CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP035381	Leclercia adecarboxylata strain R25 plasmid pLA-64, complete sequence	0 crisprs	RT	0	1
NZ_CP035382	Leclercia adecarboxylata strain R25 chromosome, complete genome	4 crisprs	RT,DinG,cas3,DEDDh,csa3,WYL	1	4
NZ_CP035380	Leclercia adecarboxylata strain R25 plasmid pLA-109, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7605 : 57650

Escherichia_phage(22.73%)

transposase,integrase

attL 24317:24332|attR 58896:58911

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000845048.1\|7605_8619_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_063840321.1\|8910_9465_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001749986.1\|9561_10014_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_001749985.1\|10146_10620_+	trimethoprim-resistant dihydrofolate reductase DfrA27	G3MBI7	Bacillus_virus	1.4e-15	29.1
WP_001749984.1\|10800_11646_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA	NA	NA
WP_000679427.1\|11762_12110_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|12103_12943_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|13347_14889_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001749993.1\|15353_16262_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.5e-77	52.3
WP_001749994.1\|16353_16998_-	quinolone resistance pentapeptide repeat protein QnrB6	NA	NA	NA	NA
WP_000679427.1\|17228_17576_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|17569_18409_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_001993321.1\|18338_18518_-	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|18536_19037_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001297012.1\|19342_19456_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|19543_20308_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_024139167.1\|20349_20562_+	hypothetical protein	NA	NA	NA	NA
WP_001749969.1\|20574_21783_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|21816_23250_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_001749967.1\|23631_23838_-	hypothetical protein	NA	NA	NA	NA
WP_071549088.1\|23842_24355_-	restriction endonuclease	NA	NA	NA	NA
24317:24332	attL	NA	NA	NA	NA
WP_001067855.1\|24379_25084_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071549086.1\|25029_25290_-	hypothetical protein	NA	NA	NA	NA
WP_001039463.1\|25846_26233_+	hypothetical protein	NA	NA	NA	NA
WP_000861580.1\|26241_26433_+	hypothetical protein	NA	NA	NA	NA
WP_000807690.1\|27430_28186_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
WP_094686391.1\|28186_28381_+	hypothetical protein	NA	NA	NA	NA
WP_094686392.1\|29852_31034_-	DUF4268 domain-containing protein	NA	NA	NA	NA
WP_032621004.1\|32350_33397_+	hypothetical protein	NA	NA	NA	NA
WP_032413492.1\|33393_35202_+	ATP-binding protein	NA	NA	NA	NA
WP_000493378.1\|35826_36177_+	hypothetical protein	NA	NA	NA	NA
WP_000129823.1\|36227_36971_+	hypothetical protein	NA	NA	NA	NA
WP_000015958.1\|36967_37744_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
WP_000764642.1\|37801_38059_-	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|38826_39693_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_000339857.1\|40049_40319_-	hypothetical protein	NA	NA	NA	NA
WP_000368714.1\|40733_41939_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_012600007.1\|41935_42913_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_004118291.1\|42994_44266_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_000776034.1\|44265_44697_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_009483812.1\|44854_45106_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|45105_46590_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_032419551.1\|46582_46852_+	hypothetical protein	NA	NA	NA	NA
WP_001776122.1\|47059_48025_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.6e-58	42.7
WP_001776120.1\|48504_48936_+	hypothetical protein	NA	NA	NA	NA
WP_001776119.1\|48968_49496_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.7e-21	39.5
WP_001166628.1\|49755_50211_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004200999.1\|50282_50648_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|50663_50939_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|50966_51392_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|51430_53116_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|53133_53499_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|53495_53732_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|53715_53835_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|53797_54010_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|54135_54696_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_015344976.1\|54698_57650_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
58896:58911	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP035382

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP035382_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035382_1

785744-785838

Orphan

Consensus_repeat	Method
GTCCGGGCGGGATATGACCCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035382_1

>merge|NZ_CP035382|1|785744-785838|CRISPRCasFinder
GTCCGGGCGGGATATGACCCTGACCGGGGCGCAGGTGATCGCCAGCGGCGAGAACGGCAAAGCGCAGCTGGTGGCCGGGCGGGATATGACCCTGA

>NZ_CP035382|1|1|785744-785838|CRISPRCasFinder
GTCCGGGCGGGATATGACCCTGA	CCGGGGCGCAGGTGATCGCCAGCGGCGAGAACGGCAAAGCGCAGCTGGT
GGCCGGGCGGGATATGACCCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035382.1\|WP_142486812.1\|770780_771653_+\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|226076
NZ_CP035382.1\|WP_142486825.1\|790633_790864_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035382.1\|WP_142486817.1\|776855_777308_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP035382.1\|WP_142486814.1\|773131_774142_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NZ_CP035382.1\|WP_142490016.1\|793205_793748_+\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|378155
NZ_CP035382.1\|WP_142486820.1\|778586_780266_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP035382.1\|WP_142486815.1\|775338_776325_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235935
NZ_CP035382.1\|WP_142486830.1\|794700_795261_+\|Ail/Lom-family-outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|185153
NZ_CP035382.1\|WP_142486829.1\|794150_794486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035382.1\|WP_142486826.1\|790962_791208_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035382.1\|WP_142486831.1\|795365_796247_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176166
NZ_CP035382.1\|WP_142486816.1\|776334_776859_-\|2-oxo-tetronate-isomerase	unknown	unknown	gnl\|CDD\|235149
NZ_CP035382.1\|WP_142486827.1\|791434_791854_+\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|379649
NZ_CP035382.1\|WP_142486824.1\|790026_790509_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035382.1\|WP_142486818.1\|777317_777830_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035382.1\|WP_142486821.1\|780265_780814_+\|toxin-activating-lysine-acyltransferase	unknown	unknown	gnl\|CDD\|367187
NZ_CP035382.1\|WP_142486813.1\|771728_773132_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP035382.1\|WP_142486819.1\|777972_778365_+\|YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|182212
NZ_CP035382.1\|WP_142486823.1\|789400_789733_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179812
NZ_CP035382.1\|WP_142486828.1\|792246_792708_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP035382.1\|WP_142486812.1\|770780_771653_+\|manganese-catalase-family-protein	gnl\|CDD\|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	9.14835e-128
NZ_CP035382.1\|WP_142486817.1\|776855_777308_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	9.78041e-32
NZ_CP035382.1\|WP_142486814.1\|773131_774142_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	1.75895e-101
NZ_CP035382.1\|WP_142490016.1\|793205_793748_+\|SMI1/KNR4-family-protein	gnl\|CDD\|378155	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1). Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.	0.00145898
NZ_CP035382.1\|WP_142486820.1\|778586_780266_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	0
NZ_CP035382.1\|WP_142486815.1\|775338_776325_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235935	PRK07109, PRK07109, short chain dehydrogenase; Provisional.	2.76288e-145
NZ_CP035382.1\|WP_142486830.1\|794700_795261_+\|Ail/Lom-family-outer-membrane-beta-barrel-protein	gnl\|CDD\|185153	PRK15240, PRK15240, resistance to complement killing; Provisional.	1.47728e-40
NZ_CP035382.1\|WP_142486831.1\|795365_796247_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176166	cd08477, PBP2_CrgA_like_8, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 8. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.14638e-97
NZ_CP035382.1\|WP_142486816.1\|776334_776859_-\|2-oxo-tetronate-isomerase	gnl\|CDD\|235149	PRK03657, PRK03657, 2-oxo-tetronate isomerase.	8.3428e-85
NZ_CP035382.1\|WP_142486827.1\|791434_791854_+\|SMI1/KNR4-family-protein	gnl\|CDD\|379649	pfam14567, SUKH_5, SMI1-KNR4 cell-wall. Members of this family are related to the SMI1/KNR4-like or SUKH superfamily of proteins.	5.06389e-29
NZ_CP035382.1\|WP_142486821.1\|780265_780814_+\|toxin-activating-lysine-acyltransferase	gnl\|CDD\|367187	pfam02794, HlyC, RTX toxin acyltransferase family. Members of this family are enzymes EC:2.3.1.-. involved in fatty acylation of the protoxins (HlyA) at lysine residues, thereby converting them to the active toxin. Acyl-acyl carrier protein (ACP) is the essential acyl donor. This family show a number of conserved residues that are possible candidates for participation in acyl transfer. Site-directed mutagenesis of the single conserved histidine residue in Escherichia coli HlyC resulted in complete inactivation of the enzyme.	9.02013e-58
NZ_CP035382.1\|WP_142486813.1\|771728_773132_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP035382.1\|WP_142486819.1\|777972_778365_+\|YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|182212	PRK10053, PRK10053, YdeI family stress tolerance OB fold protein.	2.39971e-82
NZ_CP035382.1\|WP_142486823.1\|789400_789733_+\|hypothetical-protein	gnl\|CDD\|179812	PRK04293, PRK04293, adenylosuccinate synthetase; Provisional.	0.00525857

>NZ_CP035382.1|WP_142486821.1|780265_780814_+|toxin-activating-lysine-acyltransferase
MRVGHLDIKAPLILGGQESEAEVLGATVWLWMHSPMHRDAPLHALPTLLLPIIKRQQYVLVSENDRPIFFLSWAWLNEEAEARYLTRPAIEMREEDWDSGDRIWFCDWIAPFGHTPAMYNLMRRDIFPDHVCRALYHRGAQRGKRVMLFHGSHVSRQHAREWQQNHPLTVSLPEAFKGTNHE
>NZ_CP035382.1|WP_142486820.1|778586_780266_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MKAPHNIALIITSAAGLSLMFPAQAAEPDNQFIIQQQRQRALEQQLTPPVPDVRLSEPSSGFGKIAFPTESPCFPINRVELSGEEALPHWLPLQRIADQAQGRCLGGKGINLLMSTMQNRIVDHGWITTRVLAPSQDLKSGTLKLAIVPGTIRHVKLTEESDDYIQLYSAFPAHEGNLLDLRDIEQGLENLQRLPTVEASMELLPGENPGESDVVIARKQSKMWRIGLSLDDAGTETTGRYQGGVTLSLDNPFSLSDLLYVSASHDLNDKGGKGSKNYTAHYSVPFGYWMLGITGSDYDYHQTVAGLNEDYRYSGKSKNLDIQLSRVLHRSGSQKTTFSYDVLARETRNFIDDTEVGVQRRQTAGWRIGLDHRHYIGQATLDAGISYQRGTRWFGAQPAPEEYWGDATALSKITQLSAQLDLPFAIGTQNFRYNVQYLRQISNTPLTPQDQFAIGNRWTVRGFDGERTLSASHGWYVRNDLAWRTPLPNQEFYLGADYGEVGGYSSDLQVGKHLAGGVAGLRGNAFNTGYDLFAGTPFSKPDGFETSDLTLGFNLNWSW
>NZ_CP035382.1|WP_142486819.1|777972_778365_+|YdeI-family-stress-tolerance-OB-fold-protein
MKLTVAPLLCCLLISAAYADDNGGLKKDAAPPPPHSLDEGYRGTEDARTMTVEQAKEMHDGATISLRGNLIDGSGGDKFKFRDKTGTIDTIIPQAVFDGREVKPDNMISINGSLDKKMNPPVVRVDRIQK
>NZ_CP035382.1|WP_142486818.1|777317_777830_-|hypothetical-protein
MAKVKENSPPLPGVKQSHAALQFEYDAHRFGFVLLLLIIAAALLGLFSGGYFSEATKTNAAKSVQVEYQRFGRLQSPLELKITLPGQSNAPVTVRIGGEYMARTQTDNIWPQPDEMHSEGGELVLVYQEAKPRQDFTVWLYSTPDQPGKTVTTVTLNNQPGLSFWQFIYP
>NZ_CP035382.1|WP_142486817.1|776855_777308_-|DUF421-domain-containing-protein
MEMILRAAAIYLILLVVFKIAGRRALLQMTSFDLILLLIISEATQQALLGEDFSVTGAMLTIITLVVIDMLFGVAKKYISGAESMLDGSPVILVVHGELQNEKLKKVDVSCDDILVSARQNHGIYQLEKIKYAILERNGHISIIPEESES
>NZ_CP035382.1|WP_142486816.1|776334_776859_-|2-oxo-tetronate-isomerase
MKENIWNQAKTTKELTSQVSTVLIDLGWLLTTAESCTGGNVASALCAEKDTASFFGTGVVTFNNEAKHKVLGVSNATLEKYTAVSSQTVGEMAEGALKLADADVSIAISGYAGPDGGEDGTPAGTVWFGWCFRGEVTTAVQHFTGECEDVIEKAVRYALSELLRQIPHWKKQLH
>NZ_CP035382.1|WP_142486815.1|775338_776325_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSVVVITGATAGVGKATALRFAAAGYDVGLIARDDHSLEATRAEVANYGVNCHAVSLDVADAAALSGAAQTLADRLGAIDVWINNAMCTTLAPFYSITDDEFRRVTEVTYLGCVNGTRAALEQMIPRDSGVIIQVGSALAYRSIPLQSAYCGAKAAIRGFTDALRTELMHERSGVHLAMVQMPGLNTPQFDWARNKFAYSMRPVAPVFQPEVAAEAIFGVVQRPVRELWVGRSTIGAIVGQFLFPGFLDRMMVKKAWEGQMDEALNPPDRRNNLTEPVGGEHRIHGRFSPEAKPRAAAMTSGVPGKTLLGTVALAGLLLIGKCLGRRK
>NZ_CP035382.1|WP_142486814.1|773131_774142_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MGVDISVIWFAIIVFATLMYIIMDGFDLGIGMLFYFERDPQARDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIPLTAMLIGLIFRGVAFEFRFKATPSHRAFWDYSFAGGSLLATFSQGIVVGAMINGFDVEGRRFAGSALDWLTPFNLFCGLGLMVAYTLLGTTWLIMKSEGALQRHMRELTRHVLLALLGVVAVVSIWTPLGWQYVSERWFSLPNFFYFMPVPLLVAVFGIWIWRLTRNPHSHARPFLFTLGLIFLGFSGLGISLWPNIIPPRITIWDAAAPPSSQLFMLVGTLLIIPLILVYTAWSYYVFRGKVTDTEGYH
>NZ_CP035382.1|WP_142486813.1|771728_773132_+|cytochrome-ubiquinol-oxidase-subunit-I
MFELDAFHLARLQFAFTVSFHIIFPALTIGLASYLVVLEGMWLKTKNDVWRSLYHFWLKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFFATCMVALGTLMSTFWILASNSWMHTPQGFSIENGQVIPEDWFAIIFNPSFPYRLIHMSIAAFLSSALFVGASGAWHLLRGNDSPAVRKMFSMALWMALLVAPIQAFVGDMHGLNTLEHQPAKIAAIEGHWENPPGEATPLLLFGVPDMEEERTKYGLEIPALGSLILTHSLDKQVPALKDFPKDERPNSLIVFWSFRVMVGLGLLMILMGVISLWLRHRHRLYHSRPFHWFALSMGPAGLVAILAGWITTEVGRQPWVVYGYLRTIDAVSLHSTLQMSISLLAFIVVYCSVFGVGYVYLVRLIKKGPQPTDNLSLNTDGRPARPLSAAEPVPEEEKP
>NZ_CP035382.1|WP_142486812.1|770780_771653_+|manganese-catalase-family-protein
MFRHVKQLQYTVRVAEPNPGLANLLLEQFGGPQGELAAACRYFTQGLGDDDAGRREMLMDIATEELSHLEIIGTLVGMLNKGAKGELAEGTEQEAELYRSLTANGNDSHITSLLYGGGPPLTNSGGVPWTAAYIDTIGEPTADLRSNIAAEARAKIIYERLINVTDDVGVKDALAFLMTREAAHQLSFEKALQSIRNNFPPGKLPPIEQYSTTYYNMSEGDDLRGSWNSDENFEYVADPQPAVDGGDGSAQVSLSKEQAALLKAMASRTESDPKANPLTGAELGAGKKKP
>NZ_CP035382.1|WP_142486823.1|789400_789733_+|hypothetical-protein
MKELDDLHNKIGQLLSDAGPANAKKIITRAKLALDGESCEYEYDYIDQDDHEDWFVPDKLASYDLRLLLVRMRDFHLQNNMTNGKPAWTNCEIIIDIPEGKININFSYND
>NZ_CP035382.1|WP_142486824.1|790026_790509_+|hypothetical-protein
MTNKSLDQLRAGLDCYQSNGYVESNSFNDPNDDALEYLGMLLVDDQPTALKYCQSFLQQSQVNDELKSAALDFLLLSSEWNFAYQYLYSQAERLSIPELEKSFFYFCCDKNEATPYPLPEGLFTKLLARFEVVKNEPDAYFYHLHEAYNDFVKTLSDTQN
>NZ_CP035382.1|WP_142486825.1|790633_790864_+|hypothetical-protein
MATLLELGGYAEWSASIFKLAKKYELDPDDTKHIFLNFYGGMGSLNDLVLYRNGKVLMDENDELAQLRRDLFNLLS
>NZ_CP035382.1|WP_142486826.1|790962_791208_+|hypothetical-protein
MTVKWAHFIDVLGKMENSVEVINLCQAIGETPVISADAGEGKVDMLPGWINGWSKYDYGNHSVHLQYTEHNHLCHETLIKN
>NZ_CP035382.1|WP_142486827.1|791434_791854_+|SMI1/KNR4-family-protein
MANNLNDVIEELKVVSGNERSNIPLPDDDIISKYEGETGFSFSPDYKKLLKEVGNIYYGTIELLSVTEDKKFYGELLTAINDAKELGVPESWLPICEDNGSYYCLDQQGRVQYWTGDGASEEQWPDLAAWVKDVWIDGN
>NZ_CP035382.1|WP_142486828.1|792246_792708_+|hypothetical-protein
MTVEWAHFIDVLGKRENSVEVINLCHAIGESPVISADAGEYNDPDGKTKHYKFYQSGIEMGFRKGCLNHIHFYFGNEDGYSPFTGNFIPGIKGGMDRAFITKLSGKPTLSGEGKVDMLLGWINGWSKYDYGNHSVHLQYTEHNHLCHATLIKN
>NZ_CP035382.1|WP_142490016.1|793205_793748_+|SMI1/KNR4-family-protein
MDDLTALLNNRNGFYGFESALHVFPLETDGEEIGVIDWNDHRLWIDCYDDLAHNAIFFAEDVFGGQFCIKQDGIYTFDPETGSFDYLAPDINEWCKQILEDYEILTGYPLANAWQKKYGSIPAGYRLVPKIPFVAGGEYEPDNLYLEKSAVAMKARANIALQIRDVPDGSNIQLRLIDRD
>NZ_CP035382.1|WP_142486829.1|794150_794486_+|hypothetical-protein
MRESQAIYNDIGSVLIAAAPDNAAKIIARAELSPEDDHCKCEFDYVDSTSGETNWFTAGAQANADLLGLLVELRKFFVDNISSQQPAFWHACEITVDVETLRITIDFKYGD
>NZ_CP035382.1|WP_142486830.1|794700_795261_+|Ail/Lom-family-outer-membrane-beta-barrel-protein
MKKITLAVCVAASLASGAALADNHTVSVGYAQSNVEDFKNIRGVNVQYRYEWDSPVSLVGSFTYMSGDQDEHYYLASDSIKNHIEVKYYSLMAGPAYRLNEFVSLYALGGVARVKADGHTTWVNGGDNYTERNGIDEKSTSFAYGAGVQFNATPDLAIHVGYEGTTADLGDDYGINGWNLGVGYSF
>NZ_CP035382.1|WP_142486831.1|795365_796247_-|LysR-family-transcriptional-regulator
MDKLRGMETFIAVVESGSFTGAAARLEMSAVMVGKYIAWLEAQLGTRLLERNTRRQSLTDAGRVWFEEAKRVIEQVAIAERSVERLRTAPAGTLRVTAPTSFGGCVIAPLTATFLQRFPEVRVELDLTNRMVDLVEEGVDLAIRIGDIHTGDLVAKYLCPYRMVICAAPDYLARHGTPQTPDDLVEHLCLSHTVWTARNEWRLPGVEGEVRWKRDAILRCNDGYGLRMAAIAGAGLLLQPEVLVADELANGRLIRVLESYTPQPRPVHLLWRQDLRPLPKLTQFIAHIMQAGE

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Crispr_ID: NZ_CP035382_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035382_2

970007-970088

Orphan

Consensus_repeat	Method
GTCAAAGGCAAGGTTTGTAGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035382_2

>merge|NZ_CP035382|2|970007-970088|CRISPRCasFinder
GTCAAAGGCAAGGTTTGTAGGTCGGGTAAGGCGAAGCCGCCACCCGACACATCCGCCAGGTCAAAGGCAGGGTTTGTAGGTC

>NZ_CP035382|2|2|970007-970088|CRISPRCasFinder
GTCAAAGGCAAGGTTTGTAGGTC	GGGTAAGGCGAAGCCGCCACCCGACACATCCGCCAG
GTCAAAGGCAGGGTTTGTAGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035382.1\|WP_142486975.1\|975529_976303_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182318
NZ_CP035382.1\|WP_142486973.1\|974079_975096_+\|HTH-type-transcriptional-regulator-GalR	unknown	unknown	gnl\|CDD\|182681
NZ_CP035382.1\|WP_142486970.1\|968539_969580_+\|NADP(H)-dependent-aldo-keto-reductase	unknown	unknown	gnl\|CDD\|236727
NZ_CP035382.1\|WP_142486969.1\|967370_968063_+\|DNA-mismatch-repair-endonuclease-MutH	unknown	unknown	gnl\|CDD\|179923
NZ_CP035382.1\|WP_142486967.1\|963896_966143_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|182937
NZ_CP035382.1\|WP_142486978.1\|979427_980465_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380494
NZ_CP035382.1\|WP_032613767.1\|968192_968411_+\|lipoprotein-YgdR	unknown	unknown	gnl\|CDD\|380215
NZ_CP035382.1\|WP_142486968.1\|966155_966686_-\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_CP035382.1\|WP_142486965.1\|962029_962824_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_CP035382.1\|WP_142486966.1\|962830_963703_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_CP035382.1\|WP_142486962.1\|960429_960834_-\|DUF2509-family-protein	unknown	unknown	gnl\|CDD\|183174
NZ_CP035382.1\|WP_142486977.1\|977798_979136_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP035382.1\|WP_142486971.1\|970112_971306_-\|lysophospholipid-transporter-LplT	unknown	unknown	gnl\|CDD\|236879
NZ_CP035382.1\|WP_142486963.1\|960830_961391_-\|prepilin-peptidase-dependent-protein	unknown	unknown	gnl\|CDD\|236714
NZ_CP035382.1\|WP_142486976.1\|976374_977802_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|225343
NZ_CP035382.1\|WP_142486979.1\|980434_981697_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|236867
NZ_CP035382.1\|WP_142486980.1\|981818_982757_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
NZ_CP035382.1\|WP_142486974.1\|975056_975533_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP035382.1\|WP_142486964.1\|961381_961846_-\|prepilin-peptidase-dependent-protein	unknown	unknown	gnl\|CDD\|236704
NZ_CP035382.1\|WP_142486972.1\|971298_973458_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	unknown	unknown	gnl\|CDD\|181207

Protein	Function_ID	Function_description	E-value
NZ_CP035382.1\|WP_142486975.1\|975529_976303_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|182318	PRK10225, PRK10225, Uxu operon transcriptional regulator.	4.87917e-77
NZ_CP035382.1\|WP_142486973.1\|974079_975096_+\|HTH-type-transcriptional-regulator-GalR	gnl\|CDD\|182681	PRK10727, PRK10727, HTH-type transcriptional regulator GalR.	0
NZ_CP035382.1\|WP_142486970.1\|968539_969580_+\|NADP(H)-dependent-aldo-keto-reductase	gnl\|CDD\|236727	PRK10625, tas, putative aldo-keto reductase; Provisional.	0
NZ_CP035382.1\|WP_142486969.1\|967370_968063_+\|DNA-mismatch-repair-endonuclease-MutH	gnl\|CDD\|179923	PRK05070, PRK05070, DNA mismatch repair protein; Provisional.	5.48971e-164
NZ_CP035382.1\|WP_142486967.1\|963896_966143_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|182937	PRK11061, PRK11061, phosphoenolpyruvate--protein phosphotransferase.	0
NZ_CP035382.1\|WP_142486978.1\|979427_980465_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	1.28814e-126
NZ_CP035382.1\|WP_032613767.1\|968192_968411_+\|lipoprotein-YgdR	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	1.35924e-35
NZ_CP035382.1\|WP_142486968.1\|966155_966686_-\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	2.5712e-105
NZ_CP035382.1\|WP_142486965.1\|962029_962824_-\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NZ_CP035382.1\|WP_142486966.1\|962830_963703_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	2.04843e-115
NZ_CP035382.1\|WP_142486962.1\|960429_960834_-\|DUF2509-family-protein	gnl\|CDD\|183174	PRK11521, PRK11521, DUF2509 family protein.	1.11082e-49
NZ_CP035382.1\|WP_142486977.1\|977798_979136_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	5.68605e-123
NZ_CP035382.1\|WP_142486971.1\|970112_971306_-\|lysophospholipid-transporter-LplT	gnl\|CDD\|236879	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.	0
NZ_CP035382.1\|WP_142486963.1\|960830_961391_-\|prepilin-peptidase-dependent-protein	gnl\|CDD\|236714	PRK10557, PRK10557, prepilin peptidase-dependent protein.	5.40749e-90
NZ_CP035382.1\|WP_142486976.1\|976374_977802_-\|family-1-glycosylhydrolase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	2.68407e-143
NZ_CP035382.1\|WP_142486979.1\|980434_981697_-\|diaminopimelate-decarboxylase	gnl\|CDD\|236867	PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional.	0
NZ_CP035382.1\|WP_142486980.1\|981818_982757_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	0
NZ_CP035382.1\|WP_142486974.1\|975056_975533_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	4.06019e-09
NZ_CP035382.1\|WP_142486964.1\|961381_961846_-\|prepilin-peptidase-dependent-protein	gnl\|CDD\|236704	PRK10506, PRK10506, prepilin peptidase-dependent protein.	7.45357e-63
NZ_CP035382.1\|WP_142486972.1\|971298_973458_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	gnl\|CDD\|181207	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase.	0

>NZ_CP035382.1|WP_142486970.1|968539_969580_+|NADP(H)-dependent-aldo-keto-reductase
MQYHRIPHSALEISQLGLGTMTFGEQNSEADAHAQLDYAVSQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKRGNREKLIVASKVSGPSRNNDSGIRPNQILDRKNIRAALDASLTRLQTDYLDLYQVHWPQRPTNCFGKLGYSWSDSAPVVTLLETLEALTECQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSYEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNVESIHLELSEEVLAEIEAVHQVYTYPAP
>NZ_CP035382.1|WP_032613767.1|968192_968411_+|lipoprotein-YgdR
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEVDDDTGLVSYRDQQGNNMQINRDDVSQIIER
>NZ_CP035382.1|WP_142486969.1|967370_968063_+|DNA-mismatch-repair-endonuclease-MutH
MLPLVPLTSPPATEAALLQQAQRLAGYSLGELAALAGLPIPPDLKRDKGWTGILLELWLGASAGSKPEQDFAALGVELKTIPIDSLGRPLETTFVCVAPLTGNTGITWESSHVRHKLKRVLWIPVEGDRAIPLAARRVGAPLIWSPDEEEDRQLRLDWEELMDMIVLGQVERITARHGEVLQLRPKAANSKALTEAIGAHGEPILTLPRGFYLKKNFTGALLARHFLLNT
>NZ_CP035382.1|WP_142486968.1|966155_966686_-|RNA-pyrophosphohydrolase
MIDDDGYRPNVGIVICNRQGQVMWARRYGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSSDADINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASAVMLLQETPPKPQSAPAWRRKRG
>NZ_CP035382.1|WP_142486967.1|963896_966143_-|phosphoenolpyruvate--protein-phosphotransferase
MLTRLREIVEKVASAPRLNEALDILVTDICLAMETEVCSVYLADHDRRCYYLMATRGLKKPRGRTVALAFDEGVVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLAALFGQYRQTRIRALPASPGVAIAEGWMDATLPLMEQVYEASTLDTALERERLTGALEEAANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDARLRRELFDEVDSGSVAEWAVKKIIEKFAEQFAALTDGYLKERAGDLRTLGQRLLFHLDDTIQGANTWPPRFVLVADELSATTLAELPQDRLAGIVVRDGAANSHAAIMVRALGIPTVMGADIQPSALHRRTLVVDGYRGELLVDPEPVLLQEYQKLISEENELSRLAEDDVNQPAALKSGERIKVMLNAGLSPEHEEKLGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLSILLPMVTSIDEIDEARRLIERAGREVEEMIGYEIPKPRIGVMLEVPSMVFMLPQLASRVDFISVGTNDLTQYMLAVDRNNTRVASIYDSLHPAMLRVLAMIAREAQEQGLDLRLCGEMAGDSMCVAILIGLGFRHLSMNGRSVARVKYLLRHIDFEEAQLLAKRSLEAQLATEVRHQVAAFMERRGMGGLIRGGR
>NZ_CP035382.1|WP_142486966.1|962830_963703_-|prolipoprotein-diacylglyceryl-transferase
MNSGYLHFPEFDPVIFSVGPVALHWYGLMYLVGFVFAMWLAGRRAKRPGSGWTKDEVENLLYAGFLGVFLGGRIGYVLFYNFPLFLADPLYLFRVWDGGMSFHGGLIGVILVMVIFAKRTKRSFFQVADFIAPLIPFGLGAGRLGNFINGELWGRVDPSVSFTMLFPQSRAEDIALLPSHPEWQSIFDTYGVLPRHMSQLYEMALEGVVLFIILNLFIRKPRPTGSVSGLFLIGYGAFRIIVEFFRQPDAQFTGTWVQYISMGQILSIPMIVAGIAMMVWAYRRPQQQVS
>NZ_CP035382.1|WP_142486965.1|962029_962824_-|thymidylate-synthase
MKQYLELMQKVLDEGTPKNDRTGTGTISIFGHQMRFNLQEGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLRENNVSIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVVNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMEQTHLQLTREPRALPKLVIKRKPDSIFDYRFEDFEIEGYDPHPGIKAPVAI
>NZ_CP035382.1|WP_142486964.1|961381_961846_-|prepilin-peptidase-dependent-protein
MKKEKGFTLMEILIALSLIVTLSAAGLYGWRRWQQQQQLWQTARQVRDYLVVLRNDAWRNNRDHIVTLQRAGKQWCLLKTGIPACQADNAFVLTPQWSDIQITELTPALGFYGLRDTAWAGRVRLQSQAGEWLILISAWGRIRMCNGKGEFACR
>NZ_CP035382.1|WP_142486963.1|960830_961391_-|prepilin-peptidase-dependent-protein
MPVKQQGFSLTEVLIAMAISSVLLMSTARFLPALQRSIMVLTKQQELQEELWLRINGIGKHLQRAGYCAGKCEGEALKIGLRGECVIVQWDENSNGRWETLPSAAEQTGFRLNGDALETLRGATQCEGKGWERMTDPDRIRVQRFQVQRILRAGFAPELSLTLAASVNGQRDGVVEARHVVTGFNL
>NZ_CP035382.1|WP_142486962.1|960429_960834_-|DUF2509-family-protein
MNRQQGMSSLALVLLLLILGSLMLAGLNQQLAALMRIVSTERQAIQHQAIAQSALEWGRMLSWQTQAEYACRQHPQQPWRVCLRILEERALLIASSGSAMLWRLGEVTANGVHFSPQGWSDFCPLKERALCQQP
>NZ_CP035382.1|WP_142486971.1|970112_971306_-|lysophospholipid-transporter-LplT
MSESVPTNTSIWSKGMMAVTAAQFFSAFGDNALLFATLALLKSQFYPDWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANSLKLLGAASICFGVNPFIGYTLVGIGAAAYSPAKYGILGELTTGDKLVKANGLMEASTIAAILLGSMAGGVLADWHVLAALGICAVMYAGAVIANLFIPKLPAARPGQSWRFTPMTASFFNACRVLWRNGETRFSLLGTSMFWGAGVTLRFLLVLWVPTALGITDNATPTYLNAMVAVGIVLGAGAAAKLVTLQTVARCMPAGILIGVVVLIFALQHALLPAYALLFLMGICGGFFVVPLNALLQERGKQTVGAGNAIAVQNLGENAAMLLMLGLYSLAVKVGVPVVGIGVGFGGLFALAIAALWIWQRRR
>NZ_CP035382.1|WP_142486972.1|971298_973458_-|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase
MLFGFFRTLFRILFRVRLTGDTRALHADRVLITPNHVSFIDGILLALFLPVRPVFAVYTSVSKQWYMRWLTKLIDFVPLDPTKPMMIKHLVRLIEQGRPVVIFPEGRISITGSLMKIYDGAGFVAAKSGATVVPVRIEGAELTFFSRLKGLVKQRLFPRITLHLLPPTSLPMPDAPRARDRRKIAGEMLHQVMMEARMAVRPRETLYESLLTAMYRYGAKKNCIDDINFAPDNYHKLLTKTLFVGRILEKYSKQGEKIGLMLPNAGISAAVIFGAVSRGRVPAMLNYTAGVKGLGSAITAAQINTVFTSRTFLDKGKLWHLPEQLTQVRWVFLEDLKAEVTAGDKLWIFAHLLMPHLAQVKQQPEDAAVILFTSGSEGSPKGVVHSHKSLLANVEQIKTIADFTTRDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELTYDRNCTVIFGTSTFLGNYARFANPYDFHRVRYVVAGAEKLQESTRQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLAVPGIEEGGRLQLKGPNVMNGYLRVENPGVLEVPTAENVNGEVEAGWYDTGDIVRFDEQGYVQIQGRAKRFAKIAGEMVSLEMVEQLALAVSADKMHATAVKADASKGEALVLFTTDSELKREQLLQHAREHGIPELAVPRDIRYLKQLPVLGSGKPDFVTLKGMVDQAESHNE
>NZ_CP035382.1|WP_142486973.1|974079_975096_+|HTH-type-transcriptional-regulator-GalR
MATIKDVARLAGVSVATVSRVINNSPKASETSRQAVLTAMESLNYHPNANARALAQQSTDTVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAKKLSDEELVHLMKQIPGMVIVNRIIPGYEQRCVSLDDRYGAWLATRHLIQQGHTRIGYLCSNHAISDAEDRLQGYYDALRENDLPCNDRLVTYGEPDERGGEQAMTELLGRGRNFTAIACYNDSMAAGAMGVLNDNGIDVPGDISLIGFDDILISRYVRPRLTTVRYPIVTMATQAAELALSLADKRQPPEITHVFSPTLVRRHSVTPPAESASE
>NZ_CP035382.1|WP_142486974.1|975056_975533_-|GNAT-family-N-acetyltransferase
MIIQPLYAAPQHAEQVIDWLWQAFGDGLPRDFFASVVTYSQTPGALPLTFIATQGEQLLGTVGLWRCDLITRQDLYPWLAALYVDEAARGQGLAGKLQQHVQKYAAGIGYRELHLWSACRDFYERYGWHYMGDGLEYPDKTVHLYRYSLADSAGGVTE
>NZ_CP035382.1|WP_142486975.1|975529_976303_-|GntR-family-transcriptional-regulator
MDKAVVPAEKKQYQEIGEDLRAQIIQGHYPVGSRLPPERNIAETYGVSRTIVREALLMLELQGTVDIRQGSGVYVMRIPEEHENEEERLLKSDVGPFEILQARQLLESNIAAFAAKMATRADIDNLRRIIEQEQRAIAANDNSQDNSKMFHLVLAGATQNQMLLATVESVWHHMDSSPLWQQFNVHIASRAYRLKWLGDRQTILAALRRRDVMGAWQAMFQHLENVKKSLLELSDEDAPDFDGYLFESVPIFQGKLV
>NZ_CP035382.1|WP_142486976.1|976374_977802_-|family-1-glycosylhydrolase
MTIKQMKIPGDFILGAAASAWQTEGWSGKKAGQDSWIDLWYKNDRQVWHNGYGPAVATDFINRFREDVALMKQAGLTHYRTSINWSRFLTDYENATVDEEYAAYYDALFAEMHRQGIEPMICLEHYELPGTLLETYGGWASKHVVELFVRYAEKVFARYHHLVKRWFSFNEPIVVQTRVYLDALRWPYEQNTSTWMQWNHHKVLATAKVVKLFREKGYSGSVGCILNPEVTYPRSRAAHDVKAAEIYDLFYNRVFLDPLVHGHYPQELFTLLEKHQVQWEYSPEELALIADNTVDELGINLYYPHRVKAPSRAWHPETPFHPAYYYEPFELPGRRMNPSRGWEIAPRIIYDMAMRIKNDYRNIDWFVAESGMGVENEAQYRNHDGIIEDNYRINFISEHLYYTLLAREEGANCHGYMLWAFTDNVSPMNAFKNRYGLIEIDLADNRARRAKKSASWFRQLRDERVLTLTLDDEWK
>NZ_CP035382.1|WP_142486977.1|977798_979136_-|PTS-transporter-subunit-EIIC
MALQEKLINSLGSFATKFNSYRYIMAIKSAFITLMPVIIVGAFSVLISNMVLDPKNGLASFQSLSFLATLKPITSALNYATLNFLNIGAVFLIGIELGRINGIKSLFPGLLAVICFICVTPTTVEMMVDGEMHMVKDVLLRQFSDTRSLFLGMFIAILSVEIYCWLEGRPGLKIRMPDTVPPNVSASFSALIPAIITTTLIATFGFVFHQVTGMYLYDAVYQVVQQPLERVVQSLPGILLLMFVAQLFWVIGIHGNQMIKPIREPLLLGAITVNMSAFEQGKEIPNIITMPFWDVYMSIGGSGLTIGLLIAVMIGTKRKEMKEIAKLSIGPGIFNINEPVIFGMPIMLNPILAIPFIITPLVTGSIGYFATVTGFAGKAVVMVPWTTPPLINAWLSTAGSMGAVVTQGVCIITAVLIYLPFVKIASRRAEQAAIQAANQEATNNA
>NZ_CP035382.1|WP_142486978.1|979427_980465_+|substrate-binding-domain-containing-protein
MATMLDVSLRAGVSKATVSRVLNGTGQVKESTRQQVFNAMEELGYRPNFLARSLANRTSNSIGLVVSTFDGFYFGRLLQQASRQTETHGKQLIVTDGHDTPEREEEAVQMLADRQCDAIVLYTRYMSEKAIMKLINSVKMPLVVINRDVSQARERCVFFEQQAAAFSAVEYLISQGHREIACMTVPIHTPTGKARLTGYRKALEKHGIPWDESRVKYGDSGMTRGYELCQELLNDKVPFSALFACNDDMALGASKALHQAGLHIPQDVSLFGFDDAPCARWLEPALSTVYLPIDNMITTAIDQAIRLAKSEPIEAIPPFTGTLVLRDSVATGPWFDQNSSRASSS
>NZ_CP035382.1|WP_142486979.1|980434_981697_-|diaminopimelate-decarboxylase
MPRPLNNTDTDLNADNLLRLPAEFGCPVWVYDAQIIRDKIAALHQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYDPKIDRDAIVFTADLIDSATLARVHELQIPVNAGSVDMLEQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYSDLPAALTVLQRYNLKLVGIHMHIGSGVDYGHLEQVCGAMVRQVIEFGQDLEAISAGGGLSIPYREGEEAIDTDHYYGLWNGARDKIAAHLGHAVKLEIEPGRFLVAESGVLVSQVRSVKAMGSRHFVLIDAGFNDLMRPSMYGSYHHITALAADGRDLTQAPVVETVVAGPLCESGDVFTQQEGGKVETRALPQVVPGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDKGEARLIRRRQTIQELLALELF
>NZ_CP035382.1|WP_142486980.1|981818_982757_+|LysR-family-transcriptional-regulator
MPAVNLRHIEIFHAVMTAGNLTEAARLLHTSQPTVSRELARFEKVIGLTLFERTRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAADSLREFRQGELSIVCLPVFSQSFLPALLQPFLARYPDVNLTIVPQESPLLEEWLSAQRHDLGLTETLATPAGTARHELLSLDEVCVLPAGHRLAEKAVLTPADFQGENYISLSRTDSYRQLLDTLFAEHLVKRRMVVETHSAASICAMVRAGVGISVVNPLTALDYADSGIAIRRFSIPVPFTVSLIRPLHRPASALVDTFSAHLQQGLDTIIDPLERLLTSHATKA

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Crispr_ID: NZ_CP035382_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035382_3

3480131-3480253

Orphan

Consensus_repeat	Method
TAGGCCGGGTAAGGCGAAGCCCGCCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035382_3

>merge|NZ_CP035382|3|3480131-3480253|CRISPRCasFinder
TAGGCCGGGTAAGGCGAAGCCCGCCACCCGGCAATGCTGTGCGGCCTGATGCCCGGTGACGCTACGCTTACCGGGCCTACGGTTATGTTTTAGGCCGGGTAAGGCGAAGCCGCCACCCGGCAT

>NZ_CP035382|3|3|3480131-3480253|CRISPRCasFinder
TAGGCCGGGTAAGGCGAAGCCCGCCACCCGGCA	ATGCTGTGCGGCCTGATGCCCGGTGACGCTACGCTTACCGGGCCTACGGTTATGTTT
TAGGCCGGGTAAGGCGAAGCCGCCACCCGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035382.1\|WP_142488947.1\|3486453_3487563_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225758
NZ_CP035382.1\|WP_142488937.1\|3473559_3474798_+\|hydantoinase/carbamoylase-family-amidase	unknown	unknown	gnl\|CDD\|237250
NZ_CP035382.1\|WP_059308351.1\|3483917_3484493_-\|NADPH-dependent-FMN-reductase	unknown	unknown	gnl\|CDD\|182557
NZ_CP035382.1\|WP_142488942.1\|3481019_3481811_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
NZ_CP035382.1\|WP_142488932.1\|3465608_3466799_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181731
NZ_CP035382.1\|WP_142488936.1\|3472249_3473536_+\|septum-formation-initiator	unknown	unknown	gnl\|CDD\|273283
NZ_CP035382.1\|WP_142490082.1\|3466983_3468063_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182543
NZ_CP035382.1\|WP_142488944.1\|3482962_3483925_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236929
NZ_CP035382.1\|WP_142488935.1\|3470917_3472132_+\|diaminopropionate-ammonia-lyase	unknown	unknown	gnl\|CDD\|274631
NZ_CP035382.1\|WP_142488948.1\|3487662_3489771_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NZ_CP035382.1\|WP_142488945.1\|3484741_3485752_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP035382.1\|WP_142488934.1\|3470248_3470710_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP035382.1\|WP_142488939.1\|3476028_3477231_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
NZ_CP035382.1\|WP_142488943.1\|3481820_3482966_-\|FMNH2-dependent-alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
NZ_CP035382.1\|WP_142488940.1\|3477495_3480108_+\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP035382.1\|WP_142488949.1\|3489783_3491691_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236861
NZ_CP035382.1\|WP_142488946.1\|3485920_3486457_+\|cell-division-protein-ZapC	unknown	unknown	gnl\|CDD\|369220
NZ_CP035382.1\|WP_142488938.1\|3474816_3475980_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NZ_CP035382.1\|WP_142488933.1\|3468672_3470073_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP035382.1\|WP_142488941.1\|3480255_3481023_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055

Protein	Function_ID	Function_description	E-value
NZ_CP035382.1\|WP_142488947.1\|3486453_3487563_-\|MOSC-domain-containing-protein	gnl\|CDD\|225758	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only].	1.43072e-133
NZ_CP035382.1\|WP_142488937.1\|3473559_3474798_+\|hydantoinase/carbamoylase-family-amidase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
NZ_CP035382.1\|WP_059308351.1\|3483917_3484493_-\|NADPH-dependent-FMN-reductase	gnl\|CDD\|182557	PRK10569, PRK10569, NAD(P)H-dependent FMN reductase; Provisional.	2.33861e-128
NZ_CP035382.1\|WP_142488942.1\|3481019_3481811_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	8.03388e-167
NZ_CP035382.1\|WP_142488932.1\|3465608_3466799_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP035382.1\|WP_142488936.1\|3472249_3473536_+\|septum-formation-initiator	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	4.78946e-150
NZ_CP035382.1\|WP_142490082.1\|3466983_3468063_-\|hypothetical-protein	gnl\|CDD\|182543	PRK10554, PRK10554, outer membrane porin protein C; Provisional.	1.23824e-135
NZ_CP035382.1\|WP_142488944.1\|3482962_3483925_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236929	PRK11553, PRK11553, alkanesulfonate transporter substrate-binding subunit; Provisional.	0
NZ_CP035382.1\|WP_142488935.1\|3470917_3472132_+\|diaminopropionate-ammonia-lyase	gnl\|CDD\|274631	TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.	0
NZ_CP035382.1\|WP_142488948.1\|3487662_3489771_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NZ_CP035382.1\|WP_142488945.1\|3484741_3485752_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP035382.1\|WP_142488934.1\|3470248_3470710_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	5.77107e-36
NZ_CP035382.1\|WP_142488939.1\|3476028_3477231_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_CP035382.1\|WP_142488943.1\|3481820_3482966_-\|FMNH2-dependent-alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
NZ_CP035382.1\|WP_142488940.1\|3477495_3480108_+\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP035382.1\|WP_142488949.1\|3489783_3491691_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	0
NZ_CP035382.1\|WP_142488946.1\|3485920_3486457_+\|cell-division-protein-ZapC	gnl\|CDD\|369220	pfam07126, ZapC, Cell-division protein ZapC. ZapC is one of four FtsZ-binding components of the Z ring in bacteria. Formation of the Z ring on the cytoplasmic surface of the membrane is the starting process for assembly of the cell-division apparatus. It binds directly to the Z ring, and although it is not essential for absolute cell division it contributes to it by enhancing the interactions between the FtsZ protofilaments (or polymers) which aggregate to form the ring conformation in the Z ring.	3.24264e-91
NZ_CP035382.1\|WP_142488938.1\|3474816_3475980_+\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP035382.1\|WP_142488933.1\|3468672_3470073_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP035382.1\|WP_142488941.1\|3480255_3481023_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	7.18278e-177

>NZ_CP035382.1|WP_142488940.1|3477495_3480108_+|aminopeptidase-N
MTQQPQAKYRHDYRAPDYLISDIDLTFDLDATKTVVTAVSQVTRHNATAVPLRLDGEDLTLVSVHVNDTAWTDYKEENNQLVLDNLPERFTLRIVNEISPASNTALEGLYQSGVALCTQCEAEGFRHITWYLDRPDVLARFTTKIIADKATYPFLLSNGNRVGEGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELFVDRGNLDRAPWAMTSLINSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNVFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDKVIEMNNFYTLTVYEKGSEIIRMIHTLLGEVNFQKGMQLYFERHDGSAATCDDFVQAMEDASNIDLSHFRRWYSQAGTPIVTVKDDYNPETEQYTLTISQRTPPTAEQEEKHPLHIPFAIELYDNEGKVIPLQKGGHPVHNVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVNRHQQGQPLSLPVHVADAFRAILLDEKIDPALAAEILTLPSATEIAELFEIIDPIAIVAVREALTRTLATELADEFLAIYNHHKLDAYRVEHADIGKRALRNTCLRYLAFGETALANELVSQQYHTADNMTDALAALAASVAAELPCRDALMQEYDDKWHQDGLVMDKWFILQSTSPAADVVNKVRSLLEHRSFTLSNPNRVRSLIGAFASSNPAAFHAEDGSGYQFMVEMLTELNSRNPQVASRLIEPLIRLKRYDAERQAKMRAALEQLKGLENLSGDLYEKISKALA
>NZ_CP035382.1|WP_142488939.1|3476028_3477231_-|nicotinate-phosphoribosyltransferase
MTRFASPVLHTLLDTDAYKLHMQQAVFHHYHDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQDDEFQWLSGLPFFKEDYLQWLRNFRYDPTQVQISNDNGKLHIRLEGPWREVIMWEVPLLAVISELVHRFRSPDAGVEQALANLEHKLVDFAGLTESLDMSRFRLMDFGTRRRFSREVQQAIVERLQQEPWFVGTSNYDLARRLNLTPMGTQAHEWFQAHQQISPELATSQRAALAAWLEEYPNQLGIALTDCITMDAFLRDFGPEFATAYQGLRHDSGDPQEWGEKAIAHYQKLGIDPMSKVLVFSDNLDLPKAVGLYRHFSSRINLGFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQIKIAS
>NZ_CP035382.1|WP_142488938.1|3474816_3475980_+|amidohydrolase
MNQEQLKQQLTAWRHHLHANPESAFEEVKTAQFIAEKLQSMGIEVHRDIGKTGLVGVLKCGEGQGVIAIRADIDAIQLTEKGEMSYRSDTPERMHGCGHDGHTCIALGAAQLLLQRQNFNGTVCFVFQPAEEPGYGAKAMMADGVIERFGIEEIYGLHNMPGMKAGTIATRVGGIMASEDNFIIRITGQGAHAARPHMAKDPLVIAAEIILALQTIVSRNVDPNVPAVISCTELHTDGIRNAIPTHVEIKGDTRSDSPEVQALLEERMRTISEAICAMHGAQCEFIYTHEFAPTVNWQQCVDVAVNAAVNVVGAERVEGNVAPMMISEDFGAFLQQVPGCFVFLGNGDASDPQGNTPLHNACYDFNDEILLTGAEYFAEIVRTRLPL
>NZ_CP035382.1|WP_142488937.1|3473559_3474798_+|hydantoinase/carbamoylase-family-amidase
MHHYLQINGQRLIDSLFALGECGALEGGGVCRLAATAEDKAGRDFVVARMKALGLDISVDAIGNVTGVYAGEEALPIVMMGSHIDTVGTGGLYDGNYGVMAGLEVIATLQEAGLRARRPLAVTFFTNEEGVRFQPDMMGSVVFAGEYPLEAALAAKDREGITLDEALRAIGYRGERRPGDMSVDSYVELHIEQGPILDKEGTDIGVVTGVQGISWQELTLTGVSNHAGTTPMSMRHDAGLAAAKIAVFVRELALNLGGDQVATVGHISVKPNLINVIPNQVVMSVDLRNTDNAVLKLAEQQLADFIATTAHDEGVKITSRSLVRFNPVIFADDIVNAVEDEAKRQGLSARRLPSGAGHDAQFMASVCPAGMIFVPCVDGISHNVNEHSDPKDLIAGANVLLQVVLQRAQRPA
>NZ_CP035382.1|WP_142488936.1|3472249_3473536_+|septum-formation-initiator
MNSENAVTERGCNPAKWHSEDTVWVLGLFGTAIGAGVLFLPINAGIGGFWPLLIVFVLAFPITYLAHRGLARFIYSSTTPESTITDAIGEHFGALAGKVFTVIYFFAVYTILIMYAVAITNTAQSFITHQLGMAEPPRALVAIGLILGLMFIVRLGQRLIMRVMSALVYPFILSLIFMALFLIPHWNGAILHTLNLSTVGDGHGMLLTLWMTFPVLVMSFNHYPIISPMVVRQKQRYGLALAEHKCGQIQRYGILLMTLVVLFFVLSCVLSLSPQQLAEAKRQNLSILSYLANQFDTPVIAWLSPIIAFVAITKSFLGHYIGAYESLRDLIVETAGARGKKPAIRSVDAAILIFMVLTCWFAAYKNPSILGIIEYISGPTGAVILLLLPMYAIHKLPALAPYRGKASNVFVTLIGLITVSAIFYGMFQ
>NZ_CP035382.1|WP_142488935.1|3470917_3472132_+|diaminopropionate-ammonia-lyase
MTDRINFHFNARRKAYGKGVSLSLLNEQVGGEVLAFHQKFPAYQVTPLRRLDHLSQRLGLGSLHVKDEAQRFGLNAFKGLGGSYAMGKYLADLLGRDINTLSFADLNSAEIKARIKDIVFVTATDGNHGRGVAWAAEQLGLRAVVYMPKGSSPVRAQNIRQHGAECTITDLNYDDTVRLADKAAREQGWVLLQDTAWQGYEQIPTWIMQGYMTLAVEAWEQLRQSGTPLPTHLFLQAGVGSFAGSIMGYFVEKMQHQAPTIVIVEPHQANCLYRSVVINDGQPHSVGGDMATLMAGLACGEPNITSWPMLRDHATCFISADDRLAANGMRLLAAPRPGTDEPFISGESGAIGAGVLHALMTQPEHRELAESLRLNADVHVLLISTEGDTSPDIYEEIVWFGRNG
>NZ_CP035382.1|WP_142488934.1|3470248_3470710_-|winged-helix-turn-helix-transcriptional-regulator
MKLDTWDKKILTLLQQTNRLSQREIADRVSLSASAVNRRIAALEEAGIIKGSVSVVDASKVGRPITIMAQVTIENERLDLLEEDKQRFVNCPQVQQVYYVTGDFDFLLVINVRDMAEYEGLTRELFFASGNIKSFRTIVSMQNAKQEMTVVIE
>NZ_CP035382.1|WP_142488933.1|3468672_3470073_-|asparagine--tRNA-ligase
MSVVPVADVLQGRVTVDSEVTVRGWVRTRRDSKAGFSFLAVYDGSCFDPVQAVINNSLPNYNQEVLRLTTGCSVVVTGKIVASQGQGQSYELQATSIEVTGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNMIGAVARVRHTLAQALHRFFDEQGYFWVSTPLITASDTEGAGEMFRVSTLDMENLPRTPEGKVDYDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLDDVAGLAEAMLKYVFNAVLTERADDMKFFAERVDSDAISRLERFVSADFAQVDYTDAVTILENCGQKFENPVYWGVDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMRLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRSATF
>NZ_CP035382.1|WP_142490082.1|3466983_3468063_-|hypothetical-protein
MKRNILAVVIPALLVAGAANAAEIYNKNANKLDLYGKVVGKHIWDKSGGDNNSADDSYARIGFKGETQVNDQLAGYGQWEYNLNASKAEGSQDTRTRLAFAGLKAGDYGSFDYGRNYGVFYDALASTDMLVEYGGDTLCQTDNFMTCRTTGVATYRNSNFFGLVDGLSLGLQYQGKNVNGHGVERQNGDGNSYSLGYDFLDGFNVTAAYTNSDRTNGQEADGQGSRAEGWATSAKYDANNLYAAVMYGESNNMTRENDDTFANKTQNFEAVVQYQFDFGLRPSVGYVQSKGKDLAARGTFNGGDADLVKYVEVGSWYYFNKNMNVYGAYRFNLLDDNSYTSSVKLATDDTYVLGLVYQF
>NZ_CP035382.1|WP_142488932.1|3465608_3466799_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENENTKNYLGIDGIPEFGRCTQELLFGKGNAIISDKRARTAQTPGGTGALRVAGDFLAKNTSVKTVWVSNPSWPNHKSVFNSAGLEVREYAYYDAANHALDFDGLLASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWEQLAKLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAALHKELIVASSYSKNFGLYNERVGACTLVAADEQTVDRAFSQMKSVIRANYSNPPAHGASVVATILSNDALRAIWEQELNDMRQRIQRMRLLFVNTLAEKGADRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL
>NZ_CP035382.1|WP_142488941.1|3480255_3481023_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MNTARLNQGTPLLLNGVTKRYGENTILNGLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLEAPNDGELLAGNTPLAQIQEDTRMMFQDARLLPWKTVIDNVGLGLKGNWKAQALQALAAVGLDNRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEDGKIGLDLTVDLPRPRRVGSVRLAELEAEVLDRVMKRGANEVSVRKHG
>NZ_CP035382.1|WP_142488942.1|3481019_3481811_-|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MANPSRKWLLRIAPWLLPVGIVLIWQLASSVGWLSSRILPSPEGVVEAFWSLSASGELWQHLAISSWRAVIGFSIGGSIGLTLGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDETAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGFALFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADVSAQWLERRWLRWNPAYVIKEAHA
>NZ_CP035382.1|WP_142488943.1|3481820_3482966_-|FMNH2-dependent-alkanesulfonate-monooxygenase
MSLNLFWFLPTHGDGHYLGTDEGARPVDHAYLQQIAQAADRIGFTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHTERYEASAEFTHVWRRLLEGENVTFEGKHIHVRDAKLFFPPIQQPRPPLYFGGSSDVAQDLAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKVRFGIRLHVIVRETTEEAWQAADRLIAHLDDATIEKAQAAFARTDSVGQHRMASLHNGKRENLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYADLGIDSFILSGYPHLEEAYKVGELLFPHLDVAIPQIPQPQPLSQQGEAVANEFIPRKVAQS
>NZ_CP035382.1|WP_142488944.1|3482962_3483925_-|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein
MFKSLARLSLAGLVALSGLAHAADPAPESLRIGYQKGSVSMVLAKSHQLLEKRYPDTKFSWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVPEDSPIKTVADLKGHKVAFQKGSSSHNLLLRALQQAGLTFKDIQPVYLSPADARAAFQQNNVDAWAIWDPYYSAALLQGGVKVLKDGETLKQTGSFYLAARPYAEKNGEFVQGVLNTFSEADALTQSQRQASIALLAKTMGLPEPVIATYLDHRPPTVIKPVDASTAVLQQQTADLFYDNRLVPKKIDIRDRIWQPTAQKGAKS
>NZ_CP035382.1|WP_059308351.1|3483917_3484493_-|NADPH-dependent-FMN-reductase
MRVITLAGSPRFPSRSSALLEYAREQLTSLDVEVFHWNLHNFAPEDLLYARFDSPALKTLNEQLKDADGLIVATPVYKASFSGALKTLLDLLPERALEGKIVLPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYQHKPHFTPNLQTRLDSALETFWQALHRRDVQVPAFGLQKGVAHV
>NZ_CP035382.1|WP_142488945.1|3484741_3485752_+|quinone-dependent-dihydroorotate-dehydrogenase
MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPLEALVRQRVMEKPVTCMGLTFKNPLGLAAGLDKNGECIDAMGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVEAEGLINRMGFNNLGVDHLVENVKKAHFDGVLGINIGKNKDTPVEQGKDDYLICMEKVYAYAGYIAVNISSPNTPGLRTLQYGEALDDLLLAIKNKQNELQATHHKYVPVAVKIAPDLTEEELVQVADSLVRHNIDGVIATNTTLDRSLVQGMKYCDEMGGLSGRPVQLKSTEIIRRLSQELKGRLPIIGVGGIDSVMAAREKMAAGASLVQIYSGFIFKGPPLIKEIVNHI
>NZ_CP035382.1|WP_142488946.1|3485920_3486457_+|cell-division-protein-ZapC
MRIKPDDNWRWYFCDEHDRMMLDLANGMLFRSRFARRMLTPDAFADTGFCVDDAALYFSFEEKCRDLDLSKEQRAELVLNALVAIRFLKPQMPKSWHFLAHGERWSPVTGDAACVSLSENAELVNLLVVEPGDNAALCLLAQPAVTIAGRTMQLGDPIKVMNDRLKPQPVSFSLEQAV
>NZ_CP035382.1|WP_142488947.1|3486453_3487563_-|MOSC-domain-containing-protein
MATLSRLFIHPVKSMRGIGLTHAFADVSGFAYDRIFMVTEPDGTFITARQFPQMVRFTPAPVQDGLHLTAPDGSSSIVRFSDFAPADAPTEVWGNHFTARIAPEAINRWLSEFFSRPVQLRWVGPELTRRVKNFAGVPLSFADGFPFLLTNDASLRDLQKRCPASVQMEQFRPNMVVTGATAWEEDTWKVIRIGDVIFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIPRSSGVIRVGDEVEILSTGPGRIYGAGAEEETPEVEIQPATAVTIQWQGQTIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRITLVEGEVSALKKSAIGGDGTILCCSCVPKISVQLEA
>NZ_CP035382.1|WP_142488948.1|3487662_3489771_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MNSLFASTARGLEELLKTELESLGAQECQVVQGGVHFQGDTRLIYQSLMWSRLASRIMLPMRECKVYSDLDLYLGVQTIDWTEIFAPGATFAVHFSGLNDEIRNSQYGALKVKDAIVDSFTRKNLERPNVDRENPDLRINVRLNKEIASIALDLCGEGLHQRGYRDRAGIAPIKENLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGQWGFKGWAQHDEATWQEVKAEAQTRARAGLAAYESRFYGSDSDARVIERARSNARRAGIGELVSFEVKDVSQLTNPLPKGPYGTVISNPPYGERLDSEPALIALHSLLGRTMKDLFGGWNLSLFSASPELLSCLQLRAERQFKAKNGPLDCVQKNYHLAEKEADSKPASIAEDYANRLRKNLKKFEKWAKQEGIECYRLYDADLPEYNVAVDRYGEWVVVQEYAPPKTVDPQKARQRMLDIIAATINVLNIAPNKLILKTRERQKGKNQYEKMNSKGEFIEVGEYNARLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSASVHAGLGGARTTTTVDMSRTYLEWAERNLRLNGLTGRAHRLLQADVLGWLRESEEQFDLIFIDPPTFSNSKRMEESFDVQRDHLALMKDLKRMLRKGGTIMFSNNKRGFRMDHEGLEELGLKAQEISQKTLSQDFARNRQIHNCWLITAA
>NZ_CP035382.1|WP_142488949.1|3489783_3491691_+|ABC-transporter-ATP-binding-protein
MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIVYEQDLVVARLQQDPPRNVQGSVYDFVAEGIAEQAEYLKGYHEISHLVMTDPSTKNLNEMARLQELLDHHGLWQLENRINEVLAQLGLEADMPLASLSGGWLRKAALGRALVSGPKVLLLDEPTNHLDIETIDWLEGFLKTFGGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGDYDTYLLEKEENLRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERSERREVMGSARMQVEEASRSGKIVFEMENVNYQVDGKVLVRDFSAQVQRGDKIALIGPNGCGKTTLLKLMLDQLKADSGRIHCGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVMLVSHDRQFVDNTVTECWIFEGQGRIGRYVGGYHDARGQQAQSLATKQSKVKSEAEVAVTKAETAKRSSNKLSYNLQRELEGLPQRLEELEASLEGLQAQVADASFFSQPHDHTQKVLADMAQAEQALEEAFERWEYLEALKNGA

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Crispr_ID: NZ_CP035382_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035382_4

3810265-3810395

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035382_4

>merge|NZ_CP035382|4|3810265-3810395|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCACTGTAGAGAATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP035382|4|4|3810265-3810395|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCACTGTAGAGAATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035382.1\|WP_142489217.1\|3807838_3808471_+\|dimethylsulfoxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|131996
NZ_CP035382.1\|WP_142489211.1\|3800397_3801021_+\|response-regulator	unknown	unknown	gnl\|CDD\|226932
NZ_CP035382.1\|WP_142489224.1\|3815570_3816503_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP035382.1\|WP_142489219.1\|3809296_3810172_+\|ferredoxin	unknown	unknown	gnl\|CDD\|349764
NZ_CP035382.1\|WP_142489220.1\|3810553_3811927_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP035382.1\|WP_142489214.1\|3802830_3803466_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP035382.1\|WP_142489212.1\|3801098_3801581_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP035382.1\|WP_142489216.1\|3805455_3807855_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP035382.1\|WP_142489218.1\|3808463_3809297_+\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|225839
NZ_CP035382.1\|WP_142489225.1\|3816499_3817525_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP035382.1\|WP_142489228.1\|3819980_3820784_-\|endopeptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP035382.1\|WP_142489226.1\|3818074_3819241_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP035382.1\|WP_142489223.1\|3814258_3815455_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP035382.1\|WP_106993692.1\|3817820_3817910_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP035382.1\|WP_142489222.1\|3812829_3813978_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP035382.1\|WP_142489213.1\|3801968_3802787_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293813
NZ_CP035382.1\|WP_142489215.1\|3803547_3805158_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP035382.1\|WP_142489227.1\|3819276_3819858_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP035382.1\|WP_032617828.1\|3801700_3801841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035382.1\|WP_142489221.1\|3812150_3812795_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP035382.1\|WP_142489217.1\|3807838_3808471_+\|dimethylsulfoxide-reductase-subunit-B	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	2.26262e-95
NZ_CP035382.1\|WP_142489211.1\|3800397_3801021_+\|response-regulator	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	6.032e-56
NZ_CP035382.1\|WP_142489224.1\|3815570_3816503_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP035382.1\|WP_142489219.1\|3809296_3810172_+\|ferredoxin	gnl\|CDD\|349764	cd03110, SIMIBI_bact_arch, bacterial and archaeal subfamily of SIMIBI. Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.	3.9542e-09
NZ_CP035382.1\|WP_142489220.1\|3810553_3811927_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP035382.1\|WP_142489214.1\|3802830_3803466_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.49905e-92
NZ_CP035382.1\|WP_142489212.1\|3801098_3801581_+\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	5.66187e-28
NZ_CP035382.1\|WP_142489216.1\|3805455_3807855_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
NZ_CP035382.1\|WP_142489218.1\|3808463_3809297_+\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|225839	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only].	9.94731e-47
NZ_CP035382.1\|WP_142489225.1\|3816499_3817525_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP035382.1\|WP_142489228.1\|3819980_3820784_-\|endopeptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	2.04229e-43
NZ_CP035382.1\|WP_142489226.1\|3818074_3819241_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.4137e-99
NZ_CP035382.1\|WP_142489223.1\|3814258_3815455_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP035382.1\|WP_142489222.1\|3812829_3813978_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP035382.1\|WP_142489213.1\|3801968_3802787_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	4.19959e-55
NZ_CP035382.1\|WP_142489215.1\|3803547_3805158_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP035382.1\|WP_142489227.1\|3819276_3819858_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	5.80728e-134
NZ_CP035382.1\|WP_142489221.1\|3812150_3812795_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	3.14817e-123

>NZ_CP035382.1|WP_142489219.1|3809296_3810172_+|ferredoxin
MARFRLTQIPAPPGVGESCLRKQLPRHDCQACMVACPVQAITAPATTPVINEAECLQCGRCLFVCPADALQNIRPETRHFTASTLVAPFSTLEPSVEELLMWHQQHGIRAVEMEMDAFPGWVRAVAALNIRLRELNAPVWQIVAPQRKAINTGRRHFIKVREVDVQSSTVSVGVRARRQTFSALSEYQLSLDRAQCTVCGACARVCMEKALSRGEGALTFSSSSCTGCNSCAVVCPVDAIRIHRQVGENRVLHFPWIQKTCRCCQRAFYTFDPETERCAVCQRHKYGMREA
>NZ_CP035382.1|WP_142489218.1|3808463_3809297_+|dimethyl-sulfoxide-reductase-anchor-subunit
MHELPLLIFTLLVQGSVGMTLFLTLSARAGSRVPEVKPQLLPGMLIACIASGLGLMVSTLHLGYPLNAFNALRHVASSWLSREIVFASLYLAALGLCTLVMLVRKQLNPLLLPLAAVLGLIDVWCMSAIYAHTSVITWSHFNTWLMFYGAVGVLGAVALAWLPMLKARSVARERQSVMRFAAAMVVAIVAIRLLAQPDYMAHLASASLSGVITLPHQPMEIFTRLSGLRLLSWTLSAVGALLFAVSAWRQGKFGLMVGSLLLVLSEVLFRFMFFCIN
>NZ_CP035382.1|WP_142489217.1|3807838_3808471_+|dimethylsulfoxide-reductase-subunit-B
MSQQYKEYPPVSDKQLGFFIDSSRCSGCKACQVACKDKHNLEVGRRFRRVYEVKGGGFIPTGQGGYANNVYAFTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTNKCVGCGYCAWSCPYGAPQMNEEAGQMSKCDFCVDLQAKGEQPICVATCPLGAIQFGPIEELRAKYGNLCDVQGLPASSITQPNLVIKPHQGAEKEEQPHA
>NZ_CP035382.1|WP_142489216.1|3805455_3807855_+|molybdopterin-dependent-oxidoreductase
MSERKEKREALFPEITRRGLLKAGSALVTLPFVMSGKAMAAKTAAGTAQASAESAERVVQTCSTFDCGGKCDIRAHVADGVVTQITTRPDSALDPQMPVMRACVRGRSYRKFVYHPDRLKYPMKRVGKRGEGKFERISWEEATTLIADNLQRITAKYGPACRFVHNNTATSGGTFSGDKMMRRLLNLTGGYLEYYHSVSMGNTAAATPYTYGTAASGNSLDTLADTKLVILWGHNPNETIFGHTNHYFQQMKQNGTRFIVVDPRYSDTVASLADEWIPLLPATDNALMDAMMYVIVSENLHDKAFIERYTQGFDEASMPEGVPANESLVAYLMGDKDGQVKTPEWAEKITRVPAQTIRQLARDYANTKPAALIQGWGPQRHNCGERTARGSTLLATLTGNVGIKGGWAAGYGGCGNRKFAAGPEMPDNPVKESISIMNWVQAADDASKVTAEAGLKGADKLNSNIRILFSLAGNYLANQNPDLHQAVKVLEDESKIEFIVASDLYMTPSARYADLLLPETSFMERWNIGETWGTASYLILSEKLIEPEFERRSDYDWQREVAAKLAIEPQFSEGRTEQEWIEHIWEQTRLSMPDEQLPTFAELREKRQHLFKSKPYVAFEDNIRDPQNHPFPTPSGKIEIFSKRLYDMNNPEIPALSHYVPAHEGPEDALAKQFPLQLITWKGKNRANSTQYANPWLQEVQVQKLWINPMDAQQRGIRQGDSVRIHNQRGVCQVPAEVTQRIIPGVVAMQAGAWWQPDAEGVDHGGCANVLSSARITPLAKGNSHQTMLVEVAKYEPAV
>NZ_CP035382.1|WP_142489215.1|3803547_3805158_-|FAD-NAD(P)-binding-protein
MKRIAIIGAGPTGIYTFFSLLNHRTPLCITVFEQAEKAGVGMPYSDEENSKMMLANIASIEIPPLVSTYIDWLRSLDDAHLARYGVEQSTLHVRQFLPRILLGEYFRDQFVQLVDRAKKAGFDIEVRESCQVTDVEATPDGVNILTEEESAPKLFDLVVIATGHVWPDEDNASRSFFPSPWSGLMEAKIRACNVGIMGTSLSGLDAAMAVAVQHGKFIEADNEQIQFRLDEGSEALKIVLMSRSGILPEADFYCPIPYEPLTLATEPAIDAAIEQGSEGLLDRIFDLIVAELQHADPQWSDAVALETLTADSIRDAWFADRERHGPFRWAVSNLDEVERNKRDKRTVPWRYTILRLHEAVEKIVPHLTKQDKERFKVGLARIFIDNYAAIPSQSIRRLLALREAGVISILTLGDDYEMALKEDRTVIHARDEAWYFDVFIDARGQQPLKTKDLPFPVLRHQLESAGEDIPDVGDDYTLLAPDYLRGKIAFGALPYLMHDRPFVQGLVVCAEIGEAMAKAAVQPASRVRRRLPFTTE
>NZ_CP035382.1|WP_142489214.1|3802830_3803466_+|carbonic-anhydrase
MQHIIEGFLSFQKEVFPQRKDLFRSLASSQNPKALFISCSDSRLVPELVTQQDPGQLFVIRNAGNIVPPFGPEPGGVSATIEYAVVALGITDIVICGHSNCGAMKAIADNANLEPMPAVSHWLRYSDAAKAVVENKTWDNPTDKVNAMVQENVFAQLSNIKTHPSVAVGLRNNAIRLHGWVYDIESGAILALDKDSKTFVSLSDNPGVYFE
>NZ_CP035382.1|WP_142489213.1|3801968_3802787_+|MBL-fold-metallo-hydrolase
MIVLCKTCGTSYDVTSEPQQCAICEDERQYVPATGQEWINFSTLTATHTNKWQQLEASLLSIKTVPAFAISQRAILLRTPQGNVLWDCIANLDPATHALVTALGGIDAIAISHPHYYSTMQDWAAAFNAPVYLHASDRQWVMRSSPALRFWEGDSLELAPDVTLLRLGGHFAGGTVLHWNLDGGVLLAGDILQVTPGKDAVSFMWSYPNMLPLLASEVSEIAARLDDVRFERLYGAFEGQNISASAREIVMRSVQKYIACLNSGPVGKLEKP
>NZ_CP035382.1|WP_032617828.1|3801700_3801841_-|hypothetical-protein
MEIDLNNLVFDGLDEAEERNAERLEDADKKAQAIVADDDCGDACKI
>NZ_CP035382.1|WP_142489212.1|3801098_3801581_+|heme-binding-protein
MKKLMMAAVCVAGMVSVSAHAQSVAQKNLSLTQANALASAAIQACTAKNYQVSVTVVDRAGVVKAVQRTDNAGPHTLKASEMKAFTALSTKNASGKVMESAQSNAGAQNLRDIPGLLLLAGGLPVKEGDEVIGAIGIGGAPGGHLDEACAQQAIDGMKTL
>NZ_CP035382.1|WP_142489211.1|3800397_3801021_+|response-regulator
MDNVIWLIDDDASVRESLVFLLSGMHWRVEPYESIAAFTAAHGEEKALTGCLLLDMRMPGKGGLAWLEEGAWPWPLLPVILMTGHGTIDACRRAFHNGVFEFFTKPLDADKLIESITAALAESQQRIVRWQEARRVRALFEQLTAREHEVLLALMEGSSNKEVAARLNLSPRTVEAHRAAVFVKLGVSSLVQAIREYDKLQSVELPG
>NZ_CP035382.1|WP_142489220.1|3810553_3811927_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYLIEARQLLALAIPVILAQIAQTSMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPTIAQLNGSGRRERIAHQIRQGFWLAGFVSVLIMIVLWNAGYIIHAMRNIDPALADKAVGYLRALLWGTPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYVFIYGHFGMPELGGVGCGVATAAVYWVMFFGMLSYVKRARSMRDIRYEAGFSKPDMAVVKRLVQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPLSLAASVTIRVGYRLGQGSTLDAQTAARTGIGVGVCMAVCTALFTVTLREQIALLYNDNPEVVILASQLMLLAAIYQISDSIQVIGSGVLRGYKDTRSIFFITFIAYWVLGLPSGYILALTDLVVDRMGPAGFWMGFIIGLTSAAIMMMLRMRFLQRQPSSVILQRAAR
>NZ_CP035382.1|WP_142489221.1|3812150_3812795_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVALPDEMLDGLETGASVAHNGCCLTVTEINGNLISFDLMKETLRITNLGDLAEGDIVNVERAAKFSDEIGGHLMSGHIMTTAEISKILTSENNRQIWFKVQDPSLMKYILYKGFIGVDGISLTVGEVTPTRFCVHLIPETLQRTTLGNKKLGHRVNIEIDPQTQAVVDTVERVLAAKEAAAIQQTLNDA
>NZ_CP035382.1|WP_142489222.1|3812829_3813978_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSIRNDDWFRIVNELLSRAGITINGPASSDLQIKHPDFFKRVLKQGSLGLGESYMDGWWECERLDIFFNNVLRAGLETQLPSHLKDTLRIATARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPTMQYSCGYWKEATTLEQAQQDKLRLICEKLQLKPGMRVLDIGCGWGGLAHFMAHHYGVSVVGVTISAEQQKMAQARCEGLDVTILLQDYRDLRDQFDRIVSVGMFEHVGPKNYRTYFEVVDRNLKPDGLFLLHTIGSQKTDHRVDPWIDKYIFPNGCLPSVRQIANASEPHFVMEDWHNFGADYDTTLMAWHERFLAAWPEIADNYSERFKRMFSYYLNACAGAFRARDIHLWQVVFSRGVEHGLRVAR
>NZ_CP035382.1|WP_142489223.1|3814258_3815455_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MTPGKGFLVWLGGLSVLGFLATDMYLPAFSIMQEDLQTPAAAISASLSLFLAGFAFAQLLWGPMSDRFGRKPVLLAGLAIFALGCLGMLWVRDATWLLVLRFIQAVGVCAAAVTWQALVTDYYPASRTNRIFATIMPLVGLSPALAPLLGSWILAHFSWQAIFAVLFVITLVLMIPAFSLKPAAVKNEQPKQRVTFLSLLRSRTYRGNVLIYAACSASFFAWLTGSPFILSDMGYSPAAIGLSYVPQTIAFLIGGYGCRAALQKWQGHQMLPWLLGLFALSVIATWAVGFIPGVGLVELLIPFCLMAVANGAIYPIVVAQALRPFPQATGSAAALQNTLQLGLCFLASLMVSWLIATPLLTTTSVMVATVVLAALGYRMQYMRAEQQDDRLQAGSSQA
>NZ_CP035382.1|WP_142489224.1|3815570_3816503_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSGAAQELHRVPSAISYTVRQLEEWLAVPLFERRHRDVELTPAGMWFLKEGRSVIKKMQITREQCQQIANGWRGHISIAVDNIVRPERTRQMIVDFYRHFSDVELRVSQEVFNGVWDALADGRVEMAIGATQAIPVGGRYAFRDMGTLSWICVVASHHPLAAMEGPLSDDTLRSWPSLVREDTSRSLPKRITWLLDNQRRIVTPDWESSATCLSAGLCVGMVPVHFARPWIDSGKWVALSLENPFPDAACCLTWQQNDMSPALAWLLDYLGDSETMNREWLREPEVLTPGED
>NZ_CP035382.1|WP_142489225.1|3816499_3817525_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNNVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCFQKGYTLILGNAWNSLEKQRAYLSMMAQKRVDGLLVMCSEYPESLLTMLEEYRNIPMVVMDWGEAKADFTDSVIDNAFEGGYMAGRYLIERGHREIGVIPGALERNTGAGRLAGFMKAMEEALITVPENWIVQGDFEPESGYRAMQQILSQSPRPTAIFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARFFTPALTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP035382.1|WP_106993692.1|3817820_3817910_+|YnhF-family-membrane-protein
MSTDLKFSLITTIIVLSLIVASGLTAALH
>NZ_CP035382.1|WP_142489226.1|3818074_3819241_+|MFS-transporter
MRINFPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAIGVMVGAPLMTLLLSHRGRRNALIFLMAIFTVGNVLSALSPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWMGEAIGWRMSFLATALLGVVSMIALFFSLPAGGAGEKPEVRKELAVLLRPQVLSALLTTVLGAGAMFTLYTYIAPVLHDINQATPAFITAMLVLIGVGFSIGNYLGGKLADKSVSGTLKGFLLLLIVIMLAIPWLARNEVGAAVAMVVWGMATFAVVPPLQMRVMRVASDAPGLSSSVNIGAFNLGNALGAAAGGAVISSGMGYSFVPVMGAIIAGLGLILVFASERKQPEPVCATE
>NZ_CP035382.1|WP_142489227.1|3819276_3819858_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIGGTAFEGKTLEEIVRTSEGGVFNNAAQVWNHTFYWHCLAPNAGGEPTGELAAAITAAFGSFAEFKAKFTDAAVKNFGAGWTWLVKEADGTLAIVSTSNAGTPLTTRAIPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVAKNFAA
>NZ_CP035382.1|WP_142489228.1|3819980_3820784_-|endopeptidase
MARINKFSITLCALLFTSLTFTPVANASEQARPSAAHKTHLAKATEPKKKSSTSKTTKKESTSKKSSTKKSLAKTQSTHSSKKSRTTSRNASRTTQTASRVVTEKCTTRKGRKAQCVKTSKTTTLAEAHKVRVQKAQKTAMNKLMGQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDASPVDRGELESGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQDIQITSLSEDYWQRHYVGARRVMKANTLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP035382_2	2.1\|970030\|36\|NZ_CP035382\|CRISPRCasFinder	970030-970065	36	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	63742-63777	9	0.75
NZ_CP035382_2	2.1\|970030\|36\|NZ_CP035382\|CRISPRCasFinder	970030-970065	36	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	263080-263115	10	0.722

1. spacer 2.1|970030|36|NZ_CP035382|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 9, identity: 0.75

gggtaaggcgaagccgccacccgacacatccgccag	CRISPR spacer
gggtaaggcgcagccgccacccgacatcaaaaagag	Protospacer
********** ***************.    .  **

2. spacer 2.1|970030|36|NZ_CP035382|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 10, identity: 0.722

gggtaaggcgaagccgccacccgacacatccgccag	CRISPR spacer
gggtaaggcgtagccgccacccggcaaacatcatgg	Protospacer
********** ************.** *. .  ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

486 : 22374

Klebsiella_phage(41.67%)

terminase,portal,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142486214.1\|486_1758_-\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	8.7e-225	90.6
WP_142486215.1\|1760_3293_-\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.8e-291	97.8
WP_142486216.1\|3302_3737_-	hypothetical protein	A0A286S1P9	Klebsiella_phage	3.4e-72	96.5
WP_142486217.1\|3861_4071_-	serine acetyltransferase	A0A286N2R4	Klebsiella_phage	2.8e-16	63.8
WP_142486218.1\|4083_4374_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.2e-49	91.7
WP_142486219.1\|4497_4671_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_142486220.1\|5110_5338_-	hypothetical protein	NA	NA	NA	NA
WP_142489999.1\|6434_6854_-\|lysis	lysis protein	F1C590	Cronobacter_phage	4.5e-45	72.8
WP_142486221.1\|7386_7626_-\|lysis	lysis protein	A0A2H4JCI1	uncultured_Caudovirales_phage	2.9e-17	57.9
WP_142486222.1\|8111_8303_-	hypothetical protein	NA	NA	NA	NA
WP_142486223.1\|8689_9124_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	6.8e-28	50.3
WP_142486224.1\|9210_9696_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	1.8e-21	41.7
WP_142486225.1\|9968_10772_-	antitermination protein	F1C595	Cronobacter_phage	9.0e-119	80.7
WP_063136054.1\|10768_11746_-	DNA primase	F1C597	Cronobacter_phage	2.3e-169	87.7
WP_063136055.1\|11742_13353_-	DEAD/DEAH box helicase	F1C598	Cronobacter_phage	8.9e-275	85.3
WP_142486226.1\|13779_14076_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	1.6e-28	76.5
WP_063136057.1\|14059_14293_-	helix-turn-helix transcriptional regulator	A0A2H4JEY0	uncultured_Caudovirales_phage	3.1e-11	49.3
WP_063136058.1\|14412_15102_+	helix-turn-helix transcriptional regulator	F1C5C2	Cronobacter_phage	2.8e-84	65.8
WP_108720740.1\|15285_15606_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	7.4e-24	55.9
WP_063135777.1\|15972_16197_+	hypothetical protein	NA	NA	NA	NA
WP_063135776.1\|16197_16578_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	3.9e-40	71.8
WP_063135775.1\|16555_16798_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	2.2e-20	68.1
WP_063135774.1\|16984_17491_+	hypothetical protein	F1C5A2	Cronobacter_phage	1.4e-53	56.0
WP_063135780.1\|17503_18364_+	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	3.4e-132	80.2
WP_063135773.1\|18365_18788_+	hypothetical protein	NA	NA	NA	NA
WP_029591919.1\|18780_19026_+	excisionase family protein	Q8W657	Enterobacteria_phage	1.9e-35	86.8
WP_029591920.1\|19081_20395_+	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	2.6e-224	86.9
WP_142486227.1\|20373_21147_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.2e-59	81.9
WP_138369354.1\|21197_21593_+	hypothetical protein	NA	NA	NA	NA
WP_142486228.1\|21633_22374_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	1.4e-25	31.7

DBSCAN-SWA_2

809085 : 815386

Lactobacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142486845.1\|809085_809346_+	glutaredoxin-like protein NrdH	A0A0M7REK7	Lactobacillus_phage	2.2e-10	39.7
WP_142486846.1\|809342_809753_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	3.3e-16	42.3
WP_142486847.1\|809725_811870_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.1e-194	47.9
WP_142486848.1\|811879_812839_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	1.1e-134	71.0
WP_142486849.1\|812880_813750_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.0e-51	42.9
WP_142486850.1\|814068_814926_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_106994905.1\|815173_815386_-	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	1.3e-24	80.0

DBSCAN-SWA_3

4373041 : 4434969

Cronobacter_phage(24.07%)

coat,holin,head,terminase,plate,tail,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142489691.1\|4373041_4373461_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.7e-34	57.3
WP_004152765.1\|4373541_4375026_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|4375025_4375277_-	hypothetical protein	NA	NA	NA	NA
WP_142490105.1\|4375467_4375758_-	hypothetical protein	NA	NA	NA	NA
WP_142489692.1\|4375769_4376138_-	hypothetical protein	NA	NA	NA	NA
WP_142489693.1\|4376140_4378243_-	hypothetical protein	F1C5A8	Cronobacter_phage	1.8e-49	73.8
WP_142489694.1\|4378307_4380815_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	8.0e-214	48.8
WP_142489695.1\|4380801_4381194_-	NlpC/P60 family protein	F1C5F2	Cronobacter_phage	2.9e-46	64.8
WP_142489696.1\|4381193_4381664_-	hypothetical protein	B1GS46	Salmonella_phage	5.6e-28	41.7
WP_142489697.1\|4381650_4382130_-	hypothetical protein	F1C5F0	Cronobacter_phage	4.5e-41	51.0
WP_142489698.1\|4382129_4385072_-\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	2.7e-120	40.9
WP_142489699.1\|4385132_4385510_-	hypothetical protein	NA	NA	NA	NA
WP_142490106.1\|4385586_4385967_-	hypothetical protein	NA	NA	NA	NA
WP_142489700.1\|4386077_4386758_-	hypothetical protein	G0ZNE7	Cronobacter_phage	3.3e-53	48.2
WP_142489701.1\|4386818_4387574_-	hypothetical protein	F1C5E5	Cronobacter_phage	2.7e-72	80.5
WP_142489702.1\|4387640_4388024_-	hypothetical protein	F1C5E4	Cronobacter_phage	4.0e-40	63.8
WP_142489703.1\|4388020_4388461_-	HK97 gp10 family phage protein	A0A1V0E5P5	Salmonella_phage	6.0e-32	51.9
WP_142489704.1\|4388463_4388820_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.3e-32	59.8
WP_142489705.1\|4388823_4389060_-	hypothetical protein	NA	NA	NA	NA
WP_142489706.1\|4389212_4389383_-	50S ribosomal protein L13	I6R0P9	Salmonella_phage	1.8e-13	53.6
WP_142489707.1\|4389379_4389766_-	hypothetical protein	F1C5E2	Cronobacter_phage	4.0e-48	75.6
WP_142489708.1\|4389768_4390104_-	hypothetical protein	NA	NA	NA	NA
WP_032180602.1\|4390136_4391192_-\|coat	phage coat protein	A0A291AXD4	Shigella_phage	1.6e-102	53.2
WP_142489709.1\|4391188_4391650_-	hypothetical protein	A0A1B1W2E7	Salmonella_phage	7.4e-33	52.0
WP_142489710.1\|4391649_4393011_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.4e-127	52.4
WP_142489711.1\|4393062_4393698_-	hypothetical protein	NA	NA	NA	NA
WP_142489712.1\|4393728_4394730_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	7.1e-113	67.8
WP_142489713.1\|4394662_4396126_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.3e-147	57.6
WP_142489714.1\|4396138_4397611_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.3e-251	83.1
WP_142489715.1\|4397610_4398213_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	1.2e-78	81.1
WP_142489716.1\|4398740_4398986_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	2.2e-12	51.9
WP_142489717.1\|4399118_4399394_-	hypothetical protein	NA	NA	NA	NA
WP_114675523.1\|4399390_4399744_-	hypothetical protein	Q5QF73	Pseudomonas_virus	2.6e-14	55.8
WP_142489718.1\|4399851_4400031_-	hypothetical protein	K7PM01	Enterobacterial_phage	2.5e-13	72.7
WP_142489719.1\|4399987_4400260_-	hypothetical protein	G8C7W1	Escherichia_phage	1.0e-18	59.3
WP_142489720.1\|4400256_4400799_-	hypothetical protein	A0A0U2S643	Escherichia_phage	7.8e-74	70.9
WP_057107419.1\|4400795_4401077_-\|holin	phage holin family protein	G8C7V9	Escherichia_phage	7.0e-10	40.3
WP_057107418.1\|4401073_4401472_-	hypothetical protein	NA	NA	NA	NA
WP_142489721.1\|4402041_4402824_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.7e-106	72.8
WP_142489722.1\|4402820_4402961_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	1.5e-08	78.9
WP_142489723.1\|4402957_4403320_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	3.6e-51	82.2
WP_142489724.1\|4403316_4403607_-	DUF1364 family protein	K7PGZ6	Enterobacteria_phage	3.1e-45	90.6
WP_032612101.1\|4403609_4403810_-	hypothetical protein	S4TNP0	Salmonella_phage	3.3e-14	54.5
WP_142489725.1\|4403814_4404411_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	6.5e-98	88.3
WP_009483812.1\|4404999_4405251_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|4405250_4406735_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_142489726.1\|4407183_4407405_-	helix-turn-helix domain-containing protein	A0A2I7QN83	Vibrio_phage	2.6e-07	51.5
WP_142489727.1\|4408028_4408232_-	hypothetical protein	NA	NA	NA	NA
WP_142489728.1\|4408235_4408790_-	ead/Ea22-like family protein	K7P6J7	Enterobacteria_phage	8.1e-18	38.6
WP_142489729.1\|4408786_4408972_-	hypothetical protein	K7P7P5	Enterobacteria_phage	8.6e-25	85.2
WP_142489730.1\|4408968_4409535_-	hypothetical protein	A0A2H4N7F5	Pectobacterium_phage	1.0e-15	45.7
WP_142489731.1\|4409531_4409843_-	hypothetical protein	NA	NA	NA	NA
WP_142489732.1\|4409832_4410522_-	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	2.3e-14	28.9
WP_142489733.1\|4410534_4411224_-	phage replication protein	G8C7U6	Escherichia_phage	1.9e-77	59.8
WP_142490107.1\|4411207_4412194_-	replication protein	A5VW95	Enterobacteria_phage	9.9e-51	76.4
WP_142489734.1\|4412378_4412936_-	hypothetical protein	K7P7P2	Enterobacteria_phage	6.7e-20	38.5
WP_142489735.1\|4412938_4413166_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	4.9e-14	40.5
WP_142489736.1\|4413272_4413692_+	helix-turn-helix domain-containing protein	A0A0H5BBV1	Pseudomonas_phage	2.4e-06	46.0
WP_103179488.1\|4413888_4414095_+	cell division inhibitor protein	K7PM31	Enterobacteria_phage	4.9e-29	86.8
WP_142489737.1\|4414405_4417042_+	exodeoxyribonuclease VIII	K7P6V4	Enterobacteria_phage	1.2e-255	50.4
WP_142489738.1\|4417056_4418100_+	enterohemolysin	K7PKR8	Enterobacteria_phage	1.3e-149	74.1
WP_142489739.1\|4418134_4418596_+	hypothetical protein	NA	NA	NA	NA
WP_142489740.1\|4418886_4419099_+	DUF1233 family excisionase	A0A0U2RY08	Escherichia_phage	5.1e-21	67.6
WP_142489741.1\|4419099_4420353_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.4e-155	64.1
WP_142489742.1\|4420376_4421171_-	hypothetical protein	NA	NA	NA	NA
WP_142489743.1\|4421171_4421591_-	hypothetical protein	NA	NA	NA	NA
WP_142489744.1\|4421590_4422667_-	hypothetical protein	NA	NA	NA	NA
WP_142489745.1\|4423184_4424120_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.3e-140	94.5
WP_142489746.1\|4424165_4425539_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.9e-52	32.1
WP_142489747.1\|4425567_4425750_-	hypothetical protein	NA	NA	NA	NA
WP_142489748.1\|4426025_4427009_-	zinc transporter ZntB	NA	NA	NA	NA
WP_142489749.1\|4427178_4428306_-	chemoreceptor protein	NA	NA	NA	NA
WP_142489750.1\|4428746_4430021_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.3e-07	24.4
WP_142489751.1\|4430313_4431546_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.5e-16	32.8
WP_142489752.1\|4431590_4432157_+\|protease	DJ-1/PfpI/YhbO family deglycase/protease	NA	NA	NA	NA
WP_142489753.1\|4432168_4432648_-	hypothetical protein	NA	NA	NA	NA
WP_142490108.1\|4433162_4434491_-	hypothetical protein	NA	NA	NA	NA
WP_142489754.1\|4434519_4434969_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

4681439 : 4741336

Enterobacteria_phage(31.03%)

capsid,head,tail,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142489945.1\|4681439_4682321_-\|protease	protease HtpX	NA	NA	NA	NA
WP_142489946.1\|4682516_4684565_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.8e-83	33.1
WP_142489947.1\|4684584_4685271_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_142489948.1\|4685368_4685866_-	GAF domain-containing protein	NA	NA	NA	NA
WP_142489949.1\|4685997_4687281_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_142489950.1\|4687249_4689883_+	MCE family protein	NA	NA	NA	NA
WP_142489951.1\|4689959_4691402_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_032611546.1\|4691506_4691746_+	YebV family protein	NA	NA	NA	NA
WP_142489952.1\|4691850_4692042_+	DUF1482 family protein	NA	NA	NA	NA
WP_142489953.1\|4692042_4692684_-	protein-serine/threonine phosphatase	M9P0E4	Enterobacteria_phage	3.2e-58	50.2
WP_142489954.1\|4692862_4693810_+	DUF535 family protein	NA	NA	NA	NA
WP_142489955.1\|4694209_4694548_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_142489956.1\|4694562_4695435_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_142489957.1\|4695436_4695811_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_142489958.1\|4695947_4696178_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	9.1e-16	61.8
WP_142489959.1\|4696285_4696945_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_142489960.1\|4696969_4697632_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	1.1e-05	38.5
WP_142489961.1\|4697613_4699695_-	oligopeptidase B	NA	NA	NA	NA
WP_142489962.1\|4699785_4700436_-	DUF533 domain-containing protein	NA	NA	NA	NA
WP_142489963.1\|4700523_4700877_-	hypothetical protein	NA	NA	NA	NA
WP_142489964.1\|4701025_4702204_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_059307637.1\|4702308_4702950_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_142489965.1\|4702989_4704801_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_142489966.1\|4705034_4706510_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.4e-77	36.6
WP_142489967.1\|4706832_4707738_+	transcriptional regulator HexR	NA	NA	NA	NA
WP_106993322.1\|4707861_4709304_+	pyruvate kinase	NA	NA	NA	NA
WP_142489968.1\|4709412_4710384_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_142489969.1\|4710500_4711823_-	murein DD-endopeptidase MepM	Q8SBN9	Clostridium_phage	2.0e-14	38.5
WP_142490116.1\|4711838_4712783_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_142489970.1\|4712861_4713617_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	3.8e-18	28.9
WP_142489971.1\|4713613_4714399_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_142489972.1\|4714500_4715511_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	4.8e-08	24.6
WP_142489973.1\|4715519_4716131_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_039030827.1\|4716213_4716735_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_142489974.1\|4716769_4717510_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_142489975.1\|4717649_4718093_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_142489976.1\|4718094_4719867_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_142489977.1\|4720106_4720673_+	hydrolase	NA	NA	NA	NA
WP_100225776.1\|4720754_4720871_-	preprotein translocase subunit SecY	NA	NA	NA	NA
WP_000497460.1\|4721026_4721266_+	DinI family protein	K7PKR6	Enterobacteria_phage	7.4e-37	100.0
WP_048217473.1\|4721351_4721762_-	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_142489978.1\|4721953_4722286_-	hypothetical protein	K7PGV5	Enterobacterial_phage	2.0e-19	53.1
WP_142489979.1\|4722285_4722525_-	hypothetical protein	K7P7N3	Enterobacteria_phage	4.4e-29	75.6
WP_142489980.1\|4723543_4724500_-\|tail	tail fiber domain-containing protein	H6WRW6	Salmonella_phage	2.3e-28	43.1
WP_142489981.1\|4724509_4724812_-	hypothetical protein	NA	NA	NA	NA
WP_142489982.1\|4724811_4726548_-	LamG domain-containing protein	G8GWG3	Rhodobacter_phage	1.0e-26	39.1
WP_142489983.1\|4726612_4731517_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	7.4e-14	41.7
WP_142489984.1\|4731570_4732158_-\|tail	tail assembly protein	K7PM97	Enterobacterial_phage	1.0e-79	77.7
WP_142489985.1\|4732207_4732660_-	hypothetical protein	Q5G8W9	Enterobacteria_phage	1.3e-05	41.2
WP_142489986.1\|4732734_4733445_-	peptidase P60	K7PGV2	Enterobacterial_phage	8.2e-140	94.0
WP_142489987.1\|4733446_4734202_-\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.0e-140	96.0
WP_142489988.1\|4734198_4734537_-\|tail	phage tail protein	K7PHJ6	Enterobacteria_phage	8.3e-58	89.3
WP_142489989.1\|4734536_4736966_-\|tail	phage tail tape measure protein	K7PM62	Enterobacteria_phage	0.0e+00	72.3
WP_142489990.1\|4736983_4737253_-\|tail	phage tail protein	Q9MCU7	Escherichia_phage	2.3e-26	62.9
WP_142489991.1\|4737234_4737642_-\|tail	phage tail protein	K7PJU9	Enterobacteria_phage	2.5e-48	76.4
WP_114386298.1\|4737641_4738133_-\|tail	phage tail protein	A0A286S1Q8	Klebsiella_phage	4.0e-69	79.5
WP_142489992.1\|4738183_4738549_-	DUF3168 domain-containing protein	K7PHI9	Enterobacteria_phage	3.0e-53	79.3
WP_142489993.1\|4738545_4739031_-	hypothetical protein	A0A0U3TGT7	Pseudomonas_phage	3.7e-43	55.6
WP_142489994.1\|4739023_4739356_-\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	1.0e-36	67.3
WP_142489995.1\|4739358_4739559_-	hypothetical protein	NA	NA	NA	NA
WP_142489996.1\|4739619_4739946_-\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	6.4e-47	84.3
WP_142489997.1\|4739893_4740136_-	hypothetical protein	NA	NA	NA	NA
WP_142489998.1\|4740172_4741336_-\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	4.2e-202	94.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP035381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP035382

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection