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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP019715 Bacillus subtilis subsp. subtilis strain NBRC 13719 plasmid pBSU1, complete sequence 0 crisprs NA 0 0 1 0
NZ_AP019714 Bacillus subtilis subsp. subtilis strain NBRC 13719 3 crisprs csa3,cas3,DEDDh,WYL,DinG 0 1 10 0

Results visualization

1. NZ_AP019715
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 11548 : 68405 63 Enterococcus_phage(31.71%) tail,terminase,protease,portal,capsid,head,integrase attL 3388:3403|attR 72224:72239
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_AP019714
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019714_1 937540-937645 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019714_2 3167558-3167665 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019714_3 3710320-3710432 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_AP019714_2 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder 3167582-3167641 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|3167582|60|NZ_AP019714|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 699826 : 708192 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 1207413 : 1251187 49 Planktothrix_phage(25.0%) tRNA,coat NA
DBSCAN-SWA_3 1314049 : 1347782 46 uncultured_Caudovirales_phage(29.41%) tail,terminase,holin,plate,portal NA
DBSCAN-SWA_4 1868217 : 1874772 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_5 2146856 : 2282284 198 Bacillus_phage(97.8%) integrase,tail,holin,bacteriocin,transposase attL 2147279:2147294|attR 2281645:2281660
DBSCAN-SWA_6 2420472 : 2426568 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_7 2656401 : 2694543 55 uncultured_Caudovirales_phage(30.3%) capsid,tail,terminase,holin,plate,portal NA
DBSCAN-SWA_8 2828027 : 2881344 56 uncultured_Mediterranean_phage(12.5%) tRNA,coat,protease NA
DBSCAN-SWA_9 3455107 : 3466304 14 Organic_Lake_phycodnavirus(50.0%) holin NA
DBSCAN-SWA_10 3828979 : 3905341 78 Bacillus_phage(26.67%) protease,tRNA,coat,bacteriocin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage