CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP030082	Bdellovibrio sp. ZAP7 chromosome, complete genome	2 crisprs	DEDDh,Cas9_archaeal,csa3,cas3,DinG	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030082_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030082_1

436670-436732

Orphan

Consensus_repeat	Method
GGGCTCCTTGCTTTCGCAAGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030082_1

>merge|NZ_CP030082|1|436670-436732|CRISPRCasFinder
GGGCTCCTTGCTTTCGCAAGTCGCGGATCGGGGGCGGGAGAGCTCCTTGCCTTCGCAAGTCGC

>NZ_CP030082|1|1|436670-436732|CRISPRCasFinder
GGGCTCCTTGCTTTCGCAAGTCGC	GGATCGGGGGCGGGA
GAGCTCCTTGCCTTCGCAAGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030082.1\|WP_142698812.1\|434075_435389_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142698817.1\|439030_439822_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|211337
NZ_CP030082.1\|WP_142698813.1\|435385_436546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP030082.1\|WP_142698805.1\|426628_427033_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP030082.1\|WP_142698806.1\|427314_427821_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142698820.1\|440928_441387_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142698810.1\|432100_432964_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_CP030082.1\|WP_142698822.1\|443672_444068_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142698814.1\|436912_437770_-\|TIGR02147-family-protein	unknown	unknown	gnl\|CDD\|273996
NZ_CP030082.1\|WP_142698811.1\|432947_433955_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP030082.1\|WP_142698823.1\|444263_444797_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142698809.1\|431425_432082_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223248
NZ_CP030082.1\|WP_142698815.1\|437760_438258_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142698808.1\|430071_431292_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP030082.1\|WP_142698818.1\|439937_440378_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP030082.1\|WP_142698821.1\|441420_443544_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_CP030082.1\|WP_142698807.1\|427885_430009_+\|L-sorbosone-dehydrogenase	unknown	unknown	gnl\|CDD\|225044
NZ_CP030082.1\|WP_142698816.1\|438266_438812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142698819.1\|440394_440793_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP030082.1\|WP_142698804.1\|425995_426625_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881

Protein	Function_ID	Function_description	E-value
NZ_CP030082.1\|WP_142698817.1\|439030_439822_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	4.70874e-118
NZ_CP030082.1\|WP_142698813.1\|435385_436546_+\|hypothetical-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	0.000400103
NZ_CP030082.1\|WP_142698805.1\|426628_427033_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	3.92291e-32
NZ_CP030082.1\|WP_142698810.1\|432100_432964_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	2.14827e-60
NZ_CP030082.1\|WP_142698814.1\|436912_437770_-\|TIGR02147-family-protein	gnl\|CDD\|273996	TIGR02147, Fsuc_second, TIGR02147 family protein. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85 and a smaller number in Bdellovibrio bacteriovorus HD100. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized. [Hypothetical proteins, Conserved].	5.13556e-45
NZ_CP030082.1\|WP_142698818.1\|439937_440378_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	6.97673e-79
NZ_CP030082.1\|WP_142698809.1\|431425_432082_+\|hypothetical-protein	gnl\|CDD\|223248	COG0170, SEC59, Dolichol kinase [Lipid metabolism].	7.07414e-12
NZ_CP030082.1\|WP_142698808.1\|430071_431292_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.9342e-46
NZ_CP030082.1\|WP_142698811.1\|432947_433955_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	2.56244e-159
NZ_CP030082.1\|WP_142698821.1\|441420_443544_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NZ_CP030082.1\|WP_142698807.1\|427885_430009_+\|L-sorbosone-dehydrogenase	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	6.60825e-14
NZ_CP030082.1\|WP_142698819.1\|440394_440793_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.50563e-73
NZ_CP030082.1\|WP_142698804.1\|425995_426625_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	1.50093e-38

>NZ_CP030082.1|WP_142698813.1|435385_436546_+|hypothetical-protein
MKSLWLVLVALLAVSIFHTANAQTKTKESAPKEPPFVEESEFDAPPAASVDPLQSETDDAASIENEILQSGGEPVATPPPASNTVDLNKDVPEAGSSLPDDLILEDEAPAIAAPNNEIPSSDAPIEEPVRVKPAPVVYSNEVVRKSPSGGVEYIHHPQAAVGLIRIEKDGTYVYKTKDKGEVKSTGSFRFGAMDAPIIKAADGVTTFETMYSGPSVPVLTFEYEWQPLKISQNLKVQAGFNLMMANGNGRFAESAPGGGTPQAGDKAREEYTFLAIPLNLGLAYRFQYMDRQVFAPYIAGGASYIPVVEYRDDGKNTNMVGTPAGFGGGGLLINVGAMDRETAFTLRSEYGVTNLWVTLDYRYLKSVSEDVDFSSNVITAGVSVDY
>NZ_CP030082.1|WP_142698812.1|434075_435389_+|hypothetical-protein
MRLLKLSALFATSFFLSSVAMAAAFTSVTIGGASYYDLTTTPTKPVIYGGFAGSCTGDGNSTCDSCTGSGLTPCNKNATYPTLILTITLTADTTLPTNGTVTVKIDDTSVQLNSTPYISGSSLTVKMLWSQICSKVQGGTTDCSNAVNSDLVVSISGTGTTTTSISATMQVITSAATTATYADCPEGTPATANTGFCHFTAFPGDSKIYTDPIVSDGYPTSTSGIDFRDLIFFYEEQIPADGNDPATTVGRITNASPTSVIPVSSTVFPPDVDDRLTGLTNGKTYCAVMANRDLAGNIYYFTPATVDPTTLCATPEPVVGLLDDKHCFIATAAFGSDMAPEVQSFREFRNKYLIPYAWGQNFVKTYYKYSPKYAAMISQNETAKIAVRGVLWPLLFFARLSVALGFWFALAITVFGCLTIWGLYRRLILGENVRGEL
>NZ_CP030082.1|WP_142698811.1|432947_433955_+|aspartate-semialdehyde-dehydrogenase
MKRKLKVGVVGATGMVGQTFMTLLAEREFPIAELRPFASENSLGKKIELQGQQWPCQILKEGCFEGLDLVFFSSGDDISAEWAPKAVKAGAFAVDNSAAFRMDPNTVLIVPEVNGHLLNKDSKPQVIANPNCSTIQLVVALKPLSEKFGLDEVRVSTYQAVSGAGQGGYDELMEQTSKATQAQHEPKTFPHTILFNCIPQIGSFNDDGFCSEEVKIMKETRKILGLPQLKVSAFTVRIPALNAHSESVWVTLKKDTTREAITDALASHEGIVVQDDPKRSVYPLAREVSGKDPVYVGRIHRDPEDSKLWMMWVVSDNIRKGAALNGIQIAEQIFF
>NZ_CP030082.1|WP_142698810.1|432100_432964_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MANEHTANSHLDTEEARAQRMHMYIYILPNLMTTGNLFSGFFAVIQSIKGNFEWAAYAIVVAAVFDQLDGRLARLTRSTSKFGAEYDSLCDLVSFGMAPGVLLFLWALQPFGRLGWVACFLFVACGALRLARFNVQANVVEKNYFQGLPIPMAAGIVASSVLAIKDLGLEPSGNYGLLVMAILLALVMVSNFRFRSFKDLDLKERLPFRYLILGVGVLVIVALRPEVMLFVLFMGYAALGAVFGVFRLGKNIRKIRPSVYAPAAVHESDLVEELEEEEEIKKDEKKT
>NZ_CP030082.1|WP_142698809.1|431425_432082_+|hypothetical-protein
MITEGFFNLVDLKKRSDIHYARKIWHMSAVFAMFLAYVYLPKEVSLSLLVIGWLLFVPFDFLRHRYAVLNDFAVHAFKPIMRQSEVKKLAGTTFLLSGVLIVYVIFPRPIVALTLLFLAFADPIASYFGILYGKDKIFGHKSIQGFMAAFFVCAALTLSFLLYHNYLTDRVIVVSLLAGLVGAFAELIPIGKLDDNLTLPLMSAVGLSILFYFFGFFA
>NZ_CP030082.1|WP_142698808.1|430071_431292_+|MFS-transporter
MIKALKQPQLQRLWIGQAFSSIGDEIYRVGLTWFAVNLMGSNTGYLAAGQTASLMLLSFIGGKWADRWNPQQTMYRVDLIRMVIVLIPVMVSFFTDVPLSLLIVMALILSALSAFFDPATQATIPMLAKDLETLQSTNGLMGTTIRGARMVGPAVVGLLAAVVPMIHFFTIDALTFFISALSVRSLKKYLPEHVPPPKARTGFAEAVMSGFRLIQGQSGMMYVFISRALTAGAWNLSIIVGFALLVHQVSGGDARMFGFVMASYGVGNLTGALYFGNRSRAGHRLLFLMYGGYVLWGLGIAAVGFAPTVAWIAVASIFTGFMGPLNDLAFIDLMQRKFPVSDLTKVFRLRMALESLGTLICTLASPWLIQMTSIRAVMVGCGLLWIICGGVGLLLKPLPASSSTSS
>NZ_CP030082.1|WP_142698807.1|427885_430009_+|L-sorbosone-dehydrogenase
MRVLLLAFVICLVQCTSVKNKDADYAQRSAASAKMVLDKSGYLYDPTDRSCDGYPRLMVETMPGTCLGMVLPRDRALDPATNKGFVKPRTILQLPGTEQFLVVDMGGWAPKNGRLFLLKPGAGGNYGLTLIKAGLDNPHGLRMGPDGFIYIGEKNQISKFHFVNGKLADWRLVFGNMPRKEGYMHPLSQFTFDPRNGDMYINSGSPSDHCIVQGTGEYKYCPEDQAQGNGAIYRIPAHLLQKLPPNGVEIFEYAAAGLRNSMAMVVSNAGFLVQGENSRDFPELEEPYEEMNVIDLDKGRVAHYGWPYCYDFHATSPEWEFPENKKLPIHKQFRKPVNCAQASAQGPGEYQPPYILMPPHVAPLHMDYYHGNMFRDSLGGKLLVTWHGYQPSGQRLVAYNVDEKGLPVLDASIAKASYQFNQPGGCPVPKPFQPRGGMDRHASYTEVISKWNEVKGQRPKGAPVAFTEASDGSIWIVEDRENRTIVRLARTQTANFREACDRSVITFDPQVQMLAWRSAVKEDSKLLEGYKGIQSQLIQNYCTGCHGNLEADDIAKDRFSNLDFLVKNGWIAPQDLERSKAYGAIAHLEGYTPMPPADKPQFFGTAEGDRLNKLVSQWVNALPKDIDSSYAKYTAKDKRNIRLQPSTSAKACGQLNPGDIVFIDPRASRVISQDGYKWNRVYLVTAHSRLFKDACPAPEDGVYYIAQ
>NZ_CP030082.1|WP_142698806.1|427314_427821_+|hypothetical-protein
MFKRAASEIQFIAITFILVVLLGARTFASLTEADSVMSEETTMASVVDSNTRTPASLPPTAVAPKKIESSLHQSADVDLNCAKKNGQLEVHAGYVQLKGKSCTSGVRMGEIQIVNKSNGYTASVFDRGSDKYQTDLIQLQPGENEISIRYESSGRQVEEIIRVSSTKI
>NZ_CP030082.1|WP_142698805.1|426628_427033_+|biopolymer-transporter-ExbD
MAMKNGENNDAISDINVVPLVDIILVVLIIFMVTAPMFIKPSINVNLPKAASGDQTAPSKLNISLTADGRINLNGTFVNEEAVRAKATEEVTKNTEVQAIISADKDVPHGKVVGLLDIVKSAGVKKFAISIDKK
>NZ_CP030082.1|WP_142698804.1|425995_426625_+|MotA/TolQ/ExbB-proton-channel-family-protein
MLAEKIFGVAHLADQVVLWLLLVLSILSIGMILERFFALRKVSNESQRVRAKIKLALQSNSVEDIEDLAKDPDSLEGRAAGQAMKYLRTSGSKGLEEIFNTIALSERPDLERYLNFLATLGSNAPYIGLFGTVLGIMKAFNDLATAAEAGQQTVMAGISMALVATAAGLFVAIPAVIAYNYYSKQVRGIFNSLESVKELCLAYAKKKGI
>NZ_CP030082.1|WP_142698814.1|436912_437770_-|TIGR02147-family-protein
MEVAVQAKPANKYPEIARYTCYRAFLRDFFDYKKSLRSGFSYRQFASLVGLKSPNYLQLVIQEKRNLTETTGRRLAEALKLNAKEVNYFEALIRLQNAENDEDRVKAQKNIHACLKKLLAQFVQEDARDILSKWYHLLVREMTLLNDFEPSGEYISKRMSGIINPDEAERSLKFLLNAGYLKNNSGKYEQCDPVLDTGIDIFNHDVMQEYHAQTLKVWSQNIEKLGYKNQELGLLNIPIPKEKLGELQEKIRQFQDEIIAWSQNQKDCNEIVQLGTYLMHFENKK
>NZ_CP030082.1|WP_142698815.1|437760_438258_-|hypothetical-protein
MKRPILLAILLASTTSHAVSRVGGGKVRSLRSGFEASIESLFVTTQSSEQMVRCSGPIGPIRQTKSFSTGTQYFEISEFADEFTNATALSKKQLTDRFEKSQWQEVKKAQCDLTLKQRTSGVVAYIVTWGHGKGFVMKGTDSPDTNRAMDKVLATLKITSECSWK
>NZ_CP030082.1|WP_142698816.1|438266_438812_-|hypothetical-protein
MKLFIGLMTLLIACVSFAKPTKPVYRRALIKVSVFRTELKKVGDMYEYTAEKVCDNQQQIDVWDWRQPTEPTNWENFSISCDSTYNGKKVTALITATAFVNRDYTDEENYDVLTFSTGFLLTDKKTQKITTHFSTMIQSKDLNSNSLMTTLGPKEESICDSSGCTTPPPEKINASVEFIGL
>NZ_CP030082.1|WP_142698817.1|439030_439822_+|tRNA-pseudouridine(38-40)-synthase-TruA
MEKTKVKFTVSYDGTGYCGWQKQKPEDQVSVAQVIEKALSRIFNEPIHLFASGRTDAGVHALNQVCHFTTSRKLDPAKKWDLCWALNSQLPPGIVVKKAWIAPDDFHATLSATHKTYRYLMLNTPRPSAHMNRHAGWERLPIDIEHLQASSKFLLGNQDFKSFQSVGTPVKDTIREIYQADWEWRKPGLLQFTVTGSGFLKQMVRNIVGTSLLLEKQGLSTENMKGIIEAKDRAKAGPPAPAQGLYLMRVYYPKDLDNRCLEL
>NZ_CP030082.1|WP_142698818.1|439937_440378_+|50S-ribosomal-protein-L13
MKTFNAKAEEVERKWWIVDAADQKVGRVATRIATILRGKNKAIYTPNVDTGDFVIVINTDKMELSGTKWDDKTYYRHSRFFGSMKEMTAAQAKVKDSTFIIHEAVRGMLPTNKLSRHVIMKMKTYTGAEHPHAAQKPELLTLPTKK
>NZ_CP030082.1|WP_142698819.1|440394_440793_+|30S-ribosomal-protein-S9
MAAAEKFFYATGRRKTSSARVFLKPGKGTITINGKKSEDYLSRMQSRMVIVQPLDLLNQIGKFDANITVAGGGESGQAGAIRLGITRALIAFNPEFKGTLKKAGFITRDPRMVERKKYGKAGARRRFQYSKR
>NZ_CP030082.1|WP_142698820.1|440928_441387_+|hypothetical-protein
MKLSKYLFSLISLLFFHSIAQASPVNDTGTGIVARAGDCGALNVQEAYFTWFGFHGSLGKALIIKAQIRNDAFEKIVRITHGRGSVEVAENSPSARRLRIEYQGQIGNMDQVELTDRTIGMELSGLYIMSVTMAGVTSECVFQVDRKIAEVR
>NZ_CP030082.1|WP_142698821.1|441420_443544_-|prolyl-oligopeptidase-family-serine-peptidase
MKSFTVSKLLLATLLLAGCKSSSFQKELKSMSQSEQDPYLWLEEVEGAKALDFAKAENDVTIKHFKSNPDFKNIEADYRKIFFAKDRVPAVTLTNGELYNFWQDEKNLRGVWRKTSIASYQTANPKWDVILDLDAVSKTENENWVWKGASFRRPGYDRVLLHLSRGGKDAVVVREFDLKTKSFVKDGFFIPESKTNASWKDQDTLFVGTDWGAGSMTTSGYPRIVKTWKRGTPLTSAETLAEANTTDMSAYAYTLYDEGKPFYFHQIRKGFYSTKLWYHDKSGKAVLVPKPDDAESWSLFKGNLLIELRSDYNGMKAGTLLAVPLDNLELGEKAMSQAQVVFAPTDKRFIEGGCNTKNHMIMVVSNNVLTQMEKVTFTPPNIWKSEPIALGSNGMASCYDGDDDSDTYLATYTDFLTPTSYYMANASDPKNKFTLLKQAAKRFDSSSLTTSRFEATSKDGTKIPYFVVHKKDIKLDGSHPTLQYGYGGFQQSMTPSYLGAFGKVWAEKGGVYVLTNLRGGGEFGPKWHQAVLKENRYKVYEDNIAISEDLIARGFTSAEHLAISGGSNGGLLVGATVTLRPDLYKAAVIGVPLLDMLRYHKLLAGASWMDEYGNPDDPEMRKAILKYSPYQKLSPTAKYPEVFVMTSTKDDRVHPGHARKFVARMKEQKHPVYYYENTEGGHAGNANIEQSILWESLKTTYLWEKLK
>NZ_CP030082.1|WP_142698822.1|443672_444068_-|hypothetical-protein
MKKLIVAALVLAGSTAFADSTVLKCSAPSKGKAATINVTLGDDTSVDFLTMQVTEKTGSSTFFAQLDKGTVANQMKQGYLQMLALTEKSAQTEDGVIRNTGFFGVSSDNKGASFSGFMAANGNIYPVSCTK
>NZ_CP030082.1|WP_142698823.1|444263_444797_+|hypothetical-protein
MNRGWLVILAGCLILGFQNCSQTNLSAADFPSTSSHIVTPSVGGASDADESQTISALEIPVSGGVLSVDASTGRISLLGQNQQVLEESCLPAAEIAELQSYLKSSNICGKSVDASLQCAQVYSSGYASLIIGDQKMNLGESYDSCGRGFKDICGDQAQSFRGLVAYIQKNFHGLLCE

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Crispr_ID: NZ_CP030082_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030082_2

4021494-4021564

Orphan

Consensus_repeat	Method
AGCAAAAAAAGCTACTAAAAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030082_2

>merge|NZ_CP030082|2|4021494-4021564|CRISPRCasFinder
GGCAAAGAAAGCAGCAAAAAAAGCTACTAAAAAAGCAGCAAAGAAAACTACAAAAAAAGTAGCTAAAAAAG

>NZ_CP030082|2|2|4021494-4021564|CRISPRCasFinder
GGCAAAGAAAGCAGCAAAAAAAG	CTACTAAAAAAGCAGCAAAGAAAAC
TACAAAAAAAGTAGCTAAAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030082.1\|WP_142701952.1\|4028476_4029352_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142701944.1\|4020606_4021344_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142701939.1\|4016998_4017475_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP030082.1\|WP_142701936.1\|4013994_4014630_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NZ_CP030082.1\|WP_142701937.1\|4015638_4016337_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|319354
NZ_CP030082.1\|WP_011166112.1\|4027519_4028392_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP030082.1\|WP_142701943.1\|4020181_4020619_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142701948.1\|4023945_4024728_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NZ_CP030082.1\|WP_142701953.1\|4029452_4030730_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239110
NZ_CP030082.1\|WP_142702308.1\|4014682_4015642_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP030082.1\|WP_142701949.1\|4024724_4025453_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NZ_CP030082.1\|WP_142701942.1\|4019939_4020155_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142701951.1\|4026349_4027513_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP030082.1\|WP_142701938.1\|4016333_4016915_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|187726
NZ_CP030082.1\|WP_142701946.1\|4022434_4023211_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NZ_CP030082.1\|WP_142701945.1\|4021756_4022410_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030082.1\|WP_142701941.1\|4018886_4019933_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107204
NZ_CP030082.1\|WP_142701950.1\|4025472_4026240_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NZ_CP030082.1\|WP_142701940.1\|4017711_4018875_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|366438
NZ_CP030082.1\|WP_142701947.1\|4023229_4023949_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777

Protein	Function_ID	Function_description	E-value
NZ_CP030082.1\|WP_142701939.1\|4016998_4017475_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22264e-66
NZ_CP030082.1\|WP_142701936.1\|4013994_4014630_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	1.87518e-16
NZ_CP030082.1\|WP_142701937.1\|4015638_4016337_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|319354	cd16833, YfiH, protein of unknown function YfiH. This subfamily contains YfiH, a protein of unknown function from Shigella flexneri, E. coli, and many similar proteins which collectively are often called DUF152. The structure of YfiH reveals a distant homology to Rho-activating toxins cytotoxic necrotizing factor 1 (CNF1) as well as chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs), all having an invariant Cys-His pair forming a catalytic dyad, and is required by the CNF-1 toxins for deamidation activity.	9.09717e-62
NZ_CP030082.1\|WP_011166112.1\|4027519_4028392_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP030082.1\|WP_142702308.1\|4014682_4015642_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.15958e-98
NZ_CP030082.1\|WP_142701953.1\|4029452_4030730_+\|hypothetical-protein	gnl\|CDD\|239110	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues.	2.88592e-05
NZ_CP030082.1\|WP_142701948.1\|4023945_4024728_-\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	1.7e-56
NZ_CP030082.1\|WP_142701949.1\|4024724_4025453_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	9.12511e-123
NZ_CP030082.1\|WP_142701951.1\|4026349_4027513_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP030082.1\|WP_142701938.1\|4016333_4016915_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|187726	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair. Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site. AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with other BER glycosylases and is structurally distinct from them.	3.25133e-84
NZ_CP030082.1\|WP_142701946.1\|4022434_4023211_-\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	9.08482e-23
NZ_CP030082.1\|WP_142701941.1\|4018886_4019933_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	3.28363e-158
NZ_CP030082.1\|WP_142701950.1\|4025472_4026240_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	8.37089e-121
NZ_CP030082.1\|WP_142701940.1\|4017711_4018875_-\|cystathionine-gamma-synthase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP030082.1\|WP_142701947.1\|4023229_4023949_-\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	3.85248e-66

>NZ_CP030082.1|WP_142701944.1|4020606_4021344_-|hypothetical-protein
MITFFMLSMIGQALVQRSLANIAREFAISQRSLRSLMILNFFAIVLIAAISDSTVSLWLFFGILLISLKFFPDFFRIFLIQRLSRAVIPVLDNLVLGIQAGKSFRQSLHMAIESQSGWQRNQLREIYNSIVTSENKIAAKSAVIKDLQSDLLEIDRSQTRALDQAKALRRQYKVEENFRRRSGQVTQQIKMQAIIVTALYGALLAFVFAQFGFMNHRFLILGSLFMFVLGLFIIFSVGRRMKWKV
>NZ_CP030082.1|WP_142701943.1|4020181_4020619_-|hypothetical-protein
MEGVAPPLSLLLCVKRGLEKGQPTKSGVLHYLKRYQGEFPEQVSRWLALLQQGKDTHGLIKEISSPHRQVVLQLLERGLRGEAIYNVIVSLEDELIEACQEEISTKLARLPFLLLIPLLLFQFPAFLLLLFGPLLQNFFHSLGGG
>NZ_CP030082.1|WP_142701942.1|4019939_4020155_-|hypothetical-protein
MAELETKKKTVTLEKLVSELMKDQPNGNLVKQLTSELGMDYSVDPMTQMNTVLQSMNTVLLQPNRRRDLES
>NZ_CP030082.1|WP_142701941.1|4018886_4019933_-|pyridoxal-phosphate-dependent-enzyme
MSQIYNSILETIGNTPIVELHNVAKGSKHKFFAKVEYFNPGGSIKDRVAVAMIEEAEKRGDLKPGGTIVEATSGNTGVGLALAAVIKGYKCIFVMPEKMSEEKRAILKAYGAQVVITPMVEPDHPLSHYNVSKKIADGVPGGFLVNQYHNKDNPARHYKTTGPEIWKQTDGKVDVIVGGAGTGGTLSGCAKYLKEQKASVKVICADPIGSILYDLFYHKKIVDPPGSYKVEGIGEDMLPDNVHLDIYDGFVRVSDPEAFAMTRRLVAEEGLLVGPSSGTAMVAAMKYAETLEKPSNIVVIFPDSGRQYLSKAFNDQWMVENSFLKAEDTKNVFNRVVSAEEALKNLSK
>NZ_CP030082.1|WP_142701940.1|4017711_4018875_-|cystathionine-gamma-synthase
MKTTDSKLGFATRAIHAGQAPDPTTGAIMTPVYMTSTYVQSSPGVHKGWEYSRTHNPTRRAYENCMASLESGKYGFAFASGCAATTVILHLIKGGDHVIAMDDMYGGTFRLFDKVLRHDGMEFSFIDLTKVENFEKAIKPNTKMVWLETPTNPTLKLVDIKKICAIAKAKGIIVAVDNTFMSPYFQRPLELGADIVVHSATKYIGGHSDVVGGVAVTSREDIAERMAFLSNSMGPIQGPFDSFMCLRSLKTLPLRMKAHQENAMAIARFLEGHSKVEKVIYPGLESHPQHALAKEQMHGYGGMITFYIKGGIEAARKFLESVEIFALAESLGGVESLIEHPAIMTHASVPAENRKALGIDDTLIRLSVGIEDLTDLLSDLKSAFDKV
>NZ_CP030082.1|WP_142701939.1|4016998_4017475_+|DNA-starvation/stationary-phase-protection-protein
MKINIGINDKDRKEIAKGLSTLLADTYTLYLQTHNFHWNVEGPMFQTLHLMFETQYNELALAVDLIAERIRALGHYAPGTYAEFSKLSSIKEVPGEKLSATKMIETLVLGQETVARTARGLFAVVEKASDEPTADLLTQRLQVHEKTAWMLRSLLEKK
>NZ_CP030082.1|WP_142701938.1|4016333_4016915_+|DNA-3-methyladenine-glycosylase
MSIIPQDFYFEDTTSVAKSLLGKTLHIKTTGQEQLARIVEVEAYLGIQDPACHTFGGRQTPRVKSMYLSGGHSYVYMIYGMYNCLNIVTRTEEHPEAILIRAVEPLPLSATFNKSMLVSNGPGKLCRHYEITKEHDGVALWRKNSPLYLSDDGLNIPKSQIVSKPRIGVDYAGEAAEWPLRFYIANSKFVSKK
>NZ_CP030082.1|WP_142701937.1|4015638_4016337_+|peptidoglycan-editing-factor-PgeF
MNIERTPLGYEIKNSHVTYFFGGKESQIQNLKAAYPHFDFVRVKQTHSDIVVESKDASLDYQVNADGHISSARYLALCVVTADCVPALFYHAKSGTIAGVHAGWRGVANRILINTIRDMVKRGIPPQEIEVAIGPHIQKDSFEVGHDVRDQILASLLETSREEKEMFYTDLSTEKSLVDINLIVKAQLESQGISLENVSTLHIDTVKDQFFHSHRRDKEQAGRQISFVVRTP
>NZ_CP030082.1|WP_142702308.1|4014682_4015642_+|RluA-family-pseudouridine-synthase
MVGLRLDKALTLLPEVETRSRASHLIENSLVKVNGKVAKASLALKATDQLEITLPAPVPTELQSYDLKLDVLFEDSDVIVINKPAGLVVHPAAGHAHDTLVNALISHTDDLSMKFGEERPGIVHRLDKETSGIIVVAKNDKAHESLTSQFKERSTHRIYYAVTIGTARNLSGTIKSFLARHPVDRKKYASVVGDDRRPLQDQEDPPMVGKWAVTHYETVNRKSGLSYMKLKLETGRTHQIRVHLSENGLPIAGDTLYGADRKIKSVEQRQIQEDLRALPRFLLHAAELGFTHPRTQERMFFKQDWPEDILSLIKKWGLV
>NZ_CP030082.1|WP_142701936.1|4013994_4014630_+|helix-turn-helix-domain-containing-protein
MEATTRSNYYEILELPANSPQHEVTAAYERARNTYSGENPAIYTIFSEHEAREFLVLIEEAYQVLGNKILRNIYDQRLLSGMASLNDLTYASIVEASKKVAPVEVKATEKKPAAAYTKDEKFEAEIKAQENWTGDFLKKVREYKGITVERMSEITKINAWYVKAIEKTEPDNLPAVVFVRGYVVQIARALGVDDKKAADSYMKTFKQALGK
>NZ_CP030082.1|WP_142701945.1|4021756_4022410_-|hypothetical-protein
MFSRFTGVAAIILLASSTSLAEISTSNLSADSSSISSKAISIEQDYSQSMRAERLGMTYASTLNMREARKVGVGMSVGGQLGLVGIATEFNFEDENGVVAGFGTGPGYNSIQFAWKHAFDGDYIAPYYTAGYSRWYNSMGNSGSWKESGILDRVLTAEEKKSGRFGTDFLNASLGLQYNQLSGDFAGISCFAEVVAMYEVKRSQLIPSGTFGALYYF
>NZ_CP030082.1|WP_142701946.1|4022434_4023211_-|MCE-family-protein
MKVETKVGLLALVSLIMVAAFAYAMGFIAPFSNTKELNVMFNFAGGIEEGSPVRVMGIKVGKVKSITFDPEHKMADGEEVKLRLTITIDKKAWTSVRKDSKFYINLAGVIGEKFLEISPGNAAAGEFANGDYVRGEDPPRIDQLLSQGYGLAGKVIEILEKNEGSVTNTIKQLDALTTNFNRTLVLLDKTTKNREVSRLLDNAVKISDDMAYFTTNLRSKKAEDTYDLVHKLLFRLEPMDAPAIKKFLQEEGVRARIF
>NZ_CP030082.1|WP_142701947.1|4023229_4023949_-|ABC-transporter-permease
MMTLLADTFWGTFTGPFRRKEFFQQLYFVANRSLFIIVFCVCFAAVVTILESSFHMKMVIQNDAMVPGFAAVLILRELAAIVTALLLCSRVGAGYASEVGTMQITEQIDALKMLGIDPINYLVIPRFFACVLGGILLTVVSNMTCLFAAMMISQAYLGYTPGMFISSMHRFVQFKDVLFAVIKGACFGGVIPLVACYFGFNCQQGAEGVGKATTNTVVVASIAIIVIDFILSYTFSYLY
>NZ_CP030082.1|WP_142701948.1|4023945_4024728_-|ABC-transporter-permease
MIALTVHILDEIGGTLLFLQKILSTIFVKKLKTHEIFVQIWKVSTESFPTTAMAGFFVGAIMAVQFAMPIREFGALGFLGGLATSATFREVGPMLIAFMLSGKVGAFTSAELGTMRVTEQIDAVRCLGADPMQEIIVPRFIGIVISSFFLLAAGLMMSVFGGMALSQAFAGVTPEEYTRHIPTIVHPLSILSGMLKSLVFAIVLATICTYKGYTTTGGAKGVGRAVVATAVTTMICIVVMDWFTSFLGDVILQMVRGYRS
>NZ_CP030082.1|WP_142701949.1|4024724_4025453_-|ATP-binding-cassette-domain-containing-protein
MIEFKKIVKRFGDRTVLNGLSAVIREGEIVFILGTSGTGKSVLLKNLVGLLTPDEGEIWIDGEEVSKFSEEQYLPIRKKCGMVFQHPALFDSLTIFENVAFGLRRQYQFPEEVIKEKVLKALRLVHLRDVEDKLPAQVSYGMQKRVSLARTIALDPKILLFDEPTTGLDPVTTTAVNQLILDLSRSLKTTSIVVSHDMNCALSVADRIIVLDKGQIVAMGTPAELKKSEVPLVQDFLAEVLA
>NZ_CP030082.1|WP_142701950.1|4025472_4026240_-|ATP-binding-cassette-domain-containing-protein
MTSALRLENVTVTFDSQVVLRSVNLDIKSGEAFVIVGPSGQGKTTLLKTLSGLVTPQDGRVFVEQNDWLTLSNKERLPLLKKMGILFQKNALFDSLTCLENICFPLRETTQLTEWEITKKAESFLDAVGIPHARDLYPDEISGGMQKRLGIARALALDPKIIFYDDPTAGLDPITSKKIISLIKTLQQQNNSTVVAITNDMNRAYQMADRIAMVVDQEVIVTGTPKETENHSDPRVRQFVRGLLQGPLTALDPVL
>NZ_CP030082.1|WP_142701951.1|4026349_4027513_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNIHEYQAKEVLRKFGVATLKGKLAHSPEEAVAAAKEIGGSVWVVKAQIHAGGRGKGGGVKVAKSLDEVADYTKKMIGMTLVTHQTGPEGKVVQKVFIEQGCNIAKEYYVACLIDRATGRAAMMASSEGGMDIEEVAEHNPNAIKKVDIDPTVGLMPFQARELAFQIGMAPEIVNKAVKFFSGLYNAFIATDCSIAEINPLVVTKEGDVLCLDAKMNFDSNSLFRHPDIVEMRDLNEEEPSEIEASKFDLAFIKLDGNIGCLVNGAGLAMATLDIIKLHGAEPANFLDVGGGANKEKVTEAFKIILKDKNVKGILVNIFGGIMKCDIIAEGVIAASKELGLKVPLVVRLEGTNVELGKKMLKESGLNITPADNLTDAAKKIVAAIKG
>NZ_CP030082.1|WP_011166112.1|4027519_4028392_+|succinate--CoA-ligase-subunit-alpha
MAILINKNTKVICQGFTGAQGTFHSEQALAYGTKMVGGVTPGKGGTTHIGLPVFNTVKEAKAATGCNASVIFVPPPFAADSIMEAVDADLDLVICITEGIPVLDMVKVKEYMKGKRTRLVGPNCPGVITPGECKIGIMPGHIHKPGRIGVLSRSGTLTYEAVGQLTALGIGQSTCVGIGGDPVNGTNFIDVLKLFNEDPDTDGVIMIGEIGGTAEEEAAEYIKAHFKKPVTAFIAGAAAPAGKRMGHAGAIISGGKGTAEAKFKALEAAGCKISRSPADMGTTMQSMLKK
>NZ_CP030082.1|WP_142701952.1|4028476_4029352_-|hypothetical-protein
MKLNFLLSLGLHALLGAAFFFVSFNHELPKKEVIQFEIQTPSAKPKLDFAGSAPNAGKKSGNTPKTKGSNLNLFGSGYVTDSNVKPLSDIDRPVADYKDHANYIGDAEGFISDGNQWSYFQQVFKKIDEQLLFDSLLAQYGHFGNVYVEFEVDDKGHFVQSGLKVTADDAILKVHALRALIKGLRESFDKTKWNPTGKSQIFQAHFSFIYEKYGNNSSKQTAFAKPVLKFTRTTGESPIPTNLQDQLLTGGIDYDLFAAAERWQKYNKRKKLREQEFDPFSTYKSDPLYKL
>NZ_CP030082.1|WP_142701953.1|4029452_4030730_+|hypothetical-protein
MRTLIVLLIFVLNSTALAASTACVNAEKTLREMNAEIFGEKSSHIDMTEKVKQAMELVKGCKVSLRKLGVPDTIYTDALESNRRDEITRRKFILALYATSGKIDSQLESFKQYMIRTKDINPEKTEKFLTEMKSKSDQSFATESKSCTAIDLRDKTGPVRNQGTDGWCYAFTVANMVSWKSGKEISAAGVAFGYTDNGYHDLYRMIGMTQDQITNQGFTTAAFRASKPGGFCLESELPSEGFNGINTNVPLAFLDKLGKKAVGGKISEEEFIKVAKTMFPNLSKEQFSEIIKKSSKSTYFNTLVRKSCEHRVSADGMEMSFFTNFNSEKFGKQIEKHLEQGTPVEIGYNADFFAHPYSPSGNAYHSSLLVGRRMNTKTGQCEYLLKNTYGTTWKPAAAEFDSADGYAWVPKSRMIEATRNASYVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	MN693001	Marine virus AFVG_117M47, complete genome	4930-4954	2	0.92
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	21741-21765	3	0.88
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	105584-105608	3	0.88
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	347287-347311	3	0.88
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	34679-34703	3	0.88
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	5264-5288	3	0.88
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	417290-417314	3	0.88
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	356689-356713	3	0.88
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	413356-413380	4	0.84
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	MN694372	Marine virus AFVG_250M1157, complete genome	26350-26374	5	0.8
NZ_CP030082_2	2.1\|4021517\|25\|NZ_CP030082\|CRISPRCasFinder	4021517-4021541	25	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	121896-121920	5	0.8

1. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to MN693001 (Marine virus AFVG_117M47, complete genome) position: , mismatch: 2, identity: 0.92

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctgctaaaaaagcagaaaagaaaac	Protospacer
**.************ *********

2. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 3, identity: 0.88

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaacaagcaaagaaaat	Protospacer
***********  ***********.

3. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 3, identity: 0.88

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaacaagcaaagaaaat	Protospacer
***********  ***********.

4. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 3, identity: 0.88

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaacaagcaaagaaaat	Protospacer
***********  ***********.

5. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 3, identity: 0.88

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaacaagcaaagaaaat	Protospacer
***********  ***********.

6. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 3, identity: 0.88

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaacaagcaaagaaaat	Protospacer
***********  ***********.

7. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 3, identity: 0.88

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaacaagcaaagaaaat	Protospacer
***********  ***********.

8. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 3, identity: 0.88

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaacaagcaaagaaaat	Protospacer
***********  ***********.

9. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
ctactaaaaaaggagcaaagcaact	Protospacer
************ ******* ** .

10. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to MN694372 (Marine virus AFVG_250M1157, complete genome) position: , mismatch: 5, identity: 0.8

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
gatctaaaaaaacagcaaagaaaag	Protospacer
   ********.************

11. spacer 2.1|4021517|25|NZ_CP030082|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 5, identity: 0.8

ctactaaaaaagcagcaaagaaaac	CRISPR spacer
tcgctaaaaaagcagcaaacaaaaa	Protospacer
...**************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

765910 : 778224

Bacillus_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142702091.1\|765910_768472_+	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	1.5e-119	36.9
WP_142699106.1\|768546_768735_+	hypothetical protein	NA	NA	NA	NA
WP_142699107.1\|768895_769069_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_142699108.1\|769125_770097_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_142699109.1\|770109_770616_-	hypothetical protein	NA	NA	NA	NA
WP_142699110.1\|770758_771358_+	riboflavin synthase	A0A1V0SE20	Indivirus	8.2e-24	37.3
WP_142699111.1\|771362_772493_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2I2L4Y7	Orpheovirus	9.6e-42	33.0
WP_142699112.1\|772492_773062_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-16	45.0
WP_142699113.1\|773094_775290_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	5.1e-15	28.2
WP_142699114.1\|775304_776681_+	sigma 54-interacting transcriptional regulator	W8CYM9	Bacillus_phage	3.3e-12	33.1
WP_142699115.1\|776724_778224_+\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	1.9e-85	35.9

DBSCAN-SWA_2

2847567 : 2900643

uncultured_Mediterranean_phage(20.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142700932.1\|2847567_2847912_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-14	49.5
WP_142700933.1\|2847908_2850239_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A2I7SAX5	Vibrio_phage	4.7e-160	42.6
WP_142700934.1\|2850338_2851238_+\|protease	protease HtpX	NA	NA	NA	NA
WP_142700935.1\|2851286_2853374_+	transglycosylase SLT domain-containing protein	I1VXB7	Halocynthia_phage	8.9e-09	27.9
WP_142700936.1\|2853383_2853893_-	hypothetical protein	NA	NA	NA	NA
WP_142700937.1\|2854009_2855377_+	S8 family serine peptidase	A0A2K9L1P3	Tupanvirus	5.3e-18	35.9
WP_142700938.1\|2855445_2856177_+	glycosyltransferase	NA	NA	NA	NA
WP_168196657.1\|2856173_2857646_+	hypothetical protein	NA	NA	NA	NA
WP_168196658.1\|2857617_2858271_+	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA
WP_142700940.1\|2858304_2859156_-	hypothetical protein	NA	NA	NA	NA
WP_142700941.1\|2859156_2860803_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_142700942.1\|2860780_2863114_+	endonuclease MutS2	A0A076FGT9	Aureococcus_anophage	1.3e-05	26.3
WP_142700943.1\|2863131_2864568_+	lipase maturation factor family protein	NA	NA	NA	NA
WP_142700944.1\|2865368_2867117_+	hypothetical protein	NA	NA	NA	NA
WP_142700945.1\|2867428_2868472_+	hypothetical protein	NA	NA	NA	NA
WP_142700946.1\|2868966_2869773_+	hypothetical protein	NA	NA	NA	NA
WP_142700947.1\|2869847_2871017_-	MFS transporter	NA	NA	NA	NA
WP_142700948.1\|2871020_2871878_-	peptidase	NA	NA	NA	NA
WP_142702231.1\|2872094_2872379_+	hypothetical protein	NA	NA	NA	NA
WP_142700949.1\|2872775_2873087_+	hypothetical protein	NA	NA	NA	NA
WP_142700950.1\|2873119_2874403_+	hypothetical protein	NA	NA	NA	NA
WP_142702232.1\|2874442_2874712_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_142700951.1\|2874864_2875107_-	hypothetical protein	NA	NA	NA	NA
WP_142700952.1\|2875218_2875827_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_142700953.1\|2876136_2877132_+	NAD-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_142700954.1\|2877232_2877697_+	hypothetical protein	NA	NA	NA	NA
WP_168196659.1\|2878611_2879808_-	sensor histidine kinase	NA	NA	NA	NA
WP_142700956.1\|2879965_2880865_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_142700957.1\|2880951_2881443_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_142700958.1\|2881439_2882027_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_142700959.1\|2882140_2885092_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_142700960.1\|2885285_2885846_+	hypothetical protein	NA	NA	NA	NA
WP_142700961.1\|2885868_2887557_+	hypothetical protein	NA	NA	NA	NA
WP_142700962.1\|2887560_2888379_-	TIGR02147 family protein	NA	NA	NA	NA
WP_142700963.1\|2888578_2889418_+	hypothetical protein	NA	NA	NA	NA
WP_142700964.1\|2889420_2890191_+	hypothetical protein	NA	NA	NA	NA
WP_142700965.1\|2890196_2890667_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_142700966.1\|2890741_2891053_-	RNA-binding protein	NA	NA	NA	NA
WP_142700967.1\|2891399_2891846_+	hypothetical protein	NA	NA	NA	NA
WP_142700968.1\|2891842_2892307_+	hypothetical protein	NA	NA	NA	NA
WP_142700969.1\|2892372_2892735_-	hypothetical protein	NA	NA	NA	NA
WP_142700970.1\|2893214_2893745_+	hypothetical protein	NA	NA	NA	NA
WP_142700971.1\|2893795_2894677_-	nuclease	NA	NA	NA	NA
WP_142700972.1\|2894781_2895729_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_142700973.1\|2895725_2896937_-	RDD family protein	NA	NA	NA	NA
WP_142700974.1\|2896976_2897597_-	hypothetical protein	NA	NA	NA	NA
WP_142702233.1\|2897819_2898944_-	PDZ domain-containing protein	NA	NA	NA	NA
WP_142700975.1\|2899121_2899565_-	hypothetical protein	NA	NA	NA	NA
WP_168196660.1\|2899761_2900643_-\|protease	trypsin-like serine protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP030082

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection