CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041363	Citrobacter amalonaticus strain 133355-SW-C4-Cam plasmid p133355_SW_C4_Cam-1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP041362	Citrobacter amalonaticus strain 133355-SW-C4-Cam chromosome, complete genome	1 crisprs	DEDDh,WYL,DinG,cas3,csa3	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041362_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041362_1

2206486-2206609

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041362_1

>merge|NZ_CP041362|1|2206486-2206609|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAAATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP041362|1|1|2206486-2206609|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAAATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041362.1\|WP_090050030.1\|2202964_2203105_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041362.1\|WP_043000819.1\|2204965_2205763_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293813
NZ_CP041362.1\|WP_043000816.1\|2209043_2210192_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP041362.1\|WP_043000812.1\|2214305_2215472_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP041362.1\|WP_044254680.1\|2215518_2216100_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP041362.1\|WP_090050025.1\|2199322_2200000_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP041362.1\|WP_142765091.1\|2202654_2202846_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041362.1\|WP_043000822.1\|2201588_2202422_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270407
NZ_CP041362.1\|WP_043001940.1\|2206767_2208141_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP041362.1\|WP_090050041.1\|2203188_2204799_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP041362.1\|WP_043000814.1\|2211800_2212733_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP041362.1\|WP_043000810.1\|2216226_2217060_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP041362.1\|WP_142765089.1\|2199989_2200769_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_CP041362.1\|WP_142765092.1\|2210483_2211689_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP041362.1\|WP_043000818.1\|2205799_2206105_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP041362.1\|WP_086512609.1\|2214048_2214138_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP041362.1\|WP_099434109.1\|2198508_2199318_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP041362.1\|WP_090050043.1\|2208360_2209002_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
NZ_CP041362.1\|WP_044265381.1\|2212729_2213755_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP041362.1\|WP_142765090.1\|2200768_2201587_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
NZ_CP041362.1\|WP_090050043.1\|2208360_2209002_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.5387e-121
NZ_CP041362.1\|WP_043000819.1\|2204965_2205763_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	2.68208e-44
NZ_CP041362.1\|WP_043000816.1\|2209043_2210192_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP041362.1\|WP_043000812.1\|2214305_2215472_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.12013e-100
NZ_CP041362.1\|WP_044254680.1\|2215518_2216100_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	2.26163e-137
NZ_CP041362.1\|WP_090050025.1\|2199322_2200000_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.23181e-42
NZ_CP041362.1\|WP_043000822.1\|2201588_2202422_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.39857e-107
NZ_CP041362.1\|WP_043001940.1\|2206767_2208141_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP041362.1\|WP_090050041.1\|2203188_2204799_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP041362.1\|WP_043000814.1\|2211800_2212733_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP041362.1\|WP_043000810.1\|2216226_2217060_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	6.77572e-45
NZ_CP041362.1\|WP_142765089.1\|2199989_2200769_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.8401e-53
NZ_CP041362.1\|WP_142765092.1\|2210483_2211689_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP041362.1\|WP_043000818.1\|2205799_2206105_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	6.79042e-64
NZ_CP041362.1\|WP_099434109.1\|2198508_2199318_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.45649e-152
NZ_CP041362.1\|WP_044265381.1\|2212729_2213755_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP041362.1\|WP_142765090.1\|2200768_2201587_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	6.49115e-141

>NZ_CP041362.1|WP_043000818.1|2205799_2206105_-|monooxygenase
MPKLLQLHFAFTGPFGAEMAEQLRGLAESINQEPGFIWKVWTESEQNKEAGGIYLFESEETALAYLDKHTARLKNLGVDEVIAKVFDVNIPLSKINNARVG
>NZ_CP041362.1|WP_043000819.1|2204965_2205763_+|MBL-fold-metallo-hydrolase
MITLCKACGTSYDNHHGNVKRCKICDDERQYIPVSGQAWMDFDELIASHTNKWQQHTPQLFSLKTVPSFAINQRAFLLRTPVGNILWDCVANLDPATRTLIRAMGGLSAIAISHPHYYTTMQDWAEAFDAPVWLHAADRDWIMRDSPWIRLWEGEEHNVLPGVSLLRLGGHFAGGTVLYLEEGEGTILAGDILQVTPGADAVSFMWSYPNMLPLSSKTVGGIIQRLNTVTFSSLYGAFEGQNITHNASQIVQRSGEKYLSSLASR
>NZ_CP041362.1|WP_090050041.1|2203188_2204799_-|FAD-NAD(P)-binding-protein
MKKIAIIGAGPTGVYTFFSLLKEEQPLEIVVFERGNRAGIGMPYTHSDNSPMMLANIASIEVPPLFDTWLEWLQTQEAQYLAQFAVKKETLHQRQFLPRILLGDYFRAQFLQAVHHAENRGFKVRLYESCEVTDVSAVSTGVQLWTDQHTEPLHVDLAVIATGHVWPDDDESTHAFYPSPWSGLMDADVPAARVGILGTSLSALDAAMAVAVQHGTFHETEEHQVNFTLNKGSEALEITLMSRSGILPEADFYCPIPYEPLEYVTDEAIQREIAAGSTELLDRVFRLMQQELALADPKWARQMSLSSLDADSFPVAVFADRARSDPFEWAAANLKEVDENKRNKHTVAWRYTLLRLHEKVQEIVTHLNEQDSERFNVGLARVFIDNYAAIPSESVRRMLALHAAGILRILTLGQDYRKEIKADRTEITTHNDRLSFDVFIDARGQKPLKTKDLPFPRLRQQLLSCGDAIPDVGDDYTLQAPENVRGRIAFGALPYLMHDRPFIQGLVACQEIGNAMARAVSKPASRLRRRLSIYDR
>NZ_CP041362.1|WP_090050030.1|2202964_2203105_-|hypothetical-protein
MEIDLDNLVFNGLEEAQERNAERLDDADKKAESVIADDDCGDACKI
>NZ_CP041362.1|WP_142765091.1|2202654_2202846_+|hypothetical-protein
MEKVNMQMARRWMRVAITPKRTRQPGAEVNLQRVVESILPVATLYGVDIANIDPEWFRDQTTR
>NZ_CP041362.1|WP_043000822.1|2201588_2202422_-|ABC-transporter-substrate-binding-protein
MMATKTQRTKKTILALGVMLATSFLSIQAQADQLADIKAAGVVKVATFDANPPFGSVDAKTHQIVGYDVDFAQALAASLGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVIDFSVPYFVTGQQFLVPASSPDKLDEYSRARIGAVKGTTGEQALHQRFPQSRVLAYDDIPLALTALRNGNVQAITQDSTILAGLLSGAPDKAQFKILPDLLSKEEIGVGVKKGEPALLKAVNDELLRLESSGQAGKIYDVWFGPETKNPQPRAFKIEAR
>NZ_CP041362.1|WP_142765090.1|2200768_2201587_-|ATP-binding-cassette-domain-containing-protein
MLAGLFTPSAAGAADFHTLRQARVELRDVVKAYGDHRVLNGVSLTVEPGEVVTILGPSGSGKSTLIRLINQLESLSGGDIFIDDKPVGQLKGAALRQLRSRIGFVFQQFNLYAHLTAQQNITLALEYVHGWNKTDATQRAYALLKQVGLEEKASAYPAQLSGGQQQRVAIARALASSPQILLFDEPTSALDPEMIGEVLQVMKRLAHSGITMIVVTHEMHFAREIADRVVFIDGGDILEIASPEAFFTRPQHPRTQRFLQKVLDPLHQELSR
>NZ_CP041362.1|WP_142765089.1|2199989_2200769_-|ABC-transporter-permease-subunit
MPSMDWQGVLTGLPLQWILSGFLTTLWVSAAGIFLATLLAILLLALRLSGHRMGRRLVAGWVSLFRNTPLLVQLLFWYFAGWNLLPRSFIAFVNAEHGWSILPGNVWWLTPEFLCSAWGLGVFTSAFLVEEVASGLQAVSAGQREAAISQGFSSWQTFRHILLPQGLTNAWQPVVGQYLNLMKLSSLASGIGFAELTYQVRQIESYNAHALEAFAVGTALYLFTGVAFGLLMTHLGPAPRLEKKPQLRRFRFRSPQHDR
>NZ_CP041362.1|WP_090050025.1|2199322_2200000_-|amino-acid-ABC-transporter-permease
MIANIAVITDNLDYLLWGRLADGQPGGVLLTLMMALGAAVLALPAGIALAALAWRFPGVIRKGLFIWAELIRGIPLIFVIFWMWYLLPMLTGSDLPGAATVTLALAWFTAASVMHSVYAGLNALPAGQYDAAVAQGFSPVQALRRVLLPQVLRHILPSLTGICIGLLKDTSLAFIVNVPELTTVAGQVNSREQIYPAAIFIFTGLVYYLLCYGLEKATRRRFALR
>NZ_CP041362.1|WP_099434109.1|2198508_2199318_+|hypothetical-protein
MLITREDIRNWRVGAVMYRWFLRRFPEGGNYADVHRALSREGYLDWANSLVEYAWSRWLDEENFARQDISAMSRLARPDASMGDQQVANAGDNANLGCAGDNMKIASAGYASQIASAGYCVRIGSVGYNSHISSSGDRARLAAAGNSTRISSAGNGTRIASSGMRVRVSSLGERNHVASNGDLSQIVSFGANAKIANSGDNVHIICNGDNAIVASSGVVDSVVLGPGGCAALAYHDGKRMRFAVAVEGEAGIRAGVKYRLDDAHQFVEC
>NZ_CP041362.1|WP_043001940.1|2206767_2208141_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARQLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRDRIAHQVRQGFWLAGFVSLLIMIVLWNAGYIIRSMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFLGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFSAMLWYVKHARSMRDIRNEQRFSKPDNVVMKRLVQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGVCMACLTAIFTVTLREHIALLYNDNPEVVTLAAQLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITFTAYWVLGLPSGYILALTDLVVDRMGPAGFWMGFIIGLTSAAVMMMLRMRFLQRLPSTVILQRAAR
>NZ_CP041362.1|WP_090050043.1|2208360_2209002_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPEYMLDALETGASVAHNGCCLTVTEINGNRISFDLMKETLRITNLGDLKVGDLLNVERAAKFSDEIGGHLMSGHIMTTAEVSKILTSENNRQIWFKVQDPTLMKYILYKGFIGIDGISLTVGEVTTTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAAREAAVTKTASEA
>NZ_CP041362.1|WP_043000816.1|2209043_2210192_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDDWYRITNELLSRAGIAINGSSPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDQFFSKVLRAGLENQLPHHFKDTLRIAAARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADTLEAAQQAKLRLICEKLQLQPGMRVLDIGCGWGGLSHYMATHYGVSVVGVTISAEQQKMAQARCAGLDVSILLQDYRDLHDQFDRIVSVGMFEHVGPKNYATYFDVVDRNLKPEGLFLLHTIGSKKTDNNVDPWINKYIFPNGCLPSVRQIANASESHFVMEDWHNFGADYDKTLMAWYERFLAAWPEIAENYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGVEDGLRVAR
>NZ_CP041362.1|WP_142765092.1|2210483_2211689_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKGFLVWLAGLSVLGFLATDMYLPAFAAIQSDLQTPASAVSASLSLFLAGFAVAQLLWGPLSDRYGRKPILLLGLSVFALGSLGMLWVESATGLLVLRFIQAVGVCAATVIWQALVTDYYPSHKINRIFATIMPLVGLSPALAPLLGSWILTHLSWQAIFATLFFITLLLMLPALFLKPTTRARDDSKDKLTFTTLLRAKAYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGQQLLPWLLVIYALSVVATWAASFIHHITLAEILIPFCIMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSWLISTPLLTTTSVMLSTLVLAGLGYKMQLQPSNDSAQHDNCGIAHSESH
>NZ_CP041362.1|WP_043000814.1|2211800_2212733_+|LysR-family-transcriptional-regulator
MWSEYALEVVDAVARNGSFSSAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVVLTPAGAWFLKEGRSVIKKMQITRQQCQQIANGWRGQLPIAVDNIVRPERTRQLIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYTFRDMGKLSWCCVVASTHPLAAMSGPLSDDTLRNWPSLVLEDTSRTLPKRVTWLLDNQKRVVVPDWDSSATCISAGLCVGMVPTHFAKPYLNKGQWVALNLENPFPDAACCLTWQQNDMSPALIWLLDYLGDSETLNKEWLREPDETPAEEA
>NZ_CP041362.1|WP_044265381.1|2212729_2213755_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCFQKGYTLILGNVWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPDPLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFEGGYMAGRYLVERGHREIGVIPGLMERNTGAGRLAGFMKAMDEALIKVPENWIVQGDFEPESGYRAMQQILSQAHRPTAVFCGGDVMAMGALCAADEMGLRVPQDVSLIGYDNVRNARFFTPALTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLVERRSVADGPFRDYRR
>NZ_CP041362.1|WP_086512609.1|2214048_2214138_+|YnhF-family-membrane-protein
MSTDLKFSLVTTFIVLALIVAGGLTAALH
>NZ_CP041362.1|WP_043000812.1|2214305_2215472_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRGRRNALIFLMAIFTLGNVLSAISPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWLGETIGWRMSFMATAGLGVISMLSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPAFVTGMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLAQNELGAAVSMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIVAGMALLLVFVSARKQPEQVCVAS
>NZ_CP041362.1|WP_044254680.1|2215518_2216100_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGELADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKGKEGKLAIVSTSNAGTPLTTDATPLMTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNFAA
>NZ_CP041362.1|WP_043000810.1|2216226_2217060_-|C40-family-peptidase
MARINRLSLTLCALLFTTIPFMPMAHASKQARDTAGLTDSKKTSNKKKSTATAKKTNKTNQKTARKTTSKTSTKTASSSKKKITASAKTSKTASRKSKTVAAKKTAAVSWSEKCTPRKGHKPTCVKVKNTASGKIADAHKVKVQKATSTAMNKLMSQIGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPIDRGELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQEIQITSLSEDYWQRHYVGARRVMTPKTIR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041362_1	1.1\|2206529\|38\|NZ_CP041362\|CRISPRCasFinder	2206529-2206566	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947

1. spacer 1.1|2206529|38|NZ_CP041362|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaaaatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******.*****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

562369 : 570048

Thermobifida_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012908509.1\|562369_563224_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.4e-05	28.4
WP_042325036.1\|563257_563749_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003025078.1\|563864_564152_-	ribosome hibernation promoting factor	A0A0M7QCF2	Escherichia_phage	4.2e-10	43.2
WP_142764828.1\|564174_565608_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_044263650.1\|565655_566381_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-22	28.4
WP_142764829.1\|566387_566942_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_044255950.1\|566910_567486_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_042998303.1\|567482_568049_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	5.0e-55	76.5
WP_042998302.1\|568069_569056_-	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	5.1e-39	31.8
WP_142764830.1\|569070_570048_-	calcium/sodium antiporter	A0A2D1GNI8	Pseudoalteromonas_phage	7.4e-06	22.0

DBSCAN-SWA_2

1825284 : 1863299

Enterobacteria_phage(35.14%)

terminase,tail,protease,holin,portal,capsid,integrase,head

attL 1826245:1826304|attR 1861662:1861723

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012905355.1\|1825284_1825944_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.4e-47	54.9
1826245:1826304	attL	NA	NA	NA	NA
WP_061070694.1\|1826406_1827435_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	5.6e-81	50.3
WP_071888413.1\|1827373_1827652_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_142764988.1\|1827721_1830004_-	exonuclease	S4TNL0	Salmonella_phage	1.1e-113	45.8
WP_142765490.1\|1830145_1830472_-	transcriptional regulator	NA	NA	NA	NA
WP_043001146.1\|1830483_1830822_-	hypothetical protein	NA	NA	NA	NA
WP_046402092.1\|1830982_1831174_-	DUF1482 family protein	NA	NA	NA	NA
WP_043001144.1\|1831303_1831528_-	hypothetical protein	NA	NA	NA	NA
WP_044266817.1\|1831801_1832209_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	3.0e-30	52.3
WP_044266820.1\|1832339_1832567_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	3.8e-30	78.7
WP_094465142.1\|1832569_1833124_+	hypothetical protein	M9NZI6	Enterobacteria_phage	2.0e-16	33.7
WP_142764989.1\|1833171_1834278_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	7.0e-45	50.3
WP_139155853.1\|1834189_1834735_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.6e-66	73.2
WP_142764990.1\|1834750_1835467_+	hypothetical protein	NA	NA	NA	NA
WP_142764991.1\|1835463_1835670_+	hypothetical protein	K7PLX1	Enterobacteria_phage	5.8e-14	61.5
WP_142764992.1\|1835666_1836497_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.2e-70	50.4
WP_142764993.1\|1836811_1838974_+	hypothetical protein	NA	NA	NA	NA
WP_142764994.1\|1838966_1839959_-	DNA (cytosine-5-)-methyltransferase	A0A2H4PAK4	Aphanizomenon_phage	2.8e-29	30.5
WP_115625652.1\|1839955_1840345_-	hypothetical protein	NA	NA	NA	NA
WP_044266846.1\|1840630_1840864_+	DinI-like family protein	K7PM44	Enterobacteria_phage	3.5e-31	84.4
WP_142764995.1\|1840907_1841153_+	hypothetical protein	H6WRY6	Salmonella_phage	1.1e-22	65.3
WP_142764996.1\|1841278_1841479_+	hypothetical protein	H6WRY8	Salmonella_phage	3.0e-15	57.6
WP_043001131.1\|1841481_1841862_+	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	4.4e-47	71.9
WP_043001130.1\|1841837_1842872_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.0e-99	51.7
WP_142764997.1\|1842885_1843485_+	hypothetical protein	H9C175	Pectobacterium_phage	3.6e-80	71.9
WP_142764998.1\|1843823_1844270_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_142764999.1\|1844269_1844737_+	type II toxin-antitoxin system death-on-curing family toxin	A0A222YZ88	Escherichia_phage	2.8e-11	34.6
WP_142765000.1\|1845035_1846088_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	4.4e-174	81.8
WP_046401839.1\|1846231_1846555_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	6.1e-42	83.8
WP_142765001.1\|1846538_1846988_+	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	6.7e-63	78.5
WP_142765002.1\|1846984_1847521_+	DUF2514 family protein	A0A291LBG9	Klebsiella_phage	1.7e-12	50.3
WP_042319517.1\|1847764_1847977_+	cold shock domain-containing protein	A0A1W6JNX5	Morganella_phage	5.4e-23	75.7
WP_071887719.1\|1847987_1848176_+	cold-shock protein	NA	NA	NA	NA
WP_142765003.1\|1848241_1848472_+	hypothetical protein	NA	NA	NA	NA
WP_141227697.1\|1848680_1848854_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_142765004.1\|1849203_1849749_+\|terminase	terminase small subunit	E4WL18	Enterobacteria_phage	6.4e-92	94.5
WP_142765005.1\|1849723_1851646_+\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	0.0e+00	95.0
WP_043001120.1\|1851645_1851852_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.5e-25	86.8
WP_142765006.1\|1851848_1853441_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	8.8e-275	86.6
WP_142765007.1\|1853421_1854747_+	S49 family peptidase	O64320	Escherichia_phage	5.9e-184	79.4
WP_046401846.1\|1854756_1855086_+\|head	head decoration protein	E4WL24	Enterobacteria_phage	4.6e-37	71.7
WP_142765008.1\|1855156_1856182_+\|capsid	major capsid protein	K7PGW9	Enterobacteria_phage	4.5e-171	87.7
WP_142765009.1\|1856228_1856627_+	DNA-packaging protein	K7P7M3	Enterobacteria_phage	1.6e-15	45.3
WP_142765010.1\|1856638_1856992_+\|tail	phage tail protein	K7P6U9	Enterobacteria_phage	8.7e-42	66.7
WP_046401862.1\|1857265_1858231_+	hypothetical protein	H6WRW5	Salmonella_phage	2.2e-111	61.7
WP_142765011.1\|1858240_1860649_+	hypothetical protein	I7B6L0	Escherichia_phage	2.1e-131	47.0
WP_142765012.1\|1860818_1861058_+	DNA polymerase V	I6PD82	Cronobacter_phage	4.4e-21	57.0
WP_061070271.1\|1861059_1861380_+	hypothetical protein	K7PGV5	Enterobacterial_phage	6.5e-28	55.7
WP_142765013.1\|1862083_1862926_+	hypothetical protein	NA	NA	NA	NA
1861662:1861723	attR	NA	NA	NA	NA
WP_085048583.1\|1863092_1863299_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	2.5e-09	50.0

DBSCAN-SWA_3

2996910 : 3005333

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142765263.1\|2996910_2998944_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.0e-53	27.4
WP_043000154.1\|2999147_2999606_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.1e-49	66.7
WP_043001885.1\|2999650_3000121_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.1e-63	76.8
WP_043000153.1\|3000167_3000887_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_043000152.1\|3000879_3002568_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.4e-278	91.5
WP_043000151.1\|3002791_3003523_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	8.3e-103	89.9
WP_042318015.1\|3003582_3003690_+	protein YohO	NA	NA	NA	NA
WP_043000150.1\|3003670_3004402_-	ABC transporter permease	NA	NA	NA	NA
WP_044258667.1\|3004385_3005333_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.7e-07	26.1

DBSCAN-SWA_4

3539415 : 3550338

Enterobacteria_phage(71.43%)

integrase

attL 3539343:3539365|attR 3550337:3550359

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3539343:3539365	attL	NA	NA	NA	NA
WP_142765343.1\|3539415_3540627_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.3e-105	49.6
WP_131162445.1\|3540575_3542720_+	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_131162444.1\|3542716_3543388_+	DUF2290 domain-containing protein	NA	NA	NA	NA
WP_131162443.1\|3543595_3544162_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	61.6
WP_000984211.1\|3544178_3544424_-	transcriptional regulator	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_142765344.1\|3544420_3545158_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	6.2e-82	66.1
WP_142765345.1\|3545958_3546507_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	9.1e-30	65.8
WP_131162438.1\|3546503_3546731_+	hypothetical protein	NA	NA	NA	NA
WP_131162437.1\|3546727_3547048_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_142765346.1\|3547062_3549396_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4
WP_142765347.1\|3549837_3550338_+	hypothetical protein	A0A2H4J2P5	uncultured_Caudovirales_phage	2.3e-40	62.0
3550337:3550359	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage