CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_AP019718	Clostridium butyricum strain NBRC 13949 plasmid pCBU2, complete sequence	0 crisprs	NA	0	0	0
NZ_AP019716	Clostridium butyricum strain NBRC 13949	5 crisprs	cas3,csa3,DEDDh,DinG,WYL	1	2	10
NZ_AP019719	Clostridium butyricum strain NBRC 13949 plasmid pCBU3, complete sequence	0 crisprs	NA	0	0	0
NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	2 crisprs	csa3,DEDDh,RT	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019716_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019716_1

558386-558459

Orphan

Consensus_repeat	Method
TTGCTCGCCTGAGAAAGTTCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019716_1

>merge|NZ_AP019716|1|558386-558459|CRISPRCasFinder
TTGCTCGCCTGAGAAAGTTCAACTGACCAAATGTAAAATTTGGAGTTTCACTTGCTCGCTGAGAAAGTTCAACT

>NZ_AP019716|1|1|558386-558459|CRISPRCasFinder
TTGCTCGCCTGAGAAAGTTCAACT	GACCAAATGTAAAATTTGGAGTTTCA
CTTGCTCGCTGAGAAAGTTCAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019716.1\|WP_003429483.1\|566601_568050_+\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NZ_AP019716.1\|WP_002582221.1\|560664_561519_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100082
NZ_AP019716.1\|WP_002582235.1\|549966_550986_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_AP019716.1\|WP_003411789.1\|548641_549208_+\|Maf-like-protein	unknown	unknown	gnl\|CDD\|234618
NZ_AP019716.1\|WP_003411724.1\|552342_555339_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|274573
NZ_AP019716.1\|WP_002582225.1\|557301_558102_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|131023
NZ_AP019716.1\|WP_002582226.1\|556620_557280_+\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|179052
NZ_AP019716.1\|WP_002582214.1\|568902_569202_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_AP019716.1\|WP_162830838.1\|558783_559911_+\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_AP019716.1\|WP_002582233.1\|551854_552346_+\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NZ_AP019716.1\|WP_035761776.1\|565760_566462_+\|DUF2344-domain-containing-protein	unknown	unknown	gnl\|CDD\|274865
NZ_AP019716.1\|WP_002582215.1\|568511_568898_+\|ribosomal-processing-cysteine-protease-Prp	unknown	unknown	gnl\|CDD\|184740
NZ_AP019716.1\|WP_002582224.1\|558116_558383_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|237579
NZ_AP019716.1\|WP_002582219.1\|563923_565777_+\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_AP019716.1\|WP_002582236.1\|549253_549943_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_AP019716.1\|WP_035761770.1\|555727_556411_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_AP019716.1\|WP_002582216.1\|568195_568507_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_AP019716.1\|WP_051119242.1\|561717_563700_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|131935
NZ_AP019716.1\|WP_002582234.1\|550993_551842_+\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_AP019716.1\|WP_003411715.1\|560040_560520_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP019716.1\|WP_003429483.1\|566601_568050_+\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	3.10382e-102
NZ_AP019716.1\|WP_002582221.1\|560664_561519_+\|site-2-protease-family-protein	gnl\|CDD\|100082	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.	2.57527e-33
NZ_AP019716.1\|WP_002582235.1\|549966_550986_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_AP019716.1\|WP_003411789.1\|548641_549208_+\|Maf-like-protein	gnl\|CDD\|234618	PRK00078, PRK00078, Maf-like protein; Reviewed.	9.23237e-98
NZ_AP019716.1\|WP_003411724.1\|552342_555339_+\|penicillin-binding-protein	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	7.92217e-75
NZ_AP019716.1\|WP_002582225.1\|557301_558102_+\|septum-site-determining-protein-MinD	gnl\|CDD\|131023	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division].	5.1994e-141
NZ_AP019716.1\|WP_002582226.1\|556620_557280_+\|septum-site-determining-protein-MinC	gnl\|CDD\|179052	PRK00513, minC, septum formation inhibitor; Reviewed.	1.03727e-90
NZ_AP019716.1\|WP_002582214.1\|568902_569202_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	2.73716e-56
NZ_AP019716.1\|WP_162830838.1\|558783_559911_+\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	6.86668e-117
NZ_AP019716.1\|WP_002582233.1\|551854_552346_+\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	6.82137e-09
NZ_AP019716.1\|WP_035761776.1\|565760_566462_+\|DUF2344-domain-containing-protein	gnl\|CDD\|274865	TIGR03936, radical_SAM-linked_protein, radical SAM-linked protein. This model describes an uncharacterized protein encoded adjacent to, or as a fusion protein with, an uncharacterized radical SAM protein.	2.08639e-73
NZ_AP019716.1\|WP_002582215.1\|568511_568898_+\|ribosomal-processing-cysteine-protease-Prp	gnl\|CDD\|184740	PRK14553, PRK14553, ribosomal-processing cysteine protease Prp.	5.72218e-29
NZ_AP019716.1\|WP_002582224.1\|558116_558383_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|237579	PRK13987, PRK13987, cell division topological specificity factor MinE; Provisional.	4.66067e-38
NZ_AP019716.1\|WP_002582219.1\|563923_565777_+\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_AP019716.1\|WP_002582236.1\|549253_549943_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.09328e-111
NZ_AP019716.1\|WP_035761770.1\|555727_556411_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	3.62219e-90
NZ_AP019716.1\|WP_002582216.1\|568195_568507_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	7.89077e-51
NZ_AP019716.1\|WP_051119242.1\|561717_563700_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|131935	TIGR02889, Sporulation_protein_YpeB, germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function. [Cellular processes, Sporulation and germination].	0.000304681
NZ_AP019716.1\|WP_002582234.1\|550993_551842_+\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	5.32068e-77

>NZ_AP019716.1|WP_002582224.1|558116_558383_+|cell-division-topological-specificity-factor-MinE
MGFFKSLNSKPTPKQVAKDRLKLILIHDRGEIAPDIIEKIREEILGVISKYIDIQIDDVEISVNKNVEEGDNSSALVANIPIKNLKGR
>NZ_AP019716.1|WP_002582225.1|557301_558102_+|septum-site-determining-protein-MinD
MGVSIVITSGKGGVGKTTTTANIGTALASLGKKVVVIDGDTGLRNLDVLLGLENRIVYTIIDVIEGRCRLKQGLIKDKRFQNLCLLPTAQTKDKDDISPQDMLRIVNELKEEFDYVLIDSPAGIEQGFENAVIGADRAVVVVNPEITSVRDADRVIGKLDAKGLEDHGVIINRLNYEMTKNGDMLDVSDIIETLSIELLGVVPDDKNITVSTNRGEPIVLDEEAIAGHAFKNIARRIIGEEVPLLELHTTANEGFFKSFLKLFKRS
>NZ_AP019716.1|WP_002582226.1|556620_557280_+|septum-site-determining-protein-MinC
MYNNDGILIKGNRDGINTTINMSKFSSFEDMITLLIKKLSKGKQFYQGTTLILRIDLKLLNEKNYEELKEILLSKIGLKDIVFEDLEKEAEDINQKENKVFTGVYEGKTKFIRKTVRSGQSVNYRGNIVIIGDVNSGAEVYATGNVVVLGRIQGKVSAGTNGNNKAIIAAFLLQPELLKISNIIAMSPDDTEKPNYPELAKIKDGTIIVEPYLPNKYIY
>NZ_AP019716.1|WP_035761770.1|555727_556411_+|DNA/RNA-nuclease-SfsA
MKYDKITKGRFISRPNRFIANVEIDGINEVCHVKNTGRCKELLIPGSTTVYVQESDNPNRKTKYSLIGVLKDDKKINMDSQVTNKVVHEWILKGNIFENVKLIKPEKKYKNSRFDFYVETENEKAFIEVKGVTLEENGVVRFPDAPTERGVKHINELCECIDDGYKAYIIFVIQMKDVLYFTPNDDTHKAFGDALRIAHKKGVQVLAVNCYVSEDSIDICDYVEVRL
>NZ_AP019716.1|WP_003411724.1|552342_555339_+|penicillin-binding-protein
MIVNKPVKKKKISRYTVLCIIMGIIFGAITLRLLYLQVFSYEEYKEKANTTSTRFVSESAPRGEIYDSNGVTLATNVRTYSLTYTETDVTQKNFYSTMSELFKILDESNENIQDTMLLKVKDDGTMYFDYLSSDKDSQNYSELRFKKDRGFNEPIQNKLFPEITEFSDEQTNKINEELLKITPEESFYMLVKNYNLIELIDPEYNSTKEKKEAYKNMTGEEITQKILDAGYSLNDLRKYMLVKDTIKIQSLKGYKSVTIASNIKKDTVLIIKQKLNDMPGIDVSSVLIRDYPYNNLASSVLGYVSTINSAEEEKYSMRGYDVSTDLIGKAGIESAFEEQLKAVKGGKTVKVNSSGRVTEKLFELESYPGNNVHLTIDSNMQYVAEQALADGIKEIQQNGTDTDGYRFRNATRGALVAVDVKSGKILSLVSYPDYNPNLFTIPGTLTSEESKQYFNPDLETFGQELINRMNLNKTVDDLFPKDSKGVRQDNNDLYPRPFYNYATMSLIPPGSTFKPLTSIAGLESDVITPSTTINDTGKFNIHPEVFGKGFAPECLQYTNYGAGHGNLNVAGALEVSCNFFFYETAYRLYMLNGGNLNALDSLAKYAWGFGLGVDPNGSEKAATGIEIKENFGQTYNFTSWKKQAINYAKFELVDYLEKGDYKGMGYVFIPFDIRYSEDDNEEVKNAKKAIKDKMEETLAKVGTDDFSNINQNDFTKEIKKYVQIIMDNSDVYKQRVSDYEASGKTVNLDSQANIVAEVIAKFTLNDKPVEIISPAQLIYASIGQGMNNYTPLQLASYISTLVNGGTRYKLHLVDKVTDNDGNVVQEFKPEVLGEMHLDKNDVEAVKYGMSKVNSDDSGTAASKWQGFPITTGGKTGTADFAENQKERGRAPYATYVSFAPLDDPEIAVVAVVFDGGHGGSIAGAVRAVFEEYFKDRILAGDPNYASKSESFRKYVLGNPLTKNKENSTENNSSNNSTNNSQSNSATGNISNQTVPATD
>NZ_AP019716.1|WP_002582233.1|551854_552346_+|rod-shape-determining-protein-MreD
MERLILILVSIGLAILDNSIIPFFSIHEGYPSLLFTFAIAYSLVNKREKSVFIGIVTGILQDIFFFNGFGVNCFLNLLLCFLASVIGEGMIKNKKLVPVVSMFIITILKYMGVFAIFCILNIKVDLSKGLYMAVYNAVVMFFGYKYIINIYDDEYTKQRWRFK
>NZ_AP019716.1|WP_002582234.1|550993_551842_+|rod-shape-determining-protein-MreC
MKLLKNKLAVTIIVLSVTFLGLIAYTVKKENRSIIESGAGSALNPVQRLLYSATNQVKETLDFFLNFSEVKSQNKELVDENEDLKNKLAEYSDLKEENDRFREMLNFAEERNNYNYIGCDIIGYSGGSFNDGYIVNKGTNDNIAKGMVVITNKGLVGQVTSVGSNWSIVQTLANENIAVSVMVESTRDATGYLTGYKDSQNRNLAKVYDLPMDSEVKEGDVIMTSGVGMVYPKEIRIGEVISVEEDKVKVMKSAIIKPYVDFNKLEELFIVSPKDTREVKYD
>NZ_AP019716.1|WP_002582235.1|549966_550986_+|rod-shape-determining-protein
MGFFGSGKDMGIDLGTANTLVFVKGKGIVLREPSVVAMNNMTKKTLAVGSEAKLMIGRTPGNIVAIRPLKDGVIADFDTAQTMMKNLIEKVSTKNAFKSPRIIVCYPSGVTEVEKRAIEEATKLSGARDVILMEEPMAAAIGAGLPVSEPTGSMIVDIGGGTTEVAIISLGGIVTSKSLRVAGDELDQSIISYIKKEFNLMVGERTAEQVKMEIGSAYKLDGEEEMIMEIKGRDMISGLPKIVEISESQVREALKEPVYQIIESIKTTLEKTPPELAADIMEKGIMLAGGGAYLRGLDVLINKETNMPVHIAEAPLDCVVLGAGKALEDFDKISRDQRG
>NZ_AP019716.1|WP_002582236.1|549253_549943_+|DNA-repair-protein-RadC
MNNSLNIRNIPEYERPKEKLLTYGAETLNNSELLAIILGSGVKGENAIELSNRILNEFDDLDGILTADYNEIISINGIKSGKASQIMALSELFKRFRTLRAGKRNIKITSPKDLADLLMGEMSYLNQEVLKVITLSTKNTIIDAKDVFIGSLNNSIVHPREIFKRAITSHSASVIICHNHPSGDPTPSREDINITLRIKECGKIIGIPLIDHIIIGNNTFVSLKEKGLI
>NZ_AP019716.1|WP_003411789.1|548641_549208_+|Maf-like-protein
MKIILASASERRQELLGRLVDDFKIEVSKFDEDTVPFEGDIDKYVKAVALGKALDVESRINEEAIIISADTVVVQNDNILGKPKDKQDAFKMLKSLQGKSHFVYSGIVVINTKTNKTKQESLGTKVTFSEISDEEILEYIETKEPLDKAGSYGIQGRGGVFVKGIEGCYYNVVGLPLNKLKSMLDEVK
>NZ_AP019716.1|WP_162830838.1|558783_559911_+|rod-shape-determining-protein-RodA
MFKQFKLDIKLIKDIDKTLLFSMIALVLYGILNIYLCTKGGKYDGFAFKQFVWLIISLVVLYIFLSIDYTIMMNYVPLFYWGSVILLIATMFFGSEINGAKGWIRLGPLSLQASEIAKIGIILMLAKKLDEMDGKINDVKNFFTLVFYTAVPVLFIIIQPDMGMTMVCFFIVLGIFFVAGLDMKIIGGGLASLVIAIIVVINSSFIPAYQKSRFTGFLNPEADYAGNGYHLTQSLIGIGSGGILGSRPSLKADAATGYAAQNVPEVHTDFIFSAIAEQLGLLGAAFLLILYGFLIYEMISIARTSKDICGSVICVGIVSYFLFAILQNIGMTIGLLPITGITLPLISYGGSSLLTTVISVGLVLNVGMRRKKIHF
>NZ_AP019716.1|WP_003411715.1|560040_560520_+|hypothetical-protein
MGNYSSAYEEYYKNINNKSITKESGNRGPFLNRGVNNTQSNKFQSSNGEETYYFSKDYWIRRIERELAGSLALLACFMGLKYTNIKNVQDFYKWCKQNVVSEFNYDQSVEVLNSMEIGTFKTKDFKIGTFQIEDLKSENLKTEMKNFKEYINKLQGEKV
>NZ_AP019716.1|WP_002582221.1|560664_561519_+|site-2-protease-family-protein
MKKWIVILLVEFLALMWIADFQASVIISFLWIILHEFSHILTAKRFGCTFNKINISIWGVKADLIDFDELLEKDKLVVYLAGPVFNITMSIVLFCLYSVFKLNYLKSSIIINLCLGAFNLLPAYPLDGARILEILLSKKFLYKKSKKITECISIIISGVLFILFNIMLLLHKVNISLFLASILMGYTTFLEKEKTMYIIMDDMIKKVRRLKKYNYMENKSISVYYKKGLVNVLTLVDKNKFNSFYILDDDMRLITIIHEDELIMALKEYGNITLEDYIKIRNNH
>NZ_AP019716.1|WP_051119242.1|561717_563700_+|S-layer-homology-domain-containing-protein
MTSTAFAAELDSKNFEQAIVNVKSIVSISDDYKNFSHSSREISNGNNSVTVWDLEWETDDEKGGYISAKVDSYGNLCDYNNYNNKTDTSGLAKVSKEKAESTAKEFLGKAMPEFSKDMKLVNSNIYSDEYYFVYQQYVNDIPVNFIKVNVGVNKFTGEISSYSGLKPGTKKLDYPQVDNVIGIENAEKIYIDKIQNDLCYYSTYDYKEKKNNTVALYSFDSNKAVDAKSGEIVSLDNYRFNEYLDKNSGSNSVTEADSAGLSEVEKDEVNKVSGLISKEKAQEIINENSDLLSSMKIEDIVLRKTYRGDSYLWQLSFDGGNAEINASTGEIIGFYIYKPSESKENKVTKEEAKNKAEALLNRLAKDKFKQTKLIDDYDTSESSEYNFNYIREIDGKGYMSNVLSVSVDKNTGNIISYSNTWDNNISLPDISQAISKTDAFNKYNEPENFGLQYVLNENNTVGLVYNFSGEDMVYYIDSISGKKIDRWGNEYKSNKVPEYSDIQGHWCEKTVKELLDSGYYIPGDKFNPDTNISQINFFRYMLSLNASDYSDDELYNILIDRGIIKEEEKNTLGAVTNKDAAKFITRYLGYEKLATNSKIFNNQFKDSIDDEYLGYANICYGLDIIKGDSKGNFNGDKNMTNAEAAVYIYNLVSQNNKVYL
>NZ_AP019716.1|WP_002582219.1|563923_565777_+|TIGR03960-family-B12-binding-radical-SAM-protein
MNRVSDDILFKVEKPARYIGGELNEIIKDPKEVDIRFAFCFPDVYEVGMSHLGSRILYHTINLREDTYCERTFAPWPDMEELMRENDIPLFTLETKDALNDFDILGFTLQYEMSYTNVLNMLDMCNIPIRASERSENDPIVMAGGPCAYNPEPLYDIVDFFEIGEGEEMMNDVLDVYKKYKGKGKKKEFLREIAKIEGIYVPSLYDVVYNEDGTIKSFEPKFEDVPKTVKKRIINNYTKVQFPTDIIVPYTEIVHDRVVLELFRGCTNGCRFCQAGMIYRPVREKTKEDLLDLTRELIKNTGYEEVSLSSLSTCDYSDIKGLVDDLMNEHEEKRVGVALPSIRVDAFSVDILKSIQKVRKTGLTFAPEAGSQRMRDIINKGLTEEKILDAATSAFESGWKTLKLYFMVGLPYEELDDCRGIGELAEKIVYRYKTAKKENNNKGLRLTVSTSILVPKPFTPFQWAPMARIEDVNQKINAVKDSIKSKCIVYNYHEQKTSVMESVFARGDRRLCDVLIKAFEKGARFDGWNQYFKYDIWQESLKECGLNEDFYAFRERSYDEILPWDFIDIGVNRKYLERENEKAKKAELTQNCRKGCTGCGVNVNFKEGECFEGAILS
>NZ_AP019716.1|WP_035761776.1|565760_566462_+|DUF2344-domain-containing-protein
MRYLVKFTKEENIKFISHLDVLKTIQKNIRRAELPIEYSQGFNPHMTTSIAQPLSVGVYSSGEYLDMVLVDEMNEDEIIARLNATAPGGIKYISALAIPYKEGEKKVPQAMAMIDGARYTIKVKYSDVSSLEEEIKKILQKDEWNIIKKTKKGEKETNIKAMIKEFKFWVKDNSLVMNTLISTGSREHLSADLLVKYIQENTSNAITDSFVDVKREEMYFYKNDKLVPLYKCV
>NZ_AP019716.1|WP_003429483.1|566601_568050_+|Rne/Rng-family-ribonuclease
MKEIFIERRENILRIAVKVNNELVESIVEEQNDEPIIGEIYKARVKNILPAINSIFIDMGLSKEGYMYYGNDLKDANIKKGDDILVEVVKEPINDKGAKLSHKVSIPGKYVVLNCYNQGISFSKRITDEIRKKEILDNIKPLDDVSITIRTEGINTDINILQKEIDKLYGEFENIKRKMKYSNELKKLYGEDPTLNRLLRNSYNDENTKIYVDNDSDFEKILKFIGEEKELQVEKYNGYRNLFDCYGIEKELIKLRHNKVNLHCGGYIVIDKTEAMYVIDVNSGKNIKERNFNKTILETNLEAAKEIGKQIRLRNLSGIIVVDFIDMRDRKQKEIVMSELYSSLKEDKGNVKIFPFTELDLVQIARRRQGKSIYEYMEEECSRCKGRGIILKLSYIEGLIRNEIIRMKEENSIDSFKIEIDSVYKDRIKDDIFSFIKEIDGLDNEIYLDYVDGIEGYRIEPLLFQTQKENLKKLKITEIEKA
>NZ_AP019716.1|WP_002582216.1|568195_568507_+|50S-ribosomal-protein-L21
MYAVLKTGGKQYRVQEGDVIYVEKLDAEVDSTVELEEVLAVGTDAGIKVGAPVVAGAKVVAKVAAQGKAKKVIVFKYKAKKDYRRKNGHRQPYTKLVIEKIEA
>NZ_AP019716.1|WP_002582215.1|568511_568898_+|ribosomal-processing-cysteine-protease-Prp
MVKVKVREKSNKIIGFVINGHALSDDRDFSSDSALVGEAFDLICNSVAVLSQSVIIGIDEVLKLNCTYEMKDGYLNLDLQDFTSEEIEKTQVLLRTFEKSLESVILGFDALVGKKKRMEYITLIKEEV
>NZ_AP019716.1|WP_002582214.1|568902_569202_+|50S-ribosomal-protein-L27
MLIMNLQLFAHKKGVGSTKNGRDSESKRLGVKSADGQFVLAGNILVRQRGTKIHPGENVGRGKDDTLFAKIDGVVKFERLGRDKKKASVYPVNVEAIAE

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Crispr_ID: NZ_AP019716_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019716_2

2098528-2098611

Orphan

Consensus_repeat	Method
TCCATATTCATTTAGATAATACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019716_2

>merge|NZ_AP019716|2|2098528-2098611|CRISPRCasFinder
TCCATATTCATTTAGATAATACCATGAATTATTACTATAAACCCATCCTCTTTGCATTATTCCATCTTCATTTAGATAATACCA

>NZ_AP019716|2|2|2098528-2098611|CRISPRCasFinder
TCCATATTCATTTAGATAATACCA	TGAATTATTACTATAAACCCATCCTCTTTGCATTAT
TCCATCTTCATTTAGATAATACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019716.1\|WP_035761879.1\|2089189_2090251_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NZ_AP019716.1\|WP_002580029.1\|2093169_2094090_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_AP019716.1\|WP_002580023.1\|2099333_2100704_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274983
NZ_AP019716.1\|WP_003427720.1\|2104320_2106357_-\|penicillin-binding-transpeptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223839
NZ_AP019716.1\|WP_045144113.1\|2096625_2098023_-\|peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|341130
NZ_AP019716.1\|WP_002580018.1\|2108342_2109239_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_AP019716.1\|WP_003411938.1\|2090353_2092021_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NZ_AP019716.1\|WP_035761877.1\|2094134_2095061_-\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NZ_AP019716.1\|WP_002580015.1\|2111733_2113113_-\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NZ_AP019716.1\|WP_035761876.1\|2095959_2096562_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|197609
NZ_AP019716.1\|WP_024040156.1\|2113384_2113969_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|225023
NZ_AP019716.1\|WP_003427727.1\|2106517_2106781_-\|late-competence-development-ComFB-family-protein	unknown	unknown	gnl\|CDD\|378482
NZ_AP019716.1\|WP_035761872.1\|2110295_2111744_-\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223246
NZ_AP019716.1\|WP_002580033.1\|2087512_2089045_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_002580019.1\|2106936_2108253_-\|[cytidine(C)-cytidine(C)-adenosine-(A)]-adding-enzyme	unknown	unknown	gnl\|CDD\|237339
NZ_AP019716.1\|WP_035761873.1\|2109407_2110124_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_AP019716.1\|WP_002580027.1\|2095198_2095696_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224248
NZ_AP019716.1\|WP_035761881.1\|2086273_2087323_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349907
NZ_AP019716.1\|WP_051119247.1\|2100773_2104001_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP019716.1\|WP_003411944.1\|2092397_2093009_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224882

Protein	Function_ID	Function_description	E-value
NZ_AP019716.1\|WP_035761879.1\|2089189_2090251_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
NZ_AP019716.1\|WP_002580029.1\|2093169_2094090_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.36116e-15
NZ_AP019716.1\|WP_002580023.1\|2099333_2100704_+\|hypothetical-protein	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	2.49277e-112
NZ_AP019716.1\|WP_003427720.1\|2104320_2106357_-\|penicillin-binding-transpeptidase-domain-containing-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	8.08282e-114
NZ_AP019716.1\|WP_045144113.1\|2096625_2098023_-\|peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.81376e-25
NZ_AP019716.1\|WP_002580018.1\|2108342_2109239_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.6785e-65
NZ_AP019716.1\|WP_003411938.1\|2090353_2092021_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NZ_AP019716.1\|WP_035761877.1\|2094134_2095061_-\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	1.37135e-119
NZ_AP019716.1\|WP_002580015.1\|2111733_2113113_-\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	4.2245e-171
NZ_AP019716.1\|WP_035761876.1\|2095959_2096562_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|197609	smart00257, LysM, Lysin motif.	0.000116381
NZ_AP019716.1\|WP_024040156.1\|2113384_2113969_+\|serine/threonine-protein-kinase	gnl\|CDD\|225023	COG2112, COG2112, Predicted Ser/Thr protein kinase [Signal transduction mechanisms].	7.52172e-06
NZ_AP019716.1\|WP_003427727.1\|2106517_2106781_-\|late-competence-development-ComFB-family-protein	gnl\|CDD\|378482	pfam10719, ComFB, Late competence development protein ComFB. This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.	2.66768e-22
NZ_AP019716.1\|WP_035761872.1\|2110295_2111744_-\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	7.02521e-114
NZ_AP019716.1\|WP_002580033.1\|2087512_2089045_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.55228e-19
NZ_AP019716.1\|WP_002580019.1\|2106936_2108253_-\|[cytidine(C)-cytidine(C)-adenosine-(A)]-adding-enzyme	gnl\|CDD\|237339	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional.	2.38723e-94
NZ_AP019716.1\|WP_035761873.1\|2109407_2110124_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.91679e-95
NZ_AP019716.1\|WP_002580027.1\|2095198_2095696_-\|hypothetical-protein	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	4.54629e-28
NZ_AP019716.1\|WP_035761881.1\|2086273_2087323_-\|M42-family-metallopeptidase	gnl\|CDD\|349907	cd05657, M42_glucanase_like, M42 Peptidase, endoglucanase-like subfamily. Peptidase M42 family, glucanase (endo-1,4-beta-glucanase or endoglucanase)-like subfamily. Proteins in this subfamily are co-catalytic metallopeptidases, found in archaea and bacteria. They show similarity to cellulase and endo-1,4-beta-glucanase (endoglucanase) which typically bind two zinc or cobalt atoms. Some of the enzymes exhibit typical aminopeptidase specificity, whereas others are also capable of N-terminal deblocking activity, i.e. hydrolyzing acylated N-terminal residues. Many of these enzymes are assembled either as tetrahedral dodecamers or as octahedral tetracosameric structures, with the active site located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers.	9.78205e-153
NZ_AP019716.1\|WP_051119247.1\|2100773_2104001_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.84101e-50
NZ_AP019716.1\|WP_003411944.1\|2092397_2093009_+\|hypothetical-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	2.81845e-10

>NZ_AP019716.1|WP_045144113.1|2096625_2098023_-|peptidoglycan-binding-domain-containing-protein
MNEFMYEKSTKISCILLIVLFLIYFLGAFYFKTHFFFKTSVNGIDISFKTVDEAKDIVYNELSDFKVVIKDDSNEDKIESKDINLEYNGDKKIEEIKEKQSFFKWASALIYNKQYENLDIFTYDESMLEEKVKDLNFFKNLDVIEPKNPQFQYTDGKYIVLEEVKGNKLNYEKTVKAIKSAIEHGNKVVDLNTTGCYERPKYTKDSEKVKEVKDIIDKYVYSKIVYSFDELMETVDGSIINKWIDIDDDMNPSINEKKVKEYIDSLCEKYNTVGKERKFDSSIGKTVIVKGGYYGWKINSNEEVKALIENIKHGQSVFKEPIYSQKGLSRSDDDIGDTYVEVNITRQHLWFYKNGKLLTQGDIVTGCQSKNTPTAEGVYALNYKQKDATLKGDGYSSKVSYWMPFNGNIGLHDARWRSSFGGNIYKTNGTHGCVNMPQYLAKIIFENIESNTPIICYSEDTKNNN
>NZ_AP019716.1|WP_035761876.1|2095959_2096562_+|LysM-peptidoglycan-binding-domain-containing-protein
MKKYYYLFLFTALISILLLSCQFIPSLKSNKSISPNNNSFDIHSNDANQNSDSNNNYENSNNNSDDFVIPCSNAVHITIREFINNQQCSSYLVKENETLNDILMRYNSTCAPNASLKLIKELNNITSTNDVKAGTTLKIPETTMKNGSIYTISQGDTWSKICEKYYPVYDIDSIMKLLIFINDYKNDILPLGDTIFLPKI
>NZ_AP019716.1|WP_002580027.1|2095198_2095696_-|hypothetical-protein
MFEFNIGDKVVYPNQGVGVIDLIEEKEFKGKKEKYYKIHLINNTMKLSLPLSRVKSANMRHISDSKTLDSKLNNIKYYVKEVDKLAKTNYKERNEIYSTKVKSGTLEDLLEIISNLTELKTIHDLNSMEKTILRNTKRILIDEIAQSKKISLDEAGYLLDIFMNS
>NZ_AP019716.1|WP_035761877.1|2094134_2095061_-|LD-carboxypeptidase
MIRPKPLKKGDTIGIIGTCSPPKKERIDPAIKWIKSLGLEVVIGRSVNENHGYLCGEDKVRADDLNYMFHNKDIKGIFIVRGGYGAARILNMIDYDNIKKNPKILAGYSDVTALHIAINQKCKMITFHTPMPCTEFYTDIDDYTVESFKDSIFKINYTKKVVNPDKCKSFEGLVKGNACGRITGGNLSIIASLMGTPYEINTKNKILFLEDIDESPYKIDRMLTQLRLANKFKDAAGIILGSWTGCDAKDTSRSLSLNEVFNEIIIPEKRPTIMNIACGHTLPTMSIPLGSNISINADSLEILNIDKD
>NZ_AP019716.1|WP_002580029.1|2093169_2094090_+|DMT-family-transporter
MNNYKGIIYAILSSIAFGIMPIFAKIAYKNGSNPTSSLLFRFLISGLILLLYLNFKKVSIKISVKQFLLLFFIGMFGYTITTITLFVSYNYLDSGLATALHYIYPALVCIFSFILYKENITKEKIFSLVLSIIGVYSLIAFESKTLNILGILLALFSGLAYALNVISLSFKSIKSIDNRVVTMYICFGASLGMIIYGAFTESLTFTINLEMMISYLGLSIISTIASMLFLLKAIKLIGSTSASILATFEAVVSIIMGIIFLNEKLTFALILGTSLIIISTTILAREKSPKPCDQYNKLSNAIDINH
>NZ_AP019716.1|WP_003411944.1|2092397_2093009_+|hypothetical-protein
MNFLSALLLSTAINIDTLKISFSSKNDSSVPLNLKILFASIFTTFITFLAFCFGKIIDIYFTHSLSNIFGSVLLGFVGVYYLIEHIRIQKDNDGYDTSFYVNNFKKHKNLIELNNPYIYSDSFKNLFNISIALSLNNILPSIAGSLTNINLPLTILFNFLICIFFYIAGNFIYNKKFIKYIKTNHYLITSILLIILSVFESFH
>NZ_AP019716.1|WP_003411938.1|2090353_2092021_-|2-isopropylmalate-synthase
MLNYKKYKRFETIKLKDRTWPDNEITKAPIWCSVDLRDGNQALINPMTVEEKIEFFNLLVKLGFKEIEIGFPSASQIEYDFLRRLVDENLIPDDVMVQVLTQARPHLIKRTFESLKNVKKAIVHIYNSTSVLQRDVVFNMSKEEIKEIAVEGTKLVKEYAKDFEGEILLEYSPESFTGTEVDYALDVCEAVMDTWEASKDNKVIINLPATVEMDTPNVFADQIEWMCRNFKDRERVILSVHPHNDRGTGVADSELALLAGADRIEGTLFGNGERTGNVDVLNIAYNMFSHGVNPQLDIENINEIIEVYERCVKIPVHVRHPYAGNLVFTAFSGSHQDAINKGMKKYNERHGNIWEVPYLPIDPSDLGREYEALVRINSQSGKGGVAFVMDHCYGFKLPKTMQKEFADIIQKMSEVKGEISPSEVMDAFTKEYLDLDVPFKLLKCTFTDISEMDGSEDTKADVIVVYNGEQRVLEGIGNGPIDSFKKALAESSLINVKIIDYTEHAMSTGSEAKAASYVYMERLDNKKKTFGVGTDSNITRASIKSMMSAINRLYK
>NZ_AP019716.1|WP_035761879.1|2089189_2090251_-|histidinol-phosphate-transaminase
MSIYWNDHVKTLEPYVPGEQPKDKKYIKLNTNENPYGPSPKVIDAIKNAVCDDLKLYPDPTCSNLSMEIAKYYHINDDEIFIGNGSDEILAFVFMTFFQKDRKVLFPDISYTFYNVYAEMFNVNYEHIKLDDKFNIPLEGFYKDNGGIIFPNPNAPTGKYIETNKIIEVLEKNKNSVVIVDEAYIDFGGKSMVEYIETYPNLLVIQTFSKSRSLAGLRVGFAIGNSQLIEGLNRVKNSFNSYTIDRLALIGAAEAIKDKNYFDVTTKKIIRTREDTVKKLENLNFEILDSKANFIFVKHKEFSGKYLYEKLKENGVLVRHFNKERIENYLRITIGTDEEMSLLITNLKKILKY
>NZ_AP019716.1|WP_002580033.1|2087512_2089045_-|leucine-rich-repeat-domain-containing-protein
MTYKKNRLLALGIITIGLSFISTNANAEIKKTEVYEETMQNEKLLANDTSIKEKTQSDYKIKRNWLTEEVASQLNKDFKDLTTEDFEHIIKIDFRYKKIDDTIPDEIALLKNLQYLDLNYCRLYGDIPEEIANMTNLTHLDLGDNKLGKLPESLEKKIIDGDYPYCDVEGNQLRLEKGWHLLKGNWTYIDRYGERLTGVQTIDKVTYDFGEQGFIKEGWEQVDNIWHYYDRVSGMIKNDWKLINSKWYYFNADGIMVTGLQNIQGTKFCFAPSGEMLTGFQNIGGYNYSFCESGGMQYGLVNVNGKQYYFDETTGIMATNTEKVINGKKYIFAADGSGSIKSNVWIDNYTYIQANGQTVNTYYDYSHSNTNYQLFKYMTDLGNQISVDRTAVALHGGITSNNCVYFASEALRRVGVGIPTSTCNTYELENELKYMGFVPCYDLSQLKPGDIVFTNNYSHVYIFMCWDTDGYAYIVDNQSYNFDNKVLHKRQVYQDTSITDRATHFYYYPN
>NZ_AP019716.1|WP_035761881.1|2086273_2087323_-|M42-family-metallopeptidase
MNINVNKEYLLNTLKEILQENSPTGFCFEIIDKIETIVSGFGYSFERNNKGCGIITIEGKENSKTIGLSAHVDTLGCMVRSITESGKLKFTLLGGPLVPTLDGEYCNIRTREGKIYSGTFLSTSPAAHVFEDAKSKKRDPENMEIRIDEVVSSKKDVIDLGIRPGDFVFIDPKPVITESGFVKSRFIDDKGSVACLLTILEMFKKNNVIPDYTTKIIISTYEEVGHGASSIPKDITEMISVDMGCIGDDLSCSEYDVSICAKDSGGPYDYNMVTDLVNLAEANKLNYAVDIYPFYGSDVGVALRGGNDIRGALIGPGVSASHGMERTHYKALENTVKLIYHYLTKETLR
>NZ_AP019716.1|WP_002580023.1|2099333_2100704_+|hypothetical-protein
MNSKYTDLFHELIQAYYDGNFDETLSRIMVCHESSPQETFKIITSLCGVNIEFDNNYIYNLKKAITMYSVNKRIVEKLECSGVNCIKSKDDKFTCEAACPFNAIKYDTTNKTTYISKDICINCGICVDSCKGGRILDKVEFIPVMNLIKENKTVIAAVAPAINGQFGDNVTMDMLREAFIKIGFSDMIEVAFAADILSIKEACEFDKHVNKDGDLMITSCCCPMWVGMLKKVYTSLVKDLSPSISPMIAAGRIIKKINPDAKVVFIGPCIAKKAEAKENDLKDVIDFVLTFAELDEIFKALKIDLSSLKGIPSKDYTSRGGRMYARSGGVSTAVSDIIEELYPDKFKSFKSSTASGVKECKEILEKALNKELDSNFIEGMGCKGGCVGGPKTLIPLEKGKQQVDNFAFDSPIKVPLHSETLDNILKEIGINSIDDFKDKQKMSLFERDFNSNNVKK
>NZ_AP019716.1|WP_051119247.1|2100773_2104001_-|sensor-histidine-kinase
MIIINKLKNTILKISVIFFILNLFTSISVVKAEAYSNIVFKNITIEDGLAQATVECMIQDSRGYMWFGTNDGLSRYNGHEFEVYRNEIGVDNSIVNNYIVCMNEDRDGNLWIGTIDGASKINLSTNEITNYKNSSGLSNNNITEILVTKDGEILLATIDGLNIYDKTNDRFTRIFNNEHLKDQEIYSLDEDINGDIWLGGSKNITKINLKNNTCEDFSDINKEYEKINDCAYKVLCDDKYIWVGTISNGLYKINIETSQIETINLSNSKISSNNIHTIMKDKNGIMWIGTDSGLVKYDSKNDEYNTYVNKAYDKYSLVDDYVYSVIQDRSGLIWVGTYAGVSMFEPENKIEHYKVDPLSHSSINENLIHGIYEDDDGLIWIGTNTKGVNVLDRKNENIYDISEFTNGTALSSNSINDISGHANKIFIATNNGLNIYDKNTRKISVYNEKQGLNAKKIRNITYDDSGVLWIGTTNGINILNLETDEITDLNYILDKYSLDDRYSECIFKDSEGFYWLGSFLNGGLIKIDPYNNTAIQYKHEGKDGDLSNNTVRTIIEDDEKNIWVGTSGGLNKLDKETGKFKTYTTSDGLANNNIYGIVIDGTGNLWMSTNLGISKLDREKDRFFNLNITDGLQSNEFNGHSYGKLKSGELIFGGINGLNIFNPDEILNNMYIPRVEFDRFRVNGRTIDTLQDAKLNYNENTIGIKFFLPDYKNIKNIQYYYSLEGAGNDWSLVNTNELVLSNLGSGTYIFRVKARNSSGIFSEESSFKFTIKPPFWRSAEFILIYILIGVSLVVLIVKSKNTKMRLLDDMVSKRTRELSDEMEKNTELLNKIINLEKRKNAYLVNISHDLRTPLNVLSSIHQLINQLNKSESGIEREKLDYYMNIFGKNVDRLLKLINDLIDSSKIEHGNYHINIGKHNIVYIVEDTALSLKDYVESKNIELIIDPEVEECFIECDSNEIERCIINLVNNAAKFTDEGGRILVSVVELENEVKIMVSDTGIGIDEKHLETVFDRFNQVIDSNKETKGGSGLGLTITKLIVGLHNGRIFAESEINVGSKFTIILPKKQPKEKVEKI
>NZ_AP019716.1|WP_003427720.1|2104320_2106357_-|penicillin-binding-transpeptidase-domain-containing-protein
MEKKKNLYMLVGVLIVVVPLVICTIIYMGYSYTHKPENKWQEYTELLQNKEYDKMYDLIDSTAQAKISREDFVARNKNIYEGIEAKDINITIKSISKEDNDTLINYNTKMDTIAGELEFDNSVKIASELGKGHTIKWTSKNIFPDLGENDKVRVKTLKGRRGNITDRNGQLIATDSYLSNVGVVPGKLGDNKEESIAKIANILKCSTETINKALSANYITDDMFVPIKDIPYGDAKVVDLLKVPGVMIKEKDSRVYPLGRDTAHITGYVQSINGDELEQNKDKDYTENSLIGKAGLEKMYEDFLRGIDGAEIYIQNSEGEKKSVVLSKDARNGEDLKLTIDINVQKKVNEELGSDKGCAVVMNPENGEVLALSSTPSYDPNDFILGMSQENWNTLNNNEDKPLFNRFQATSVPGSALKPIIAAIGVDSGSVKPDQVRKISGLAWQKDESFGNYYVTRTSNIEEVNLENALVYSDNIYFAQIAMDMGSNLIEEKLKSFGFGEKIPFEFALYNSQYSNDGKIKEGAQLADTGYGQGEVMVNPVHLTSMYSMFLNQGNIIEPHLVIDNKNNNIIWKKSVVSKESAQIVLNDLIQIVENPAGTGHEAYNSKLKIAGKTGTAEIKNSQTDTSGTELGWFVGMTTEGDNKVLVTMMIEDVKGRGGSHYVVPKVKDVIESVSLKQ
>NZ_AP019716.1|WP_003427727.1|2106517_2106781_-|late-competence-development-ComFB-family-protein
MKKITNCMEISVKECLDKLIEESNGCKCEKCRYDMMAIALNNLKPYYVTTHLGEVITKIKNMEQQSEANIVVEVTKAIKKVHMSPKH
>NZ_AP019716.1|WP_002580019.1|2106936_2108253_-|[cytidine(C)-cytidine(C)-adenosine-(A)]-adding-enzyme
MNYKLKIPSDVQYIINVLIENGYEGYMVGGCVRDLLINREPNDYDITTNAKPEIVARLFDKVILTGLKHGTVTVIINKVQYEVTTYREDGEYKDSRHPENVKFVTDIKNDLSRRDFTINAMAYNKEKGLIDYFDGLSDLKNKVIRTVGNPEKRFTEDSLRMLRAVRFAVQLDFKIEEAIIQSIKILNNNLEFISKERIREEFNKIILNNPNGLKLLHECSILKYIADDLDKAYDYYINDKIKCYNLYEHLILSSCNIKKDLSLRLTMLFHDLGKLKDWNNKLEKVDNIFIESACMAEKILRSLKYDNGTIKKVKTLITYMHSDLEDKVSIKKLLNIIDVELFEDLIKVKKAHIMSENIEEVKFLNIEKLYCDILEKNECFRIRDMKINGEDIIKIGVKKGKDVGTMLNYLLCKVIEDNNLNYKKKLLELAEDKLSMNI
>NZ_AP019716.1|WP_002580018.1|2108342_2109239_-|MurR/RpiR-family-transcriptional-regulator
MEELNNENSKDLMRLIQGKFIRLSKGQKLIAEYILKNYDKAAFMTAAKLGNAVGVSESTVVRFAIEVGFSGYPKLQKALQELIKNKLTTVQRLELRNDYFSDGDALKGVLKADMENIRATLEKINQNTFQDVVQHIFEAKRIYIIGLRSSTALAEFLGFYLNIILQNVKVVSYGISDVFEQMINVGEGDLVIGIGFPRYAAKTIDALEFSQDRGAKVVALTDSLLSPLATKADYTLIAQSNMASFVDSLVAPLSVINALIIAVGMREKENISNVFSNLELIWKNYNVYSINNKNVADD
>NZ_AP019716.1|WP_035761873.1|2109407_2110124_-|rRNA-pseudouridine-synthase
MEERLQKFMASCGIASRRKCEELILLGKVKVNGNIIEELGFKVNPLEDIVEYDGRVITKEERKVYIMLNKPEDVITSVKDEKDRKTVIDIVKVNERIFPIGRLDYDSSGLILLTNDGELYNKIIHPRVELDKKYVAVVKGEVSLDDKEKFESGIDIGGYITAPAKLKMLEYSHRKDLSTIEVCIHEGKNRQIRKMCSAINHEVMSLKRVSIGNIRLGQLKKGEYRYLNDEEMKYLMSL
>NZ_AP019716.1|WP_035761872.1|2110295_2111744_-|TrkH-family-potassium-uptake-protein
MNYKAVLSILGNVVKYMVALLFVPLLIALYYGEGDAKSFLLTILIGAPIGFILSNIKAEKKAIYAKEGFLIVGFAWIIISAIGALPFVISGAIPSFIDAFFETVSGFTTTGATILTAIEGIPKGILFWRSFTHWIGGMGFLIFMLALIPSLGSNSIHLLKAESPGPSPGKIVPKIKETAKILYLIYFALTLIEGILLMCAGMNLYDAVIHAMGTAGTGGFSNMNASIAAFNSPAIEWIITIFMLIFGINFALYFQILKGNFKGFFKNEELRYYLLIIVSAFILITVNIISLNGGDIILSIRQSAFQVSSIVTSTGFATVDFNFWPTLSKLIIVMLMFVGAMAGSTGGGIKTVRIVIMLKAIKREINKIIHPKRVNSVKIDGKTVDEDIIHGVFLFIGAYIIISLIAIFIISFDNFDVVTTVTSVITTMSNIGPGLEVVGPAGNFAAFSPLSKLVLSFCMLAGRLEIYPMLIMFSPSIWRKNH
>NZ_AP019716.1|WP_002580015.1|2111733_2113113_-|Trk-system-potassium-transporter-TrkA
MMNIIIVGAGKVGYAIAKNLSTGNDNVTIIDNKMTALERINNNLDVMCVKGNCTSLKVLNEAGIEEADLLISVTNSDELNMLCSLAGKKLGAKHTVARVRNPGYDEDITLLTEAVGIDLVINPEKAAAGEISKLIKYPSVCSIDNFANGRVNMVGFDITEDTGLENKKISELGYLRGNVLFCGIERNGEMIVPKGDYIFEKDDHVYVIGEHKDIQEIFKKFGKYRRKVRSSMIIGGGRIGYYLTKIVSEAGVHCKLIENDFNKCEELAELIPNSVIINGDGLDQELLLSESLEEADSFITLTGRDEDNLIASLFAAKNGVKNIITKVTRDNYNEIAKTIGINSTINPKSVTANKIIKYVRTLKNRKKCPIENVYKICNEKAEAIEFIVKENAQYINIKIKNLNFKYDSLIATIVRENKTIIPSGDDILKPGDRVVVVTKDTNLLSLSGIFVGGGKNNEL
>NZ_AP019716.1|WP_024040156.1|2113384_2113969_+|serine/threonine-protein-kinase
MRYILDIKECEFLGKGHEGSVYLTPEGYALKIFLKKKKAKEEVSILELVKTSKFFPKVIFIAGNMILREYVDGVTLFEHLKKNGISYKLSCEIIDLIEDFKKMKFKRLNIRNAHIFVDKNENIKVIDPRKIFTKNTPYPKDIIKILVNLNIFDDFLKNVAQYRSDLLQYYVDAYNYYVYMSKKSMHIDMHAEIC

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Crispr_ID: NZ_AP019716_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019716_3

3362367-3362452

Orphan

Consensus_repeat	Method
TCTTTCCCAAGATAATATTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019716_3

>merge|NZ_AP019716|3|3362367-3362452|CRISPRCasFinder
TCTTTCCCAAGATAATATTTAAATATTAATCTAAAAATTCATTATTATTCTTCTTAGATTCTTTCTTTCCCAAGATAATATTTAAA

>NZ_AP019716|3|3|3362367-3362452|CRISPRCasFinder
TCTTTCCCAAGATAATATTTAAA	TATTAATCTAAAAATTCATTATTATTCTTCTTAGATTCTT
TCTTTCCCAAGATAATATTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019716.1\|WP_035763256.1\|3353419_3354316_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_AP019716.1\|WP_035763270.1\|3369107_3369434_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019716.1\|WP_035763254.1\|3351956_3353387_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NZ_AP019716.1\|WP_035763262.1\|3359819_3360215_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019716.1\|WP_002579061.1\|3355258_3356557_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_AP019716.1\|WP_002579048.1\|3369818_3371231_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_AP019716.1\|WP_035763272.1\|3371672_3373166_+\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035763259.1\|3357974_3359402_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NZ_AP019716.1\|WP_024039349.1\|3356941_3357679_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_AP019716.1\|WP_002579051.1\|3367086_3367425_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_AP019716.1\|WP_035763264.1\|3360507_3362268_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|237053
NZ_AP019716.1\|WP_002579063.1\|3354398_3354707_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_AP019716.1\|WP_003424001.1\|3365308_3365938_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223564
NZ_AP019716.1\|WP_003408009.1\|3364037_3365165_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_AP019716.1\|WP_035763267.1\|3366124_3366847_-\|MEDS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379605
NZ_AP019716.1\|WP_035763260.1\|3359482_3359818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019716.1\|WP_002579062.1\|3354763_3355087_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_AP019716.1\|WP_035763275.1\|3373259_3375362_-\|Cache-3/Cache-2-fusion-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_AP019716.1\|WP_035763266.1\|3362454_3364038_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270327
NZ_AP019716.1\|WP_035763269.1\|3367469_3369047_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083

Protein	Function_ID	Function_description	E-value
NZ_AP019716.1\|WP_035763256.1\|3353419_3354316_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	7.12243e-40
NZ_AP019716.1\|WP_035763272.1\|3371672_3373166_+\|leucine-rich-repeat-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.84038e-37
NZ_AP019716.1\|WP_035763254.1\|3351956_3353387_-\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_AP019716.1\|WP_002579061.1\|3355258_3356557_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	6.05697e-144
NZ_AP019716.1\|WP_002579048.1\|3369818_3371231_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_AP019716.1\|WP_035763259.1\|3357974_3359402_-\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_AP019716.1\|WP_035763264.1\|3360507_3362268_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|237053	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_AP019716.1\|WP_024039349.1\|3356941_3357679_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.04076e-54
NZ_AP019716.1\|WP_002579063.1\|3354398_3354707_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	5.08935e-44
NZ_AP019716.1\|WP_002579051.1\|3367086_3367425_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.17872e-38
NZ_AP019716.1\|WP_003424001.1\|3365308_3365938_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|223564	COG0490, COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism].	6.48455e-21
NZ_AP019716.1\|WP_002579062.1\|3354763_3355087_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	2.45117e-36
NZ_AP019716.1\|WP_035763267.1\|3366124_3366847_-\|MEDS-domain-containing-protein	gnl\|CDD\|379605	pfam14417, MEDS, MEDS: MEthanogen/methylotroph, DcmR Sensory domain. MEDS is prototyped by DcmR and is likely to function with the PocR domain in certain organisms in sensing hydrocarbon derivatives. The MEDS domain occurs fused to Histidine Kinase and as stand-alone version. Sequence analysis shows that it is a catalytically inactive version of the P-loop NTPase domain of the RecA superfamily.	1.4279e-21
NZ_AP019716.1\|WP_003408009.1\|3364037_3365165_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.18689e-145
NZ_AP019716.1\|WP_035763275.1\|3373259_3375362_-\|Cache-3/Cache-2-fusion-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.74096e-61
NZ_AP019716.1\|WP_035763266.1\|3362454_3364038_-\|ABC-transporter-permease-subunit	gnl\|CDD\|270327	cd13609, PBP2_Opu_like_1, Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold. This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.03917e-158
NZ_AP019716.1\|WP_035763269.1\|3367469_3369047_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	2.97885e-117

>NZ_AP019716.1|WP_035763264.1|3360507_3362268_+|1-deoxy-D-xylulose-5-phosphate-synthase
MYLEKINSPEDVKNLSINEMNELSSEIRQVLLKKLSEHGGHIGPNLGIVELTVALHHVFNSPQDKIVYDVSHQSYIHKMLTGRRDAFINSEKYDDVSGYTNPHESEHDFFNIGHTSTSVSLACGLAKARDLKDEKDNIIAIIGDGSLSGGEAFEGLNNAAEAGTNMIIIVNDNDMSIAENHGGLYKNLKELRDTNGKSECNFFKSMGLDYYYVNDGHDFDQLISVFNKVKDTDHPVVIHIHTIKGKGFELAETNKEQWHWGMPFVLETGDSKFPMGDAEDYGDLTAKYLLNEMKQDPTVAVITSGTPGVLGFSPKRRAEAGRQFIDVGIAEEHAVALASGMAANGGKPVYGVYSTFLQRTYDQISQDLCINNNPAVILVTLASVYGMNDVTHLGLYDIGMMSNIPNLVYLAPTCKEEYFAMLKWSMNQQDHPVAIRIPAMGVINSGNEDNTDYSELNKYQVTKQGKDVAVIALGDFYQLGQSLVEKLSSENGIEATLINPKYITGLDEELLETLKKEHKLVITLEDGILEGGFGERIARHYGSSDVKVLNYGIKKEFLDRYVPDELMKKNRITPEQMAEDIMNILK
>NZ_AP019716.1|WP_035763262.1|3359819_3360215_-|hypothetical-protein
MNFIRGWGDETSMKSFLKSTLGFGIAAIILNTLWGVITRRLGLKGGWICGFILTGTLWYVNHYLGIVENRKESAFIDMGFAVAICSFSRDFLKNGLEGIVTSAPTFICVIIGGTIAGVVAGIIKRHQKQGE
>NZ_AP019716.1|WP_035763260.1|3359482_3359818_-|hypothetical-protein
MNSFGAFTTIFGSAIFSFGVIMYWDKFVSLLGAFGGFIAAMLIPGTMWILNHGAENHLIKQSGSIWIDMAWAVGIGVLISSIMQGGSLRNSKWIMLSAIIGGFIGGFLINM
>NZ_AP019716.1|WP_035763259.1|3357974_3359402_-|6-phospho-beta-glucosidase
MAFNKDFLWGGAVAAHQLEGGWNEGGKGPSTADVMTAGAHGVPREITDGVIEGLNYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWSRIFPNGDELEPNEEGLKFYDDMFDELLKYNIEPVITLSHFEIPYGIVKNYGGWRNRKVIDMFVRYATAVMERYKDKVKYWMTFNEINNQKQIGVDIFPWTCSGIIYEEGDNREEIMYQAAHHELVASALVVKKGHEINPDFKIGCMVSFVPIYPYSCNPDDMMLQVEAMHDRYFFSDVHARGHYGAYAIKEWERKGYNIKMEPEDAQILKEGTVDYIGFSYYMSNAVKSDAQNTEDLLSGHSASVKNPYVKASDWGWQIDPVGLRYSLNTLYERYELPLFIVENGFGAIDVKEEDGSCNDDYRIEYLKAHIQEMEKAIEVDGVDLMGYTPWGCIDLVSFTTGEMKKRYGFIYVDKDNDGNGTLNRSKKKSFDWYKNVIATNGEEL
>NZ_AP019716.1|WP_024039349.1|3356941_3357679_-|MurR/RpiR-family-transcriptional-regulator
MFECDEIKNLNELELSLYEYIMKNSEKVMYMKIRDLANEAHMSTTTVLRFCRKLNCDGFSEFKLKFKMYMDSKEDRKINEDTSFIIDNFKRLASDEFKDKINGLCQLIKEHDNIVFLGGGLSGIVGKYGSRYITSIGKFSIYIDDLYYPMNCENFKRGLVIALSESGETVEIIGAINRFKKEKCTIASITNSENTTIARMSDFNISYYIPEERIGTIDITSHLPPMYILETVGRKLYNEKIRSKK
>NZ_AP019716.1|WP_002579061.1|3355258_3356557_-|PTS-sugar-transporter-subunit-IIC
MSSFLNEKVVPAIMKFVNLKAVVALKDGIIFTLPLTLIGSVFLLLAQIPYKPLADFISSKGWDAPLFQANGATMGIMAMIACVGIAYTYAKNEGYEPLSAGVVAFSIFCLTTNSYVITEDGTKVGSVIPMDWTGGKGMVTAIIIGLIVGAVYSWFMKRDIRIKMPAGVPQGVADSFSALIPAAILITGGTILYSVFKIFDTTFIEFIYKVLQTPLQGMTDSLGGVVVMGLIIPFLWFFGVHGATIIGGIMGPILTSNTLENGAIVTAGKELTLANGAHIVTQQFLDQFMTVTGSGMTIGLVLCMLFLGKSAQFKQLGKLAIVPAVFNINEPVLFGTPIVMNPLMAVPFIAMPVISGLILYFSIYFGIVPPFGGVLVPWTTPPIISGLLVGGVRTALLQTAILVLSFFVYLPFFKKCDNMSYEAEQAAEASSN
>NZ_AP019716.1|WP_002579062.1|3354763_3355087_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MEQLEMQIMNIIINAGDCKNHAYMALSKVNEGQYEEAEKEMVLANDALAKAHDSQTEMLQKEAAGEKVDFSILFVHAQDHLMTAISEKNLIEQIIELRKVVNMLINK
>NZ_AP019716.1|WP_002579063.1|3354398_3354707_-|PTS-sugar-transporter-subunit-IIB
MITIRLFCAAGMSTSLLVNKMKESASKRGLEVDIAAFPEGQMDKHLDGVDVALLGPQVGYRLTNAKAVCGPKKVPIDVIPMVDYGMMNGEKVLDFALKLSGK
>NZ_AP019716.1|WP_035763256.1|3353419_3354316_-|ROK-family-protein
MRYNLGIDIGGTFIKYALVDDKYEIRDKWKVETIKFETKDNFYDYICSNIKSLDLVDKIGISAPGLIDENSNVRSYAAENVVIMYGTNINEEISKRTNRTTSAINDAKSAGLCEFKIGNAKGSKLSAFFIIGTGTGGCICDEKGVVYGKDSFAGEFHHIPHINLDTGKIDRLGDFSSMTGLINIYNQKVDDFNKLRYGHEICNKYLNDDIVAKEAFEEWIRNICVHLITISVFYNPDVICIGGGISEEAWFINLIKNKFKHMSREYIFNKDVITTRIEKCRYNNDANILGAVINVENL
>NZ_AP019716.1|WP_035763254.1|3351956_3353387_-|6-phospho-beta-glucosidase
MAFNEKFLWGGAVAAHQLEGGWNEGGKGPSTADVMTAGAHGVPREITDGVIEGLNYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWSRIFPNGDELEPNEEGLKFYDDMFDELLKYNIEPVITLSHFEIPYGICKKYGGWRNRKVIDMFVRFATTVMERYKDKVKYWMTFNEINNQAETEYDLFAWTCSGVRFEDGENRVEVTYQAVHHELVASALVVKKGHEINPHFKIGCMLAYVPVYPYSCNPQDMMLSVEAMHERYLYGDVHCRGYYPSYALNKWKRDGINIKMEDGDAEILKEGCVDYIGFSYYMSASVKSDIATDEGDGMSGYSRAVKNPYVEASDWGWQIDPVGLRYALNSLYERYQKPLFIVENGFGAVDVKEEDGTCNDDYRIDYLAKHIVQMKKAVELDGVDLMGYTPWGCIDLVSFGTGEMKKRYGFIYVDKDNDGNGTLNRSKKKSFDWYKNVIATNGEEL
>NZ_AP019716.1|WP_035763266.1|3362454_3364038_-|ABC-transporter-permease-subunit
MSDFFMNLYLKKSEVISLLLEHIQLTLLAVLIAVVIGVPLGIFITNYKKLAKIVIGFANLVQAIPSLAILGFLIPVVGIGSVPAIIMVVLYSMLPIIKNTYTGISNINPDMIESAKGVGMTNIQILKIVKIPLAMPMIMAGIRISGVTAVGLMTIAAFVGAGGLGYLVFSGIQTVDNNLILFGAIPAAILALIIDYITSKIEYAVMPNGIRKSDGTMKVKRGNKGKNKKNKIIALVTSLILIIILLFSTNVFNKSSNKIVIASKNFTEQIILGNMLEQLIEAKTDIDVETKLNLGGTQVAYSALKSGSVDLYVEYTGTAYVNLLDIKDGNTNPDEVYDKVNEIFKEKENIEFLDPLGFNNTYALVVRKDTAEKYNLKSISDLKKVSEEFLMGPTIEFANREDGLLGLDKAYNINFKKVKPIDGGLRYTALMNNESDVIDAFTTDGLLDKFGLKVLEDDKNFFPPYYAAPLIRMDTLKEHPELEEVLNLLSHKITDEKMRKLNYEVDVNGRDPKVVANEFLVSEGYIN
>NZ_AP019716.1|WP_003408009.1|3364037_3365165_-|ABC-transporter-ATP-binding-protein
MIEFKNIKKSYKSKIILENFNLSIDSGKLVVLIGASGCGKTTLLKMINRLISITEGEILINGKDINKMDPIKLRRGIGYVIQQTGLFPHMTVKENIEIIPRLMKISERKIEKKTIELLNMVGLDPNEYLYRYPAELSGGQQQRVGVARAFATDAEIILMDEPFSALDPITRTELQEQLFNIQKEYNKTIVFVTHDMDEAINIADMICILKDGKIIQYDTPENILKNPENDYVEEFVGKNKIWAKPEFIKAEDVMINRPATVSIKRSLLQAREIMREKTVDSLLIVDKEGMLLGYVTLSDIQKIDNKSILVGEVMRRSPEYVTEDTNLLDLLEKFTGLKRGYLPVCNENGKLMGLVTRSTLISVLSSQYIDIGGDN
>NZ_AP019716.1|WP_003424001.1|3365308_3365938_+|GntR-family-transcriptional-regulator
MNNSSIPTYKKIALDIANKIQLNNILEGDILHGRSTLSSKYNVSPETIRRSMILLEDVEVVKTIKGKGILVLSREKAISFLNRNKSIDSIRSYKTEIDKLLNNRKEIENQLLKSIQGIIDYSSRFNEVNNIIPLEFVVPENCLYIGKTVGEIMFWQNTGATLIAVKRNDELLLSPGPYISLNPNDVLIVVGNDNIRNSVPQFLYPKNNL
>NZ_AP019716.1|WP_035763267.1|3366124_3366847_-|MEDS-domain-containing-protein
MREICDNCKINNRIEEYKEKLNSSIENRNGDLLDDEVVLSSQFLDNFVYKCVCCNKNIKHLSKLNLREVFGTHTTFYYYGEQHLLVNLYFYINEGIKNNELIYISMEEELYNKLLDFLISNNVSTENIKFKNVKELILGHKKGGFNGLVETAMGILGSSNMEKYNGLRWIGQPSFAIKGTSENDFLEMEEDLNKFIKNMNAALLCIYDAYDYMHKGKIINKKVIEESFKTHSFVLNNYVS
>NZ_AP019716.1|WP_002579051.1|3367086_3367425_-|P-II-family-nitrogen-regulator
MKKLEIVINSEKLEDLKKILSDCNANGVMISNVMGYGNQKGYKTIYRGTEYSVNLLPKVKVETVVPADVAEKIIDKVLKEISTGNYGDGKIFIYDADDIVRIRTGERGKDAL
>NZ_AP019716.1|WP_035763269.1|3367469_3369047_-|ammonium-transporter
MKKSLKLLGIILFLGVLALTFALAISPTSGSDPTGAAYIATTGNETITDVATTANKAYYGANYVWVMITGFMVFFFQCGFAMVETGFCRGKNAAHTMTMNFMVFLVGAIGYFLTGFAIQFGGSGGAAGLGTGGSALNAMLSIPGLGGILGYKGFMLSGNGIYDPGIFALFFFQMVFMDTTVTIPTGALAERVKYSAVIILSFFISMFLYPLFGNWVWGGGFLATLGQNFGLGHGVVDFAGSAVVHSMGGMIALSSAIVIGPRIGKFKKDGTARPFPGHDIPMAIIGTIILFFCWFSFNAGSTLNSSDFRLAVVATNTMIAGAIGGLVAMFYMWIKYGKPDPSMTANGALAGLVAITAPCAFVNGPCAFFIGGVAGYLVCISVAFVENKLKLDDPVGAISVHCVNGVWGVIALGLFADGAYGDGINGVAGGVRGLFYGDPSQLVAQLIAVAVLVIWGFGVSYIFLKVLDKVWGLRVKPEEELAGLDIPEMGVSAYPDIQLIKSPELDYYSADNIEIKQIKRFKEKV
>NZ_AP019716.1|WP_035763270.1|3369107_3369434_-|hypothetical-protein
MKFINSNDDSILSKKIAVYFLQCVSLMIVFLGMFFSIFSAINHISIKVLRVNVSGIVFGVLVFYLGIKYYLSVCNLKEKLLKDKYKFSWSNFNLQKGRKISSFIKGKF
>NZ_AP019716.1|WP_002579048.1|3369818_3371231_-|glycoside-hydrolase-family-1-protein
MFHKKLKNFPKDFLWGASTSAYQVEGASLEYGKGPSVQDIKKIPEGTPDFKVSSDHYHHYKEDVALFAEMGFKAYRFSISWARLIPNGVGEINPQGIEFYGNLIDECLKYGIEPIVTMYHFDLPAALQTKGGWSNRETIDAFVNFAKVMFENYGDRVKYWLTINEQNMMTLVGDVIGTLDGIETDNVQKELYKQNHHMLIAQAKAMKLCHDMCPNGKIGPAPNISAVYPASSKPEDILAASNCSAIRNWLYLDMAVHGRYNPTAWNYMVEKGIEPTIEDGDMEALRSGHPDFIAFNYYNTATVEAFPGEITNERSGGDQQSGHGEQGMFKGVSNPNLQKTEFGWEIDPVGFRNTLREVYERYALPLIITENGLGAYDKLEENDTINDDYRINYLRKHIEQAQLAISDGVDLIGYCPWSAIDLISTHEGFKKRYGFIYVNRDEFDLKDLRRIRKKSFFWYQNVIKTNGEEL
>NZ_AP019716.1|WP_035763272.1|3371672_3373166_+|leucine-rich-repeat-protein
MLRLSRKLSKLILIAMSINIINTTNVFATENNSNITISNGIATISSNVTEIDSSTFSENNNITKVIIPSNVKKIGEGCFSNFKNLKEVIIEDGVKEIGSNAFIGCENLEKINIPSSITVVGDFAFIGCSKLKDVDFQSKTTNIGGSTFLYTAWLDKMRDDNGLVIINNSVISGKNTSASLTIPDGVKIINSHAFEGCNTLKEINIPDSVVEIRDSAFEACSNLSKVKLSNKLETIGENAFRDCKLQSVNIPSTLKSVQLYSFNSDVKITGAVDLYNSLIKPLKTAQEDNLNLLLRNKPYGWGKATESGDKIFYKNSKGELQTGWMDLDGKKYYFYSNGQLATGFIDLNGTKYYFDPSSGNNFGNLIVGWKNINNNWYYFNQSGDGDKVAGFMRTSWLYDDGNWYYMYSDGTMATGFINLDGAYYYLNNSGSMVTGWQYLQNSWYYFNKSDDGGLEGLMKKGWNRINGNWYYFNYSDGKMAHDTWIDGYYVNSSGTCI
>NZ_AP019716.1|WP_035763275.1|3373259_3375362_-|Cache-3/Cache-2-fusion-domain-containing-protein
MKKILNFKFNLKDKTSIKRRLLTTLLPIVIVGLLILTMCTFIGVNVYVKNDLIGLMAEKQDEAVNNIDSWIQTRLAEVQESSYNTELRKMASDYEDVDLHNEEITNKIDEINTARWNFVNSKYPNEYAAIHVLSAIDKNQWKDSSNADKLLARYYNVSAGKNATSPWASGIVAEAFEKYSATGEPYDTIFRPTYSEAYKSNVVMMFSWVKDYMNNINLGVAASIKIETVEKKVSDLKYGDKGYSMLIGNDGTFIVHPNADYILKTKINDLNDKEMINLSNAMSSQDKGTVKLGHGLNKKIAFYEKVESTGWTVVNVVYERELFKVLNIIILLISLISVALIVAISMAIYKNVTKVLMPLDDISLFADKVAQGNLSDTIEINTDDEIGKVAKAFNITVENLRNYILEIDKTLNSIAEGNLDVSLENEYKGDFIGIKNSLVNIISSMNEVFREIGEATSQVKGGSEQIASTSQTISQGAADQASGIEELTASINEINEKVQKSTGHAKETNVIVENLGLQIKESNDKMESMLMAMDEMEVASKNIKEVIITIDNIAEQTNLLALNAAIEAARAGEAGKGFAVVAEEVRKLAEESSNAVKNTAELIEASIKSVEGGKYIADTTAQSLKEVVENTKNAIELVDNITRASEEQSVAIQQVNGGIDQIADVVQSNLAIAEESAAASEELSAQAETLESMISKFKLK

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Crispr_ID: NZ_AP019716_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019716_4

3417577-3417665

Orphan

Consensus_repeat	Method
TGTTAATATTATTACATTTGTAGTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019716_4

>merge|NZ_AP019716|4|3417577-3417665|CRISPRCasFinder
TGTTAATATTATTACATTTGTAGTTATCTAGTAATTATGGTCTTTTAATTCAAAATTTTGCTTTGTTAATATTATTACATTTGTAGTTA

>NZ_AP019716|4|4|3417577-3417665|CRISPRCasFinder
TGTTAATATTATTACATTTGTAGTTA	TCTAGTAATTATGGTCTTTTAATTCAAAATTTTGCTT
TGTTAATATTATTACATTTGTAGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019716.1\|WP_035761371.1\|3435865_3437869_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|213222
NZ_AP019716.1\|WP_035763296.1\|3400589_3402440_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270700
NZ_AP019716.1\|WP_141912248.1\|3423655_3424648_-\|IS1-family-transposase	unknown	unknown	gnl\|CDD\|226202
NZ_AP019716.1\|WP_035765567.1\|3421419_3423063_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035765565.1\|3417774_3420780_-\|Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_002582347.1\|3413877_3415473_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_AP019716.1\|WP_035761370.1\|3437865_3438372_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939
NZ_AP019716.1\|WP_141912245.1\|3403030_3404023_-\|IS1-family-transposase	unknown	unknown	gnl\|CDD\|226202
NZ_AP019716.1\|WP_003407822.1\|3399700_3400399_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227093
NZ_AP019716.1\|WP_002582343.1\|3404511_3407583_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035763292.1\|3398698_3399400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019716.1\|WP_035761374.1\|3427875_3428853_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380478
NZ_AP019716.1\|WP_051119391.1\|3411290_3413531_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_AP019716.1\|WP_035761372.1\|3431341_3432856_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_002582345.1\|3408723_3410736_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_AP019716.1\|WP_035765564.1\|3416513_3417563_-\|InlB-B-repeat-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035761373.1\|3428867_3430874_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_AP019716.1\|WP_035761375.1\|3425119_3427357_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_002582356.1\|3433294_3435076_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_027636894.1\|3407983_3408382_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP019716.1\|WP_035761371.1\|3435865_3437869_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.75124e-101
NZ_AP019716.1\|WP_035763296.1\|3400589_3402440_-\|phosphotransferase	gnl\|CDD\|270700	cd05151, ChoK-like, Choline Kinase and similar proteins. This subfamily is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.44437e-49
NZ_AP019716.1\|WP_141912248.1\|3423655_3424648_-\|IS1-family-transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.1747e-08
NZ_AP019716.1\|WP_035765567.1\|3421419_3423063_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.4991e-39
NZ_AP019716.1\|WP_035765565.1\|3417774_3420780_-\|Ig-like-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	7.65293e-25
NZ_AP019716.1\|WP_002582347.1\|3413877_3415473_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_AP019716.1\|WP_035761370.1\|3437865_3438372_-\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	2.4523e-13
NZ_AP019716.1\|WP_141912245.1\|3403030_3404023_-\|IS1-family-transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.55401e-08
NZ_AP019716.1\|WP_003407822.1\|3399700_3400399_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|227093	COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane].	5.44976e-71
NZ_AP019716.1\|WP_002582343.1\|3404511_3407583_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.68577e-19
NZ_AP019716.1\|WP_035761374.1\|3427875_3428853_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	2.01914e-62
NZ_AP019716.1\|WP_051119391.1\|3411290_3413531_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.21162e-60
NZ_AP019716.1\|WP_035761372.1\|3431341_3432856_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.50994e-39
NZ_AP019716.1\|WP_002582345.1\|3408723_3410736_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.9687e-68
NZ_AP019716.1\|WP_035765564.1\|3416513_3417563_-\|InlB-B-repeat-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.62375e-16
NZ_AP019716.1\|WP_035761373.1\|3428867_3430874_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.04471e-48
NZ_AP019716.1\|WP_035761375.1\|3425119_3427357_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	6.34345e-35
NZ_AP019716.1\|WP_002582356.1\|3433294_3435076_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	7.78964e-39

>NZ_AP019716.1|WP_035765564.1|3416513_3417563_-|InlB-B-repeat-containing-protein
MRNKFLNKLIAVSIALTAVTVMIPMKTEAAWINNYYGGFAYSNGYYLSTGWNMINGTWYYFNSLGVMQTGWLNSNGTWYYLDQSGAMQTGVIQVEGKIYLLGPSGGMQTGSNIINGKMYYFGPDGVCMGTDVPTPLKGYDYYGNPVQPYVPSQISNPNAVMDSNIPLENGQKIEEQYRVYYKDDDGDLILTKRIDADTKITLYEPDKAGYEFIEWNTKKNGNGTSYDAGDKVKLTGDLTLYAQWDEVETDDDSDDDTIKVTGITLGAVGYTGTTINISVGDTVQFTRKIAPSTATNTKVTWSVKNGSTGKAEITSTGKLTALQPGTVTVRATATDGSKVFKEMTVIIEN
>NZ_AP019716.1|WP_002582347.1|3413877_3415473_-|peptide-chain-release-factor-3
MADYIKEIEKRRTFAIISHPDAGKTTLTEKFLLYGGAIRLAGSVKARKASKHAVSDWMEIEKQRGISVTSSVMQFNYNDHCINILDTPGHQDFSEDTYRTLMAADSAVMVVDAAKGIEDQTRKLFQVASLREMPIFTFVNKMDREARDPFQLLDDIENELGIKTYPMNWPIGSGKEFKGVYERDNNRIIAFNGGNHGQNEVEAIEGTPDDPKFREILGEALHDKLMEDIELLDIAGDELDLEAVRNGELTPVFFGSALTNFGVEPFLEHFLEMTTAPLARHSSVGDIDPFEDKFSAFVFKIQANMNKAHRDRIAFMRICSGKFNKGEDVYHMQGGKKIKLAQPQQFMAQDREIVEEAYAGDIIGVFDPGIFSIGDTLCAASKKFKFEGIPTFAPEHFARVRPVDTMKRKQFVKGCTQIAQEGAIQVFKEIHIGMEEIIVGVVGVLQFEVLEYRLKNEYNVDIKMDRLDYRYVRWIEDQSIDMDSLNLTSDTKKVKDMKDRNLLIFQNDWGISWALDHNKDLVLSAVGKNDD
>NZ_AP019716.1|WP_051119391.1|3411290_3413531_-|N-acetylmuramoyl-L-alanine-amidase
MILGLVPTLSVQAVTTDFKIISKTEVTAAQAKKWAQSKGATDTFADLAKLYWKYAEECGGVNPGIAYVQAAKETGYGRFGGVLDESYNNPCGMKTSSGGGDYDKEAHQRFNSWDEGVQAHMDHLALYAGADGYPKANTYDPRHFVTIKGRATTTNSLGGKWAPSATYGEEIGKLYMSLMDSAGVTFEKDEDEDLWEDVEDEEDTSAAPNPGTVEKKPADLSIEEAIKLPEKITNDTSGTDSSQGSGNDSPNITSTIGWKNVDGNWYYYKSDETKAFGWIKPDSNWYYLDDADGKMVRGWLKNNNKWYYLDESGAMITGWKLIDSKWYLFDKNGIMTTGVQNDGNSSYYLDKSGAMIEEQGWKKVEDKWIYLEKGGKIKLGWLKENNAWYYLQGDGSMVNGLKRIDGQVYSFYDNGTMQTGWKSVNSNWYYFKSSGEMATGWTYDGDTCYYLYDNGAMAKGWITIGDSWYLLSSSGVMQTGWVTSNGDTYYLDKSTGRMVTNTTVDGYKIGKDGKRKGKVNQGDSNSNNSNSNNSNSNNSQTGPGSTGKVIYVDAGHDYGKDSGAVATINGVTYSETDLNMQVADKLKTSLENRGYTVIMTRNLGERPSFSSLTESLSYRVNKANNANADLFISIHHNSAGETAKGIETLYSEVSQDDAFGGQYDSTRIAKSKSLASEINNNIASSLDLTNRGGKSQNLYVCRNTKMPAVLVEVGFITNAEEAVRCSDPSSQQRVAEAIAAVVSKHY
>NZ_AP019716.1|WP_002582345.1|3408723_3410736_-|N-acetylmuramoyl-L-alanine-amidase
MKIRERLASFFIALFVAFSFIPSMKVMADTVADINIISDTKVTVAQAEKWAKSKGATDTFISLAELYFKYADECGNVNPGIAYVQAAKETGYGKFGGVLDESYHNPCGMKTSSGGGDYDPNAHQKFNSWDEGVQAHLDHLALYAGADGYPKSDTFDPRHFVTIKGKAPTVNSLGGKWAPSTVYGEEVNSLYRDLLKSAGVTIGSEEIPNEDNSGNNSGSNSGSGSNSNGSNNSGTPGGSTNVQPPKDTVEPQGLPVNKPIAITADNSTNISSNIGWKLEGGRWYYYRSDGSKATGWIKPDANWYYLYSDGVMANGWVQLGSSWYYLQSSGAMKLGWFKDGSKWYYLQGNGAMVTGFNSIDGKTYFLDSSGAMRTSWFKISGQWYYFNTDGSMLTGWIRPDGNWYYLFSNGIMASGWLARDGELYCLSESGVMQTGWVYEKGGYYYFHPTSGKMLRDTVVDGWEIGPDGKRGDRVGGGSSKLIVIDPGHNFGGDDGAYGYHSGVTYSERDLNMQVALKLKTKLEAYGYQVVMTRNESDRETLSVSESLAKRVNLANSLNADFFVSLHHNSAGSESANGVETYYSSNASNSNNISISRNMATKINNAIVGKTGQYNRGAKDGNLYVCRNTNMPSVLVELGFVSNPTEAAKCATWTNQDLAASAIAEAIASSI
>NZ_AP019716.1|WP_027636894.1|3407983_3408382_-|hypothetical-protein
MNWFRKFMYGRYGVDELSMVLVGVSIALLLLSSLLPRSLSILSLIAYIPMVIYIFRIFSKNIFKRQQENYKYISFKNSMLSKAKKYKGKIQGAKTHKYFKCPSCGQELRVPKGNGKITITCPKCKTSFKAKS
>NZ_AP019716.1|WP_002582343.1|3404511_3407583_-|cadherin-like-beta-sandwich-domain-containing-protein
MKKIVKRLLALLIVFASMFSFLPLQFGDNGQEANAANDSSVDISYADLSLRVVGGTSILDKKTDDTVGKLPYYNTSDGENTFDLTISDFSKTENQIKEELLKKYPEGGSGETTYVSNAYMNIISLNNIKLATRSGAEIPEGRDALDDLEIKMEKITPSGALNRFGVRFDNMPLGVDRIDYNLLGTVQKIKYTVNKETSTVTLEKSGTYDNVNLSESIDSFIINNGKDFVGKNVESFTLDQYVGKRDLIDSEETKYNNKAPLLYTAEAEADETIKMRYTWEVPDSLTALNYKMKFTMDLFNTHDNTNVYVNGTKGQGQAIDSNTISGFLNDLSNNDQFVVIKTKNGTDIAKSYSAEIRFPKKKTENDFSLIEAGVLKAEYANDSSVKAYIGKKFTETAKTDADGNRYVEYKGTITIDPKARMVCLRPKVVSGVNVEYELYNNYTVNGITKAAKAYELINGQAYIDFNLGDENELELQIKDASTQKLLAKYIYTVKQRDDAEKAFNENFIFDDNNSNTYLTREGSKEKISFKVGKSENRSTFDLYTKDKNEVKITLDPDGITNSNEYFKVWTSDTLDGNNFTEAQASIDNEFDINSGIRDTDLYVDISKAKRIMVQAYYDEVTEKDGVYTLVKSYSLGSKYIFFIPANINSSDTDDNQKSDNAVLSNIKVKGQTLYNLDEDKNGFSIDSRNYRVTVPKDQTTAVLTVVPEDENVKSIVATVSGTDTSYELYPGEETEFMLNSSGITDLEITVTAQNGKKTEVYNLSIINNSKGGSSKLKDLILSSGDFNFDSDVYTTKVQVEQSVNKISITPIAEDSKAKITINGQKFTGKPISVSLAGKQTTEVDIEVESEDGESTTTYTLKIKRVSVISDDDSDNNQGTTEDIYYDYDNDCWVDTTKYDEWGTIKNRVMYFDKRGRQVKDRWIYTGKKWYYLNEAGYRATGWKIDDETGQRYYMDNVTGEMKMGWMNLNGSWYYLGTTGVMHTGWLWLNNNWYYFTENGEMITNQSMVIDGKMYRFATDGRIY
>NZ_AP019716.1|WP_141912245.1|3403030_3404023_-|IS1-family-transposase
MIERDWEFEKIKKYKENALRENIYNKENVKKYKECPYCGSKSFIKYGNYNRIQRYKCKNEECKKTFSNTTNSVWKYLKHKPEKWFEFIELMGEHTTLNECAAKLEISIVTAFYWRHKIFHAIENNYKPEKFDEVVYVDTYYTEKCYKGSRNKNYTYADKVKNKFDKMYGLVPRNVSVLIAEERGKMPLIRRTENDETIVNNFNNNVLKIAAKDCYMRTDYFTNKKLKNNLLQYNKKLSNATKKKYGLKIIGNRIEDKIKEDKKKNIMAYLTAWLSRCKGIATKYINHYYNFYSLIDSEKVFDYMSIFFELLKNGSYTSVNQLRKTHIENY
>NZ_AP019716.1|WP_035763296.1|3400589_3402440_-|phosphotransferase
MLEDRLEILKILNENFNINQRELSKRTNMSLGKVNSVLKEFTEDNFIDRIVNNRGILYKVTDKGMKFLEESIANAKNTRLKLHEEEKKIVKQAVILAAGRAEHFGKPVGLLEIEDFKLIDRTLNILKENGITKIVLVTGYESEQFEEYFKNSRNIKIVKSDIYKWTGTMHSLSLAKEYIDDDFLLIENDLIFEKRAIKELSESPNRDCILFTNESGSGDEAFVEIRDNHLYKMSKDIHQFNRIDGEMIGLTKVSYKLYEMMLEEFKGNVNPYLNYEYVLLDVARNYNIGFVKIDDLAWGDADSIKEYEKIKNYLYPTIRRRELNYEINNIKSIVCEAFKVEDEDITEVTPAGGMTNKNYRICVKGTRYILRVAGTGTEQMINRNTEMFNSAIASEKGFNVEVPYFNLETGVKISKFIENAETLTHRSVKKEENLRQVTKILRDLHESEDFRMDNEFNMFRELEKYEEILRKDEGQFFDDYAQVREKVMALEEELQRCDRVFVPSHNDLVSENLVKDTEGRIYLIDWEYSGINDDMWDLAALSLENEFSEDDIELMFRLYFNGEEPDENSRRRLLIHQICQDTLWAVWTLIKEAEGDDFGTYGIDRYNRAKEYLKKL
>NZ_AP019716.1|WP_003407822.1|3399700_3400399_-|NTP-transferase-domain-containing-protein
MRAILMAAGMGTRLRPLTENTPKSLIEVNGMPLLERQIINLREIGVEEIIVLTGYLHEKFDDIVKKYNLIKVVNDKYDVYNNIYTMYLVRDYLKDAFVIDADNYITRNFLPKVQPKTSVYYSACKENITGEWILKYTETGRIYDVEIAPKNSKASYIMSGASYWTEKDGKIISEKVKKAVEEDKLFDIYWDNIAVENYDNMNVYIEKINSDDIFEIDTLEDLDYLKSKLNNM
>NZ_AP019716.1|WP_035763292.1|3398698_3399400_+|hypothetical-protein
MNVTIIYDNSKDNNSYDHINFLLNNLKLNTPINCTEYFLPTDFSLHCKHYCQCLIGNCDYFNFCSVNKIAKSISDCDLIILACSSLRRCFLPPSLKLLIEHLSYIWMPHKNHIPMADKIGLVISNDYVPLLPSTGRTLKKHLKFWGIKNILKFTSHDSHKIIPNTNLLSKDYINLLALSIKIMNIYSSNHTTSSHSGNIIKFPYSQLISNKKFLSNNNPTDNVIPLKKIQNDL
>NZ_AP019716.1|WP_035765565.1|3417774_3420780_-|Ig-like-domain-containing-protein
MKRDLIKKLICCMAITACISSTMPVDVYAATWMNDNMGNYYFYESNTYAVGWRNIDGTVYYFDASGVMQKGWIKYGDSWYYLDNNGALKTGWINYNGEWYYSNSAGIMQTGILLIDGQTYYFGNNGVMKKGNVIINGQFYTIGVNGAIVSNAVPVPDKVFDRNNNCIKQINSVDSTTIMTPDGSKYDNPIVDQSEDGDYEEPARKFTVTFRDENGQELKTKNITDGDTVKMYEPDDENGKGDEDRNFIEWNTKRDGSGKSYDSDEKVKVTKDLTLYARWEELEEQTLVSSISITGSNEVEIGKTTQLTAEVKPSDATNTKVKWSIVDNADGTASGKASIDQNGVLTGLENGLGKITVKAEAMDKSDVSTTKVITVVEAKNLIESIKINGPDTISEDGAVVKLTADVSPETASNANVSWKITDGSEYAEIDRDTGELKALADGKVTVMASAKDGSGISATKTINITGQSVKATKIQVSGYENVKTVSTGKKLQMVARIYPDNVASANDEVEWSAVYTSGEKIGEQVSINEGTIGVIGDAAGQRLKYAVLNPEYRGKVEVTAKSKSDSSILGKTTITVVKDAESVDIKAIDTSGNDITNKPEITTNAGKLNLKAVLNPSDTTDTSSVKWSMELVNGDGEDTEVSNYVTLTASETSAVIAAKKNGEIKVIATANDSSKAIGEITIKIDGQKIYAKEISLYEDGDESKPINEGYEFNIQKGSSVTVQGKVGPDNATNKNIEWSVLGAKDYVTSKIEGNKLTITANKDLSSEMAAVRIKAVADNIIKEFKINVYENIQGVNISTPSAVVLGQDFKATSTLFPVNVNGDKIKLSVVTKMDDGSLTGSAFINGEVEVSRNTTTATITPVNTGTIKLKALATLNDSEQTYTTGEINILNPIDNIIIEGTNNSFTLENGQTRNANLTAKVNGAPAGGYSSFLKWEIKSQPSNVIAKVDGNTGIVSVTRTGDIAVGSQVIVRVSANYDSTKYSEFIIGVSNAPVVDSTATS
>NZ_AP019716.1|WP_035765567.1|3421419_3423063_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MIKRLKKTSALIVLATTLATIVPVGNTQIRAEAADKYSNEFSNNYNIESLENNISLASEETSEDKQIAGKITQYINGKYPGATVKVQSPKYIKLTITKSIAEKMATQICSSNDTIRQILKNEPNLVKPGASQDEVNKIVDSMTDEQIESVKPKVYNAVYQTILAFDGQSVPVYGYEVVSGDQIEDTGYFVGGKIGALIMQKEGKPLCVSTEFIKDLNNQITNKILEEIKQKISEIIQNSGITEIIDKVLKKVNSVVSDVTDTIEDLSDAIDDLTDSIKDKADDIDDAWDKVFDRFDNDEGWGKKDGYMYYYDKDGISLKGVQKIDGKTYYFNRIDGAMETGWQIVDGKRCYFDEKKGYQLFLQWVQDGEDWYFLSDQGPVKKSEWVNDNGRKYYLKSDGKMTKDWLKIDDDWYYFNGSNGAMEYSTWKYSNDKWYYLNQDGKAANDWTYINENWYYFRENSCSMETGWFRADGSWYYSDSTGAMKTGWIQGDDGWYYLDDTSGKMKKNEWVYSNGSWYYFNINGAMVTKARYIDGVKYNFNSDGRMA
>NZ_AP019716.1|WP_141912248.1|3423655_3424648_-|IS1-family-transposase
MIERDWEFEKIKKYKENALRENIYNKENVKKYKECPYCGSKSFIKYGNYNRIQRYKCKNEECKKTFSNTTNSVWKYLKHKPEKWFEFIELMGEHTTLNECAAKLEISIVTAFYWRHKIFHAIENNYKPEKFDEVVYVDTYYTEKCYKGSRNKNYTYADKVKNKFDKMYGLVPRNVSVLIAEERGKMPLIRRTENDETIVNNFNNNVLKIAAKDCYMRTDYFTNKKLKNNLLQYNKKLSNETKKKYGLKIIGNRIEDKIKEDKKKNIIAYLTAWLSRYKGIATKYINHYYNFYSLIDSEKVFDYMSIFFELLKNGSYTSVEVLRTNHVEDY
>NZ_AP019716.1|WP_035761375.1|3425119_3427357_-|cadherin-like-beta-sandwich-domain-containing-protein
MRAKFNFKRVFAYLLIFAMTFSFVQMGQANPVKAATSGSKEVNDSFKFIIGDASSGTTKDVDMDYSGDLVLRSVTLSQTYTIMPQAGYNIESVKSSSDKMKITKAVSGTTNTFTIGTIKDYSNFKLTVKVKNSSGEINTYDIRVEFNIDSSLEFNKLRITVDNDDPVTLTYTQCDSEGIYYYEESNPEAKKAKIEMFDDSNNAMSFKVNGGTNKTVNLVGGDNTIELTVTSAGYSKVYTLVITKKGVAKLKSLVPSTGSLSPSFNSDTTEYTVTVPTTQETIAFTPTAVDNSSTIKVKKITVASGKKSQDIKLDEGENEIPIVVTNKDGDVTTYKVTVTRTEKFRSANLKSLKLTSGTLSPTFNKGVYQYTTIVENTVSSVGVTPVAEDTNATIEVNGKEIPSGATSPYINLDEGGNVINVTVTDSKGNDNTYVIMITRKYSKNNVNLSSLSVTDGTFSPKFDPEIYAYSVKVPRNIEEVRIKFETQNEKSKVTINGVEYKSGQQSDKIKLDLGANTVVVKVVSEDNKSTVNYTLSIIRDKVQGTLNEWVLVGGEWMYYDGDGIPAKNRWVKYDNQWYHVDVNGYMNKDGWLFDGGKWYYLDPNGIMLYGWIKDTGFWYYLRESGEMVEDSWTMLDGNWYFFNQYGQMQTGWTLYKGKWYYLDDHGVMQKGWITYDKNKYYLDDDGTMRTGWLYNGKVWYYFESSGRMVTGWQTIGNRSYYFDSKGAMKTGMLFLDGRWINLDSL
>NZ_AP019716.1|WP_035761374.1|3427875_3428853_-|substrate-binding-domain-containing-protein
MKKLLSLLMVFVLMFTALGCSKNGSKGTSIGNTKVFASIADDDKFKQTIVSGMESYADENNVDLDVAIAHNNVETQVQQIKDAKTKGYDVIVCILVESDTAQQIINAAGDIPVIFTNVEPDSGRLKSDKYIYVGSDENEAAKYTFESLKEYFKDKKSFNAVLFEGSMDSKSASVRTESLKSQLKKNGFDVNYVFQDDAGWDREKAKKMFEAFLKLNVSYDCIISNNDEMALGVIDAMEENGIDPSKVPILGLDATPEACKAISNGKMSFSIKQSGEGQGESVIKAAQALKNGDKISEIENGDSSGKYIWYPYSKVDKSNVQQYMR
>NZ_AP019716.1|WP_035761373.1|3428867_3430874_-|methyl-accepting-chemotaxis-protein
MWHAKINKKGGKYIPIKYKILSVILPVIILAIGGLITVSYNKSSKIIEENSYSMLESSVKNQTIQIENWLENNLQTFNTIKKSLGSTQYSQEELKKILNQYYNFNSNFLDGLYISDLQGNVISADNSQMKFENATSSQWFKEGLTHIKMRYGEAHDDYAGNKVISATGLIVDNDNNPVGVIGADVTLNRISIIVNSLIEMDDAQSFLVNKDTGMVLASSDSLEPYTILGENNENSLYSKIAQSIESGQHSAQEIENNIVDMHDVKNTSWILVSYVPKSSILSSMFTLRNYMVIIAIVALVVLVLITHRTINYIINPVNDISKKIVKMAEGDFSIEIDVKSNDEIAVMSQSLKNFIESMRVMLNDIKDISMEQKNQSFESKNISEHLFDSSKQQAESMNNLNIVVGEMAEATNQIADTATSLAGIACETNDNGNKVKDKMIETVKMSEVGKKDMEHVEISIRTIETSIKELKDVIDEVGKSSEEINSIVSIIGEIAESTNLLALNASIEAARAGEAGKGFSVVASEIGTLANNSTSSVNDIAKLINNINKLISNVVNKVNESVNHVNESSELITDSVRKFDNIYNTINESDKLVADMLKKVEEVGKAADNMAAISEEQAASSEEISSTSQDMLEHSQNITQSSYNVAKGADVLSDIAKQLESEVEKFKL
>NZ_AP019716.1|WP_035761372.1|3431341_3432856_-|cadherin-like-beta-sandwich-domain-containing-protein
MRKLREGIAATVLALYSLIGIEMLSGSLTCVEAYAKNIEDKPYLKDIYVGLGYDIEFIKDKYEYIVDVDKDVEDIYVKTRPENDNDIIKINGKVITKDDKFKKDLSLEMGKNKVVIEVIKNNDNNEEEYTDNDDFSEDDVQNDKDKYGSAQDKTVYTLYIYRGGADEVYLKNITLDKSNIGYFVNKKNYNIESDENGQLVKLEVETFGDEYSVFVNGNKLDFTNSLSLKFKGIGKYTITLDVVDDETKRKSTYVLNIYRGIPVTPNVSDSINSVLKPNQWVIVNGRWRYNDAVGQPLKNTWFFDMNYDSYFYFNGRGNMKTGWINEGGNTYYLGNDGMMRTGWVEYEGKWYYLDMNGVMRTDWVKNNGEWYYLDQDGSMKTGWIVDKENWYYLNNDGSMETGWILDYKKWYYLSQNGAMKTGWAQYKDDWYYLNNDGSMKSGEWVEYKDKWYYINYSGTMRCGWLYKDDKYYYFNEDGSMRTEPIVLEGYLYNFNEDGSVNFND
>NZ_AP019716.1|WP_002582356.1|3433294_3435076_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MIKRMNKLTALMVAATAVASIVPAVSASAAAKLEVQEGNIDAAVAYGDGKYVYDGYLTDDDESGLYFNNGTKDSFLENDEDYEFGSEKYGTKYTIVENDGEDYLLDLSSGKVLDDESIEDLRNNVELKLRTTLKKADDRYATVNNKIVFENNDEIAQVLGNQFGDVWYSYGVKSADSDKTLYGFANESGKYIDASALANMTVSTTDSAVRVTEFDKEKNDAMVSLAEAPKVIAQDSSYLYAITKVNVTIAGEADGTRTYIQKISKAQGDTKDGAYMPKSVDSYEISSNFYIDKDNDDTAKAEELLLDENNMVRVIKDTIYVTTVSEDGKVYVNTIKLKKEKVTKNDGTKKLDVYVAVKDQDDDEKIEGGANAVSIDAEGNTWAVNKGKIYKFNGTEFVEVYTCDRTIDHLDVYDENNLIAWNKENEVFATVQTKDGNGTDEGDKEETKAGWVTNADGTWSYNKADGTKTTGWLLDGSTWYYFNANGVMQTGWVNVNGTWYYLNPVSNGYKGAMQTGWLNDNGTWYYLQSNGAMKTGWLNDNGTWYYLNSNGSMKTGWLLDTDGNWYYLQSNGAMAKNTTVDGYKLGSNGAWIR
>NZ_AP019716.1|WP_035761371.1|3435865_3437869_-|ABC-transporter-ATP-binding-protein/permease
MKLVQLKNINKYYDGSKKNRFHALKDIDISFERGEFIAIIGESGSGKSTLMNLIGGLDSDYSGDIIVEGNNINTYNQKQLDIYRKDKVGFIFQSFNLIPHLSVLDNVTIPMIISGASKSSRVKSGREILKKVGLEKYEDKKPDKLSGGQKQRVAIARALVNNPHIIIADEPTGSLDSHNTDQILNLINEIVKEGKLVIMVTHSEKVASCADRIVEIKDGVIVKDIRNKQIKEYEADLSYGEKYENGKRLNSNLHIKRKNKNLSVFSAVKLALINMKEKFLRNILISLGASIGIMGVVLMLGFGNGIKTYFNNAMDNYVNPLVIEVNMPEADEEFKDSDNIIDIPKMNSGTAFEEEDFEKLKSIENVDSVEKGYNVIAMGANSVSTDHGGCNIIRLATVSSGILESSLSSGNIPKEGEILINKSVADKLGENIIGQKVKLSILIGETKVKNEFIVSGIYEGAYGDFNSMIKCAFINYSDLEKIYTQNNRELKPNTAYITSSAENYTDGIKLKAEEMGYTGSSQEQMTNLFNEMISITTYVLSGIAAISLVVSSIMILVVLYMSVVERIKEIGILKAVGARKKDIRRIFVSEAFLIGIFSGLAGVGISIVIMKLINRMSLQIFSVDLLLIDTNHIITGICLSVIISIIAGVMPAAKASRLDPVDSLRRE
>NZ_AP019716.1|WP_035761370.1|3437865_3438372_-|VanZ-family-protein
MKNKFVLIAICFLCFGFILFNSSQISTVSNTRSREVVNNLIKVVSKTKAGEILLYKVNETELNLIVRKIAHAFEFFLLGIVLCFTFRYFKIDDNNLLIYTLFTVLFVAVIDEFFQIFIQNRTSSVVDVLIDFGGGILANTLFFIFSSARGKHYKKTTHMKRFVMEKNR

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Crispr_ID: NZ_AP019716_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019716_5

3516159-3516376

Orphan

Consensus_repeat	Method
TTTAAGAAGTACCAAGTTCC	PILER-CR
TATCTTGGAACCAACCAGTCTTCATAGCTCC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_AP019716_5

>merge|NZ_AP019716|5|3516159-3516376|PILER-CR,CRISPRCasFinder
TTTAAGAAGTACCAAGTTCCGTTAGTATCTTGGAACCAACCAGTCTTCATAGCTCCGGATGCATTTAAGTAGTACCAAGTTCCATTATCTTGGATCCAACCAGTCTTCATAGCTCCTAAGTATCCATTAGATACTGGATTTAAGAAGTACCAGTTACCACCTTCTAATAACCACCCTGTAGCCATAACACCATCAGCCTTTAAGTAGTACCAAGTTCC

>NZ_AP019716|5|1|3516159-3516376|PILER-CR
TTTAAGAAGTACCAAGTTCC	GTTAGTATCTTGGAACCAACCAGTCTTCATAGCTCCGGATGCA
TTTAAGTAGTACCAAGTTCC	ATTATCTTGGATCCAACCAGTCTTCATAGCTCCTAAGTATCCATTAGATACTGGA
TTTAAGAAGTACCAGTTACC	ACCTTCTAATAACCACCCTGTAGCCATAACACCATCAGCCTTTAAG
TAGTACCAAGTTCC

>NZ_AP019716|5|5|3516184-3516274|CRISPRCasFinder
TATCTTGGAACCAACCAGTCTTCATAGCTCC	GGATGCATTTAAGTAGTACCAAGTTCCAT
TATCTTGGATCCAACCAGTCTTCATAGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019716.1\|WP_035762030.1\|3503807_3504827_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_AP019716.1\|WP_035762038.1\|3511987_3513583_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035761584.1\|3527402_3528641_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035762043.1\|3518099_3518648_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_141912264.1\|3521288_3523103_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035761583.1\|3526118_3527306_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035762032.1\|3505437_3506319_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_AP019716.1\|WP_035761586.1\|3531849_3533634_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293817
NZ_AP019716.1\|WP_002582428.1\|3531302_3531530_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019716.1\|WP_141912261.1\|3518838_3520695_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035762036.1\|3509987_3511832_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|377422
NZ_AP019716.1\|WP_051119267.1\|3508652_3509801_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341491
NZ_AP019716.1\|WP_035761585.1\|3529036_3530368_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_080646799.1\|3502855_3503821_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_AP019716.1\|WP_035762033.1\|3506762_3508184_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|274396
NZ_AP019716.1\|WP_035761582.1\|3523851_3525687_-\|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035762039.1\|3513851_3515657_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_AP019716.1\|WP_035761587.1\|3534043_3535774_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP019716.1\|WP_035762031.1\|3504853_3505405_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_AP019716.1\|WP_035762034.1\|3508269_3508620_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP019716.1\|WP_035762030.1\|3503807_3504827_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_AP019716.1\|WP_035762038.1\|3511987_3513583_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.27517e-28
NZ_AP019716.1\|WP_035761584.1\|3527402_3528641_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.55857e-23
NZ_AP019716.1\|WP_035762043.1\|3518099_3518648_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.94162e-25
NZ_AP019716.1\|WP_141912264.1\|3521288_3523103_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.46764e-25
NZ_AP019716.1\|WP_035761583.1\|3526118_3527306_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.42476e-26
NZ_AP019716.1\|WP_035762032.1\|3505437_3506319_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_AP019716.1\|WP_035761586.1\|3531849_3533634_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	1.58595e-37
NZ_AP019716.1\|WP_141912261.1\|3518838_3520695_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.08824e-26
NZ_AP019716.1\|WP_035762036.1\|3509987_3511832_+\|O-antigen-ligase-family-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	2.62398e-06
NZ_AP019716.1\|WP_051119267.1\|3508652_3509801_-\|hypothetical-protein	gnl\|CDD\|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	7.67063e-09
NZ_AP019716.1\|WP_035761585.1\|3529036_3530368_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.59611e-33
NZ_AP019716.1\|WP_080646799.1\|3502855_3503821_-\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	6.51921e-62
NZ_AP019716.1\|WP_035762033.1\|3506762_3508184_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	2.02238e-166
NZ_AP019716.1\|WP_035761582.1\|3523851_3525687_-\|cadherin-like-beta-sandwich-domain-containing-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.46351e-27
NZ_AP019716.1\|WP_035762039.1\|3513851_3515657_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.12842e-28
NZ_AP019716.1\|WP_035761587.1\|3534043_3535774_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.6267e-38
NZ_AP019716.1\|WP_035762031.1\|3504853_3505405_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.0775e-104

>NZ_AP019716.1|WP_035762039.1|3513851_3515657_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFNRTSKMTALLVAAAAVTSIVPATAAERLGTKEGTITNAIAFDGTYVYDGYRTDDDDAGLYFNNGKDKMVDEDEDYDYNLAKYGSKYALIQDDEDFLVDLSNGKILDDESVQDKESNTTTKLNTNLKKTDRYGKTTSGAVEIDRISQGSFGDVWYMYTATPASDADVDAEELVDGKLVGFTNESAKYVDATKTANIYVYSAAKETTVKVSEFNDEVDFTGKDKNSYKVEAKLESLKAIAQDSDYIYAVAEVSVVETKKEDGTTTPSTQYFLQKISKSQGDKKDGAYIPKSVTSYQLDTDIYDDSDVNTAANLLTLGQDKEADAKYYVVENGYQVKNGNLYVTAVNSSNEDGKGADTVIVYTVKLKKTKIDTLAGVKNVDAYVAISDDDNDQDIINTADKASISIDAEGNTWALDKGKMYKFTGSEFKEIYTCDRSLNVLDVYNEKNLIAWAEGEDVYTTVNEGKEVTDEEAGKEDDKTEEVVKSGWDKNADGTWSYYNNGAKATGWVQAGAWYYLNANGIMQTGWVNDNGTWYYCNASGAMQTGWLLDGSTWYYLQANGAMKTGWLLDNGTWYYLNANGSMAANTTVDGYKLGANGAWIR
>NZ_AP019716.1|WP_035762038.1|3511987_3513583_-|cadherin-like-beta-sandwich-domain-containing-protein
MNKNIKRTVAMALTLSALATIEPASSINILGAQEANAATSDKIYFDSLRVSGAGSIKLSDSKTKYSIYVPKSQESATITIKKDSSSDEIECDDDAVTGITGKESGESTCKIKVDLDEKGSTANEFEVKVSNGDKSRTYTLKIYRKNVSSDDDEDNDDIYLDSINLSAGSIDFSRKKAEFDVVVDKDVDSIKIQAKPEDEDYKVEIGGEEVDEDCKWRTEVDLKTGKNVVEIYIEDEDDDDEPQRTYTLNIYRGTKPSSNTATGEIDTKQDEIYVKKLVLNDGDVPVTFDKRITSYDVTVNKDLEDIIVKAEPEDNDDLVKINGSKADSSYRKRVALNSTGTTTIEIKVYNDYDDDEDDYEERIYNLNIKKAGTTTDSSQNNNNSSNNNNSNNNNNGDAGNNTTVNPSAKVNQWVKNEYGLWQYNDALGKPLLNQWFKDGANWYYLNEYGIMQTGWISQGSSWYYLNDAGIMQTGWVNDRGTWYYLNDNGAMKTGWHKDSNGKWYYLNEYGVMLSNVYVDSYRLGADGAMIK
>NZ_AP019716.1|WP_035762036.1|3509987_3511832_+|O-antigen-ligase-family-protein
MENLKKFCKEKSITFFFPIALVLTIVPLIVRMRISEPDEDTLKLYGSSANSDLFTQNKEICLIFLSAIILIIAITCFKKFYEKKDKLINIMIICSLIFLGFTFLSTLFSKYKHVAFWGIYDRSEGFITIACYILLFIYSIYTFKKTEEFKFILIPILILVYINGFLGLFQYFGSDLIKTSLGGLIAIPSSYNIDPSKLSLAYESGTIYGTLYHYNYVGSFTALVLPILFGACVIEDDIFLKLLSMGGCVTGLWLLFGSTSRAGLIGFGAIIVFACIFFGKLLLKKKKAILITIACLAVFTVGLNFATSGKIFNRIPSLVADGLSLFKSNTDFDYRDHIPVKNIEHIDNNIVLTLPTDTLTISFENNDYVFRNSKNEVVDYKSEFNSKIKAYDYITTDANFSNISFRSGKIKSKTKNDGLMLILNGSNEFMFITRDDNSMHLIDPKTLEEIDLEFPETIGFNGKEKLASARGYIWSRSLPLLKDTLILGSGPDTFSFDFPQHDMLGKLYAYGTTNMIISKAHNLFLQIGLNNGVVALIAFVILIMVYIVDSFKLYALKNKYDEKQILGSILALSVIGYLFTGLFNDSVICVAPIFWIILGVGAAVNFINKKAENK
>NZ_AP019716.1|WP_051119267.1|3508652_3509801_-|hypothetical-protein
MQIYQLMNKDNLVLEFIKADTLEGQFKILSENTKANSPYLLKNNNGELDTWINNRGIPTNREHIEKVLLSLNLDSKERFNLLIVNHAASLNDTYWIKEKNELNIDGKNLEWKDVSLYRGFKEKLGLISFFGNISSLGGKIKTPELTTQGMLRKAWRMVGNDIYLYKANTHGYANAGNEMYSEIIAWQIAHILNLHYVKYEIEKWNEVYCVRSKLFTSEETGYLTMTEYLNKQLGSRTKWRYGDVCNVLPRNFIDQLNDIMIFDFIIENKDRHFSNFGFLIDNNDGSLKSLAPIFDNGYSLLNFEMEQDLINYDYNKSMIGTFDIENKIQAKEIIKKDPQKYKKWANILANNINKIDFHEVPEYRSDAMKKLILSRCKMMQEF
>NZ_AP019716.1|WP_035762034.1|3508269_3508620_+|hypothetical-protein
MEDKILELLQVMNAKLDKNSSDIADMKYEMTGMKSEITSIKSEITSIKSEITSMKSEMTTMNSKITRLEEGQKAIKLTVDSIKCKVDEMTNDMHRVEVATAQNWTDIAILKSINKQ
>NZ_AP019716.1|WP_035762033.1|3506762_3508184_+|undecaprenyl-phosphate-glucose-phosphotransferase
MIKENQNLLNKINAFTDILILFVSMVISYFIRFTLLYHDEFYIKLYTYLKFTVILIPIYLILYVFFNLYDPVRTSLFSKECSKIINANLILITIALSSLFVFKLVHISRLVIVIFYFVNTTLIIIKRGFLRRILSNLRKKGLNLKHVLIVGAGKTASEYLDVIQNNKTYGYNYVGYVSNDSGFYGEKLGDYSQLLDILFEYKFDEVVCALDLKDAEYIEKIVSDCEKSGTKISIIPFCYKYIPSQPYIDQIGNLPLINIRRIPLDNIGNAFMKRTLDILGSLCLISLTSPIMIITAIIIKCTSKGPIIFRQERVGLNKSIFTMYKFRSMKVNSKETTGWSTNNDPRKTKFGSFIRKFSIDELPQFFNVLKGDMSLVGPRPELPHFVDEFKDEVPLYMVKHQVKPGITGLAQINGFRGDTSIKKRIEFDIHYIESWSILLDIEIIFKTAFKGFKNNEKLIITNKEICQDESLKN
>NZ_AP019716.1|WP_035762032.1|3505437_3506319_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MTKGIILAGGSGTRLYPLTMVTSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPNDLPNFEKLLGDGSRYGINISYKVQPSPDGLAQAFILGEEFIGEDNCAMILGDNIFHGNGFTTQLKKAVENTERATVFGYYVEDPERFGVVEFDENGKVISLEEKPEIPKSNYAVTGLYFYDNKVCEYAKSLKPSPRGELEITDLNKIYLEKGKLDVITLGRGYGWLDTGTVDSLSEASEYVRVIENRQGLKISCIEEISYKNGWINKETLLESAVKYGKSPYGQHLKNVAEGKVIY
>NZ_AP019716.1|WP_035762031.1|3504853_3505405_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MNLIKTKLDGVYIVEPQVFGDERGWFMETYSAIKTPEIVCDFVQDNQSYSKEKGILRGIHFQNGEHAQAKLVRVVKGTVLDVAVDLRKGSPTYKQWVAVELSAENKKQLFIPRGFGHGFVTLSNDVEFVYKTDNYYNHESDRSIRFDDPEIGVEWGIENPILSEKDKKAPLLKDSDCTFIYKE
>NZ_AP019716.1|WP_035762030.1|3503807_3504827_-|dTDP-glucose-4,6-dehydratase
MKIIVTGGAGFIGGNFVHYMLNKYNDYKIIVVDSLTYAGNMETLDSVKDSSNFSFYKIDIADREAVYEMFKKENPDMVVNFAAESHVDRSIENPEIFLRTNIMGTQVLMDACRKYGIKRYHQVSTDEVYGDLPLDRPDLFFTEETPLHTSSPYSSSKASADLLVGAYYRTYGLPVTISRCSNNYGPYHFPEKLIPLMIANALNDKELPVYGTGENVRDWLYVEDHCRAIDLIIHNGKVGEVYNIGGHNERTNLEVVKTVLRELGKPESLIKYVSDRKGHDMRYAIDPTKIHNELGWLPTTTFDEGIKKTVKWYLDNKSWWENIISGEYKNYYEKMYDNR
>NZ_AP019716.1|WP_080646799.1|3502855_3503821_-|glycosyltransferase
MITDKPLVSILLAVYKPNENWLIEQLISLNKQNYENLNLYVYDDCPEYPTNTEIFNKYITNFEYKIIRGEVNKGSNKAFEELTKIADGDFFAYCDQDDIWETNKISLMMDEFTEDVTLVCCDLSIIDEHSNKTHESLCDIRKRIVYKSGYGLAKDLLMTNFVTGCAMIVKKNIAIKAVPFIDELVHDQWIAVIAALGGKIKFVDKSLVRYRQHSNNQTGILTGVVDKTSYYEKRIDDFYSRYLVYNKAIGNEEEVKQTIYESIKWIEARKRYSQKISFKDLKIMIKYRDIHKVSILIESILPFIPNFIFRYIIKLTKKGLL
>NZ_AP019716.1|WP_035762043.1|3518099_3518648_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MRKSFNKAATLLLSLAIMNVIFPVNAAEKKQYETNIEVENNKLQVDDEGNAVLELVCDSNSGFVKNNGKTEFYDVSGRQAKSSWINISGKWYYFDLNGIMVTGWQRISNKWYYFLEDGSKVTGWIMDEGHWYYLGEDGMMKSLQWVNIDGSWYYFNEKGIMEKDTIIDGFKINSNGISELKL
>NZ_AP019716.1|WP_141912261.1|3518838_3520695_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFRRSSKLTAMLVAAAAVVSIVPASASERLGNKDGHISTGIAFDGGYVYDGYRTDDDDAALYYNNGSKDVNVDEDEDYDYDSMTKYGSKYALVYDSNEPYLVDLTTGKIEDDESLQDKYENSQTKLKTALKKTDRYGKSTTEAALTLVDAEVGATGNDAKYVSGKLNDVWYMYTVDKALVDDGSDDAAAAGKLFGFTNESGKYVDASNLANLYVYSPEEDKTVKISEYRDTEKNITAELENLQPIAQDKDYIYAVATVTVTDTNTKKAEATQYFLQKISKEQGDKKDGAYVPKSVTSYQIDGGTIYKDDDMEDANGLFPTTTSVAPVNSDGYNMVNYNVKNGNIIVTGVKADSVKVFTVKLKKAKVDSVEGSEDRDAYVVMQDDDADQDLTDLAEVKVNADKTLEDRANTSLKNSAISIDAEGNTWALDKGKIYKFDGSDFKEMFTCDRSLNSIDVYDENNLIAWDATSGGDVYTTVSEGKKQTEEDAGVEEDKKDETPVVKAGWDKNADGTWAFYKDGAKATGWLNDKGTWYYLDAAGTMKTGWVQAGAWYYLNASGAMQTGWVNDNGTWYYCNGSGAMQTGWLLDGSTWYYLNANGSMAANTTVDGYVLGANGAML
>NZ_AP019716.1|WP_141912264.1|3521288_3523103_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFRRSSKLTAILVAAAAVVSIVPATAAERLGTKDGNIENATAFEGGYIYDGYRTDDDDTALYYNNGTKDVNADKDEDYDTYDLSRYGKKYATVKDGSDQYLVDLSNGKIDDEETLDDKLENAKNKLKSKINKVDRYEKFDAFVSNDKYDKDKDDQNYVVKVLDDKYGDVWYKYKAKGDNDAEDRTTGSAVGYYLGFTNDSGQYIDVTQTANMYVYDKKEHKTVKVEEYGKKSGENNIIVRLDDVDILTQDKDYIYTVAKVTVDGDTQYFFQKISKEQGDKKDGAYLPKNVSSYQLDNETLYDDGDMHTAYKVLVQKNDDIKEDGTKAGHETVNVEVSGGMVYVTTVSKGNDENANVKIYKLKFKKDKINAKDKTKNVDTSVIKKDGDGDHDTVSRNNTDKGDVYSIDANGNTWILDKGKIYKVDGTDFKEVYTVDRSLNKLDVYDENNLIAWDSEGEVYTTVSEGKKQTEADAGVDEDKKDETPVVKAGWDKNADGTWTFYKDGAKATGWLNDKGTWYYLDAAGTMKTGWVQAGAWYYLNASGAMQTGWVNDNGTWYYCNGSGAMQTGWLLDGSTWYYLNANGSMAANTTVDGYVLGANGAWVK
>NZ_AP019716.1|WP_035761582.1|3523851_3525687_-|cadherin-like-beta-sandwich-domain-containing-protein
MNKRIKKIIALTVAFSAVTTIAPKTFLGLTSKPAYAASYTARNGELTSLVIKSTNGDKLSLKDGYNGDTVKLSDEKEYFIKLTDDSEGIVINAEAKGSDRIVRIFLTDDSDATAYKPGDKLYLGKGNTTVYVRTYASLSDFRQAKDKDKDVSICEEEYEVNVKKTTGSSYEDTTQDPVYLKDLSLNKGDITFLKQRTSYNIKVASSVNEIKITAEPEDDSSRVRIDGSLVDEDDNYRKTISLDKGKNEIKIKVTDDKDNQRVYTLNITRGSSSDGDSQGDVYLSSLELDEADLDFEEDKTSYEVDVDEDVSKILVTAEPEDEEYLVTINGSEVNSGDEYEKKVSLSKGKNTITVVVEDEVEDAKRTYKVTVNRGTVKDDEDDKEDTDDKNDNSSDDKNSVGWVKVDNDWKYRGEDGKFYVNKWLYDKEQGVYCYLKADGFRATGWLQEGGNWYLLDSKGAMLTGWQYTGGQWYYLQSSGAMKTGWLKEEKTVTVEDTSTATDKKEDEKTSTSVSTNKTDTSKTDDKKEDTTAKTKKVETWYYLQANGTMKTGWLLDNDKWYYMNLSGAMQTGWVIDNNSKYYLDQSGVMATGTKTIDGKEYKFTTSGALIS
>NZ_AP019716.1|WP_035761583.1|3526118_3527306_-|cadherin-like-beta-sandwich-domain-containing-protein
MNKNLKKVIALTLAVNAIALIEPAKEISIFTETAHAAKYDDPLLSDLKVSGYDVDFDKETYSYSIKVDKDVDQITVTAKPEDSAYEVSVNGDDAKEDDKYKVKVDVKQGKSTITIRVKDEEHDLKTTYELEVIRGSASYGEDLDEDDVYLDNITLSAGKINFSSKVTEYTVSVDDSVRYLDIKAKPMDSDEEYVEINGEEAEEDDDYEQTVTLKDGKNKITIRIENSEKSKKYILNVYKGVEPPKKDDSDEDEVKEDSNNNNQNSNNNSSQYKNQWVTTQGIWLYYDENGNMMKNQWFNDVNAKKSYFLNENGVMVTGWLQKDGNWYYLNEDGSKHIGWKFVMGLWYYLDGEGVMKTGWIQDANGKWYYLNSNGAMASNTTIGGYKLGADGAWIK
>NZ_AP019716.1|WP_035761584.1|3527402_3528641_-|cadherin-like-beta-sandwich-domain-containing-protein
MNKNIKKIIAMTLTFCAVSAVCGVKNLNLSGEGTVAAFASDKSSLNLESISLSTGKIDFSSDVTSYKVYYNKAVKNIDIKVSPEGSDKRIRVTINDESVSSDDSYKKNFKLSVGENIFKIKIENRDDESQSKTYTLKAYRGTDENDQEIEQDLYIDYLTINGKEMSLSKDKKVYDYKVDKDVKEAKIVIEPDQKYYTVKIGDDTYEGEESIKKTFTLTEGKNEIKIKLTDGEDEEKKQRTYTLNIYRGVDIPTSSTTTNNTTSTGNSSTNTGNNTGTNNSTSTGTTNSSSSTTNTVSNSGKWQQNSAGKWYYVDSNGNAAKNKWFFVQGDGTMATGWVSFGGNWYYLNDDGTMATEWLNNGGKWYYLGSDGAMKTGWVQLSGNWYYLYSDGSMASNTTIDSYKLGSDGAWIK
>NZ_AP019716.1|WP_035761585.1|3529036_3530368_-|cadherin-like-beta-sandwich-domain-containing-protein
MNKNVRHLIAAALVISAFSAVAPANIFNLGVIEANASTYSGASNGQLKSLSVYRSTGKEAQLYSNLAATKETELTSSTDYYIDLKGSDGVELDAEVEGDDYVVKVFKSSDKDAEGYDPSDLGLVPIDSGSTKLYLRTYRSEDDYKDAWDDGNVKKCLKTYTLHISKDNVNSDEEDDVEYPYLSSIYLSDGSINFTKSKTSYKANVDEDVKQILVRAKPQDDDDLVEINGDSVDEDGDYEKKVSLDKGENTIEITVENDDETTTYTIVVNRGGKSSDSSDEKDSTNIITGSDSFLYNSGTMNSWVSKNGKYMYMDGTGQPLKNKWWFDVSSASDYYFDKDGYAQTGWAQINGKWYYFDNSGKMQKGWISNDGKWYYLNVSGAMVTGWYQDAGKWYYLNSDGSMKTGWLNDNGSWYLFNSDGSMVTGNVLVDGVQYSFASNGVMI
>NZ_AP019716.1|WP_002582428.1|3531302_3531530_+|hypothetical-protein
MTHKDKPYLPKVRTDYHPSNSDCQSSTGVGQTTNIPNPASDSIVVNNIASQEFDYTQDLMDINDFSQNSKHTKKY
>NZ_AP019716.1|WP_035761586.1|3531849_3533634_-|MBL-fold-metallo-hydrolase
MHNIKKLLMTISMTLAFSCSLLSTGAYAVSNKTSSDVSSESTQKTDDKNSTSNSDKNSSKTDKKEDKKNQDSSTIKNEDIVDGEEQDETSTKDDEVIKVEIVPHWENINGKLHYVTKDGIIEEEGWFKEKDENPDADNDNEYYLDENHAAVTGWNKIGGQWYYFNEAGVKQTGWQLINYEWYHLDKNGIMEKGWIKDDGAKYYLSDAGTMVVGKKYIDDKWYLFANDGKLQTGFYTYKGKDYYSDKDGVMVTNQWIKTKNYQYYAKADSSIAKGNIIIDGKLQVFDNNGRFIESEDADNYLFVKYLSVGNADCQFIRLPNGETALIDTGDVTTREQLVNFLNEQKLRKKGGKKLIDYVIITHGHSDHIGGLAAVLNNFEVGKIYMPKNAAMQNWYSGLKVNDEVSQADIDMLKYDYQVYKEAAKAVKDNGLKFINPTPGQYIDSNEILQFVQSGKDFGPIGSQKHMAEYWGINENSAIVYLNYGDFQGLFAADMEWTSEKDFWVSDLLDGKKVDLLKVPHHGYNTSSTGDFLKYVNAPVGIVSRAEDSIDKNTAFNNLVNNGVMLYETSQSKNGGISVYATEDNWSMEDASKDN
>NZ_AP019716.1|WP_035761587.1|3534043_3535774_-|PAS-domain-containing-sensor-histidine-kinase
MREEDIEIELKNILNSIPYEITIKDLDCNYIYANEKFCKNLNCDFQEIYKKNMSNFWSHKDYEKIREIDKEVIKKNKGIFSERKLRKINDNERWFYMYKSPFNMNNEKCIITISQEVTLNKKMVNLLEDQIKNYSLSTYGYYDIFYDTENRNALLDDNYKNKIKSICKNLCEQLESSNINIYLYDEEQNDLNLYISSHEIDTIEKKNINLGNRRFLKFSGVNLTIDYKMLHKLYGNKKYNVKIYKIKYGSNIIGIMNVYYDKNQNLNVEDKDLINSICYKFGLLFQNKIITRKLKEEENKKVKYRQALEIENLKTEFFLGLSHEIRTPLNIIITSIHSIDDILKTHECEGYRDRIIKSLNYIKQNSNRLLRLINNISDVKKLDHMCYDVNYTNCNIVEVIEGIVISVSDYIKVSQRNIIFDTEEEEITTACDLDKIERIMLNLLSNAIKYSDENTDILVKIRLSEKKDEIIVSVWDDGVVIEKKDSIRIFDKFVQLDKLLNRPCEGTGIGLFLVKSLLEIQGGRVWVNNEVIKGAEIDFSLPVRTVEEKEDKHNITTSPQDKVEIYNVEFSDIYSL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP019716_1	1.1\|558410\|26\|NZ_AP019716\|CRISPRCasFinder	558410-558435	26	NZ_AP019716.1	861484-861509	2	0.923
NZ_AP019716_1	1.1\|558410\|26\|NZ_AP019716\|CRISPRCasFinder	558410-558435	26	NZ_AP019716.1	3411164-3411189	2	0.923

1. spacer 1.1|558410|26|NZ_AP019716|CRISPRCasFinder matches to position: 861484-861509, mismatch: 2, identity: 0.923

gaccaaatgtaaaatttggagtttca	CRISPR spacer
gaccaaatgtaaaatttggaggctca	Protospacer
********************* .***

2. spacer 1.1|558410|26|NZ_AP019716|CRISPRCasFinder matches to position: 3411164-3411189, mismatch: 2, identity: 0.923

gaccaaatgtaaaatttggagtttca	CRISPR spacer
gaccaaatatgaaatttggagtttca	Protospacer
********.*.***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019716_1	1.1\|558410\|26\|NZ_AP019716\|CRISPRCasFinder	558410-558435	26	NC_049978	IAS virus, complete genome	44111-44136	4	0.846
NZ_AP019716_5	5.4\|3516215\|29\|NZ_AP019716\|CRISPRCasFinder	3516215-3516243	29	NZ_CP006904	Clostridium botulinum 202F plasmid pCBI, complete sequence	36037-36065	6	0.793
NZ_AP019716_5	5.4\|3516215\|29\|NZ_AP019716\|CRISPRCasFinder	3516215-3516243	29	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	435007-435035	6	0.793
NZ_AP019716_5	5.4\|3516215\|29\|NZ_AP019716\|CRISPRCasFinder	3516215-3516243	29	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	17579-17607	6	0.793
NZ_AP019716_5	5.4\|3516215\|29\|NZ_AP019716\|CRISPRCasFinder	3516215-3516243	29	NZ_CP016590	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence	115673-115701	7	0.759
NZ_AP019716_5	5.4\|3516215\|29\|NZ_AP019716\|CRISPRCasFinder	3516215-3516243	29	NZ_KJ776578	Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence	19616-19644	8	0.724
NZ_AP019716_5	5.4\|3516215\|29\|NZ_AP019716\|CRISPRCasFinder	3516215-3516243	29	NZ_KJ776580	Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence	24427-24455	8	0.724

1. spacer 1.1|558410|26|NZ_AP019716|CRISPRCasFinder matches to NC_049978 (IAS virus, complete genome) position: , mismatch: 4, identity: 0.846

gaccaaatgtaaaatttggagtttca	CRISPR spacer
caccaaatgtaatattaggagtttta	Protospacer
 *********** *** *******.*

2. spacer 5.4|3516215|29|NZ_AP019716|CRISPRCasFinder matches to NZ_CP006904 (Clostridium botulinum 202F plasmid pCBI, complete sequence) position: , mismatch: 6, identity: 0.793

ggatgcatttaagtagtaccaagttccat	CRISPR spacer
ttcatcatttaaatagtaccaagttccat	Protospacer
     *******.****************

3. spacer 5.4|3516215|29|NZ_AP019716|CRISPRCasFinder matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 6, identity: 0.793

ggatgcatttaagtagtaccaagttccat	CRISPR spacer
atttgcatttaagtagtaccaatttttat	Protospacer
.  ******************* **..**

4. spacer 5.4|3516215|29|NZ_AP019716|CRISPRCasFinder matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 6, identity: 0.793

ggatgcatttaagtagtaccaagttccat	CRISPR spacer
atttgcatttaagtagtaccaatttttat	Protospacer
.  ******************* **..**

5. spacer 5.4|3516215|29|NZ_AP019716|CRISPRCasFinder matches to NZ_CP016590 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence) position: , mismatch: 7, identity: 0.759

ggatgcatttaagtagtaccaagttccat	CRISPR spacer
atttgcatttaagtagtaccaattttttt	Protospacer
.  ******************* **.. *

6. spacer 5.4|3516215|29|NZ_AP019716|CRISPRCasFinder matches to NZ_KJ776578 (Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence) position: , mismatch: 8, identity: 0.724

ggatgcatttaagtagtaccaagttccat	CRISPR spacer
attgttatctaagtagtaccatgttccat	Protospacer
.    .**.************ *******

7. spacer 5.4|3516215|29|NZ_AP019716|CRISPRCasFinder matches to NZ_KJ776580 (Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence) position: , mismatch: 8, identity: 0.724

ggatgcatttaagtagtaccaagttccat	CRISPR spacer
attgttatctaagtagtaccatgttccat	Protospacer
.    .**.************ *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445838 : 500244

Clostridium_phage(25.0%)

tRNA,protease,coat,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002582329.1\|445838_446858_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.5e-65	41.6
WP_002582328.1\|446866_447871_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002582327.1\|447985_449212_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	2.0e-21	27.2
WP_002582326.1\|449348_449666_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_002582325.1\|449745_450105_+	hypothetical protein	NA	NA	NA	NA
WP_035764768.1\|450226_451369_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033127508.1\|451510_452749_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.0e-52	51.9
WP_002582323.1\|452969_454094_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_035764142.1\|454241_455258_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_080630488.1\|455229_456006_+\|coat	spore coat protein	NA	NA	NA	NA
WP_003429682.1\|456182_457217_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_002582319.1\|457376_458498_-	glycosyltransferase family 4 protein	A0A2K9VGK0	Pontimonas_phage	5.0e-06	40.3
WP_002582318.1\|458606_459605_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_002582317.1\|459750_460614_+	sporulation peptidase YabG	NA	NA	NA	NA
WP_002582316.1\|460902_461145_+	hypothetical protein	NA	NA	NA	NA
WP_035764140.1\|461521_463084_+	DUF3794 domain-containing protein	NA	NA	NA	NA
WP_035764138.1\|463213_464029_+	cyanophycinase	NA	NA	NA	NA
WP_035764136.1\|464031_466641_+	cyanophycin synthetase	NA	NA	NA	NA
WP_035764135.1\|466729_467572_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002582311.1\|467647_468331_+	stage II sporulation protein R	NA	NA	NA	NA
WP_003412599.1\|468345_469335_+	DUF814 domain-containing protein	NA	NA	NA	NA
WP_002582309.1\|469382_469793_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003412658.1\|469995_470307_+	hypothetical protein	NA	NA	NA	NA
WP_035764132.1\|470489_472097_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	8.6e-153	51.6
WP_003412620.1\|472379_473915_+	transcription termination factor Rho	NA	NA	NA	NA
WP_002582305.1\|473950_475063_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA
WP_002582304.1\|475264_475474_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_002582303.1\|475885_476473_+	thymidine kinase	A0A249XXF6	Clostridium_phage	9.4e-57	57.4
WP_035764129.1\|476494_478252_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002582301.1\|478486_479569_+	peptide chain release factor 1	NA	NA	NA	NA
WP_002582300.1\|479683_480271_+	hypothetical protein	NA	NA	NA	NA
WP_002582299.1\|480289_481339_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	1.2e-46	38.0
WP_002582298.1\|481359_481809_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_002582297.1\|481947_482577_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002582296.1\|482595_483090_+	cytidine deaminase	A0A2H5BMD7	Streptomyces_phage	2.0e-15	39.8
WP_002582295.1\|483186_484335_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	9.8e-26	27.7
WP_002582294.1\|484570_485752_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_002582293.1\|486611_486971_+	hypothetical protein	NA	NA	NA	NA
WP_002582292.1\|486989_487670_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_002582291.1\|487701_487917_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_002582290.1\|487968_488448_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_002582289.1\|488450_488990_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_035764126.1\|489000_490515_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_027637068.1\|490690_491539_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_002582286.1\|491555_492947_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_002582285.1\|492961_493363_+	ATP synthase F1 subunit epsilon	NA	NA	NA	NA
WP_035764124.1\|493619_494261_+	hypothetical protein	NA	NA	NA	NA
WP_003429670.1\|494283_495546_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002582282.1\|495800_496871_+	stage II sporulation protein D	Q2XU88	Pseudomonas_phage	1.2e-33	35.4
WP_002582281.1\|497360_498122_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002582280.1\|498278_498533_+	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	1.1e-17	57.3
WP_002582279.1\|498612_499647_+	rod shape-determining protein	NA	NA	NA	NA
WP_003429668.1\|499719_500244_-\|protease	spore protease YyaC	A0A0A8WIQ6	Clostridium_phage	3.9e-22	37.7

DBSCAN-SWA_2

744944 : 752728

Micromonas_sp._RCC1109_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035762233.1\|744944_746732_+	thiamine pyrophosphate-binding protein	E5EQ70	Micromonas_sp._RCC1109_virus	2.0e-105	36.7
WP_035762235.1\|746749_747526_+	hypothetical protein	E5ERI3	Ostreococcus_lucimarinus_virus	9.6e-25	33.3
WP_035762237.1\|747569_748238_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_035762239.1\|748234_749293_+	iron-containing alcohol dehydrogenase	A9YVT7	Ostreococcus_tauri_virus	4.5e-49	33.1
WP_035762241.1\|749306_750227_+	NAD(P)-dependent oxidoreductase	A0A1D8EQC0	Escherichia_phage	5.3e-06	23.2
WP_035762243.1\|750314_751412_+	CDP-glucose 4,6-dehydratase	M4QRT5	Synechococcus_phage	7.2e-10	28.0
WP_035762245.1\|751396_752728_+	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	6.4e-69	35.9

DBSCAN-SWA_3

1066401 : 1150672

104

Clostridium_phage(21.05%)

protease,plate,tRNA,capsid,tail,portal,holin,terminase,integrase

attL 1067136:1067153|attR 1118520:1118537

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024040567.1\|1066401_1067604_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
1067136:1067153	attL	NA	NA	NA	NA
WP_035762823.1\|1067564_1068233_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_035762822.1\|1068256_1069135_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_035762821.1\|1069174_1070650_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_035762819.1\|1070717_1071686_+	porphobilinogen synthase	NA	NA	NA	NA
WP_024040571.1\|1071907_1073197_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_035762817.1\|1073505_1077270_+	mannanase	NA	NA	NA	NA
WP_035762816.1\|1077703_1078771_+	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002581003.1\|1078932_1079490_+	DUF3867 domain-containing protein	NA	NA	NA	NA
WP_002581002.1\|1079571_1080546_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002581001.1\|1080816_1081755_+	hypothetical protein	NA	NA	NA	NA
WP_035762814.1\|1081961_1083419_+	threonine synthase	NA	NA	NA	NA
WP_035762813.1\|1083433_1084330_+	homoserine kinase	NA	NA	NA	NA
WP_003414677.1\|1084329_1084767_+	ACT domain-containing protein	NA	NA	NA	NA
WP_035762811.1\|1084842_1085892_-\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	1.7e-141	67.5
WP_035762809.1\|1086009_1086507_-	ImmA/IrrE family metallo-endopeptidase	A0A1L2BY64	Clostridium_phage	2.7e-36	48.1
WP_035762807.1\|1086693_1087389_+	hypothetical protein	NA	NA	NA	NA
WP_153739175.1\|1087405_1087546_-	hypothetical protein	NA	NA	NA	NA
WP_035762803.1\|1089007_1089577_-	hypothetical protein	NA	NA	NA	NA
WP_035762802.1\|1089644_1090709_-	DUF4236 domain-containing protein	Q332B9	Clostridium_botulinum_C_phage	8.9e-05	44.9
WP_035762801.1\|1090810_1091155_-	helix-turn-helix transcriptional regulator	A0A1L2BY72	Clostridium_phage	8.0e-32	63.2
WP_035762800.1\|1091306_1091504_+	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	7.1e-09	52.5
WP_035762799.1\|1091641_1091872_+	hypothetical protein	NA	NA	NA	NA
WP_035762798.1\|1091872_1092529_-	hypothetical protein	NA	NA	NA	NA
WP_035762796.1\|1092595_1093030_+	helix-turn-helix transcriptional regulator	A0A1L2BY71	Clostridium_phage	1.2e-27	47.5
WP_035762794.1\|1093042_1093219_+	transcriptional regulator	Q8SBM7	Clostridium_phage	1.1e-13	66.7
WP_035762792.1\|1093445_1094201_+	ParA family protein	H7BUL8	unidentified_phage	1.8e-28	32.2
WP_035762790.1\|1094185_1095256_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_141912273.1\|1095300_1096242_+	helix-turn-helix domain-containing protein	A0A1L2BY83	Clostridium_phage	7.5e-40	45.4
WP_035762787.1\|1096260_1096416_+	hypothetical protein	NA	NA	NA	NA
WP_035762785.1\|1096429_1096618_+	hypothetical protein	NA	NA	NA	NA
WP_035762784.1\|1096726_1096915_+	hypothetical protein	NA	NA	NA	NA
WP_080646809.1\|1096932_1097064_+	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_035762783.1\|1097123_1097369_+	hypothetical protein	NA	NA	NA	NA
WP_035762782.1\|1097368_1097626_+	hypothetical protein	NA	NA	NA	NA
WP_035762781.1\|1097618_1097960_+	hypothetical protein	NA	NA	NA	NA
WP_035762778.1\|1097967_1098252_+	hypothetical protein	NA	NA	NA	NA
WP_161618997.1\|1098281_1098455_+	hypothetical protein	NA	NA	NA	NA
WP_035762775.1\|1098486_1098798_+	hypothetical protein	NA	NA	NA	NA
WP_035762772.1\|1098918_1099233_+	hypothetical protein	NA	NA	NA	NA
WP_035762769.1\|1099344_1099584_+	hypothetical protein	NA	NA	NA	NA
WP_051119289.1\|1099619_1100036_+	hypothetical protein	A0A141DZP9	Streptococcus_phage	1.0e-09	39.0
WP_002580972.1\|1100073_1100307_+	hypothetical protein	NA	NA	NA	NA
WP_002580971.1\|1100426_1100756_+	hypothetical protein	NA	NA	NA	NA
WP_035762766.1\|1100929_1101328_+	hypothetical protein	M9Q1J7	Clostridium_phage	6.2e-12	38.0
WP_002580969.1\|1101359_1101584_+	hypothetical protein	NA	NA	NA	NA
WP_002580968.1\|1101580_1102150_+\|integrase	tyrosine-type recombinase/integrase	A0A0S2GLG4	Bacillus_phage	4.4e-43	52.5
WP_141912169.1\|1102371_1102776_+	hypothetical protein	NA	NA	NA	NA
WP_035762761.1\|1102955_1103537_+	hypothetical protein	A0A2K9V441	Faecalibacterium_phage	6.7e-15	31.9
WP_035762758.1\|1103508_1105335_+\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	1.9e-172	52.0
WP_035762755.1\|1105379_1105613_+	hypothetical protein	A0A0C5AEE0	Bacteriophage	3.9e-14	47.4
WP_035762753.1\|1105623_1107174_+\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	1.2e-167	58.5
WP_035762752.1\|1107133_1108345_+\|protease	Clp protease ClpP	A0A0C5AEN1	Bacteriophage	1.7e-36	33.5
WP_035762750.1\|1108344_1108698_+	hypothetical protein	NA	NA	NA	NA
WP_035762748.1\|1108720_1109767_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	2.0e-78	41.7
WP_035762746.1\|1109776_1110007_+	hypothetical protein	NA	NA	NA	NA
WP_035762744.1\|1109993_1110308_+	hypothetical protein	A0A0E3Y618	Fusobacterium_phage	5.8e-05	33.7
WP_035762742.1\|1110307_1110886_+\|tail	phage tail protein	NA	NA	NA	NA
WP_035762739.1\|1110887_1111406_+	hypothetical protein	NA	NA	NA	NA
WP_035762736.1\|1111418_1112855_+	hypothetical protein	H7BVZ4	unidentified_phage	5.4e-74	36.0
WP_002580954.1\|1112855_1113386_+\|tail	phage major tail tube protein	A0A0C5AJ56	Bacteriophage	6.3e-20	35.3
WP_035762732.1\|1113443_1113782_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_035762729.1\|1113947_1116146_+	hypothetical protein	A0A218KCH0	Bacillus_phage	2.9e-42	45.6
WP_064062198.1\|1116117_1116351_+\|tail	tail protein X	A0A2K9V2S8	Faecalibacterium_phage	1.9e-08	43.8
WP_035762725.1\|1116338_1117268_+	hypothetical protein	H7BVZ1	unidentified_phage	2.0e-29	30.7
WP_035762723.1\|1117267_1117510_+	hypothetical protein	NA	NA	NA	NA
WP_035762721.1\|1117509_1118061_+\|tail	phage tail protein	NA	NA	NA	NA
WP_035762720.1\|1118066_1118384_+	hypothetical protein	NA	NA	NA	NA
WP_035762719.1\|1118373_1119528_+\|plate	baseplate J/gp47 family protein	A0A059WFM2	Vibrio_phage	1.7e-49	31.6
1118520:1118537	attR	NA	NA	NA	NA
WP_035762718.1\|1119527_1120181_+\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	4.0e-24	39.8
WP_051119287.1\|1120184_1121606_+\|tail	phage tail protein	A0A1V0DZY8	Clostridioides_phage	1.3e-38	51.0
WP_035762717.1\|1121625_1121925_+	hypothetical protein	NA	NA	NA	NA
WP_003432434.1\|1121940_1122126_+	hypothetical protein	NA	NA	NA	NA
WP_035762716.1\|1122216_1122426_+	hypothetical protein	NA	NA	NA	NA
WP_035762715.1\|1122473_1123229_+	DNA adenine methylase	A0A2H4J7L8	uncultured_Caudovirales_phage	1.3e-122	83.3
WP_035762714.1\|1123338_1123614_+	hypothetical protein	A0A2H4J1Q4	uncultured_Caudovirales_phage	1.2e-17	48.3
WP_035762713.1\|1123630_1123921_+\|holin	phage holin family protein	A0A0A8WF70	Clostridium_phage	2.4e-13	46.2
WP_051119285.1\|1123969_1125607_+	hypothetical protein	A0A075DXC6	Acinetobacter_phage	9.5e-06	30.7
WP_035762711.1\|1125785_1126139_+	hypothetical protein	NA	NA	NA	NA
WP_035762710.1\|1126237_1126579_+	hypothetical protein	NA	NA	NA	NA
WP_035762708.1\|1127012_1127954_+	hypothetical protein	NA	NA	NA	NA
WP_024040576.1\|1128041_1128839_+	RelA/SpoT domain-containing protein	NA	NA	NA	NA
WP_003407322.1\|1129107_1130202_+	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_035762706.1\|1130218_1131079_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_035762702.1\|1131317_1132466_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	8.6e-30	28.1
WP_035762700.1\|1132465_1133623_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_002580928.1\|1133657_1134296_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_003407320.1\|1134647_1135781_+	ATP phosphoribosyltransferase regulatory subunit	A0A1V0SLE3	Klosneuvirus	1.1e-16	25.8
WP_002580926.1\|1135825_1136455_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_003425009.1\|1136635_1137934_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_002580924.1\|1137920_1138958_+	histidinol-phosphate aminotransferase family protein	A0A142C026	Faustovirus	9.8e-17	24.1
WP_002580923.1\|1138980_1139568_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_002580922.1\|1139595_1140216_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_002580921.1\|1140212_1140929_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_002580920.1\|1140978_1141740_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_002580919.1\|1141768_1142098_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_002580918.1\|1142131_1142458_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_002580917.1\|1142655_1143831_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A0F7LAY0	uncultured_marine_virus	1.0e-25	25.2
WP_002580916.1\|1144237_1144432_+	hypothetical protein	NA	NA	NA	NA
WP_002580915.1\|1144527_1145343_+	hypothetical protein	NA	NA	NA	NA
WP_002580914.1\|1145429_1146713_+	trigger factor	NA	NA	NA	NA
WP_002580913.1\|1146873_1147479_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.2e-53	57.7
WP_002580912.1\|1147521_1148811_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.0e-143	62.2
WP_035761361.1\|1148998_1150672_+\|protease	ATP-dependent protease LonB	A0A1V0SHJ7	Hokovirus	3.0e-07	23.8

DBSCAN-SWA_4

1962378 : 2016203

Bacillus_virus(17.65%)

protease,tRNA,tail,capsid,portal,holin,head,terminase,integrase

attL 1955115:1955131|attR 2013377:2013393

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1955115:1955131	attL	NA	NA	NA	NA
WP_035765648.1\|1962378_1963257_+\|integrase	tyrosine-type recombinase/integrase	R9ZX86	Cellulophaga_phage	3.1e-11	32.2
WP_035765650.1\|1963534_1964977_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002580113.1\|1964969_1965704_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-31	36.0
WP_002580112.1\|1965694_1966939_+	ABC transporter permease	NA	NA	NA	NA
WP_035765653.1\|1967175_1968138_+	Rossmann-like and DUF2520 domain-containing protein	NA	NA	NA	NA
WP_035765656.1\|1968137_1968965_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	M4QNT1	Ostreococcus_lucimarinus_virus	7.3e-55	41.2
WP_002580109.1\|1969052_1969895_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_002580108.1\|1969949_1970324_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_002580107.1\|1970478_1970853_-	PH domain-containing protein	A5GYQ0	Lactococcus_phage	6.2e-38	60.5
WP_035765659.1\|1971324_1974195_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.5e-43	24.0
WP_003427591.1\|1974315_1974588_+	hypothetical protein	NA	NA	NA	NA
WP_002580104.1\|1974663_1974891_+	YgjV family protein	NA	NA	NA	NA
WP_035765662.1\|1975110_1976433_+	NCS2 family permease	NA	NA	NA	NA
WP_002580102.1\|1976499_1977174_-	hypothetical protein	NA	NA	NA	NA
WP_035765666.1\|1977446_1977899_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_035765668.1\|1978082_1979528_+	cadherin-like beta sandwich domain-containing protein	NA	NA	NA	NA
WP_003427608.1\|1979794_1981855_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.4e-62	40.4
WP_035765671.1\|1981907_1982837_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_024039739.1\|1982881_1983112_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_002580096.1\|1983335_1985000_+	acetolactate synthase large subunit	NA	NA	NA	NA
WP_035765675.1\|1985147_1986434_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_002580094.1\|1986551_1987157_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	6.6e-13	56.5
WP_035765681.1\|1987345_1987768_+	hypothetical protein	NA	NA	NA	NA
WP_035765685.1\|1987916_1988477_+	hypothetical protein	NA	NA	NA	NA
WP_035765687.1\|1988549_1989536_-	tyrosine recombinase XerC	A0A1B1SGM4	Mycobacterium_phage	1.2e-11	29.8
WP_003411430.1\|1990411_1990912_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_035761423.1\|1990979_1992521_-	thiol-activated cytolysin family protein	NA	NA	NA	NA
WP_035761422.1\|1992654_1994025_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_035761420.1\|1994101_1994374_-	hypothetical protein	NA	NA	NA	NA
WP_051119199.1\|1994376_1994574_-	hypothetical protein	NA	NA	NA	NA
WP_161618983.1\|1994718_1994871_-	hypothetical protein	NA	NA	NA	NA
WP_035761419.1\|1995073_1995277_-	helix-turn-helix domain-containing protein	A0A2H4J765	uncultured_Caudovirales_phage	1.6e-16	65.7
WP_035761417.1\|1995364_1996000_-	Ltp family lipoprotein	A0A097BY93	Leuconostoc_phage	3.3e-15	72.7
WP_035761416.1\|1996170_1997109_-	N-acetylmuramoyl-L-alanine amidase	Q24LG3	Clostridium_phage	5.8e-16	41.5
WP_051119196.1\|1997168_1997651_-\|holin	phage holin family protein	A0A2H4JCP5	uncultured_Caudovirales_phage	1.1e-23	42.7
WP_035761415.1\|1997718_1998723_-\|integrase	tyrosine-type recombinase/integrase	A0A0E3T6D9	Bacillus_phage	6.8e-15	28.1
WP_035764621.1\|1999005_2000040_-	acyltransferase family protein	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	4.7e-11	26.4
WP_161619005.1\|2000132_2000297_-	hypothetical protein	NA	NA	NA	NA
WP_141912193.1\|2000307_2001492_-	hypothetical protein	A0A1L2BYA7	Clostridium_phage	2.8e-52	74.1
WP_035761750.1\|2001507_2003196_-\|tail	phage tail protein	A0A1L2BYA1	Clostridium_phage	3.8e-159	56.1
WP_035761748.1\|2003195_2003900_-	phage-rlike protein	A0A1L2BYA2	Clostridium_phage	4.6e-66	51.5
WP_141912196.1\|2003899_2006806_-	hypothetical protein	A6XMK6	Bacillus_virus	4.7e-133	48.7
WP_153741809.1\|2006825_2006999_-	hypothetical protein	Q0H231	Geobacillus_phage	2.6e-07	54.0
WP_035764008.1\|2007028_2007370_-	hypothetical protein	A0A290GJX3	Caldibacillus_phage	1.4e-36	64.6
WP_035764010.1\|2007381_2007951_-\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	8.8e-60	61.8
WP_035764012.1\|2007952_2008282_-	hypothetical protein	A6XMK2	Bacillus_virus	8.7e-28	59.6
WP_035764014.1\|2008278_2008635_-	hypothetical protein	A0A290FZT5	Caldibacillus_phage	2.9e-21	50.0
WP_035764015.1\|2008627_2008948_-	hypothetical protein	A6XMK0	Bacillus_virus	1.9e-19	46.2
WP_035764017.1\|2008947_2009232_-	hypothetical protein	Q0H259	Geobacillus_phage	4.6e-33	71.0
WP_035764019.1\|2009244_2009529_-	hypothetical protein	A6XMJ7	Bacillus_virus	3.6e-06	41.6
WP_035764021.1\|2009542_2010955_-\|capsid	phage major capsid protein	A6XMJ6	Bacillus_virus	1.2e-118	59.5
WP_035764023.1\|2010944_2011523_-\|head,protease	HK97 family phage prohead protease	Q0H262	Geobacillus_phage	1.5e-70	73.0
WP_035764025.1\|2011515_2012721_-\|portal	phage portal protein	A6XMJ5	Bacillus_virus	4.0e-155	66.8
WP_141912201.1\|2012771_2013008_-	hypothetical protein	Q5ULN6	Lactobacillus_virus	9.3e-16	49.4
WP_035764108.1\|2013026_2014793_-\|terminase	terminase large subunit	A0A0S2SXJ7	Bacillus_phage	8.8e-268	75.6
2013377:2013393	attR	NA	NA	NA	NA
WP_035764027.1\|2014782_2015166_-\|terminase	P27 family phage terminase small subunit	Q0H265	Geobacillus_phage	1.2e-15	45.3
WP_035764028.1\|2015251_2015554_-	HNH endonuclease	A0A2I7SC48	Paenibacillus_phage	4.4e-26	62.4
WP_035764109.1\|2015708_2016203_-	hypothetical protein	I2E8Y5	Clostridium_phage	9.1e-29	39.9

DBSCAN-SWA_5

2019332 : 2026358

Clostridium_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035764034.1\|2019332_2019677_-	hypothetical protein	Q0SPI5	Clostridium_phage	1.2e-22	52.6
WP_035764036.1\|2019692_2020121_-	single-stranded DNA-binding protein	A1EAD1	Streptococcus_phage	3.7e-26	51.9
WP_035764038.1\|2020113_2020380_-	hypothetical protein	NA	NA	NA	NA
WP_035764040.1\|2020387_2021380_-	ParB/RepB/Spo0J family partition protein	H7BVD1	unidentified_phage	4.4e-22	29.6
WP_035764042.1\|2021385_2022153_-	ParA family protein	H7BUL8	unidentified_phage	2.3e-47	39.1
WP_035764044.1\|2022198_2022357_-	hypothetical protein	NA	NA	NA	NA
WP_035764111.1\|2022378_2022759_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	8.9e-16	43.5
WP_035764046.1\|2022751_2023609_-	hypothetical protein	Q0SPI6	Clostridium_phage	9.8e-47	40.5
WP_035764048.1\|2023834_2024074_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0K2CZ86	Paenibacillus_phage	9.8e-21	60.3
WP_155594176.1\|2024099_2024267_-	hypothetical protein	NA	NA	NA	NA
WP_035764050.1\|2024993_2025179_+	hypothetical protein	NA	NA	NA	NA
WP_035764052.1\|2025147_2025447_-	hypothetical protein	NA	NA	NA	NA
WP_161619002.1\|2025447_2025597_-	hypothetical protein	NA	NA	NA	NA
WP_035764054.1\|2025830_2026358_+	helix-turn-helix transcriptional regulator	A0A0A8WE86	Clostridium_phage	2.6e-13	37.3

DBSCAN-SWA_6

2470913 : 2509459

Clostridium_phage(28.57%)

tRNA,tail,capsid,portal,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003409709.1\|2470913_2471639_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.6e-34	35.2
WP_035765421.1\|2471744_2472434_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_002579702.1\|2472719_2474117_-	MATE family efflux transporter	NA	NA	NA	NA
WP_035765414.1\|2474722_2475616_-	radical SAM protein	NA	NA	NA	NA
WP_035765411.1\|2475782_2476421_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_035761758.1\|2476947_2477130_+	hypothetical protein	NA	NA	NA	NA
WP_035763536.1\|2477587_2478529_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_035763534.1\|2478584_2478872_-\|holin	phage holin family protein	A0A0A8WF70	Clostridium_phage	1.0e-11	39.6
WP_035763532.1\|2478891_2479104_-	hemolysin XhlA family protein	NA	NA	NA	NA
WP_051119393.1\|2479277_2480231_-	hypothetical protein	NA	NA	NA	NA
WP_035765758.1\|2480296_2481184_-	hypothetical protein	NA	NA	NA	NA
WP_141912213.1\|2481180_2481831_-	hypothetical protein	NA	NA	NA	NA
WP_035765624.1\|2481843_2482635_-	hypothetical protein	NA	NA	NA	NA
WP_035765620.1\|2482648_2484328_-\|tail	phage tail protein	A0A1L2BYA1	Clostridium_phage	6.9e-52	31.1
WP_035765617.1\|2484328_2485012_-\|tail	phage tail family protein	A0A2I4R672	Erysipelothrix_phage	5.7e-05	26.2
WP_051119392.1\|2485023_2488689_-	hypothetical protein	A5GYM8	Lactococcus_phage	2.8e-66	55.0
WP_035765614.1\|2488767_2489004_-	hypothetical protein	NA	NA	NA	NA
WP_035765610.1\|2489061_2489634_-	phage gp15 protein	A0A0A8WII3	Clostridium_phage	3.7e-42	49.5
WP_035765607.1\|2489633_2489957_-	hypothetical protein	A0A1J1JCF3	Escherichia_phage	3.5e-13	42.9
WP_035765604.1\|2490661_2491087_-	hypothetical protein	A0A1J1J8Y6	Escherichia_phage	2.8e-26	42.8
WP_162830849.1\|2491083_2491452_-\|capsid	capsid protein	NA	NA	NA	NA
WP_035765600.1\|2491442_2491766_-	hypothetical protein	NA	NA	NA	NA
WP_035765597.1\|2491775_2492057_-	hypothetical protein	NA	NA	NA	NA
WP_035765595.1\|2492073_2493018_-	hypothetical protein	A0A2H4JCM6	uncultured_Caudovirales_phage	5.5e-91	52.9
WP_035765592.1\|2493043_2493640_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_035765589.1\|2493742_2493946_-	hypothetical protein	NA	NA	NA	NA
WP_035765587.1\|2493991_2494264_-	hypothetical protein	A0A0C5K6K1	Enterococcus_phage	3.5e-22	56.2
WP_035765582.1\|2494260_2494533_-	DUF2829 domain-containing protein	G3MBC9	Bacillus_virus	7.7e-38	74.4
WP_035765579.1\|2494610_2495342_-	hypothetical protein	NA	NA	NA	NA
WP_035765577.1\|2495331_2496741_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	1.1e-55	33.5
WP_035765574.1\|2496756_2498481_-\|terminase	terminase	A0A1V0DZW7	Clostridioides_phage	8.8e-103	36.7
WP_035765571.1\|2498820_2499243_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_035765120.1\|2499626_2500070_-	hypothetical protein	A0A0A8WIL5	Clostridium_phage	1.5e-19	39.5
WP_156212520.1\|2500059_2500230_-	hypothetical protein	NA	NA	NA	NA
WP_035765122.1\|2500669_2501302_-	hypothetical protein	NA	NA	NA	NA
WP_035765124.1\|2501478_2501790_+	hypothetical protein	NA	NA	NA	NA
WP_035765127.1\|2501906_2502176_-	hypothetical protein	NA	NA	NA	NA
WP_035765129.1\|2502311_2502593_-	DUF4406 domain-containing protein	A0A1I9KFD3	Aeromonas_phage	8.5e-16	45.5
WP_035765132.1\|2502689_2505287_-	DNA primase	A0A1S5RG58	Helicobacter_phage	3.9e-06	51.9
WP_035765135.1\|2505315_2505966_-	hypothetical protein	NA	NA	NA	NA
WP_035765137.1\|2505968_2506271_-	hypothetical protein	NA	NA	NA	NA
WP_051119380.1\|2506230_2506545_-	hypothetical protein	NA	NA	NA	NA
WP_035765144.1\|2506525_2507188_-	hypothetical protein	F8UBF1	Clostridium_phage	4.2e-45	44.3
WP_035765145.1\|2507192_2507372_-	hypothetical protein	A0A0A7S0P6	Clostridium_phage	9.6e-13	58.9
WP_035765148.1\|2507450_2507873_-	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	6.2e-18	42.1
WP_035765150.1\|2507885_2508497_-	metal-dependent phosphohydrolase	A0A2H4J8L1	uncultured_Caudovirales_phage	1.0e-42	45.7
WP_035765153.1\|2508511_2509459_-	phage recombination protein Bet	A0A1P8BKG8	Lactococcus_phage	7.8e-37	46.4

DBSCAN-SWA_7

2512512 : 2517086

Clostridium_phage(33.33%)

integrase

attL 2508478:2508491|attR 2517563:2517576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2508478:2508491	attL	NA	NA	NA	NA
WP_113886166.1\|2512512_2512701_-	hypothetical protein	A0A0A7RTR9	Clostridium_phage	3.5e-05	41.7
WP_051119227.1\|2512804_2513500_-	ORF6N domain-containing protein	A0A0H3UZF1	Geobacillus_virus	3.1e-22	48.7
WP_035761617.1\|2513528_2513807_-	hypothetical protein	NA	NA	NA	NA
WP_141912216.1\|2513819_2514464_-	Rha family transcriptional regulator	A0A2H4J8K8	uncultured_Caudovirales_phage	7.5e-15	44.4
WP_035761550.1\|2514463_2514688_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_051119210.1\|2514927_2515464_+	helix-turn-helix transcriptional regulator	I3VYY8	Thermoanaerobacterium_phage	9.9e-05	41.8
WP_035761549.1\|2515474_2515960_+	hypothetical protein	A0A0A7RVV2	Clostridium_phage	9.2e-34	47.4
WP_035761548.1\|2515994_2517086_+\|integrase	site-specific integrase	J7KK80	Streptococcus_phage	2.6e-15	29.4
2517563:2517576	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2718106 : 2728197

Prochlorococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002579505.1\|2718106_2719615_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	1.8e-35	46.0
WP_003428500.1\|2719795_2720404_-	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	8.3e-24	37.5
WP_035762527.1\|2720391_2721396_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.5e-67	45.4
WP_024041384.1\|2721487_2722900_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-55	32.8
WP_024041383.1\|2723007_2723715_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	4.8e-47	44.3
WP_002579500.1\|2723714_2724194_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-27	43.7
WP_035762529.1\|2724450_2728197_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.2e-32	24.5

DBSCAN-SWA_9

2863682 : 2884496

Clostridium_phage(21.43%)

tail,capsid,portal,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035763534.1\|2863682_2863970_-\|holin	phage holin family protein	A0A0A8WF70	Clostridium_phage	1.0e-11	39.6
WP_035763532.1\|2863989_2864202_-	hemolysin XhlA family protein	NA	NA	NA	NA
WP_035764621.1\|2864379_2865414_-	acyltransferase family protein	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	4.7e-11	26.4
WP_161619005.1\|2865506_2865671_-	hypothetical protein	NA	NA	NA	NA
WP_141912224.1\|2865681_2866227_-	hypothetical protein	NA	NA	NA	NA
WP_035765624.1\|2866239_2867031_-	hypothetical protein	NA	NA	NA	NA
WP_035765620.1\|2867044_2868724_-\|tail	phage tail protein	A0A1L2BYA1	Clostridium_phage	6.9e-52	31.1
WP_035765617.1\|2868724_2869408_-\|tail	phage tail family protein	A0A2I4R672	Erysipelothrix_phage	5.7e-05	26.2
WP_051119392.1\|2869419_2873085_-	hypothetical protein	A5GYM8	Lactococcus_phage	2.8e-66	55.0
WP_035765614.1\|2873163_2873400_-	hypothetical protein	NA	NA	NA	NA
WP_035765610.1\|2873457_2874030_-	phage gp15 protein	A0A0A8WII3	Clostridium_phage	3.7e-42	49.5
WP_035765607.1\|2874029_2874353_-	hypothetical protein	A0A1J1JCF3	Escherichia_phage	3.5e-13	42.9
WP_035765604.1\|2875057_2875483_-	hypothetical protein	A0A1J1J8Y6	Escherichia_phage	2.8e-26	42.8
WP_162830849.1\|2875479_2875848_-\|capsid	capsid protein	NA	NA	NA	NA
WP_035765600.1\|2875838_2876162_-	hypothetical protein	NA	NA	NA	NA
WP_035765597.1\|2876171_2876453_-	hypothetical protein	NA	NA	NA	NA
WP_035765595.1\|2876469_2877414_-	hypothetical protein	A0A2H4JCM6	uncultured_Caudovirales_phage	5.5e-91	52.9
WP_035765592.1\|2877439_2878036_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_035765589.1\|2878138_2878342_-	hypothetical protein	NA	NA	NA	NA
WP_035765587.1\|2878387_2878660_-	hypothetical protein	A0A0C5K6K1	Enterococcus_phage	3.5e-22	56.2
WP_035765582.1\|2878656_2878929_-	DUF2829 domain-containing protein	G3MBC9	Bacillus_virus	7.7e-38	74.4
WP_035765579.1\|2879006_2879738_-	hypothetical protein	NA	NA	NA	NA
WP_035765577.1\|2879727_2881137_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	1.1e-55	33.5
WP_035765574.1\|2881152_2882877_-\|terminase	terminase	A0A1V0DZW7	Clostridioides_phage	8.8e-103	36.7
WP_035765571.1\|2883216_2883639_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_035761306.1\|2884019_2884496_-	sigma-70 family RNA polymerase sigma factor	A0A1V0E028	Clostridioides_phage	4.7e-06	28.9

DBSCAN-SWA_10

2892968 : 2898726

Clostridium_phage(50.0%)

integrase

attL 2893041:2893058|attR 2905986:2906003

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035761333.1\|2892968_2893610_-	AAA family ATPase	A0A2I7R7K9	Vibrio_phage	1.0e-24	34.0
2893041:2893058	attL	NA	NA	NA	NA
WP_160295187.1\|2893621_2893768_-	hypothetical protein	NA	NA	NA	NA
WP_035761335.1\|2893776_2894289_-	host-nuclease inhibitor Gam family protein	A0A0A7S0G6	Clostridium_phage	1.5e-39	48.8
WP_035761337.1\|2894293_2894716_-	hypothetical protein	NA	NA	NA	NA
WP_162830833.1\|2894774_2894942_-	hypothetical protein	NA	NA	NA	NA
WP_046057419.1\|2894943_2895129_-	hypothetical protein	A0A0A7RTR9	Clostridium_phage	3.4e-05	41.7
WP_052707832.1\|2895236_2895968_-	Rha family transcriptional regulator	A0A2H4J8K8	uncultured_Caudovirales_phage	1.0e-15	43.3
WP_035761602.1\|2896052_2896256_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_051119221.1\|2896507_2896867_+	transcriptional regulator	NA	NA	NA	NA
WP_035761601.1\|2897126_2897345_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_035761600.1\|2897495_2897786_+	helix-turn-helix transcriptional regulator	A0A0A7S0F1	Clostridium_phage	1.6e-20	48.9
WP_035761603.1\|2897823_2898726_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	5.5e-32	27.6
2905986:2906003	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP019717

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019717_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019717_1

331581-331692

Orphan

Consensus_repeat	Method
TTACTAAAATCACCGTTCGCAAGGGTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019717_1

>merge|NZ_AP019717|1|331581-331692|CRISPRCasFinder
GACCAAAACCCACCGTTCGCGAGGGTAAAAAACAAAATTCAACTCCTTTTTACTATTATTTTTATTAAAAATTGCGTTTCGTGACTTGTATTTCCGTTCGCAAGGGTAAAAA

>NZ_AP019717|1|1|331581-331692|CRISPRCasFinder
GACCAAAACCCACCGTTCGCGAGGGTAAAA	AACAAAATTCAACTCCTTTTTACTATTATTTTTATTAAAAATTGCGTTTCG
TGACTTGTATTTCCGTTCGCAAGGGTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019717.1\|WP_002581759.1\|326678_327449_-\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
NZ_AP019717.1\|WP_002581763.1\|323102_323579_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_AP019717.1\|WP_002581761.1\|324510_325257_-\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NZ_AP019717.1\|WP_003430651.1\|327709_328633_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP019717.1\|WP_002581752.1\|338237_339389_+\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_AP019717.1\|WP_002581755.1\|334210_335164_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163
NZ_AP019717.1\|WP_002581756.1\|332144_333257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_002581749.1\|340993_342208_-\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|223857
NZ_AP019717.1\|WP_002581751.1\|339392_340085_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_035763991.1\|343200_345111_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_AP019717.1\|WP_035764614.1\|325826_326669_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_AP019717.1\|WP_035761580.1\|336428_337403_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_AP019717.1\|WP_002581765.1\|321577_322441_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_AP019717.1\|WP_003413593.1\|329084_329573_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_035763990.1\|345230_346079_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_AP019717.1\|WP_002581754.1\|335312_336320_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319265
NZ_AP019717.1\|WP_003411363.1\|329657_331121_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_002581762.1\|324194_324509_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494
NZ_AP019717.1\|WP_003430862.1\|340155_340665_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_AP019717.1\|WP_002581764.1\|322501_323047_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463

Protein	Function_ID	Function_description	E-value
NZ_AP019717.1\|WP_002581759.1\|326678_327449_-\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	1.92547e-35
NZ_AP019717.1\|WP_002581763.1\|323102_323579_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	5.12289e-96
NZ_AP019717.1\|WP_002581761.1\|324510_325257_-\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	6.40713e-110
NZ_AP019717.1\|WP_003430651.1\|327709_328633_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.31237e-43
NZ_AP019717.1\|WP_002581752.1\|338237_339389_+\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	3.66073e-26
NZ_AP019717.1\|WP_035763990.1\|345230_346079_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	4.81334e-10
NZ_AP019717.1\|WP_002581749.1\|340993_342208_-\|sodium/glutamate-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	5.38216e-124
NZ_AP019717.1\|WP_035763991.1\|343200_345111_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_AP019717.1\|WP_035764614.1\|325826_326669_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	4.42525e-97
NZ_AP019717.1\|WP_002581764.1\|322501_323047_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	5.51449e-76
NZ_AP019717.1\|WP_002581765.1\|321577_322441_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	2.28753e-65
NZ_AP019717.1\|WP_002581755.1\|334210_335164_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	2.94475e-14
NZ_AP019717.1\|WP_002581754.1\|335312_336320_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319265	cd16408, ParB_N_like, ParB N-terminal, parA -binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	2.23746e-17
NZ_AP019717.1\|WP_002581762.1\|324194_324509_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	3.26606e-24
NZ_AP019717.1\|WP_003430862.1\|340155_340665_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	7.70205e-06
NZ_AP019717.1\|WP_035761580.1\|336428_337403_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	9.41649e-48

>NZ_AP019717.1|WP_003411363.1|329657_331121_-|hypothetical-protein
MDKDDRLFKEDMIKLFKNVYEVLVKKEKFTDFYETLDNDLANLKDTGKREVIYKNLTNSIKRTKTRWLNKYVNGSNNSLSEDIEYAEHFYKRVLEGVYEPDKFVMIYGVNNIDEYKKKMFNELYTWRDNEDALLSSYKYIGTFQKRSITLAFRSDILKLYYDFLTNNAKSVITIPSVLSNFSIDTTNKKDYLKDDEKEFLDDNLSLEGTIDRLIVNKENQQKLLMKLEKQVYLRIEEGKDSLDIITQIALLKAIKQLNSLDTRIISHYYTHFYNIVADKSVDKYIGDLVSELGLSDSKKNTDAVIKSLLKIGSIRLESENYEGREIKGTLFEVSISERDGRKFAQVFLGGFLRTLIIMDSSFNFNKDVFDLLSNDAQQIAIWLQNRRLKMVLESEDFKDVIAIQRFTDAILMSTKSIYKKRDRIINALDELKQYKLIVKNYEYIKKNYEFVISYIELPESVIKKIKNKEFKTGELIEGQIHADYTVE
>NZ_AP019717.1|WP_003413593.1|329084_329573_+|hypothetical-protein
MFICICFLKHIYENDSIPTDKKHIERYLYKLLIYFNFKLYVATALIIYNTKQKIINTSIILKIFKILNFSLTILEYIIQNKKIIPITFKSFLIFFIVSLLFYIVSHIICYHFFPKYHIIFLKFFIKITFVWLFSQISIVYPKIYSSNNLIVSKIIIEFFLYI
>NZ_AP019717.1|WP_003430651.1|327709_328633_-|HAMP-domain-containing-histidine-kinase
MEILKTPQEYLYKNLVKKSEDLEATILELKKTIDDKNIIYKDYEKRTKHEEVKNEVLANISHEFKTPVNVIYSAVQTQDLIKNTANIEELLKYNKIIKQNCNRLTRLINNFIDTTRFEKENVKTEFTCENIVEITEYLTMCVVPFANSKKLNLIFDTSDEELYSLIDKELYDRMILNLLSNAIKYSRINGNIKVMIKDDNKFIKITIEDDGIGIDKYHLKDIFSIFERVDKSYSRNTEGSGLGLNIAKKIIDIHNGNISIESIKEKGTSVIVSIPKCSEKYVDNISHRLQDNTYVKYEVEVEMSDIY
>NZ_AP019717.1|WP_002581759.1|326678_327449_-|cobalt-ECF-transporter-T-component-CbiQ
MERKIDSYAYKSKLRKINPAFKVIFAFLTLLICIIADNIYVSLAIIVSMGFITIFKGGIKFHEYMSLMSIPVVFMILGSIAIAFGVSMSPIGDYNLHLCGFYLYTSDENILKTMEIVMKAFGAISAMYMMTLSTNTSEIISVLRKAHIPKIIIELMNMIYRFIFILIDVQCKMKNSAQSRLGYIDFKTSCYSFGSTASNLLIVSLKKANTYYNAMESRCYNGDMLFLEEEKKVKTIHVVLACIYFSILIFIWYIAK
>NZ_AP019717.1|WP_035764614.1|325826_326669_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MDDKIKEIILQIKELCYSYTGEKNTLNNINLNIHRGEKIAVLGSNGAGKSTFFLNINGVLTPKNGKIIYKGKAITKKNLNELRKNIGIVFQDADNQIIASTVLAEVSFGPMNLKLPKDEVIKRVNEALDYMNISEFKERPPHYLSGGEKKRVSIADIIAMKSEVIIFDEPTAALDPLNAEMLEEVLKKLSLENKTLLISTHDVDFAYRWADRVVVFSKGGIIGDGTPLEIFKNEEILKNSNLKRPIMLDVYETLIEKRILTNDNLYPKNINEFKKIFNKY
>NZ_AP019717.1|WP_002581761.1|324510_325257_-|energy-coupling-factor-ABC-transporter-permease
MKNQNKIIKIAILLVLMFGITPAANAMHIMEGYLPAKYCIGWGIICLPFLIGGFLSIKKSLDKDRKSVTILAMAGAFIFVISSLKIPSVTGSCSHMTGTGLGAILFGPLAVSVLGIIVLIFQAILLAHGGITTLGANTFSMSIAGPLLSFGLYKLCVKLKINRKVSVFIAAALGDLFTYCITSFQLAMAYPSPEGGVFASAVKFLGVFAPTQLPLAIIEGILTVIVIIGLETYAKSELTGLGFLKEEK
>NZ_AP019717.1|WP_002581762.1|324194_324509_-|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MTKNKKTVIILLIIALAIAIIPLFALKGAEFGGSDDAGSVMVEEINGEAYEPWFTPVMETWIDGELPGEVESLLFCVQTGIGVGIFAFFMGRFVERKKWENKKE
>NZ_AP019717.1|WP_002581763.1|323102_323579_-|glutathione-peroxidase
MEFYDLSATKMNGRKVSMEEYRGKVVLVVNTASKCGLTPQFTELEELYNEYKDNGFEVLGFPCNQFAKQDPGSNKEIGEFCLRNYGVSFTMFEKIDVNGQNTHPIYKFLKNEAGGLIGRDIKWNFTKFLIDSEGNVIKRYSPITKPSSIKKDIYSLIK
>NZ_AP019717.1|WP_002581764.1|322501_323047_-|glutathione-peroxidase
MNIYDYKYKEISGKEVLLEDYRNKAIVIVNIASKCGFTPQLEDLQKIYEKYKEHGFEIIGFPSNQFNEQSPGSNSDLDIFCKRNYGVTFNLSEKVDVRGSNSHPLFNYLTEKCPFKGFNKENITEKMLYSITEENYPEYLVGDSIKWNFTKFLVDKNGNVVKRYESHIEPLDMIKDIEELL
>NZ_AP019717.1|WP_002581765.1|321577_322441_-|NAD(P)/FAD-dependent-oxidoreductase
MERYDLAIIGSGPAGVSAALNAKIRKKNFIIFGSKELSNKLTKAEKINNYLGFYGKSGAQIRDEFIKHMESMDISITEEKINNIYAMGDYFSLIANDKMYEASAIILATGVNFGRPFKGEEELLGKGVGYCATCDAPLYKDKIVTIIAYNKHEEDEVNFISTIASKVYYIPMYKEKVEVDEKVEIINDMPVEIIGKERVEKLILKNSEIETDGIFILRDSVSPSQLVPGLELDENHVKVDRKMTTNLQGCFAAGDIVGAPYQYIKAAGEGNIAALSAVSYIDNLNKK
>NZ_AP019717.1|WP_002581756.1|332144_333257_+|hypothetical-protein
MSTKLSNEHITRISKDCNEYKILDVYIILAHISSEVKSGKYLIQSYSSKKSDLINIVHKYCPKAAYKTIHNCIEKLEFMNILIYDESLCAWCLKNMENMTKSKDEAETLEERETLTGYTNIRKFFLTDEFFNMKAREKRVIIYICQLLDSKASRNYKNISINLLKFNSSWLKILKTKCKYYAKNTIENMLEKYKDIFNDFSSLVREKDIAPKTVTSFKFTFTCESLNNRNSEEDMLELIKLKNPKEYSLVKDKVEFAQITLSKQKIMHIVRAISTIKEWFLKERVTQLIINKYIAIQIHHSRENIKSLPAYSAAVVKAVVNEYNDFKEKFNKHSSDSHINNYYDTYIENDSFSSTVTEDIQYALSMLKAV
>NZ_AP019717.1|WP_002581755.1|334210_335164_+|tyrosine-type-recombinase/integrase
MNITKKQFEEFPKVDYIFGEYMYKYKMHMDKEYRCFSKDDTFIDVKKIKAWQHSYKINYYNIMLFDKYLYMQYKDTDFSIRDIREIHIQEFLDFSYNVMKNKPITINQKLVSLRMIMKYICKYYNVLPYNIALMVPKLKIDSVKPTSISYSDIKKILSILREKNYGIRDVCICKIIMTTGMKITSVFNMKVNDVDLNNRLLKYDNLGKEFFYPIQDTLYNDLCSYMDFRSSINPKCNNLFVNSSGKPKNIRSFQIAFRNAVIKADLDEAYTAQNLRASFLYEMGRILNDENELSELTDQKIVKQYIALKENHFNDII
>NZ_AP019717.1|WP_002581754.1|335312_336320_-|ParB-N-terminal-domain-containing-protein
MVKKNNNSTFNLRTNRNTEKKSSGIASSFFSSNTNETHVDNDISHTSDAPNYTDSIVNHLVNASSGLDSVLVNIDDLYSAPDDWNFYDRLPAGKMQELIESIISIGLQEPVIVWKKDDSGKYMILSGHNRVHAYKILCENQDSEKYSKIHAVIKDKNLSEEEAKEIIVDTNWVQRQLTTIQKARSINFKYRKLKKDSLEKKLKFDINSVIADEYQITSRQLISYKSLGNLTETAQNAVDNAKLSIKAGVAISKLMPEDQDYIINNFDISILNKNYSKIKSACDSESGVVNKSKLSSLLTEEELGSITIKVPIEYKDSLIAEIEALKKKYNIKKIN
>NZ_AP019717.1|WP_035761580.1|336428_337403_-|AAA-family-ATPase
MKGKLYYKLIKDKRNELDITQKQICDELNIQLEEYKKMESGDFIPKKSSLNKICTYLKLDINEIYMENFRDTKVVSVMSNKGGVGKTSVTSSVSFCLAELGYKVLCIDADMQGNLTHSFNLETDEEKNLAIALKNELDLKDCIINSQYENLDFVVYNTALSAIDMLMFTKNAREYILKRILTNTINEGLYDFVVIDTNPSLSILNFNVINVTNYCIVPVQLGAFGLEGVGILLNFIDDAKQFNPNFIDYKLVINNYDSRKSITKKSQEWLEENYGDILLESIIRVDTNIENAQVGSMPVLAYNSNCRISNEFRLLTKEILKIIK
>NZ_AP019717.1|WP_002581752.1|338237_339389_+|ParM/StbA-family-protein
MKKELYIAVDPGFDTVKVIANGQFFKFPFNTEKTDEKRISNMTVADDFILYRNKDNETWRIGQYARELIFEKKDSSDIEDKMKSFYSEKRFVSDEFTIGLRTAIAMAVLRLNLYKHLKDIKIYIMVALPHSVRDNYSTQVKSILCGSHDYFVKIGKEEEEEYTFVIEEDNIFTVSQTVASILGETSDDEGNIDEDKFYYLSDGPTLVIDGGFYTIGEVAVDRGGSINEEKTFSDINHAMKNINMEIAKELENQRPDIKYYVIEYLMTKNEGKLKYLKNGKAQIIDLNVLKKEKIKEMSSRFIESLNAKYNNLLDFNYVLVTGGTGARYYEHLKEYYVGKGIVEEDRLILTNNILNGKRFDIEYAIAAGAYKGLKGKVAVLVEQ
>NZ_AP019717.1|WP_002581751.1|339392_340085_+|hypothetical-protein
MKSERIGLRFSKKDEDIISWFLMLRENKIEQSFAVKALLKAFFLQETINGGSIKIRHNVKMEPTSIAINEIDLNDDIIKMKTKGIKLASFTKDIIRLYINISDIDKAPQISELQQIHTKYKLKYLNNIVYEQSQEIKVNIESLPEFKKNIINNIKNENNMIAEESNSNDKDINSNYENLVKEKSNMDMNFQSSSKITFFDEESKNLQEVSKSEKDKKVKSKKRNPLLAQI
>NZ_AP019717.1|WP_003430862.1|340155_340665_+|helix-turn-helix-transcriptional-regulator
MNYKYMNELKKFDNIDEFEKMDFVLLSNDVISNTIDNNLQKLLFAKRITISELSRKTGVSKQVISSSIVKNTKIDLDSAIKISRVLKTPIEDIFMLKKNSWVDVYIVNGKTVYLNMKTLTMVSSEEKNMYIKTHKVKYYNPIDDCLSYKKLNENYNELFIKVGKRIEQL
>NZ_AP019717.1|WP_002581749.1|340993_342208_-|sodium/glutamate-symporter
MELNFNIYETMALVSIVLYIGKYIRNKFSILSQYCIPPSVIGGFTFALLILIFKLTNICVINLDTLLQNIFMTAFFTSIGFTASIKVLKQGGIKVITFLCLAILLVILQNIVGVTLASIFKLTPLLGLCTGSIPMIGGHGTAGSFGPILENLGITGATTVSVASATFGLIMGSIIGGLVAKALIHNYKLKTIRDEYSEKPPSEVGDYNEENHNILSFKKLTNGACLLFIAMGIGSVVSDFIQKTGLTFPSYIGAMIVAAIIRNIYDFTDKEIVEKEIETLGGLSLSFFLTMALMGLKLWQLFDLALPLMIMLFAQVILVGLFAYFITYKVMGKNYEAAVFASATCGFGMGATPNAIANMDELTNRYGFVHTPYFVVPIVGCLFIDFVNSGIITIFINFISYNIY
>NZ_AP019717.1|WP_035763991.1|343200_345111_+|threonine--tRNA-ligase
MLINIKLKDGSIKEIEDNSTVFDLAQSISRNLGKSALVGEVNGCLVDLNYKLKNNDEVNILSDDSEKAVEVIRHSSAHIMAQAVKRLYKNAKLAIGPSIANGFYYDFDIDTTIIKEDLEKIEKEMNKIVKENLKFERIDVSKEEALKIMKDNDEIYKVELINDLPEGEKISLYKQGDYIDLCRGPHIPSTKYAKAFKLISVAGAYWRGNEKNKMLQRVYGIAFSNLKELEIHLHNLEEAKKRDHRKLGKELNLFTFAEEGPGFPFFLPKGVILKNSLIDFWRKIHYEAGYVEVETPIMLNKKLWETSGHWYHYKENMYTSMIDDEEFALKPMNCPGGMIVYKSDSHSYRDFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPEQIKSEIKGVVELIDKVYSIFGFKYHVELSTRPEDSMGSDEEWQMAEDSLRGALDELNLQYVINEGDGAFYGPKIDFHLEDSIGRTWQCGTIQLDFQLPQRFELEYVGSDNEKHRPIVIHRVIFGSIERFIGILIEHFAGKFPTWLAPVQVKVLPISDKFNNYCDEVVKQFNENGIRVEIDQRNEKIGYKIREARNERVPYIVIIGEKEEEEGNVSLRSRKNGDEGSINVRDLIERINNEIKNKYI
>NZ_AP019717.1|WP_035763990.1|345230_346079_-|pentapeptide-repeat-containing-protein
MKYTIDELYSKELKCNCENCFGLCCTALFFSACDGFPQNKDAGKPCINLKQDFTCSIHNTLLKKGLKGCISYECFGAGQKIAQKTFNKISWRKDPQSASKMFDTFLIIKQIHEMLWYLVQSYTLEKNNKISSQIESLIDDTIKVSLWDVDKLLNLDLESYRDKVNVYLKATSETIRKKFKLSSSKSLSTSKKQIQGKNFLGKDLTKYNLCGADFRGALLIASNLSYSDLSGADFIGADLRDTNLSSSDLSRSIFLTQAQINSAKGDLKTKLPPMIVRPSYWI

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Crispr_ID: NZ_AP019717_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019717_2

331775-331865

Orphan

Consensus_repeat	Method
TTACTAAAATCACCGTTCGCAAGGGTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019717_2

>merge|NZ_AP019717|2|331775-331865|CRISPRCasFinder
TTACTAAAATCACCGTTCGCAAGGGTAAAATACTTATAAACGTGATAACTTGGTTCACAAGTTACAAAAATCACCGTTCGCAAGGGTAAAA

>NZ_AP019717|2|2|331775-331865|CRISPRCasFinder
TTACTAAAATCACCGTTCGCAAGGGTAAAA	TACTTATAAACGTGATAACTTGGTTCACAAG
TTACAAAAATCACCGTTCGCAAGGGTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019717.1\|WP_002581759.1\|326678_327449_-\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
NZ_AP019717.1\|WP_002581763.1\|323102_323579_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_AP019717.1\|WP_002581761.1\|324510_325257_-\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NZ_AP019717.1\|WP_003430651.1\|327709_328633_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP019717.1\|WP_002581752.1\|338237_339389_+\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_AP019717.1\|WP_002581755.1\|334210_335164_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163
NZ_AP019717.1\|WP_002581756.1\|332144_333257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_002581749.1\|340993_342208_-\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|223857
NZ_AP019717.1\|WP_002581751.1\|339392_340085_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_035763991.1\|343200_345111_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_AP019717.1\|WP_035764614.1\|325826_326669_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_AP019717.1\|WP_035761580.1\|336428_337403_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_AP019717.1\|WP_002581765.1\|321577_322441_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_AP019717.1\|WP_003413593.1\|329084_329573_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_035763990.1\|345230_346079_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_AP019717.1\|WP_002581754.1\|335312_336320_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319265
NZ_AP019717.1\|WP_003411363.1\|329657_331121_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019717.1\|WP_002581762.1\|324194_324509_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494
NZ_AP019717.1\|WP_003430862.1\|340155_340665_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_AP019717.1\|WP_002581764.1\|322501_323047_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463

Protein	Function_ID	Function_description	E-value
NZ_AP019717.1\|WP_002581759.1\|326678_327449_-\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	1.92547e-35
NZ_AP019717.1\|WP_002581763.1\|323102_323579_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	5.12289e-96
NZ_AP019717.1\|WP_002581761.1\|324510_325257_-\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	6.40713e-110
NZ_AP019717.1\|WP_003430651.1\|327709_328633_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.31237e-43
NZ_AP019717.1\|WP_002581752.1\|338237_339389_+\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	3.66073e-26
NZ_AP019717.1\|WP_035763990.1\|345230_346079_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	4.81334e-10
NZ_AP019717.1\|WP_002581749.1\|340993_342208_-\|sodium/glutamate-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	5.38216e-124
NZ_AP019717.1\|WP_035763991.1\|343200_345111_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_AP019717.1\|WP_035764614.1\|325826_326669_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	4.42525e-97
NZ_AP019717.1\|WP_002581764.1\|322501_323047_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	5.51449e-76
NZ_AP019717.1\|WP_002581765.1\|321577_322441_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	2.28753e-65
NZ_AP019717.1\|WP_002581755.1\|334210_335164_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	2.94475e-14
NZ_AP019717.1\|WP_002581754.1\|335312_336320_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319265	cd16408, ParB_N_like, ParB N-terminal, parA -binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	2.23746e-17
NZ_AP019717.1\|WP_002581762.1\|324194_324509_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	3.26606e-24
NZ_AP019717.1\|WP_003430862.1\|340155_340665_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	7.70205e-06
NZ_AP019717.1\|WP_035761580.1\|336428_337403_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	9.41649e-48

>NZ_AP019717.1|WP_003411363.1|329657_331121_-|hypothetical-protein
MDKDDRLFKEDMIKLFKNVYEVLVKKEKFTDFYETLDNDLANLKDTGKREVIYKNLTNSIKRTKTRWLNKYVNGSNNSLSEDIEYAEHFYKRVLEGVYEPDKFVMIYGVNNIDEYKKKMFNELYTWRDNEDALLSSYKYIGTFQKRSITLAFRSDILKLYYDFLTNNAKSVITIPSVLSNFSIDTTNKKDYLKDDEKEFLDDNLSLEGTIDRLIVNKENQQKLLMKLEKQVYLRIEEGKDSLDIITQIALLKAIKQLNSLDTRIISHYYTHFYNIVADKSVDKYIGDLVSELGLSDSKKNTDAVIKSLLKIGSIRLESENYEGREIKGTLFEVSISERDGRKFAQVFLGGFLRTLIIMDSSFNFNKDVFDLLSNDAQQIAIWLQNRRLKMVLESEDFKDVIAIQRFTDAILMSTKSIYKKRDRIINALDELKQYKLIVKNYEYIKKNYEFVISYIELPESVIKKIKNKEFKTGELIEGQIHADYTVE
>NZ_AP019717.1|WP_003413593.1|329084_329573_+|hypothetical-protein
MFICICFLKHIYENDSIPTDKKHIERYLYKLLIYFNFKLYVATALIIYNTKQKIINTSIILKIFKILNFSLTILEYIIQNKKIIPITFKSFLIFFIVSLLFYIVSHIICYHFFPKYHIIFLKFFIKITFVWLFSQISIVYPKIYSSNNLIVSKIIIEFFLYI
>NZ_AP019717.1|WP_003430651.1|327709_328633_-|HAMP-domain-containing-histidine-kinase
MEILKTPQEYLYKNLVKKSEDLEATILELKKTIDDKNIIYKDYEKRTKHEEVKNEVLANISHEFKTPVNVIYSAVQTQDLIKNTANIEELLKYNKIIKQNCNRLTRLINNFIDTTRFEKENVKTEFTCENIVEITEYLTMCVVPFANSKKLNLIFDTSDEELYSLIDKELYDRMILNLLSNAIKYSRINGNIKVMIKDDNKFIKITIEDDGIGIDKYHLKDIFSIFERVDKSYSRNTEGSGLGLNIAKKIIDIHNGNISIESIKEKGTSVIVSIPKCSEKYVDNISHRLQDNTYVKYEVEVEMSDIY
>NZ_AP019717.1|WP_002581759.1|326678_327449_-|cobalt-ECF-transporter-T-component-CbiQ
MERKIDSYAYKSKLRKINPAFKVIFAFLTLLICIIADNIYVSLAIIVSMGFITIFKGGIKFHEYMSLMSIPVVFMILGSIAIAFGVSMSPIGDYNLHLCGFYLYTSDENILKTMEIVMKAFGAISAMYMMTLSTNTSEIISVLRKAHIPKIIIELMNMIYRFIFILIDVQCKMKNSAQSRLGYIDFKTSCYSFGSTASNLLIVSLKKANTYYNAMESRCYNGDMLFLEEEKKVKTIHVVLACIYFSILIFIWYIAK
>NZ_AP019717.1|WP_035764614.1|325826_326669_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MDDKIKEIILQIKELCYSYTGEKNTLNNINLNIHRGEKIAVLGSNGAGKSTFFLNINGVLTPKNGKIIYKGKAITKKNLNELRKNIGIVFQDADNQIIASTVLAEVSFGPMNLKLPKDEVIKRVNEALDYMNISEFKERPPHYLSGGEKKRVSIADIIAMKSEVIIFDEPTAALDPLNAEMLEEVLKKLSLENKTLLISTHDVDFAYRWADRVVVFSKGGIIGDGTPLEIFKNEEILKNSNLKRPIMLDVYETLIEKRILTNDNLYPKNINEFKKIFNKY
>NZ_AP019717.1|WP_002581761.1|324510_325257_-|energy-coupling-factor-ABC-transporter-permease
MKNQNKIIKIAILLVLMFGITPAANAMHIMEGYLPAKYCIGWGIICLPFLIGGFLSIKKSLDKDRKSVTILAMAGAFIFVISSLKIPSVTGSCSHMTGTGLGAILFGPLAVSVLGIIVLIFQAILLAHGGITTLGANTFSMSIAGPLLSFGLYKLCVKLKINRKVSVFIAAALGDLFTYCITSFQLAMAYPSPEGGVFASAVKFLGVFAPTQLPLAIIEGILTVIVIIGLETYAKSELTGLGFLKEEK
>NZ_AP019717.1|WP_002581762.1|324194_324509_-|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MTKNKKTVIILLIIALAIAIIPLFALKGAEFGGSDDAGSVMVEEINGEAYEPWFTPVMETWIDGELPGEVESLLFCVQTGIGVGIFAFFMGRFVERKKWENKKE
>NZ_AP019717.1|WP_002581763.1|323102_323579_-|glutathione-peroxidase
MEFYDLSATKMNGRKVSMEEYRGKVVLVVNTASKCGLTPQFTELEELYNEYKDNGFEVLGFPCNQFAKQDPGSNKEIGEFCLRNYGVSFTMFEKIDVNGQNTHPIYKFLKNEAGGLIGRDIKWNFTKFLIDSEGNVIKRYSPITKPSSIKKDIYSLIK
>NZ_AP019717.1|WP_002581764.1|322501_323047_-|glutathione-peroxidase
MNIYDYKYKEISGKEVLLEDYRNKAIVIVNIASKCGFTPQLEDLQKIYEKYKEHGFEIIGFPSNQFNEQSPGSNSDLDIFCKRNYGVTFNLSEKVDVRGSNSHPLFNYLTEKCPFKGFNKENITEKMLYSITEENYPEYLVGDSIKWNFTKFLVDKNGNVVKRYESHIEPLDMIKDIEELL
>NZ_AP019717.1|WP_002581765.1|321577_322441_-|NAD(P)/FAD-dependent-oxidoreductase
MERYDLAIIGSGPAGVSAALNAKIRKKNFIIFGSKELSNKLTKAEKINNYLGFYGKSGAQIRDEFIKHMESMDISITEEKINNIYAMGDYFSLIANDKMYEASAIILATGVNFGRPFKGEEELLGKGVGYCATCDAPLYKDKIVTIIAYNKHEEDEVNFISTIASKVYYIPMYKEKVEVDEKVEIINDMPVEIIGKERVEKLILKNSEIETDGIFILRDSVSPSQLVPGLELDENHVKVDRKMTTNLQGCFAAGDIVGAPYQYIKAAGEGNIAALSAVSYIDNLNKK
>NZ_AP019717.1|WP_002581756.1|332144_333257_+|hypothetical-protein
MSTKLSNEHITRISKDCNEYKILDVYIILAHISSEVKSGKYLIQSYSSKKSDLINIVHKYCPKAAYKTIHNCIEKLEFMNILIYDESLCAWCLKNMENMTKSKDEAETLEERETLTGYTNIRKFFLTDEFFNMKAREKRVIIYICQLLDSKASRNYKNISINLLKFNSSWLKILKTKCKYYAKNTIENMLEKYKDIFNDFSSLVREKDIAPKTVTSFKFTFTCESLNNRNSEEDMLELIKLKNPKEYSLVKDKVEFAQITLSKQKIMHIVRAISTIKEWFLKERVTQLIINKYIAIQIHHSRENIKSLPAYSAAVVKAVVNEYNDFKEKFNKHSSDSHINNYYDTYIENDSFSSTVTEDIQYALSMLKAV
>NZ_AP019717.1|WP_002581755.1|334210_335164_+|tyrosine-type-recombinase/integrase
MNITKKQFEEFPKVDYIFGEYMYKYKMHMDKEYRCFSKDDTFIDVKKIKAWQHSYKINYYNIMLFDKYLYMQYKDTDFSIRDIREIHIQEFLDFSYNVMKNKPITINQKLVSLRMIMKYICKYYNVLPYNIALMVPKLKIDSVKPTSISYSDIKKILSILREKNYGIRDVCICKIIMTTGMKITSVFNMKVNDVDLNNRLLKYDNLGKEFFYPIQDTLYNDLCSYMDFRSSINPKCNNLFVNSSGKPKNIRSFQIAFRNAVIKADLDEAYTAQNLRASFLYEMGRILNDENELSELTDQKIVKQYIALKENHFNDII
>NZ_AP019717.1|WP_002581754.1|335312_336320_-|ParB-N-terminal-domain-containing-protein
MVKKNNNSTFNLRTNRNTEKKSSGIASSFFSSNTNETHVDNDISHTSDAPNYTDSIVNHLVNASSGLDSVLVNIDDLYSAPDDWNFYDRLPAGKMQELIESIISIGLQEPVIVWKKDDSGKYMILSGHNRVHAYKILCENQDSEKYSKIHAVIKDKNLSEEEAKEIIVDTNWVQRQLTTIQKARSINFKYRKLKKDSLEKKLKFDINSVIADEYQITSRQLISYKSLGNLTETAQNAVDNAKLSIKAGVAISKLMPEDQDYIINNFDISILNKNYSKIKSACDSESGVVNKSKLSSLLTEEELGSITIKVPIEYKDSLIAEIEALKKKYNIKKIN
>NZ_AP019717.1|WP_035761580.1|336428_337403_-|AAA-family-ATPase
MKGKLYYKLIKDKRNELDITQKQICDELNIQLEEYKKMESGDFIPKKSSLNKICTYLKLDINEIYMENFRDTKVVSVMSNKGGVGKTSVTSSVSFCLAELGYKVLCIDADMQGNLTHSFNLETDEEKNLAIALKNELDLKDCIINSQYENLDFVVYNTALSAIDMLMFTKNAREYILKRILTNTINEGLYDFVVIDTNPSLSILNFNVINVTNYCIVPVQLGAFGLEGVGILLNFIDDAKQFNPNFIDYKLVINNYDSRKSITKKSQEWLEENYGDILLESIIRVDTNIENAQVGSMPVLAYNSNCRISNEFRLLTKEILKIIK
>NZ_AP019717.1|WP_002581752.1|338237_339389_+|ParM/StbA-family-protein
MKKELYIAVDPGFDTVKVIANGQFFKFPFNTEKTDEKRISNMTVADDFILYRNKDNETWRIGQYARELIFEKKDSSDIEDKMKSFYSEKRFVSDEFTIGLRTAIAMAVLRLNLYKHLKDIKIYIMVALPHSVRDNYSTQVKSILCGSHDYFVKIGKEEEEEYTFVIEEDNIFTVSQTVASILGETSDDEGNIDEDKFYYLSDGPTLVIDGGFYTIGEVAVDRGGSINEEKTFSDINHAMKNINMEIAKELENQRPDIKYYVIEYLMTKNEGKLKYLKNGKAQIIDLNVLKKEKIKEMSSRFIESLNAKYNNLLDFNYVLVTGGTGARYYEHLKEYYVGKGIVEEDRLILTNNILNGKRFDIEYAIAAGAYKGLKGKVAVLVEQ
>NZ_AP019717.1|WP_002581751.1|339392_340085_+|hypothetical-protein
MKSERIGLRFSKKDEDIISWFLMLRENKIEQSFAVKALLKAFFLQETINGGSIKIRHNVKMEPTSIAINEIDLNDDIIKMKTKGIKLASFTKDIIRLYINISDIDKAPQISELQQIHTKYKLKYLNNIVYEQSQEIKVNIESLPEFKKNIINNIKNENNMIAEESNSNDKDINSNYENLVKEKSNMDMNFQSSSKITFFDEESKNLQEVSKSEKDKKVKSKKRNPLLAQI
>NZ_AP019717.1|WP_003430862.1|340155_340665_+|helix-turn-helix-transcriptional-regulator
MNYKYMNELKKFDNIDEFEKMDFVLLSNDVISNTIDNNLQKLLFAKRITISELSRKTGVSKQVISSSIVKNTKIDLDSAIKISRVLKTPIEDIFMLKKNSWVDVYIVNGKTVYLNMKTLTMVSSEEKNMYIKTHKVKYYNPIDDCLSYKKLNENYNELFIKVGKRIEQL
>NZ_AP019717.1|WP_002581749.1|340993_342208_-|sodium/glutamate-symporter
MELNFNIYETMALVSIVLYIGKYIRNKFSILSQYCIPPSVIGGFTFALLILIFKLTNICVINLDTLLQNIFMTAFFTSIGFTASIKVLKQGGIKVITFLCLAILLVILQNIVGVTLASIFKLTPLLGLCTGSIPMIGGHGTAGSFGPILENLGITGATTVSVASATFGLIMGSIIGGLVAKALIHNYKLKTIRDEYSEKPPSEVGDYNEENHNILSFKKLTNGACLLFIAMGIGSVVSDFIQKTGLTFPSYIGAMIVAAIIRNIYDFTDKEIVEKEIETLGGLSLSFFLTMALMGLKLWQLFDLALPLMIMLFAQVILVGLFAYFITYKVMGKNYEAAVFASATCGFGMGATPNAIANMDELTNRYGFVHTPYFVVPIVGCLFIDFVNSGIITIFINFISYNIY
>NZ_AP019717.1|WP_035763991.1|343200_345111_+|threonine--tRNA-ligase
MLINIKLKDGSIKEIEDNSTVFDLAQSISRNLGKSALVGEVNGCLVDLNYKLKNNDEVNILSDDSEKAVEVIRHSSAHIMAQAVKRLYKNAKLAIGPSIANGFYYDFDIDTTIIKEDLEKIEKEMNKIVKENLKFERIDVSKEEALKIMKDNDEIYKVELINDLPEGEKISLYKQGDYIDLCRGPHIPSTKYAKAFKLISVAGAYWRGNEKNKMLQRVYGIAFSNLKELEIHLHNLEEAKKRDHRKLGKELNLFTFAEEGPGFPFFLPKGVILKNSLIDFWRKIHYEAGYVEVETPIMLNKKLWETSGHWYHYKENMYTSMIDDEEFALKPMNCPGGMIVYKSDSHSYRDFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPEQIKSEIKGVVELIDKVYSIFGFKYHVELSTRPEDSMGSDEEWQMAEDSLRGALDELNLQYVINEGDGAFYGPKIDFHLEDSIGRTWQCGTIQLDFQLPQRFELEYVGSDNEKHRPIVIHRVIFGSIERFIGILIEHFAGKFPTWLAPVQVKVLPISDKFNNYCDEVVKQFNENGIRVEIDQRNEKIGYKIREARNERVPYIVIIGEKEEEEGNVSLRSRKNGDEGSINVRDLIERINNEIKNKYI
>NZ_AP019717.1|WP_035763990.1|345230_346079_-|pentapeptide-repeat-containing-protein
MKYTIDELYSKELKCNCENCFGLCCTALFFSACDGFPQNKDAGKPCINLKQDFTCSIHNTLLKKGLKGCISYECFGAGQKIAQKTFNKISWRKDPQSASKMFDTFLIIKQIHEMLWYLVQSYTLEKNNKISSQIESLIDDTIKVSLWDVDKLLNLDLESYRDKVNVYLKATSETIRKKFKLSSSKSLSTSKKQIQGKNFLGKDLTKYNLCGADFRGALLIASNLSYSDLSGADFIGADLRDTNLSSSDLSRSIFLTQAQINSAKGDLKTKLPPMIVRPSYWI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019717_1	1.1\|331611\|51\|NZ_AP019717\|CRISPRCasFinder	331611-331661	51	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	379362-379412	0	1.0
NZ_AP019717_1	1.1\|331611\|51\|NZ_AP019717\|CRISPRCasFinder	331611-331661	51	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	493938-493988	0	1.0
NZ_AP019717_1	1.1\|331611\|51\|NZ_AP019717\|CRISPRCasFinder	331611-331661	51	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	296581-296631	0	1.0
NZ_AP019717_1	1.1\|331611\|51\|NZ_AP019717\|CRISPRCasFinder	331611-331661	51	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	882019-882069	0	1.0
NZ_AP019717_1	1.1\|331611\|51\|NZ_AP019717\|CRISPRCasFinder	331611-331661	51	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	882034-882084	0	1.0
NZ_AP019717_1	1.1\|331611\|51\|NZ_AP019717\|CRISPRCasFinder	331611-331661	51	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	331611-331661	0	1.0
NZ_AP019717_2	2.1\|331805\|31\|NZ_AP019717\|CRISPRCasFinder	331805-331835	31	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	379188-379218	0	1.0
NZ_AP019717_2	2.1\|331805\|31\|NZ_AP019717\|CRISPRCasFinder	331805-331835	31	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	296775-296805	0	1.0
NZ_AP019717_2	2.1\|331805\|31\|NZ_AP019717\|CRISPRCasFinder	331805-331835	31	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	882213-882243	0	1.0
NZ_AP019717_2	2.1\|331805\|31\|NZ_AP019717\|CRISPRCasFinder	331805-331835	31	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	882228-882258	0	1.0
NZ_AP019717_2	2.1\|331805\|31\|NZ_AP019717\|CRISPRCasFinder	331805-331835	31	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	331805-331835	0	1.0
NZ_AP019717_2	2.1\|331805\|31\|NZ_AP019717\|CRISPRCasFinder	331805-331835	31	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	493764-493794	1	0.968

1. spacer 1.1|331611|51|NZ_AP019717|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

2. spacer 1.1|331611|51|NZ_AP019717|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

3. spacer 1.1|331611|51|NZ_AP019717|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

4. spacer 1.1|331611|51|NZ_AP019717|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

5. spacer 1.1|331611|51|NZ_AP019717|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

6. spacer 1.1|331611|51|NZ_AP019717|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

7. spacer 2.1|331805|31|NZ_AP019717|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

8. spacer 2.1|331805|31|NZ_AP019717|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

9. spacer 2.1|331805|31|NZ_AP019717|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

10. spacer 2.1|331805|31|NZ_AP019717|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

11. spacer 2.1|331805|31|NZ_AP019717|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

12. spacer 2.1|331805|31|NZ_AP019717|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 1, identity: 0.968

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttcgttcacaag	Protospacer
********************* *********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP019716

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP019717

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection