CRISPR spacer
cttcgcctgcaccgccggctgcg---gcacgt	Protospacer
************** ***** **   ***

9. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 5, identity: 0.828

cttcgcctgcaccggcggcttcgcctgca---	CRISPR spacer
cttcgcctgcaccgccggctgcg---gcacgt	Protospacer
************** ***** **   ***

10. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.793

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cggtgcctgcatcggcgccttcgcctgcg	Protospacer
*  .*******.***** **********.

11. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cttcgcctgcacgggcggcttcaaccccg	Protospacer
************ *********. *. *.

12. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 6, identity: 0.793

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cctcgccggccccggcggcttcgccaggt	Protospacer
*.***** ** ************** *

13. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cttcgcctgcaccggaggcttcgatgttg	Protospacer
*************** ******* .  ..

14. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cttcgcctgcaccggaggcttcgatgttg	Protospacer
*************** ******* .  ..

15. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
gctcgcctgcacgggcggcttcgaccgag	Protospacer
 .********** ********** *.* .

16. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 7, identity: 0.759

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cacgcgctgcaccggcggcttcatctgca	Protospacer
* .   ****************..*****

17. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 7, identity: 0.759

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cttccccggcaccggcggcttcggccctg	Protospacer
**** ** *************** *. ..

18. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP014276 (Martelella sp. AD-3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
cttcgccggaaccggcggcttcggtccct	Protospacer
******* * ************* .. *

19. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP039426 (Citricoccus sp. SGAir0253 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.724

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
gatcgccctcaccggcggcttcgccctgt	Protospacer
  *****. ****************.

20. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP039431 (Citricoccus sp. SGAir0453 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.724

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
gatcgccctcaccggcggcttcgccctgt	Protospacer
  *****. ****************.

21. spacer 1.1|1858375|29|NZ_CP041131|CRISPRCasFinder matches to NZ_CP026110 (Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence) position: , mismatch: 8, identity: 0.724

cttcgcctgcaccggcggcttcgcctgca	CRISPR spacer
tgtcgccggcaccgacggcttcgccatat	Protospacer
. ***** ******.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

819963 : 894281

Erwinia_phage(21.21%)

tRNA,plate,transposase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142109283.1\|819963_821010_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_094460532.1\|820987_821752_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-52	45.5
WP_047728898.1\|821745_822372_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.3e-34	49.4
WP_142109284.1\|822679_823693_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	8.2e-08	38.6
WP_004932578.1\|823747_824746_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
WP_142110720.1\|827693_828578_-	hypothetical protein	NA	NA	NA	NA
WP_084826825.1\|828715_829687_-	aldo/keto reductase	NA	NA	NA	NA
WP_033638672.1\|829699_830458_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	9.4e-17	29.5
WP_102985435.1\|830606_831500_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_033641898.1\|831918_832236_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_049200339.1\|832248_833610_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_142109285.1\|833653_835039_+	family 1 glycosylhydrolase	NA	NA	NA	NA
WP_060425318.1\|835054_835903_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_142109286.1\|836051_836813_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_142109287.1\|836822_838202_-	MFS transporter	NA	NA	NA	NA
WP_142109288.1\|838445_838934_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.8e-24	46.7
WP_004932541.1\|839045_840110_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.7e-112	61.9
WP_142109289.1\|840170_840683_+	recombination regulator RecX	NA	NA	NA	NA
WP_142109290.1\|840815_843443_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-80	37.7
WP_004091602.1\|843695_843881_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_033637176.1\|844812_845379_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_004932520.1\|845375_845804_+	DedA family protein	NA	NA	NA	NA
WP_142109291.1\|845886_847449_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_019455133.1\|847615_848131_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_038871814.1\|848197_849487_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_004932506.1\|849529_850321_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_004932504.1\|850490_851852_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|852065_852314_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_019455135.1\|852332_852881_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_004932485.1\|852933_853701_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015376707.1\|853749_854106_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_016929021.1\|854248_854476_-	transcriptional regulator	Q37973	Salmonella_virus	3.5e-20	65.7
WP_089185487.1\|854565_855717_-	hypothetical protein	Q6K1G4	Salmonella_virus	1.3e-105	51.8
WP_084826814.1\|855713_856175_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	5.8e-46	59.3
WP_142109292.1\|856187_858242_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	1.6e-31	31.5
WP_084826812.1\|858234_858357_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	2.8e-08	74.3
WP_084826811.1\|858389_858677_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	3.0e-24	62.5
WP_084826810.1\|858741_859251_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.6e-65	69.0
WP_142109293.1\|859263_860433_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.2e-180	79.4
WP_084826808.1\|860573_861131_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	2.3e-28	38.0
WP_142109294.1\|862977_866271_-\|tail	phage tail protein I	A0A2L0V120	Salmonella_phage	5.3e-274	48.2
WP_084826807.1\|866263_867172_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	8.4e-121	76.2
WP_084826806.1\|867176_867527_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	1.2e-38	69.0
WP_142109295.1\|867523_868159_-\|plate	phage baseplate assembly protein V	A0A2I8TV69	Erwinia_phage	3.5e-57	55.9
WP_084826804.1\|868244_868709_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.9e-37	53.3
WP_142109296.1\|868761_869274_-	glycoside hydrolase family protein	A0A218M4K3	Erwinia_phage	9.0e-56	63.1
WP_074055887.1\|869257_869476_-	hypothetical protein	B6SD15	Bacteriophage	1.4e-05	50.9
WP_084827882.1\|869479_869683_-\|tail	phage tail protein	F1BUQ5	Erwinia_phage	1.2e-19	68.7
WP_084826803.1\|869886_870069_-	hypothetical protein	NA	NA	NA	NA
WP_142110721.1\|870131_872207_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	3.6e-196	48.6
WP_084826802.1\|872211_872433_-	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	6.9e-13	53.6
WP_084826801.1\|872512_872818_-	hypothetical protein	NA	NA	NA	NA
WP_089185495.1\|873040_873949_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	2.9e-81	52.4
WP_047728881.1\|873997_874762_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_038871801.1\|875265_876342_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.2e-89	50.9
WP_060425327.1\|877527_878685_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_101428074.1\|878805_878853_-	hypothetical protein	NA	NA	NA	NA
WP_004932457.1\|878976_879318_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_004932456.1\|879630_880362_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_004932452.1\|880493_881471_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_142109297.1\|881470_882202_+	polyphenol oxidase	NA	NA	NA	NA
WP_025301647.1\|882332_884906_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	7.6e-127	35.0
WP_142109298.1\|890909_891713_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SKP9	Klosneuvirus	1.3e-27	29.6
WP_142109299.1\|891759_892644_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_142110722.1\|893843_894281_-\|transposase	IS200/IS605 family transposase	Q331U4	Clostridium_botulinum_C_phage	6.8e-20	39.2

DBSCAN-SWA_2

2088066 : 2114129

Clostridium_botulinum_C_phage(11.11%)

terminase,transposase,integrase

attL 2091879:2091921|attR 2112737:2112779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142110744.1\|2088066_2088504_+\|transposase	IS200/IS605 family transposase	Q331U4	Clostridium_botulinum_C_phage	5.2e-20	38.5
WP_033638067.1\|2088568_2088799_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.8e-17	64.7
WP_038875847.1\|2089141_2089660_+	non-heme ferritin	NA	NA	NA	NA
WP_142109697.1\|2089953_2090370_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_142109698.1\|2090372_2091254_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_061872086.1\|2091323_2091665_+	YebY family protein	NA	NA	NA	NA
2091879:2091921	attL	NA	NA	NA	NA
WP_142109699.1\|2091983_2092454_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.2e-39	54.8
WP_142109700.1\|2094347_2094776_-	hypothetical protein	NA	NA	NA	NA
WP_142110745.1\|2095387_2095579_-	hypothetical protein	A0A248SL66	Klebsiella_phage	1.4e-09	53.3
WP_142109701.1\|2096285_2096567_+	hypothetical protein	NA	NA	NA	NA
WP_142109702.1\|2096550_2096730_-	hypothetical protein	NA	NA	NA	NA
WP_142109703.1\|2097178_2097541_+	hypothetical protein	NA	NA	NA	NA
WP_142109704.1\|2099091_2100264_+	hypothetical protein	NA	NA	NA	NA
WP_142109705.1\|2100623_2101877_+	hypothetical protein	NA	NA	NA	NA
WP_142109706.1\|2101893_2102637_+	hypothetical protein	NA	NA	NA	NA
WP_142109707.1\|2102703_2103519_+	hypothetical protein	NA	NA	NA	NA
WP_142109708.1\|2103543_2104209_+	hypothetical protein	NA	NA	NA	NA
WP_004940920.1\|2104352_2104592_+	hypothetical protein	NA	NA	NA	NA
WP_142109709.1\|2104588_2105137_+	glycoside hydrolase family protein	I6PBN2	Cronobacter_phage	6.8e-25	42.6
WP_142109710.1\|2105808_2106021_+	hypothetical protein	A0A2I6PFS5	Proteus_phage	4.9e-08	44.4
WP_142109711.1\|2106089_2106953_+\|terminase	terminase	A0A1I9KFG9	Aeromonas_phage	4.2e-45	49.0
WP_142110746.1\|2107000_2108665_+\|terminase	terminase	A0A2R2Z350	Escherichia_phage	3.5e-250	74.5
WP_142110747.1\|2110725_2111496_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_142109712.1\|2112373_2112586_-	hypothetical protein	NA	NA	NA	NA
WP_000537152.1\|2112993_2113278_+\|transposase	IS3 family transposase	NA	NA	NA	NA
2112737:2112779	attR	NA	NA	NA	NA
WP_142109713.1\|2113274_2114129_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-80	56.2

DBSCAN-SWA_3

4553653 : 4592691

Erwinia_phage(51.28%)

tRNA,terminase,lysis,head,portal,plate,tail,capsid,integrase

attL 4559832:4559887|attR 4593772:4593827

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049198481.1\|4553653_4554667_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.3e-110	59.8
WP_001144069.1\|4554992_4555208_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_025304325.1\|4555344_4557093_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.8
WP_004937194.1\|4557250_4559092_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_060419767.1\|4559166_4559655_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
4559832:4559887	attL	NA	NA	NA	NA
WP_071998163.1\|4560035_4560266_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	3.2e-21	64.5
WP_142110537.1\|4560356_4561505_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	8.9e-136	64.9
WP_015379102.1\|4561501_4561987_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-47	65.7
WP_142110538.1\|4562167_4564837_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	2.2e-105	39.6
WP_102984926.1\|4564829_4564952_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	1.5e-09	72.5
WP_015379104.1\|4564984_4565266_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.8e-26	70.1
WP_023447563.1\|4565320_4565830_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
WP_142110539.1\|4565845_4567015_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	2.1e-185	82.0
WP_142110540.1\|4567291_4567837_-\|tail	tail fiber assembly protein	A0A222YWC2	Escherichia_phage	1.5e-37	46.9
WP_015379109.1\|4570678_4571212_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	4.3e-77	76.6
WP_033639347.1\|4571204_4572113_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	5.6e-109	68.9
WP_142110541.1\|4572117_4572468_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	8.4e-37	65.5
WP_121976857.1\|4572615_4573245_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.4e-74	72.3
WP_128868867.1\|4573318_4573765_-	phage virion morphogenesis protein	O80313	Escherichia_phage	7.9e-40	57.7
WP_033639343.1\|4573751_4574225_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.4e-49	62.5
WP_033639342.1\|4574320_4574749_-\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	1.2e-13	35.9
WP_142110542.1\|4574745_4575258_-	glycoside hydrolase family protein	A0A218M4K3	Erwinia_phage	1.9e-58	66.9
WP_031231709.1\|4575241_4575451_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
WP_043148052.1\|4575455_4575659_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	7.0e-20	68.7
WP_033639340.1\|4575658_4576147_-\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.1e-39	54.3
WP_033649039.1\|4576240_4576900_-\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	5.2e-80	69.4
WP_142110543.1\|4576902_4578087_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	1.7e-158	78.3
WP_060431382.1\|4578129_4578945_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	1.0e-69	52.8
WP_103101123.1\|4579087_4580860_+\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	2.0e-291	82.0
WP_060445964.1\|4580859_4581546_+	hypothetical protein	V9IQL5	Stenotrophomonas_phage	2.0e-18	29.7
WP_033639335.1\|4581542_4582577_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	5.0e-162	80.2
WP_033633573.1\|4582621_4582963_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_142110544.1\|4583385_4583592_+	hypothetical protein	NA	NA	NA	NA
WP_072269783.1\|4583747_4584398_-	hypothetical protein	NA	NA	NA	NA
WP_060431383.1\|4584394_4585288_-	DNA-processing protein DprA	S6BFL3	Thermus_phage	2.5e-32	39.9
WP_142110545.1\|4585872_4588089_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	3.3e-243	58.7
WP_089197475.1\|4588085_4588412_-	hypothetical protein	NA	NA	NA	NA
WP_126502296.1\|4588408_4588726_-	hypothetical protein	NA	NA	NA	NA
WP_015379131.1\|4588715_4588997_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
WP_033639330.1\|4589119_4589344_-	hypothetical protein	Q6K1F5	Salmonella_virus	9.8e-15	58.3
WP_122078013.1\|4589343_4589586_-	DUF2732 family protein	A0A218M4I9	Erwinia_phage	2.8e-07	49.2
WP_043148063.1\|4589649_4589952_-	hypothetical protein	NA	NA	NA	NA
WP_126502299.1\|4589963_4590143_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	5.6e-05	49.0
WP_142110546.1\|4590153_4590663_-	hypothetical protein	A0A1S6L008	Salmonella_phage	7.1e-45	54.2
WP_072009646.1\|4590694_4590958_-	hypothetical protein	A0A218M4I5	Erwinia_phage	5.1e-39	89.7
WP_142110547.1\|4591093_4591681_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	7.9e-64	61.3
WP_142110548.1\|4591680_4592691_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	8.0e-181	91.8
4593772:4593827	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041131

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection