CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041300	Escherichia coli O1:H42 strain CLSC36 chromosome, complete genome	5 crisprs	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	0	14	9	0
NZ_CP041299	Escherichia coli O1:H42 strain CLSC36 plasmid pCys-1, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041300_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041300_1

1180365-1181065

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

The CRISPR arrays of NZ_CP041300_1

>merge|NZ_CP041300|1|1180365-1181065|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTCAGCGGCAAAAAATACGATCTCGCCGGTGTGTGTTCCCCGCGCTAGCGGGGATAAACCGGCAAACCGGCATCAGATATAAGCTGTTCTCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGACACAATCTCAACTTGCTGAATTAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATGGCGCTGCCGATCGACAAATGGGACCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCTATCGGGTTCCCTTTTAATGTGATTCCGAATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGACGTTACGGAACGGCGCGCGAGTATAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGCCTGGGTCGACGAATTGCAAGAGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACTTGGCGACACAGACGTAACGGCGGTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTTAACTCCATTTATCAAAGCGCAATTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATAGCTGATAGCTCTCTCAATAATTAACGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGCAACATTTACCGCCGGTCAAAAACAGGACGTGTTCCCCGCGCCAGCGGGGATGAACCA

>NZ_CP041300|1|1|1180365-1181064|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCTAGCGGGGATAAACC	GGCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	TATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAGACGTTACGGAACGGCGCGCGAGTATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAACAGGCCTGGGTCGACGAATTGCAAGAGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAACTTGGCGACACAGACGTAACGGCGGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACC

>NZ_CP041300|1|1|1180365-1181065|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGACGTTACGGAACGGCGCGCGAGTATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGCCTGGGTCGACGAATTGCAAGAGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACTTGGCGACACAGACGTAACGGCGGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

>NZ_CP041300|1|1|1180365-1181065|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGACGTTACGGAACGGCGCGCGAGTATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGCCTGGGTCGACGAATTGCAAGAGGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACTTGGCGACACAGACGTAACGGCGGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041300.1\|WP_001164562.1\|1183207_1184485_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP041300.1\|WP_000210878.1\|1175105_1176743_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP041300.1\|WP_023908985.1\|1189297_1190158_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP041300.1\|WP_000036723.1\|1176829_1178128_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP041300.1\|WP_000021342.1\|1184803_1185589_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP041300.1\|WP_022646048.1\|1178187_1179060_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP041300.1\|WP_000581937.1\|1173431_1173680_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP041300.1\|WP_001130256.1\|1190304_1190880_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP041300.1\|WP_022646046.1\|1181702_1183181_-\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP041300.1\|WP_000254750.1\|1173679_1174015_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP041300.1\|WP_000147668.1\|1187134_1188544_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP041300.1\|WP_001199973.1\|1179353_1180025_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP041300.1\|WP_022646042.1\|1191147_1192419_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP041300.1\|WP_000046818.1\|1169770_1171072_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP041300.1\|WP_022646044.1\|1188521_1189301_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP041300.1\|WP_022646045.1\|1185658_1187113_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP041300.1\|WP_000109537.1\|1190896_1191157_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP041300.1\|WP_000186450.1\|1166957_1169714_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP041300.1\|WP_001071641.1\|1174086_1174878_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP041300.1\|WP_000226815.1\|1171119_1173354_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
NZ_CP041300.1\|WP_001164562.1\|1183207_1184485_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.87501e-29
NZ_CP041300.1\|WP_000210878.1\|1175105_1176743_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP041300.1\|WP_023908985.1\|1189297_1190158_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.43837e-88
NZ_CP041300.1\|WP_000036723.1\|1176829_1178128_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP041300.1\|WP_000021342.1\|1184803_1185589_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.62537e-140
NZ_CP041300.1\|WP_022646048.1\|1178187_1179060_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.57168e-95
NZ_CP041300.1\|WP_000581937.1\|1173431_1173680_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP041300.1\|WP_001130256.1\|1190304_1190880_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.33799e-87
NZ_CP041300.1\|WP_022646046.1\|1181702_1183181_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.58462e-109
NZ_CP041300.1\|WP_000254750.1\|1173679_1174015_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.22533e-74
NZ_CP041300.1\|WP_000147668.1\|1187134_1188544_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.9507e-51
NZ_CP041300.1\|WP_001199973.1\|1179353_1180025_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP041300.1\|WP_022646042.1\|1191147_1192419_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.94463e-124
NZ_CP041300.1\|WP_000046818.1\|1169770_1171072_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP041300.1\|WP_022646044.1\|1188521_1189301_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	4.70543e-60
NZ_CP041300.1\|WP_022646045.1\|1185658_1187113_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.79726e-81
NZ_CP041300.1\|WP_000109537.1\|1190896_1191157_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.07968e-40
NZ_CP041300.1\|WP_000186450.1\|1166957_1169714_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP041300.1\|WP_001071641.1\|1174086_1174878_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.52379e-160
NZ_CP041300.1\|WP_000226815.1\|1171119_1173354_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>NZ_CP041300.1|WP_001199973.1|1179353_1180025_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP041300.1|WP_022646048.1|1178187_1179060_-|YgcG-family-protein
MRYFILIFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTRKLESIFNNTQVQIAVLIIPTTKDETIEQYATRVFNNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAIIALNNQLTSQHQYSANPSESESASSSDYYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP041300.1|WP_000036723.1|1176829_1178128_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP041300.1|WP_000210878.1|1175105_1176743_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP041300.1|WP_001071641.1|1174086_1174878_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEAQQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP041300.1|WP_000254750.1|1173679_1174015_+|endoribonuclease-MazF
MVSRYVPDTGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP041300.1|WP_000581937.1|1173431_1173680_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP041300.1|WP_000226815.1|1171119_1173354_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP041300.1|WP_000046818.1|1169770_1171072_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP041300.1|WP_000186450.1|1166957_1169714_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP041300.1|WP_022646046.1|1181702_1183181_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNEDSIQSWSNA
>NZ_CP041300.1|WP_001164562.1|1183207_1184485_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>NZ_CP041300.1|WP_000021342.1|1184803_1185589_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP041300.1|WP_022646045.1|1185658_1187113_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDVEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP041300.1|WP_000147668.1|1187134_1188544_+|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYLGPHVLLGDEVAAATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQATLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP041300.1|WP_022646044.1|1188521_1189301_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEDAVLLETVADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAAIIRKTVAVELPAMQCLHLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>NZ_CP041300.1|WP_023908985.1|1189297_1190158_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTDKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSLENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVCNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEAMVTNIHADCQ
>NZ_CP041300.1|WP_001130256.1|1190304_1190880_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISHIVKKIKSAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP041300.1|WP_000109537.1|1190896_1191157_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQWLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDEKTLQQWRYPPSGFGITYRFG
>NZ_CP041300.1|WP_022646042.1|1191147_1192419_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTQALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRACYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP041300_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041300_2

1206612-1207557

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

15 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP041300_2

>merge|NZ_CP041300|2|1206612-1207557|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGCAAACGTCAGGCGGAAGTGTTCCGGTCATATAGAGTTCCCCGCGCCAGCGGGGATAAACCGGACCAGTCGGGCCAGACATCGGGGACGCAGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCGACCGCCATCGCGCATTTCGTCGAACGTCGGAGTTCCCCGCGCCAGCGGGGATAAACCGACCGGTTTTAATTGATGCCCACGCTTCGTTTAGAGTTCCCCGCGCCAGCGGGGATAAACCGAAAACACATTTTCAATAGATGGCATTCAGCTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGATTATGAGTTTGCCGGAGAATAGTTACCTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGAGGTTTTTCTGGATAAAATCCCGGGAAAGGTGGAGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAAAATAATATCCGGCAGTCTGTACGGTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCAACATTTTCCAATATCACCCAGCAATCAATTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCATGAAGACTTCGATTATTTCTTGATACCTGGAGTTCCCCGCGCCAGCGGGGATAAACCGATTTCATTAATTTTGCAGAGAAGTGTCTCGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTATAGCGCCAAAATTGACGAAAGACATGTTGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAAATTAGGCAAATGTGAACACGGCGGCCCCGAGTTCCCCGCGCCAGCGGGGATAAACCGACGACGAGACGCCCTGGTGTGCCGCGTTCGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCATAACCACCCCCATCATGAATATTTTCCGGCGAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041300|2|2|1206612-1207557|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGGTTTTAATTGATGCCCACGCTTCGTTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACACATTTTCAATAGATGGCATTCAGCTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTATGAGTTTGCCGGAGAATAGTTACCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTTTTTCTGGATAAAATCCCGGGAAAGGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGACTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041300|2|2|1206612-1207557|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGGTTTTAATTGATGCCCACGCTTCGTTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACACATTTTCAATAGATGGCATTCAGCTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTATGAGTTTGCCGGAGAATAGTTACCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTTTTTCTGGATAAAATCCCGGGAAAGGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGACTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041300|2|2|1206612-1207557|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGGTTTTAATTGATGCCCACGCTTCGTTTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACACATTTTCAATAGATGGCATTCAGCTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTATGAGTTTGCCGGAGAATAGTTACCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTTTTTCTGGATAAAATCCCGGGAAAGGTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGACTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041300.1\|WP_022646031.1\|1213952_1215002_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP041300.1\|WP_022646033.1\|1207638_1208676_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP041300.1\|WP_022646035.1\|1205302_1206220_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP041300.1\|WP_000246131.1\|1212766_1213477_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP041300.1\|WP_022646038.1\|1200936_1202445_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_CP041300.1\|WP_001246104.1\|1211919_1212243_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP041300.1\|WP_001290706.1\|1194976_1196689_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP041300.1\|WP_001173673.1\|1211264_1211870_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP041300.1\|WP_022646032.1\|1209837_1211265_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP041300.1\|WP_000281399.1\|1204687_1205287_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP041300.1\|WP_000517476.1\|1212436_1212748_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP041300.1\|WP_022646040.1\|1196762_1197497_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041300.1\|WP_022646037.1\|1202932_1204024_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP041300.1\|WP_022646036.1\|1204026_1204701_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP041300.1\|WP_022646034.1\|1206221_1206506_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP041300.1\|WP_001295182.1\|1214982_1215744_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP041300.1\|WP_001219242.1\|1213476_1213956_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP041300.1\|WP_000752798.1\|1202437_1202920_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_CP041300.1\|WP_000372392.1\|1208927_1209836_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP041300.1\|WP_063815056.1\|1197855_1200522_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
NZ_CP041300.1\|WP_022646031.1\|1213952_1215002_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP041300.1\|WP_022646033.1\|1207638_1208676_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP041300.1\|WP_022646035.1\|1205302_1206220_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.75252e-159
NZ_CP041300.1\|WP_000246131.1\|1212766_1213477_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.32778e-121
NZ_CP041300.1\|WP_022646038.1\|1200936_1202445_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_CP041300.1\|WP_001246104.1\|1211919_1212243_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP041300.1\|WP_001290706.1\|1194976_1196689_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP041300.1\|WP_001173673.1\|1211264_1211870_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP041300.1\|WP_022646032.1\|1209837_1211265_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP041300.1\|WP_000281399.1\|1204687_1205287_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.3792e-101
NZ_CP041300.1\|WP_000517476.1\|1212436_1212748_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP041300.1\|WP_022646040.1\|1196762_1197497_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.62447e-137
NZ_CP041300.1\|WP_022646037.1\|1202932_1204024_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.42279e-152
NZ_CP041300.1\|WP_022646036.1\|1204026_1204701_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.37717e-102
NZ_CP041300.1\|WP_022646034.1\|1206221_1206506_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.20986e-62
NZ_CP041300.1\|WP_001295182.1\|1214982_1215744_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP041300.1\|WP_001219242.1\|1213476_1213956_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP041300.1\|WP_000752798.1\|1202437_1202920_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.51297e-33
NZ_CP041300.1\|WP_000372392.1\|1208927_1209836_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP041300.1\|WP_063815056.1\|1197855_1200522_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0

>NZ_CP041300.1|WP_022646034.1|1206221_1206506_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSARIREMIWEQISGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>NZ_CP041300.1|WP_022646035.1|1205302_1206220_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYVLLAKQYGVKWNGRRYDPKDWEKGDTVNQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_CP041300.1|WP_000281399.1|1204687_1205287_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVITINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_CP041300.1|WP_022646036.1|1204026_1204701_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCKASDPQKALLNYEPVGGDIYSEESVTGHYLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_CP041300.1|WP_022646037.1|1202932_1204024_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKLVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_CP041300.1|WP_000752798.1|1202437_1202920_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_CP041300.1|WP_022646038.1|1200936_1202445_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGEVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVCGIDLRSTVLLNVLTIPRLQKQFPNELHTENQPTWVKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANINFSQADEVIADLRDKLHQLCEMLFNQSEAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NZ_CP041300.1|WP_063815056.1|1197855_1200522_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWEQSVVLQNAFCQNEMLSKQMVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFKEDAPSNINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPAAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEANASRLFTSSNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPEENNSAYPLINWRGVNGAQRFDLLAHSEQLPPRFSIRPEPIYLADMLPDLRMLERMIVAANAGAQVCLICNLVDVAQLCHQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEVPLASVLLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKYESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYLQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRNFSEVVDEDGVLWLEGKQNQDGWIWQGNNIVITYTRDEGMTRVIPANPK
>NZ_CP041300.1|WP_022646040.1|1196762_1197497_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWNNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041300.1|WP_001290706.1|1194976_1196689_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP041300.1|WP_022646033.1|1207638_1208676_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRSKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIILPLVKKLAKAS
>NZ_CP041300.1|WP_000372392.1|1208927_1209836_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP041300.1|WP_022646032.1|1209837_1211265_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLILIDRLSNVTVGAGMVHEPVSQATAAPSQFSVFELELNALVRRHFPHWGARDLLGDK
>NZ_CP041300.1|WP_001173673.1|1211264_1211870_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP041300.1|WP_001246104.1|1211919_1212243_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP041300.1|WP_000517476.1|1212436_1212748_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP041300.1|WP_000246131.1|1212766_1213477_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP041300.1|WP_001219242.1|1213476_1213956_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP041300.1|WP_022646031.1|1213952_1215002_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHSREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP041300.1|WP_001295182.1|1214982_1215744_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP041300_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041300_3

2407556-2407679

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041300_3

>merge|NZ_CP041300|3|2407556-2407679|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP041300|3|3|2407556-2407679|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041300.1\|WP_000007283.1\|2418145_2418727_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP041300.1\|WP_000102278.1\|2416575_2416665_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP041300.1\|WP_001070227.1\|2399642_2400269_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP041300.1\|WP_001174939.1\|2409290_2410664_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP041300.1\|WP_022645747.1\|2403106_2403775_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP041300.1\|WP_000269493.1\|2414322_2415255_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP041300.1\|WP_000534266.1\|2407993_2409250_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP041300.1\|WP_001182363.1\|2412998_2414210_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP041300.1\|WP_000528342.1\|2398977_2399187_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP041300.1\|WP_000190982.1\|2415251_2416277_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP041300.1\|WP_084818569.1\|2405384_2406989_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP041300.1\|WP_000701040.1\|2416830_2418000_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP041300.1\|WP_000493947.1\|2410878_2411520_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP041300.1\|WP_063814958.1\|2400289_2402392_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP041300.1\|WP_000098896.1\|2411559_2412708_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP041300.1\|WP_001295403.1\|2397008_2398421_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP041300.1\|WP_000212678.1\|2407114_2407420_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP041300.1\|WP_022645748.1\|2402404_2403043_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP041300.1\|WP_000587589.1\|2404560_2405373_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP041300.1\|WP_022645746.1\|2403771_2404557_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968

Protein	Function_ID	Function_description	E-value
NZ_CP041300.1\|WP_000007283.1\|2418145_2418727_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP041300.1\|WP_001070227.1\|2399642_2400269_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	5.22783e-140
NZ_CP041300.1\|WP_001174939.1\|2409290_2410664_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP041300.1\|WP_022645747.1\|2403106_2403775_+\|4Fe-4S-binding-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.88774e-75
NZ_CP041300.1\|WP_000269493.1\|2414322_2415255_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP041300.1\|WP_000534266.1\|2407993_2409250_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP041300.1\|WP_001182363.1\|2412998_2414210_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP041300.1\|WP_000528342.1\|2398977_2399187_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP041300.1\|WP_000190982.1\|2415251_2416277_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP041300.1\|WP_084818569.1\|2405384_2406989_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP041300.1\|WP_000701040.1\|2416830_2418000_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP041300.1\|WP_000493947.1\|2410878_2411520_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP041300.1\|WP_063814958.1\|2400289_2402392_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP041300.1\|WP_000098896.1\|2411559_2412708_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP041300.1\|WP_001295403.1\|2397008_2398421_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP041300.1\|WP_000212678.1\|2407114_2407420_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NZ_CP041300.1\|WP_022645748.1\|2402404_2403043_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.21415e-120
NZ_CP041300.1\|WP_000587589.1\|2404560_2405373_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	6.83407e-174
NZ_CP041300.1\|WP_022645746.1\|2403771_2404557_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.24741e-162

>NZ_CP041300.1|WP_000212678.1|2407114_2407420_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP041300.1|WP_084818569.1|2405384_2406989_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMIATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHTVTDQALNAEIQKGEYGLLDRVFRLIVEEITFADPGWSQRIALESLNVDSFAQAWFAERKQRAPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARKRLSFD
>NZ_CP041300.1|WP_000587589.1|2404560_2405373_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATHPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP041300.1|WP_022645746.1|2403771_2404557_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQNQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYLGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP041300.1|WP_022645747.1|2403106_2403775_+|4Fe-4S-binding-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRLGQHLIKKENV
>NZ_CP041300.1|WP_022645748.1|2402404_2403043_+|YdhW-family-putative-oxidoreductase-system-protein
MNHKDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP041300.1|WP_063814958.1|2400289_2402392_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP041300.1|WP_001070227.1|2399642_2400269_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP041300.1|WP_000528342.1|2398977_2399187_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP041300.1|WP_001295403.1|2397008_2398421_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP041300.1|WP_000534266.1|2407993_2409250_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP041300.1|WP_001174939.1|2409290_2410664_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP041300.1|WP_000493947.1|2410878_2411520_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP041300.1|WP_000098896.1|2411559_2412708_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP041300.1|WP_001182363.1|2412998_2414210_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP041300.1|WP_000269493.1|2414322_2415255_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP041300.1|WP_000190982.1|2415251_2416277_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP041300.1|WP_000102278.1|2416575_2416665_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP041300.1|WP_000701040.1|2416830_2418000_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP041300.1|WP_000007283.1|2418145_2418727_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP041300_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041300_4

3136937-3137028

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041300_4

>merge|NZ_CP041300|4|3136937-3137028|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP041300|4|4|3136937-3137028|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041300.1\|WP_022645494.1\|3138333_3139575_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP041300.1\|WP_022645489.1\|3147868_3148897_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP041300.1\|WP_063814913.1\|3134979_3135474_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP041300.1\|WP_022645493.1\|3139867_3141124_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP041300.1\|WP_022645492.1\|3141383_3142304_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP041300.1\|WP_022645495.1\|3137451_3138048_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP041300.1\|WP_022645496.1\|3135494_3136823_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP041300.1\|WP_001571241.1\|3126451_3130414_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP041300.1\|WP_001400192.1\|3133568_3134369_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP041300.1\|WP_022645499.1\|3133174_3133561_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP041300.1\|WP_022645498.1\|3134378_3134969_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP041300.1\|WP_024175781.1\|3132470_3133163_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP041300.1\|WP_000024560.1\|3142303_3142609_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP041300.1\|WP_022645500.1\|3131379_3132471_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP041300.1\|WP_001230246.1\|3145901_3147074_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP041300.1\|WP_001120125.1\|3147203_3147896_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP041300.1\|WP_001143120.1\|3138068_3138296_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP041300.1\|WP_000979516.1\|3126187_3126397_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041300.1\|WP_001571240.1\|3130453_3131092_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP041300.1\|WP_022645491.1\|3142760_3143360_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326

Protein	Function_ID	Function_description	E-value
NZ_CP041300.1\|WP_022645489.1\|3147868_3148897_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.65698e-176
NZ_CP041300.1\|WP_063814913.1\|3134979_3135474_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	4.66246e-105
NZ_CP041300.1\|WP_022645493.1\|3139867_3141124_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP041300.1\|WP_022645492.1\|3141383_3142304_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP041300.1\|WP_022645495.1\|3137451_3138048_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	3.61568e-133
NZ_CP041300.1\|WP_022645496.1\|3135494_3136823_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP041300.1\|WP_001571241.1\|3126451_3130414_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP041300.1\|WP_001400192.1\|3133568_3134369_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	4.94241e-139
NZ_CP041300.1\|WP_022645499.1\|3133174_3133561_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	2.63122e-84
NZ_CP041300.1\|WP_022645498.1\|3134378_3134969_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	4.73341e-131
NZ_CP041300.1\|WP_001143120.1\|3138068_3138296_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP041300.1\|WP_000024560.1\|3142303_3142609_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP041300.1\|WP_022645500.1\|3131379_3132471_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP041300.1\|WP_001230246.1\|3145901_3147074_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP041300.1\|WP_001120125.1\|3147203_3147896_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	1.16516e-137
NZ_CP041300.1\|WP_024175781.1\|3132470_3133163_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.05349e-168
NZ_CP041300.1\|WP_022645494.1\|3138333_3139575_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP041300.1\|WP_001571240.1\|3130453_3131092_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.03073e-152
NZ_CP041300.1\|WP_022645491.1\|3142760_3143360_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.07144e-83

>NZ_CP041300.1|WP_022645496.1|3135494_3136823_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVIHQEP
>NZ_CP041300.1|WP_063814913.1|3134979_3135474_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWSVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP041300.1|WP_022645498.1|3134378_3134969_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTPEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP041300.1|WP_001400192.1|3133568_3134369_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVREQLLHSGGAQAWVAAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP041300.1|WP_022645499.1|3133174_3133561_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLENIRKVIETAGGSMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP041300.1|WP_024175781.1|3132470_3133163_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDAQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP041300.1|WP_022645500.1|3131379_3132471_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPSDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVATVPGAEGVLLTFDDFLSGIENFGERIQPLMQCRAHLPALTQEVA
>NZ_CP041300.1|WP_001571240.1|3130453_3131092_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKITGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP041300.1|WP_001571241.1|3126451_3130414_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDTREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPALIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDTLHHQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP041300.1|WP_000979516.1|3126187_3126397_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP041300.1|WP_022645495.1|3137451_3138048_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGANKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP041300.1|WP_001143120.1|3138068_3138296_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP041300.1|WP_022645494.1|3138333_3139575_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKTNRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDTNGFCPMDKFDSVLNEAVK
>NZ_CP041300.1|WP_022645493.1|3139867_3141124_-|YccE-family-protein
MGSNIHGISCTANNYLKQAWHNIKKEHEKNQTYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECESLEKEFEEMQNDNDLSLFMRTLRTNGTEIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYGFMEYIENINACDDVFSECCLEDENISVQPKQIHTPGISNLDAGINLSGISFIQSEINKTYELKYAPVDGDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKPTIEALVDAAFCDLREDVKTLFGVDLQSDNKIQGVGSHMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFKDNKKLLALDTDASDRIKAVKNFLAVLSDSICSSFIVTSNVASISLGNESFSTDEDLECGYLMNTGNHYDVYLPPELFAQAYKLNNKERNAQLDYLNRYVI
>NZ_CP041300.1|WP_022645492.1|3141383_3142304_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDSQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP041300.1|WP_000024560.1|3142303_3142609_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP041300.1|WP_022645491.1|3142760_3143360_-|molecular-chaperone-TorD
MTTLTAPQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGSVPARRIDSLRQKTLTALWEWLPEFAARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP041300.1|WP_001230246.1|3145901_3147074_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASAVKVIKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP041300.1|WP_001120125.1|3147203_3147896_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP041300.1|WP_022645489.1|3147868_3148897_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLLLLLSLFMLSAFSADNLLRWHDAQHFSVQPSTPLKTKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYYYQHTSAAKK

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Crispr_ID: NZ_CP041300_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041300_5

3270014-3270161

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041300_5

>merge|NZ_CP041300|5|3270014-3270161|CRISPRCasFinder,PILER-CR
CATTTTATCTGCCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCCAACTTTCACAGCCTTTGCAAGATTGTTCCTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP041300|5|5|3270014-3270161|CRISPRCasFinder
CATTTTATCTGCCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCAGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP041300|5|3|3270022-3270161|PILER-CR
CTGCCTGTACGGCAGTGAACATGGTGGG	CGGGTGGAGTATGTTACCAGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGCCAACTT	TCACAGCCTTTGCAAGATTGTTCCTTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041300.1\|WP_063814902.1\|3282063_3283716_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP041300.1\|WP_001202192.1\|3266657_3268379_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP041300.1\|WP_001043590.1\|3264890_3266657_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP041300.1\|WP_022645453.1\|3268420_3269125_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP041300.1\|WP_000934041.1\|3270375_3272652_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP041300.1\|WP_022645444.1\|3273622_3275569_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP041300.1\|WP_000488716.1\|3279868_3280564_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP041300.1\|WP_000520781.1\|3272682_3273003_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP041300.1\|WP_001295343.1\|3257789_3258401_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP041300.1\|WP_000228473.1\|3262764_3263259_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP041300.1\|WP_000410785.1\|3273325_3273550_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP041300.1\|WP_022645441.1\|3281021_3281921_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP041300.1\|WP_000067771.1\|3256435_3257779_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP041300.1\|WP_001400542.1\|3276831_3277788_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP041300.1\|WP_000537432.1\|3263802_3264768_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP041300.1\|WP_001040187.1\|3269409_3269628_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP041300.1\|WP_022645455.1\|3258559_3262630_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP041300.1\|WP_000886683.1\|3255052_3256345_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP041300.1\|WP_000599806.1\|3277784_3279443_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP041300.1\|WP_000746460.1\|3275565_3276681_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
NZ_CP041300.1\|WP_063814902.1\|3282063_3283716_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP041300.1\|WP_001202192.1\|3266657_3268379_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041300.1\|WP_001043590.1\|3264890_3266657_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041300.1\|WP_022645453.1\|3268420_3269125_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.78168e-138
NZ_CP041300.1\|WP_000934041.1\|3270375_3272652_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP041300.1\|WP_022645444.1\|3273622_3275569_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP041300.1\|WP_000488716.1\|3279868_3280564_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP041300.1\|WP_000520781.1\|3272682_3273003_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP041300.1\|WP_001295343.1\|3257789_3258401_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP041300.1\|WP_000228473.1\|3262764_3263259_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP041300.1\|WP_000410785.1\|3273325_3273550_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP041300.1\|WP_022645441.1\|3281021_3281921_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.06035e-116
NZ_CP041300.1\|WP_000067771.1\|3256435_3257779_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP041300.1\|WP_001400542.1\|3276831_3277788_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.4029e-131
NZ_CP041300.1\|WP_000537432.1\|3263802_3264768_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP041300.1\|WP_001040187.1\|3269409_3269628_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP041300.1\|WP_022645455.1\|3258559_3262630_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP041300.1\|WP_000886683.1\|3255052_3256345_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP041300.1\|WP_000599806.1\|3277784_3279443_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP041300.1\|WP_000746460.1\|3275565_3276681_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>NZ_CP041300.1|WP_001040187.1|3269409_3269628_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP041300.1|WP_022645453.1|3268420_3269125_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWCEDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNKFWVPRCLFSPQE
>NZ_CP041300.1|WP_001202192.1|3266657_3268379_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP041300.1|WP_001043590.1|3264890_3266657_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGIDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP041300.1|WP_000537432.1|3263802_3264768_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP041300.1|WP_000228473.1|3262764_3263259_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP041300.1|WP_022645455.1|3258559_3262630_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEEDESHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAPEQSAQQPYYAPAPEQSVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSAGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFTLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPIAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP041300.1|WP_001295343.1|3257789_3258401_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP041300.1|WP_000067771.1|3256435_3257779_-|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP041300.1|WP_000886683.1|3255052_3256345_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP041300.1|WP_000934041.1|3270375_3272652_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP041300.1|WP_000520781.1|3272682_3273003_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP041300.1|WP_000410785.1|3273325_3273550_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP041300.1|WP_022645444.1|3273622_3275569_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVSNPPAIEKVNVAGGTEPVVNTASGWRQFASGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP041300.1|WP_000746460.1|3275565_3276681_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP041300.1|WP_001400542.1|3276831_3277788_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP041300.1|WP_000599806.1|3277784_3279443_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP041300.1|WP_000488716.1|3279868_3280564_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP041300.1|WP_022645441.1|3281021_3281921_+|L-lysine-exporter-LysO
MFSGLLIILVPLILGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNYHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP041300.1|WP_063814902.1|3282063_3283716_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIVLREALKAQCLAVDANAHVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETRKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041300_4	4.1\|3136963\|40\|NZ_CP041300\|CRISPRCasFinder	3136963-3137002	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP041300_2	2.14\|1207435\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207435-1207466	32	KT898133	Aeromonas phage phiARM81ld, complete genome	45656-45687	1	0.969
NZ_CP041300_3	3.1\|2407599\|38\|NZ_CP041300\|CRISPRCasFinder	2407599-2407636	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP041300_2	2.2\|1206702\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206702-1206733	32	MK972713	Salmonella phage SW5, complete genome	27687-27718	5	0.844
NZ_CP041300_2	2.2\|1206702\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206702-1206733	32	MK972714	Salmonella phage SW3, complete genome	27909-27940	5	0.844
NZ_CP041300_2	2.2\|1206702\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206702-1206733	32	NC_049460	Salmonella phage SI7, complete genome	18129-18160	5	0.844
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1203814-1203845	6	0.812
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1167510-1167541	6	0.812
NZ_CP041300_1	1.15\|1180577\|32\|NZ_CP041300\|CRISPRCasFinder,CRT	1180577-1180608	32	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	373536-373567	7	0.781
NZ_CP041300_2	2.1\|1206641\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206641-1206672	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	17850-17881	7	0.781
NZ_CP041300_2	2.1\|1206641\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206641-1206672	32	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	17628-17659	7	0.781
NZ_CP041300_2	2.1\|1206641\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206641-1206672	32	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	17890-17921	7	0.781
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1175642-1175673	7	0.781
NZ_CP041300_2	2.14\|1207435\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207435-1207466	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	16523-16554	7	0.781
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NC_031109	Gordonia phage Jumbo, complete genome	25391-25422	8	0.75
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	398774-398805	8	0.75
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	565533-565564	8	0.75
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	63515-63546	8	0.75
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	350647-350678	8	0.75
NZ_CP041300_2	2.7\|1207008\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207008-1207039	32	NZ_CP046725	Pantoea agglomerans strain ASB05 plasmid pASB05p3, complete sequence	31336-31367	8	0.75
NZ_CP041300_2	2.8\|1207069\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207069-1207100	32	CP022610	Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence	10541-10572	8	0.75
NZ_CP041300_2	2.9\|1207130\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207130-1207161	32	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	57083-57114	8	0.75
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	555186-555217	9	0.719
NZ_CP041300_2	2.3\|1206763\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206763-1206794	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	471692-471723	9	0.719
NZ_CP041300_2	2.9\|1207130\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207130-1207161	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	137043-137074	9	0.719
NZ_CP041300_2	2.11\|1207252\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207252-1207283	32	MT446414	UNVERIFIED: Escherichia virus TH43, complete genome	38100-38131	9	0.719
NZ_CP041300_5	5.1\|3270042\|32\|NZ_CP041300\|CRISPRCasFinder	3270042-3270073	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP041300_5	5.1\|3270042\|32\|NZ_CP041300\|CRISPRCasFinder	3270042-3270073	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP041300_5	5.1\|3270042\|32\|NZ_CP041300\|CRISPRCasFinder	3270042-3270073	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP041300_5	5.3\|3270050\|32\|NZ_CP041300\|PILER-CR	3270050-3270081	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP041300_5	5.3\|3270050\|32\|NZ_CP041300\|PILER-CR	3270050-3270081	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP041300_5	5.3\|3270050\|32\|NZ_CP041300\|PILER-CR	3270050-3270081	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP041300_2	2.7\|1207008\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207008-1207039	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	395752-395783	10	0.688
NZ_CP041300_2	2.7\|1207008\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207008-1207039	32	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	333637-333668	10	0.688
NZ_CP041300_2	2.7\|1207008\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207008-1207039	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	574155-574186	10	0.688
NZ_CP041300_2	2.7\|1207008\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207008-1207039	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	372821-372852	10	0.688
NZ_CP041300_2	2.7\|1207008\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207008-1207039	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	232591-232622	10	0.688
NZ_CP041300_2	2.7\|1207008\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1207008-1207039	32	NZ_CP031650	Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence	126966-126997	10	0.688
NZ_CP041300_2	2.5\|1206885\|32\|NZ_CP041300\|PILER-CR,CRISPRCasFinder,CRT	1206885-1206916	32	NZ_LR134428	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19	36361-36392	11	0.656

1. spacer 4.1|3136963|40|NZ_CP041300|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 2.14|1207435|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 1, identity: 0.969

acgacgagacgccctggtgtgccgcgttcgtc	CRISPR spacer
acgacgagacgccctggtgcgccgcgttcgtc	Protospacer
*******************.************

3. spacer 3.1|2407599|38|NZ_CP041300|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 2.2|1206702|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

5. spacer 2.2|1206702|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

6. spacer 2.2|1206702|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

7. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 6, identity: 0.812

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgcggccatcgcgcagttcgtcgaacgccg	Protospacer
*  .* *********** ***********.**

8. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.812

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgttg	Protospacer
 ** .******************* * ***.*

9. spacer 1.15|1180577|32|NZ_CP041300|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 7, identity: 0.781

aatggcgctgccgatcgacaaatgggacctgg-	CRISPR spacer
gatggcgatgccgatggacaaat-gcacatgct	Protospacer
.****** ******* ******* * ** **

10. spacer 2.1|1206641|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

11. spacer 2.1|1206641|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

12. spacer 2.1|1206641|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

13. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgctg	Protospacer
 ** .******************* * **..*

14. spacer 2.14|1207435|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 7, identity: 0.781

acgacg-agacgccctggtgtgccgcgttcgtc	CRISPR spacer
-cgccgccgacgctcgggtgtgccgcgttcgga	Protospacer
 ** **  *****.* ***************

15. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gacaataccatcgcggattttgtcgaacgtcg	Protospacer
   * ..******** ****.***********

16. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

17. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

18. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgacgccgtcgcgcatttcgtcgaccgcct	Protospacer
*  . ****.**************** **.*

19. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gccgccgccatcgcgcaattcggcgaatatgg	Protospacer
 * .************* **** ****..* *

20. spacer 2.7|1207008|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046725 (Pantoea agglomerans strain ASB05 plasmid pASB05p3, complete sequence) position: , mismatch: 8, identity: 0.75

aggtttttctggataaaatcccgggaaaggtg	CRISPR spacer
tggtttttacggataaaatcccgggacttcag	Protospacer
 ******* .****************     *

21. spacer 2.8|1207069|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

caaaaaaataatatccggcagtctgtacggta	CRISPR spacer
aagaaaaatcatatccggcagtctttagcgag	Protospacer
 *.****** ************** **  * .

22. spacer 2.9|1207130|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

-caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gtaac-ttttctaatatcacccagcactccggg	Protospacer
 .*** *****.************** ** .

23. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tcgaccggcatcgcgcagttcgtcgctgagag	Protospacer
.****** ********* *******   .  *

24. spacer 2.3|1206763|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gagaccggcatcgcgcatttcctcgagcacat	Protospacer
  ***** ************* ****.*..

25. spacer 2.9|1207130|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gattgccttccaatatcagccagctatcaaat	Protospacer
 * ....*********** ***** ***** *

26. spacer 2.11|1207252|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to MT446414 (UNVERIFIED: Escherichia virus TH43, complete genome) position: , mismatch: 9, identity: 0.719

atttcattaattttgcagagaagtgtctcgaa	CRISPR spacer
atttcatcaactttgcagagaaggaaatttat	Protospacer
*******.**.************ .  *. *

27. spacer 5.1|3270042|32|NZ_CP041300|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

28. spacer 5.1|3270042|32|NZ_CP041300|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

29. spacer 5.1|3270042|32|NZ_CP041300|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

30. spacer 5.3|3270050|32|NZ_CP041300|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

31. spacer 5.3|3270050|32|NZ_CP041300|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

32. spacer 5.3|3270050|32|NZ_CP041300|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

33. spacer 2.7|1207008|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 10, identity: 0.688

aggtttttctggataaaatcccgggaaaggtg	CRISPR spacer
aggtctttctggatataatcccgatcttcggc	Protospacer
****.********** *******.     *

34. spacer 2.7|1207008|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aggtttttctggataaaatcccgggaaaggtg	CRISPR spacer
aggtctttctggatataatcccgatcttcggc	Protospacer
****.********** *******.     *

35. spacer 2.7|1207008|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 10, identity: 0.688

aggtttttctggataaaatcccgggaaaggtg	CRISPR spacer
aggtctttctggatataatcccgatcttcggc	Protospacer
****.********** *******.     *

36. spacer 2.7|1207008|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 10, identity: 0.688

aggtttttctggataaaatcccgggaaaggtg	CRISPR spacer
aggtctttctggatataatcccgatcttcggc	Protospacer
****.********** *******.     *

37. spacer 2.7|1207008|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 10, identity: 0.688

aggtttttctggataaaatcccgggaaaggtg	CRISPR spacer
aggtctttctggatataatcccgatcttcggc	Protospacer
****.********** *******.     *

38. spacer 2.7|1207008|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031650 (Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aggtttttctggataaaatcccgggaaaggtg	CRISPR spacer
aggtctttctggatataatcccgatcttcggc	Protospacer
****.********** *******.     *

39. spacer 2.5|1206885|32|NZ_CP041300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134428 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19) position: , mismatch: 11, identity: 0.656

aaaacacattttcaatagatggcattcagcta	CRISPR spacer
gtttgggtttttcaatagatgaaattcagctt	Protospacer
.    .  *************. ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

116567 : 125493

Stx2-converting_phage(66.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001171523.1\|116567_116948_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612556.1\|116944_117292_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
WP_001593684.1\|117387_118980_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-181	63.4
WP_000624717.1\|119010_119361_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.2e-40	66.4
WP_000422741.1\|119357_119783_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_001360336.1\|121995_125493_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	2.7e-98	34.8

DBSCAN-SWA_2

718077 : 784906

Shigella_phage(21.43%)

tRNA,transposase,holin,integrase

attL 744993:745008|attR 777191:777206

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000785722.1\|718077_718482_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_000031415.1\|718484_718790_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_001295543.1\|718827_719196_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_001166764.1\|719342_719726_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_000422149.1\|719729_720392_-	DedA family protein	NA	NA	NA	NA
WP_000406495.1\|720736_721513_-	transcriptional regulator ExuR	NA	NA	NA	NA
WP_001361213.1\|721804_722521_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_022646151.1\|722550_723051_+	fimbrial protein	NA	NA	NA	NA
WP_000358691.1\|723141_725826_+	TcfC E-set like domain-containing protein	NA	NA	NA	NA
WP_001298326.1\|726991_728290_-	hexuronate transporter ExuT	NA	NA	NA	NA
WP_000187442.1\|728772_730185_+	glucuronate isomerase	NA	NA	NA	NA
WP_001199369.1\|730199_731687_+	altronate dehydratase	NA	NA	NA	NA
WP_000128138.1\|731769_732321_+	YgjV family protein	NA	NA	NA	NA
WP_000211642.1\|732324_733569_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_001098826.1\|733892_734858_-	TerC family membrane protein Alx	A0A291LBC5	Escherichia_phage	5.2e-36	33.8
WP_001385498.1\|735140_736127_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000942551.1\|736205_736898_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA
WP_001295542.1\|736974_737478_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_000018659.1\|737562_738699_+	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_000560269.1\|739293_739710_+	type II toxin-antitoxin system antitoxin HigA	NA	NA	NA	NA
WP_022646149.1\|739754_741773_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_022646148.1\|741998_744350_-	alpha-glucosidase	NA	NA	NA	NA
WP_022646147.1\|744366_745437_-	protein YgjJ	NA	NA	NA	NA
744993:745008	attL	NA	NA	NA	NA
WP_001285446.1\|745570_747004_-	amino acid permease	NA	NA	NA	NA
WP_001357699.1\|747066_747516_-	beta-galactosidase subunit beta	NA	NA	NA	NA
WP_022646146.1\|747512_750605_-	beta-galactosidase subunit alpha	L0N6M2	Herpes_simplex_virus	3.4e-158	34.2
WP_000212433.1\|750788_751772_-	transcriptional regulator EbgR	NA	NA	NA	NA
WP_000450588.1\|751990_752323_+\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_032140334.1\|752364_753744_-	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	1.0e-32	28.2
WP_000094726.1\|754161_755682_+	aerotaxis sensor receptor Aer	A0A1B0V854	Salmonella_phage	3.1e-35	51.5
WP_021581059.1\|755778_756402_-	DNA-binding transcriptional regulator NfeR	NA	NA	NA	NA
WP_022646145.1\|756689_757454_+	NADPH-dependent ferric chelate reductase	NA	NA	NA	NA
WP_000290293.1\|757750_759067_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	5.0e-34	28.4
WP_000268404.1\|759196_759793_+	hypothetical protein	A0A1B0VBK8	Salmonella_phage	9.4e-97	87.4
WP_032333863.1\|759875_761480_-	hypothetical protein	NA	NA	NA	NA
WP_000265817.1\|762259_762487_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001313175.1\|762549_763296_+	hypothetical protein	NA	NA	NA	NA
WP_001300090.1\|763577_764078_+	hypothetical protein	NA	NA	NA	NA
WP_000628304.1\|764466_765081_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_024176343.1\|765108_765675_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_167588549.1\|765974_767209_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-170	95.7
WP_000233940.1\|767366_768041_+	hypothetical protein	NA	NA	NA	NA
WP_077631677.1\|768140_768359_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_023149493.1\|768309_768456_-	hypothetical protein	NA	NA	NA	NA
WP_050583671.1\|768962_769298_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	8.9e-36	73.3
WP_023149491.1\|769317_770850_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.9e-159	56.2
WP_001313190.1\|771370_771886_-	HNH endonuclease	NA	NA	NA	NA
WP_001564126.1\|772305_773082_+	hypothetical protein	NA	NA	NA	NA
WP_000134227.1\|773737_775345_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.7e-100	40.5
WP_000836927.1\|775341_776502_-	AAA family ATPase	NA	NA	NA	NA
WP_001564125.1\|776498_777770_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	6.2e-13	24.6
777191:777206	attR	NA	NA	NA	NA
WP_138031502.1\|777951_780924_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.0e-17	22.3
WP_085947924.1\|781989_783197_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.6e-95	61.2
WP_000283011.1\|783389_783572_-	hypothetical protein	NA	NA	NA	NA
WP_174234662.1\|783677_784906_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.2e-176	98.3

DBSCAN-SWA_3

1839201 : 1848643

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022645872.1\|1839201_1840128_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.2e-23	30.8
WP_022645871.1\|1840132_1840864_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1840844_1840952_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|1841011_1841743_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001334139.1\|1841964_1843650_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
WP_012311742.1\|1843646_1844366_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1844412_1844883_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|1844923_1845385_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_084818592.1\|1845509_1847510_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001329822.1\|1847506_1848643_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4

DBSCAN-SWA_4

1939215 : 1945524

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116131.1\|1939215_1940610_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.8e-19	31.9
WP_000183060.1\|1940784_1941678_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_000699418.1\|1942050_1943136_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-101	54.2
WP_001023627.1\|1943135_1944035_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-29	35.6
WP_000857549.1\|1944092_1944971_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.5e-106	64.1
WP_001100791.1\|1944975_1945524_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.2e-51	56.1

DBSCAN-SWA_5

2495877 : 2545998

Enterobacteria_phage(46.81%)

portal,terminase,protease,tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000836037.1\|2495877_2496897_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001389342.1\|2496954_2497083_+	hypothetical protein	NA	NA	NA	NA
WP_000876976.1\|2497084_2498365_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	1.0e-156	62.6
WP_000005552.1\|2498399_2498651_-	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_024946566.1\|2498723_2501195_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	57.5
WP_001090200.1\|2501287_2501479_-	DUF1482 family protein	NA	NA	NA	NA
WP_001317853.1\|2501475_2501664_-	hypothetical protein	NA	NA	NA	NA
WP_000159335.1\|2502166_2502367_+	hypothetical protein	NA	NA	NA	NA
WP_001241299.1\|2502335_2502713_-	hypothetical protein	NA	NA	NA	NA
WP_000379591.1\|2502712_2502865_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_001003381.1\|2503057_2503465_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000476993.1\|2503542_2503770_+	transcriptional regulator	NA	NA	NA	NA
WP_000705349.1\|2503753_2504275_+	hypothetical protein	NA	NA	NA	NA
WP_000054505.1\|2504255_2505221_+	hypothetical protein	U5P0A0	Shigella_phage	2.9e-55	61.2
WP_001151189.1\|2505261_2505663_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.4e-64	95.5
WP_022645725.1\|2505862_2506885_+	hypothetical protein	Q858S2	Enterobacteria_phage	2.5e-105	62.4
WP_001546200.1\|2507747_2507855_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.5e-08	96.6
WP_000887491.1\|2507899_2508112_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_000980999.1\|2508328_2508580_+	hypothetical protein	NA	NA	NA	NA
WP_032140164.1\|2508646_2508925_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_001376415.1\|2508926_2509976_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	6.5e-109	54.6
WP_000904111.1\|2509988_2510345_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_000762886.1\|2510359_2511181_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.1e-78	59.0
WP_000562553.1\|2512076_2512208_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_000506936.1\|2512574_2513003_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_001348108.1\|2513174_2513549_+	hypothetical protein	NA	NA	NA	NA
WP_000839562.1\|2513800_2514016_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_000196128.1\|2514020_2514332_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.5e-24	62.6
WP_001092966.1\|2514328_2514862_+	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	93.2
WP_001071776.1\|2514858_2515356_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_000066495.1\|2515719_2515932_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071526745.1\|2515942_2516131_+	cold-shock protein	NA	NA	NA	NA
WP_001443523.1\|2516278_2516434_+	hypothetical protein	NA	NA	NA	NA
WP_001019207.1\|2516606_2516780_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000548593.1\|2517075_2517282_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_022645722.1\|2517834_2518329_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	3.8e-83	99.4
WP_000934102.1\|2518328_2520431_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.6
WP_001072975.1\|2520427_2520640_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000985958.1\|2520639_2522148_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	6.6e-288	99.4
WP_001136588.1\|2522092_2524120_+\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.7
WP_001097050.1\|2524205_2524529_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_022645721.1\|2524521_2524797_+	phage protein	K7PH43	Enterobacteria_phage	3.8e-45	98.9
WP_000677120.1\|2524808_2525399_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
WP_001079410.1\|2525395_2525797_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
WP_022645720.1\|2525807_2526551_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.3e-131	98.4
WP_001370402.1\|2526611_2526998_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.9e-62	96.1
WP_063815218.1\|2527006_2527324_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	4.4e-53	100.0
WP_022645718.1\|2527307_2530373_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.2
WP_000447253.1\|2530372_2530702_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152382.1\|2530711_2531410_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.3e-134	99.6
WP_024946565.1\|2531415_2532159_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.4
WP_023277304.1\|2532056_2532704_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.7e-110	94.9
WP_022645716.1\|2532764_2536244_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_001228249.1\|2536311_2536911_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.5e-102	92.0
WP_001546831.1\|2536975_2539348_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M0V5	Enterobacteria_phage	4.1e-103	47.5
WP_001546830.1\|2539344_2539623_+	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.8e-24	54.3
WP_001546829.1\|2539633_2540674_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.5e-155	80.5
WP_001546828.1\|2540716_2541010_+	hypothetical protein	NA	NA	NA	NA
WP_000086527.1\|2541237_2541828_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|2542144_2542378_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|2542446_2542560_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000347484.1\|2543164_2544448_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527788.1\|2544537_2545998_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	6.6e-43	30.1

DBSCAN-SWA_6

2715385 : 2767855

Escherichia_phage(47.92%)

terminase,tRNA,lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077250922.1\|2715385_2717734_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M0V5	Enterobacteria_phage	9.5e-92	45.4
WP_024173375.1\|2717798_2718398_-	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	3.8e-106	95.5
WP_050496112.1\|2722004_2722607_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	3.4e-86	83.7
WP_021520058.1\|2722543_2723287_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.0e-145	95.5
WP_001578255.1\|2723292_2723991_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.9e-128	94.4
WP_000024051.1\|2723990_2724329_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_012565075.1\|2728027_2728387_-	hypothetical protein	NA	NA	NA	NA
WP_000094292.1\|2728537_2729500_-	hypothetical protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
WP_000144678.1\|2729526_2729919_-	hypothetical protein	NA	NA	NA	NA
WP_063814927.1\|2729915_2730296_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.5e-18	44.4
WP_000524260.1\|2730296_2730680_-	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_096855981.1\|2730666_2731074_-	protein singed	NA	NA	NA	NA
WP_000908084.1\|2731077_2731254_-	hypothetical protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
WP_000918487.1\|2731296_2732436_-	hypothetical protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
WP_063814926.1\|2732534_2733299_-	hypothetical protein	G8C7P6	Escherichia_phage	2.6e-83	63.8
WP_001351715.1\|2733403_2734516_-	hypothetical protein	I6PD76	Cronobacter_phage	4.2e-114	54.5
WP_000763704.1\|2734499_2735906_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.0e-186	69.0
WP_063814925.1\|2735908_2737210_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	4.7e-149	59.6
WP_000089447.1\|2737190_2738285_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	5.9e-113	80.5
WP_000613571.1\|2738288_2738540_-	hypothetical protein	NA	NA	NA	NA
WP_001204037.1\|2738475_2739408_-	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.4e-83	54.9
WP_001291094.1\|2739400_2740192_-	ParB N-terminal domain-containing protein	R4TG31	Halovirus	2.8e-48	40.2
WP_001097895.1\|2740329_2741787_-	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_001228688.1\|2741983_2742169_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	3.6e-15	96.5
WP_000992105.1\|2742385_2742919_-	lysozyme	K7PLY1	Enterobacteria_phage	4.8e-100	96.0
WP_000370551.1\|2743024_2743297_+	hypothetical protein	NA	NA	NA	NA
WP_000193293.1\|2743262_2743607_-	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_000839599.1\|2743611_2743827_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.0e-33	98.6
WP_162721299.1\|2743859_2744003_+	hypothetical protein	NA	NA	NA	NA
WP_024233158.1\|2744139_2744649_-	hypothetical protein	NA	NA	NA	NA
WP_021562591.1\|2744649_2745690_-	hypothetical protein	NA	NA	NA	NA
WP_032342160.1\|2745970_2746792_-	antitermination protein	K7P7B9	Enterobacteria_phage	2.6e-81	60.4
WP_053289978.1\|2746788_2747163_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.7e-35	64.5
WP_053289977.1\|2747175_2748225_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-106	53.4
WP_023141427.1\|2748226_2748499_-	hypothetical protein	I6PCV7	Cronobacter_phage	4.2e-12	50.8
WP_000813254.1\|2748666_2748822_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000753060.1\|2749743_2749920_-	hypothetical protein	A0A2R2X2A8	Escherichia_phage	6.7e-27	94.8
WP_001224662.1\|2749912_2750095_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
WP_000403785.1\|2750188_2750545_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
WP_001151150.1\|2750602_2751025_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.6e-64	90.6
WP_000450662.1\|2751040_2751802_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.2e-117	88.1
WP_000788970.1\|2751824_2752571_-	ATP-binding protein	V5UQI5	Shigella_phage	3.8e-111	78.9
WP_000693797.1\|2753446_2753869_-	phage protein	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
WP_000712069.1\|2753891_2754188_-	toxin YdaS	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
WP_000948459.1\|2754311_2754788_+	DNA-binding transcriptional repressor RacR	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
WP_053289980.1\|2755107_2755263_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_001312793.1\|2755259_2755748_-	superinfection exclusion protein B	NA	NA	NA	NA
WP_000560223.1\|2756189_2756411_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001352098.1\|2756410_2756581_+	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000632297.1\|2756655_2756931_+	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
WP_000166319.1\|2759624_2760434_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_001317028.1\|2760490_2760685_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_063814942.1\|2760677_2760887_+	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	1.8e-26	96.8
WP_000079604.1\|2760965_2761181_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000040858.1\|2761182_2762418_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.6e-239	98.5
WP_001157407.1\|2762469_2763405_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_022645642.1\|2763533_2764907_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-52	33.1
WP_000387388.1\|2765384_2766368_-	zinc transporter ZntB	NA	NA	NA	NA
WP_000628065.1\|2766622_2767855_+	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5

DBSCAN-SWA_7

3627258 : 3692956

Enterobacteria_phage(54.55%)

tRNA,transposase,head,portal,protease,terminase,tail,integrase,lysis,capsid

attL 3635667:3635713|attR 3682759:3682805

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022645324.1\|3627258_3628395_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_022645323.1\|3628592_3630830_+	phage adsorption protein NrfB	NA	NA	NA	NA
WP_063815185.1\|3630816_3633789_+	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_022645321.1\|3633789_3634680_+	DUF4434 family protein	NA	NA	NA	NA
WP_001177457.1\|3634862_3635624_+	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
3635667:3635713	attL	NA	NA	NA	NA
WP_084818532.1\|3636136_3637090_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_000386784.1\|3637339_3638089_-	DNA-binding transcriptional activator AppY	NA	NA	NA	NA
WP_041983107.1\|3638991_3639618_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_046201517.1\|3639672_3640257_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.0e-103	94.8
WP_084818583.1\|3640256_3643220_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.9e-53	91.5
WP_084818531.1\|3643284_3643884_-	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	2.8e-109	98.0
WP_084818530.1\|3643953_3647367_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.6
WP_000090891.1\|3647427_3648060_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_141927173.1\|3647996_3648740_-	C40 family peptidase	K7PLW1	Enterobacteria_phage	9.8e-144	95.1
WP_044861874.1\|3648745_3649444_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.2e-132	98.3
WP_000847345.1\|3649443_3649773_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_084818528.1\|3649769_3652331_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	90.0
WP_000459457.1\|3652323_3652758_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479155.1\|3652739_3653162_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.9e-72	99.3
WP_047624866.1\|3653177_3653918_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	9.5e-131	97.6
WP_000683117.1\|3653925_3654321_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	98.5
WP_053270660.1\|3654317_3654896_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.9e-79	97.4
WP_084818527.1\|3654907_3655261_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	5.8e-62	99.1
WP_000158868.1\|3655272_3655668_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_032140162.1\|3655709_3656735_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.8e-186	96.8
WP_001338090.1\|3656790_3657123_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
WP_022645599.1\|3657132_3658452_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	8.1e-234	98.6
WP_022645598.1\|3658432_3660034_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	8.5e-310	99.2
WP_000198149.1\|3660030_3660237_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_084818526.1\|3660233_3662159_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.9
WP_000453611.1\|3662133_3662679_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_001307652.1\|3663067_3663262_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000738421.1\|3663622_3663916_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001228695.1\|3664006_3664189_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_072795876.1\|3664405_3664903_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	2.3e-88	96.4
WP_000839597.1\|3664902_3665118_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.6e-33	100.0
WP_000737280.1\|3665690_3666788_+	porin OmpC	Q1MVN1	Enterobacteria_phage	6.7e-157	77.1
WP_001204780.1\|3666977_3667361_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_000971071.1\|3667446_3667587_-	YlcG family protein	K7PHH3	Enterobacteria_phage	2.5e-08	69.8
WP_001099655.1\|3667583_3667946_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	7.3e-60	97.4
WP_000774479.1\|3667942_3668233_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_000224907.1\|3668225_3668396_-	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
WP_001054340.1\|3668395_3668851_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	4.1e-60	66.9
WP_001303586.1\|3668847_3668949_-	hypothetical protein	NA	NA	NA	NA
WP_000881075.1\|3669065_3669863_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001306955.1\|3669872_3670424_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_084818524.1\|3670888_3672415_-	recombinase family protein	Q3HQV4	Burkholderia_phage	7.9e-31	27.8
WP_001299444.1\|3672472_3672622_-	hypothetical protein	NA	NA	NA	NA
WP_084818523.1\|3673070_3673337_-	protein ren	A0A0N6WES4	Escherichia_phage	1.5e-33	81.5
WP_060615751.1\|3673333_3674035_-	Replication protein P	M1FJ72	Enterobacteria_phage	4.2e-128	98.3
WP_000147955.1\|3674031_3675051_-	replication protein	A0A0M5M7Y1	Salmonella_phage	8.8e-111	64.1
WP_001400028.1\|3675047_3675587_-	hypothetical protein	M9NZI6	Enterobacteria_phage	1.5e-61	66.7
WP_000184665.1\|3675617_3675845_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	3.8e-22	69.0
WP_000712396.1\|3675955_3676648_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.5e-109	85.3
WP_084818522.1\|3676714_3677578_+	hypothetical protein	M9NYX6	Enterobacteria_phage	1.6e-92	61.8
WP_123057602.1\|3677974_3678265_+	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	85.1
WP_000995455.1\|3678340_3678637_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.1e-49	99.0
WP_000100847.1\|3678642_3679428_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_084818521.1\|3679424_3680105_+	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	1.1e-130	97.8
WP_084818520.1\|3680101_3680284_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	4.5e-26	95.0
WP_000548537.1\|3680256_3680448_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_001443983.1\|3680458_3680740_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000763385.1\|3680838_3681057_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_000488407.1\|3681104_3681383_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_001350488.1\|3681581_3682745_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	8.9e-200	86.6
WP_000805428.1\|3683078_3683711_+	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
3682759:3682805	attR	NA	NA	NA	NA
WP_001255235.1\|3683713_3684229_-	fimbria assembly protein	NA	NA	NA	NA
WP_084818519.1\|3684239_3685247_-	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_022645304.1\|3685259_3687869_-	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_022645303.1\|3687899_3688592_-	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_000776555.1\|3688811_3689354_-	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000729155.1\|3689825_3690692_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000190288.1\|3690693_3690906_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_001143564.1\|3691013_3691535_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_000912345.1\|3691570_3692956_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8

DBSCAN-SWA_8

4614727 : 4660145

Burkholderia_phage(30.0%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298868.1\|4614727_4615765_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_022646425.1\|4616126_4617131_-	DUF2713 family protein	NA	NA	NA	NA
WP_000416263.1\|4617448_4617964_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001296638.1\|4618005_4618215_-	CsbD family protein	NA	NA	NA	NA
WP_001361471.1\|4618330_4619656_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646078.1\|4619728_4620337_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002907.1\|4620446_4620815_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017354.1\|4620985_4623409_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455227.1\|4623563_4624436_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_001308201.1\|4624448_4624946_-	chorismate lyase	NA	NA	NA	NA
WP_022646424.1\|4625168_4626749_-	SopA family protein	NA	NA	NA	NA
WP_000783444.1\|4626976_4627897_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973665.1\|4628139_4629480_-	maltoporin LamB	NA	NA	NA	NA
WP_000179165.1\|4629551_4630667_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	4.3e-18	31.7
WP_000695389.1\|4631031_4632222_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_022646423.1\|4632375_4633920_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252058.1\|4633934_4634825_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000202902.1\|4634918_4635329_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001295279.1\|4635542_4635821_+	periplasmic protein	NA	NA	NA	NA
WP_084818499.1\|4635867_4637964_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_022646421.1\|4637963_4638701_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_001296632.1\|4638697_4639336_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_000757333.1\|4639449_4639692_-	polysaccharide production threonine-rich protein	NA	NA	NA	NA
WP_022646420.1\|4640046_4641696_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_022646419.1\|4642220_4643570_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000619864.1\|4643624_4643972_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.2e-21	49.0
WP_022646418.1\|4644509_4644797_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.9e-16	48.6
WP_000266448.1\|4644799_4645405_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.3e-57	57.1
WP_000777272.1\|4645417_4645732_+	membrane protein	Q5ZQY8	Pseudomonas_phage	9.2e-19	43.2
WP_022646417.1\|4645876_4646332_+	hypothetical protein	NA	NA	NA	NA
WP_000875310.1\|4646328_4646526_+	hypothetical protein	NA	NA	NA	NA
WP_022646416.1\|4646515_4647940_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	7.0e-191	70.2
WP_000907502.1\|4647939_4648464_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
WP_022646415.1\|4648514_4648832_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_015674804.1\|4648791_4648920_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_022646414.1\|4649021_4651397_+	hypothetical protein	A4JWL0	Burkholderia_virus	1.0e-56	26.0
WP_022646413.1\|4651396_4652350_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	3.3e-35	50.8
WP_001269711.1\|4652349_4652559_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	1.3e-16	60.3
WP_084818498.1\|4652546_4653587_+	phage late control D family protein	R9U464	Rhizobium_phage	3.4e-33	31.7
WP_000679403.1\|4653596_4654298_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.4e-12	36.3
WP_022646411.1\|4654396_4654756_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.1e-34	64.2
WP_022646410.1\|4654746_4655862_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	2.0e-100	51.7
WP_022646409.1\|4655854_4656571_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	3.1e-22	37.2
WP_022646408.1\|4656573_4658184_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	3.8e-84	39.1
WP_063815108.1\|4658180_4658888_+	DUF4376 domain-containing protein	A0A0M4RTP2	Salmonella_phage	5.5e-27	50.4
WP_022646406.1\|4658884_4659340_+	hypothetical protein	F6MIM0	Haemophilus_phage	6.6e-26	42.7
WP_022646405.1\|4659353_4660145_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.0e-46	45.1

DBSCAN-SWA_9

4786045 : 4838293

Escherichia_phage(35.42%)

head,portal,protease,terminase,tail,integrase,lysis,capsid,holin,plate

attL 4801943:4801989|attR 4835505:4835551

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208242.1\|4786045_4786576_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293344.1\|4786585_4787917_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_001305044.1\|4787983_4788910_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872908.1\|4789002_4789488_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001296623.1\|4789572_4789818_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084268.1\|4790242_4791088_+	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_000136788.1\|4791110_4792619_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250644.1\|4792753_4793764_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796322.1\|4793860_4794607_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000323555.1\|4794611_4795040_-	universal stress protein UspD	NA	NA	NA	NA
WP_000655986.1\|4795066_4795366_-	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000155257.1\|4795577_4796018_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802226.1\|4796118_4796718_+	YiiQ family protein	NA	NA	NA	NA
WP_001216325.1\|4796825_4797593_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_000708998.1\|4797647_4798403_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001045689.1\|4798509_4799499_-	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_000591795.1\|4799818_4800781_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001076748.1\|4800961_4801864_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4801943:4801989	attL	NA	NA	NA	NA
WP_000468308.1\|4802100_4802319_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_047629917.1\|4802400_4803564_-	phage late control D family protein	M1SV93	Escherichia_phage	1.7e-203	98.4
WP_001471798.1\|4803563_4804043_-\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	1.1e-84	99.4
WP_073534974.1\|4804057_4806505_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	98.8
WP_053879341.1\|4806497_4806617_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	4.0e-15	97.4
WP_001031303.1\|4806649_4806925_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001251408.1\|4806981_4807500_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001286680.1\|4807512_4808703_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.4e-224	99.5
WP_000014361.1\|4809022_4809922_-	hypothetical protein	Q7Y4D2	Escherichia_virus	4.0e-168	99.7
WP_000972099.1\|4810137_4810665_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	5.1e-86	88.6
WP_000104681.1\|4810666_4812688_-\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	3.5e-260	64.5
WP_001285325.1\|4812698_4813229_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_001121500.1\|4813221_4814130_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	6.3e-161	99.0
WP_000127163.1\|4814134_4814482_-	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001093714.1\|4814478_4815114_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.6e-113	98.6
WP_060621266.1\|4815197_4815983_+	hypothetical protein	NA	NA	NA	NA
WP_001695629.1\|4816054_4816507_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	5.3e-76	98.7
WP_000917174.1\|4816499_4816967_-\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	1.9e-81	98.7
WP_001440152.1\|4816929_4817103_-	hypothetical protein	Q7Y4E1	Escherichia_virus	2.3e-24	96.5
WP_000040662.1\|4817074_4817500_-\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	5.5e-67	98.6
WP_000736589.1\|4817487_4817913_-	hypothetical protein	A0A0F7LBP4	Escherichia_phage	1.4e-57	93.6
WP_001144101.1\|4817927_4818425_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123123.1\|4818424_4818706_-\|holin	phage holin family protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_000846415.1\|4818709_4818913_-\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	8.8e-31	98.5
WP_000988633.1\|4818912_4819422_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000203422.1\|4819521_4820265_-\|terminase	terminase endonuclease subunit	Q94MG8	Enterobacteria_phage	2.8e-122	100.0
WP_001248571.1\|4820268_4821342_-\|capsid	phage major capsid protein, P2 family	Q94MI3	Enterobacteria_phage	2.5e-201	99.4
WP_001085948.1\|4821400_4822255_-\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	1.7e-139	89.4
WP_000156845.1\|4822428_4824201_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCM8	Escherichia_phage	0.0e+00	99.8
WP_000038165.1\|4824200_4825235_+\|portal	phage portal protein	M1SV64	Escherichia_phage	4.2e-201	99.7
WP_000368931.1\|4825650_4826724_+	ParB N-terminal domain-containing protein	Q7Y4B3	Escherichia_virus	1.2e-203	100.0
WP_001350076.1\|4826728_4827754_+	hypothetical protein	Q7Y4B4	Escherichia_virus	3.3e-198	100.0
WP_001143634.1\|4827750_4828689_-	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	3.1e-187	100.0
WP_000554771.1\|4828931_4829138_-	hypothetical protein	Q2P9X3	Enterobacteria_phage	2.4e-31	97.0
WP_001696366.1\|4829137_4829590_-	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	1.0e-79	96.7
WP_084818495.1\|4829589_4831875_-	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.2
WP_000027674.1\|4831864_4832140_-	DUF5405 family protein	S4TP00	Salmonella_phage	1.9e-44	97.8
WP_001113271.1\|4832136_4832361_-	TraR/DksA family transcriptional regulator	A0A0F7LDI3	Escherichia_phage	8.5e-35	97.3
WP_074417161.1\|4832360_4832663_-	DUF5405 family protein	U5N0U2	Enterobacteria_phage	2.7e-44	95.0
WP_047335237.1\|4832662_4832887_-	DUF2732 family protein	S4TP68	Salmonella_phage	1.0e-32	98.6
WP_000217670.1\|4832950_4833451_-	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_024210514.1\|4833447_4833645_-	hypothetical protein	S4TNZ7	Salmonella_phage	1.8e-28	96.9
WP_000453534.1\|4833620_4833893_-	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
WP_001192857.1\|4834045_4834339_+	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
WP_000023386.1\|4834408_4835389_+\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	2.3e-185	99.7
WP_001223800.1\|4835574_4836075_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4835505:4835551	attR	NA	NA	NA	NA
WP_001033722.1\|4836224_4836923_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580417.1\|4836919_4838293_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041299

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23765 : 142795

Salmonella_phage(11.54%)

bacteriocin,integrase,tRNA,transposase,protease

attL 103091:103105|attR 145779:145793

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000911333.1\|23765_24164_-\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_000450520.1\|24163_24391_-	toxin-antitoxin system antitoxin VapB	NA	NA	NA	NA
WP_000205749.1\|29763_30510_+	conjugal transfer pilus acetylase TraX	A0A077JBM8	Xanthomonas_phage	8.7e-07	29.7
WP_000704513.1\|30568_31429_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.7e-10	23.5
WP_000139315.1\|31531_32092_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001299730.1\|32227_32440_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_001351576.1\|33063_33270_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_000083845.1\|33553_33811_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001442103.1\|34042_34117_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_001273588.1\|34109_34592_+	hypothetical protein	NA	NA	NA	NA
WP_019842754.1\|34584_35442_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001323889.1\|35738_37316_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.2e-95	99.4
WP_001161490.1\|37625_38186_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_138031477.1\|38189_41156_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	99.9
WP_001132900.1\|42050_42302_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_000222760.1\|42298_42586_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.3e-19	49.5
WP_000255956.1\|43461_44484_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_001513481.1\|44483_45263_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.7e-138	99.2
WP_000661609.1\|47838_48801_-	carbamate kinase family protein	NA	NA	NA	NA
WP_141927140.1\|48827_50378_-	xanthine permease	NA	NA	NA	NA
WP_000084168.1\|50490_51909_-	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_000027750.1\|51908_53456_-	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_000531854.1\|53415_54264_-	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000066154.1\|54349_54955_-	ankyrin repeat domain-containing protein	Q6VZ28	Canarypox_virus	1.7e-05	26.0
WP_001084376.1\|55342_56272_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001334006.1\|56945_57266_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.5e-13	41.0
WP_000536047.1\|59024_59690_+	hypothetical protein	NA	NA	NA	NA
WP_000633743.1\|59747_60038_+	hypothetical protein	NA	NA	NA	NA
WP_000567766.1\|61809_62175_-\|transposase	transposase	Q76S41	Shigella_phage	9.6e-60	100.0
WP_000595317.1\|62426_62816_-	cytochrome B562	NA	NA	NA	NA
WP_000470711.1\|63249_64140_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024188138.1\|64217_65441_-	cytosine permease	NA	NA	NA	NA
WP_001696803.1\|65463_65853_-	hypothetical protein	NA	NA	NA	NA
WP_001696801.1\|65869_66826_-	carbamate kinase	NA	NA	NA	NA
WP_001093931.1\|66818_68243_-	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_000865634.1\|68239_69799_-	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_001442105.1\|69893_70754_-	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000155780.1\|70759_71428_-	cysteine hydrolase	NA	NA	NA	NA
WP_001442107.1\|74106_74295_+	hypothetical protein	NA	NA	NA	NA
WP_000451769.1\|74813_75047_+	HNH endonuclease	NA	NA	NA	NA
WP_000412701.1\|75047_75305_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_000020503.1\|76625_77387_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	8.8e-15	30.2
WP_000110581.1\|77386_78424_-	iron ABC transporter permease	NA	NA	NA	NA
WP_000756335.1\|78423_79422_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000086538.1\|79776_80367_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.2e-24	38.3
WP_000487120.1\|80944_81955_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.1e-20	28.8
WP_000124098.1\|82421_82787_-	hypothetical protein	NA	NA	NA	NA
WP_029402714.1\|82908_84060_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	3.4e-42	35.6
WP_000612591.1\|91333_91681_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_024210439.1\|91677_92058_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.2e-65	99.2
WP_000379710.1\|93109_93379_-	SemiSWEET transporter	NA	NA	NA	NA
WP_001323890.1\|94318_94555_+	colicin V immunity protein	NA	NA	NA	NA
WP_001259758.1\|94532_94844_+	colicin V	NA	NA	NA	NA
WP_001183603.1\|95013_97128_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	4.8e-34	26.5
WP_000489608.1\|97102_98377_-	HlyD family secretion protein	NA	NA	NA	NA
WP_001324224.1\|99058_99256_+	toxin-antitoxin system protein	NA	NA	NA	NA
WP_000969988.1\|99252_99435_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000377483.1\|99533_99842_+	hypothetical protein	NA	NA	NA	NA
WP_001190233.1\|100401_101436_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	1.1e-73	42.6
103091:103105	attL	NA	NA	NA	NA
WP_000271277.1\|104501_105458_-	catecholate siderophore esterase IroE	NA	NA	NA	NA
WP_001442133.1\|106874_110534_-	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	1.2e-45	30.0
WP_001318220.1\|110673_111789_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_000738422.1\|114933_115227_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_164994192.1\|115933_117161_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.7e-175	98.7
WP_000450493.1\|117616_118810_+	GTP-binding protein	NA	NA	NA	NA
WP_001610305.1\|119444_120842_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001610304.1\|121073_121343_+	hypothetical protein	NA	NA	NA	NA
WP_001610303.1\|121342_121810_+	hypothetical protein	NA	NA	NA	NA
WP_001610302.1\|121852_122224_+	hypothetical protein	NA	NA	NA	NA
WP_001610298.1\|124565_126830_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_001610297.1\|126831_127608_-	hypothetical protein	NA	NA	NA	NA
WP_001696614.1\|130003_131374_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_001610286.1\|131377_133318_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.8e-35	39.0
WP_001696612.1\|133314_134502_-	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	6.0e-10	55.7
WP_001595315.1\|136216_136633_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.3e-16	33.6
WP_000280980.1\|137905_138859_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001696610.1\|139290_140400_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_001312822.1\|140468_141371_+	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_001312821.1\|141745_141934_+	hypothetical protein	NA	NA	NA	NA
WP_001066954.1\|142054_142795_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
145779:145793	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041300

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041299

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection