CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031288	Mycoplasma capricolum subsp. capripneumoniae strain JF6042 chromosome, complete genome	6 crisprs	NA	1	1	1	0

1. NZ_CP031288

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031288_1

• CRISPR_ID: NZ_CP031288_1
• CRISPR_location: 249339-249447
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP031288_1

Consensus_repeat	Method
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	CRISPRCasFinder

spacers of NZ_CP031288_1

>1.1|249374|39|NZ_CP031288|CRISPRCasFinder
TTATTATACTAAAAAGTAAGATTAGCTAGTTTTAAGTAT

CRISPR arrays and Neighbor proteins around NZ_CP031288_1

CRISPR arrays

The CRISPR arrays of NZ_CP031288_1

>merge|NZ_CP031288|1|249339-249447|CRISPRCasFinder
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTATTATTATACTAAAAAGTAAGATTAGCTAGTTTTAAGTATAAGGAATTTCTGTGTATTTACACAATTTTTCCTTA

>NZ_CP031288|1|1|249339-249447|CRISPRCasFinder
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	TTATTATACTAAAAAGTAAGATTAGCTAGTTTTAAGTAT
AAGGAATTTCTGTGTATTTACACAATTTTTCCTTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031288.1|WP_036428817.1|254915_255110_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_142796127.1|248033_249335_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|224292
NZ_CP031288.1|WP_036428773.1|244069_245863_-|oligoendopeptidase-F	unknown	unknown	gnl|CDD|272947
NZ_CP031288.1|WP_036428542.1|256041_256353_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269200.1|254366_254732_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_029333247.1|257376_258525_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_036428516.1|226795_228595_-|alpha-glycosidase	unknown	unknown	gnl|CDD|200477
NZ_CP031288.1|WP_036428546.1|259066_259933_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_036428519.1|232674_233199_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269197.1|250191_250869_+|chromate-transporter	unknown	unknown	gnl|CDD|376780
NZ_CP031288.1|WP_019269205.1|257033_257414_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_052007440.1|220929_221616_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_045076090.1|246562_247918_-|peptidase-M17	unknown	unknown	gnl|CDD|376407
NZ_CP031288.1|WP_036428534.1|251136_251517_+|Abi-family-protein	unknown	unknown	gnl|CDD|377910
NZ_CP031288.1|WP_142796126.1|217166_220250_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173869
NZ_CP031288.1|WP_036428512.1|224417_226058_-|LppA-family-lipoprotein	unknown	unknown	gnl|CDD|274602
NZ_CP031288.1|WP_019269196.1|249571_250192_+|chromate-transporter	unknown	unknown	gnl|CDD|224970
NZ_CP031288.1|WP_029333244.1|245862_246546_-|hypothetical-protein	unknown	unknown	gnl|CDD|341186
NZ_CP031288.1|WP_052007452.1|255306_255744_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269187.1|223502_224384_+|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|319818

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP031288.1|WP_045076090.1|246562_247918_-|peptidase-M17	gnl|CDD|376407	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase.	5.63692e-140
NZ_CP031288.1|WP_142796127.1|248033_249335_-|AAA-family-ATPase	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.0706e-50
NZ_CP031288.1|WP_036428773.1|244069_245863_-|oligoendopeptidase-F	gnl|CDD|272947	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (, with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP031288.1|WP_142796126.1|217166_220250_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.00002e-11
NZ_CP031288.1|WP_036428512.1|224417_226058_-|LppA-family-lipoprotein	gnl|CDD|274602	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family. Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa.	3.37704e-124
NZ_CP031288.1|WP_036428534.1|251136_251517_+|Abi-family-protein	gnl|CDD|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	1.29352e-18
NZ_CP031288.1|WP_019269196.1|249571_250192_+|chromate-transporter	gnl|CDD|224970	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism].	1.02624e-26
NZ_CP031288.1|WP_029333244.1|245862_246546_-|hypothetical-protein	gnl|CDD|341186	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S.Cep9333ORF4827P) TRD2-CR2 and Corynebacterium genitalium sp. nov. S subunit (S.CgeORF10704P) TRD2-CR2. The recognition sequences for Crinalium epipsammum S subunit (S.Cep9333ORF4827P) and Corynebacterium genitalium sp. nov. S subunit (S.CgeORF10704P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. This subfamily of TRD-CR's shows similarity to TRD1-CR1 of Aminobacterium colombiense DSM 12261 S subunit (S.Aco12261I), which recognizes 5'... GCANNNNNNTGT ... 3'. This subfamily may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	0.00526515
NZ_CP031288.1|WP_036428516.1|226795_228595_-|alpha-glycosidase	gnl|CDD|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP031288.1|WP_019269197.1|250191_250869_+|chromate-transporter	gnl|CDD|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	1.61123e-12
NZ_CP031288.1|WP_019269187.1|223502_224384_+|Cof-type-HAD-IIB-family-hydrolase	gnl|CDD|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.28816e-57

Protein sequences

>NZ_CP031288.1|WP_142796127.1|248033_249335_-|AAA-family-ATPase
MLMIINRDFYLNQLINKMNNSKVKIVTGIRRCGKSFLLFNLFYKYLISINIPSDQIIKISLDGYDNRMYRTPTTLNNFIQSKITNKNKKYYLLIDEIQYCEPEINEFAPNTEKITFVDVLLSFYNNPNLDVYVTGSNSKMLSTDILTQFRGRGDEISLNTLSFFEIYDLFENKDKALKHYMLYGGLPAIYNLKTDEEKQKYLKNTFDETYIKDILERNSLTSETGEILDALLNFISSAIGSLTNPLRLANRFISEKNIKINSTTISKYLNIFKDSFLIRSSIRYDVKGNKYFNTPLKYYFTDIGLRNAKLSFRQYEENHIMENIIYNELYRRDFNIDIGIVEIQQNQNNKRTRTTLEIDFIASKNHQKYYIQSAYSIWDSQKKEQETRSLNNVNDSFKKIVVVYEDIIPWHDNNGIYYVGLKEFLLDESILNN
>NZ_CP031288.1|WP_045076090.1|246562_247918_-|peptidase-M17
MLKFNDKKKELTLICLTDVKDKKYVVDTDLSTSFISEEKTFYMVIKKDQKDLFRKLKIAFKNFVLENKYNINIDVDSFFNLLNECDCKEKLINTIYETIAFETFDKVSYKKDNKPNQVVYNLLTSFDVKDLEQKEAIKMEFVNFARMLQDTPPNIATSEYLAEKVVEKAKKIDGLKVTVLGKKEATKLGMNLFLAVNAGSIYEPQAVVLEYVGDENEPKKALVGKGITFDSGGYNLKPSSAMEGMKFDMSGAAIMLSTVMALAKMKAKVNVVGIGMFTDNRIGSTATLPQSVVKSMNGLTVEIDDTDAEGRLVLADGITYAIREKQATEIWEASTLTGSVVSALGSYATGVFTHCDKRWEIVKSVSKFSGERMWRLPLYEEHLEEVRNDAINADITNATKNYEAESSKAASFLNEFREDKPYVHFDIAGTDSIKGRGQGVLVKTLFEIFNK
>NZ_CP031288.1|WP_029333244.1|245862_246546_-|hypothetical-protein
MKLKNWTFYKAKQLVKLNESNQVLEDIAVLILRPDINKEKTLLAIGLDKKVVNSLIIDLQNKAFEENELFEIFKENIGFVSTEEISEIDAKGLNLSTPIHQDNIKSIIKIYNLFLNVESIEFDTKDYQDLENIQNQEDVFTNVDFENIPLPALLQTLNVGMENYKQRVEEIFELDGKESINKKLELVNIQSNLIAFFDQALRKMDDIITKLSEQNAELIKKLESQEK
>NZ_CP031288.1|WP_036428773.1|244069_245863_-|oligoendopeptidase-F
MKRPEALKEYKWDFDYLYKNQDEWKNDLNYLIEISKEFKNFKNKLHEKETFLKCLDLEEKVDFITNKLSTYTRMGDTNQADEVYRTLEALLMNVLQDIEIETSFISPETKKIGFETISKWLKETKVYQRYLYGYEKFFEQVKHILSEHDEELLSKISKGYTAISGMYDTLAYADRQEETINYKGIDQTLTNSLFLEILQDSDPIKDQDLRLKASEIFSKNFSTKKHSFALIYEGILQSDYQDTKLRNYDSSLQASLSSDSIPVDIYLKLLEVGKKYIKPLEDFLLLTKKHFKLNKFYPSDKQLKLVKEYNQTFTVEQAKEHIKKALSILGEEYLKNLEIAWGPNKIDYYEDTNKRDGAYSTGGHGVDPIILMNWDDKLNSVNTLAHECGHSVHTLFSEQNQVYPLSQYPIILAEVASTINEHLLFDYMYKNAKLKEEKIYLLQERIFNLVSTFYRQIQFADFEYRASQLVSKQTPLTSEVLNNLFKEVEDDYGYKVFDKLDENTKSGYGWPRISHFFHSPFYVYKYAIDVTASYKLYDDIKNGNIQTTLDFLKAGGHKEPLKIMLDAGIDFNKEQTYLPLINGISDYIKELQSLLEE
>NZ_CP031288.1|WP_036428519.1|232674_233199_+|hypothetical-protein
METKLLFGHKTHIKKPNAYFLLGICIVFIIAISASLLVSYSYLVREIKILVDSNTSLNQTELDKMISTKRSNFFKYYLFRYILNAITVIIFALYCVFAINRITVGYVFVGLWLIVWFGSAFGELILYKTLSTISIINIVLFSLVLISFYFIVKDISENKRQLRYQKTKKRQYSF
>NZ_CP031288.1|WP_036428516.1|226795_228595_-|alpha-glycosidase
MKLIDRVAIHHQQRSNMAYCYDKDYIHIILRTKKDDLKKVVIHHGDPFLRGHYLLGDDYIDLKPKEMTKTGSTKLYDYWFVELKPDFKRLTYFFELFGIDDDHCYFGEKGFYETSDFKMINTGGWGFNYAWMNPNDIYQAPNWINDTIWYQIFPERFANGNPDISPKNVLAWNSVDPSYDSFFGGDLQGIIDHLDHLVELGINGLYLCPIFKAKSNHKYDTIDYLQIDPNFGDKKTFKRLVEECHKRNIKVMLDAVFNHAGYWNKFWQDVLKNQENSKYKDWFYINKFPLQEQIIDKNNQHKKINNYYTFAFHEVMPKINTTNKDAKKYLLKVTNYWIKEFDIDAWRLDAANEVDHEFWRDFRKTVNKNKSIYILGEIWGYAHPWLKGDQFDGVTNYMITSPICELVTKTIKPSRFNDKTTEVLNNYPRNVFKGMLNCLTSHDTTRLLTLCNNDIKKFKLAYSLVFMLAGAPSIYYGDEIGLDGAHDPLNRKCMNWNKDQWNYEIFNYLKKLIQIRKKNPVLGSYGILKYTLINDDKNYLEFIKYEDNNTYLILVNNSDHQLEIKKDELVNNIDLISDQIQTNKTISLDPISMKVFKIK
>NZ_CP031288.1|WP_036428512.1|224417_226058_-|LppA-family-lipoprotein
MRKFNKLFLAFLPISSLSIFSVVSCTTNNKNNKPNEIPQLPNSKKPDNKPESANKTENKKPTEGSNSEKQPKIKPIPGDPETVPDNSNNPKQPENNDNSGSNNNYNNPNNEEPQGDEPQSDEQNDSKNRVDFLDIEKINKKIDFKYITTYNNKTANAAWVQIKSRGQNIFKEIIFNKNKEILETYQIEFDSESLPEIIDEKGIISKVKIKFTKFNESKIFIFSFIGFKEEAKSEKDNKSKKNEYIKVKDKINEKIKGLYPSLVAYMLLYVEDQNKYNKDIKQSGNVINFQDLENKNDSLFSSDFPGFSIGTKELLFEYKEEYRQIYKDEIISAAYDDLNGILQLEVQIRNTDDHTNDKGDPLITKKFKLEGFRKVDIKNENNNVIFVDLLKNDFKEIVNKGSLTEIVKQFITYGAYNKKIGLGNSNQTGIKNELFKKLIVNINDKSNIYRTTQTLSLDRNNGKKYKSILGLKNNMSLYPFHTRANKDSIKNIYLTITNENGIKEAKIEFELYLSVYASTFTDLTDNTYASEKNIKLTITQIAQINQ
>NZ_CP031288.1|WP_019269187.1|223502_224384_+|Cof-type-HAD-IIB-family-hydrolase
MKLKDLNLKRLILIDLDGTTLTNQNDQIHEITKKAILDAQSNGHIVCIVTGRPFRAVEHIYKELNLTTLLANFDGAHIHDPNSKLMKRVVLPINYEIIMQIINEPIIKNNVENILIEYYDKSLLWKADKELEDFFHLNKVKSSKDFVFIKASPYTDWKSPSNNLVLKLKSNESKDEVIRVLTKYQDAVKIQSDILYGIVTSKTKPVITLTNKNADKGFASIFLAQYYNKDIRDVIAFGDQLNDYEMLKTVGCSIAMKNGVNNLKFIAKGITHYTNDEGGLGHYLNLLLEGKEV
>NZ_CP031288.1|WP_052007440.1|220929_221616_+|hypothetical-protein
MLLFQITKIRTLINVFPELLKALENKSSSVKYLGLSNFQINNPITIKAQNTKLVEELNFSILSFNDLEKEFNQNINNTTFEKLKEGYKIKLSNRSKLYSIFFKKNSSLSDNDHEHILLFTSPMKPIVLKNYINVINTNNIIAELKNTDSSFKNIDLEVKNNTIINNQAIIKLKSNHDLYEDEIRVIFNNKSKFFKDNKYIILLGVLGSGFLISSLGWLTYSLIKRKNK
>NZ_CP031288.1|WP_142796126.1|217166_220250_+|ABC-transporter-substrate-binding-protein
MKKVLGMTVLGSIIATASASIVSCSVGISLDKILNRRNSNTKVLRELTNYSLANLNSATNNTSNDADIIANLQDILLTVNRHDHYEGALAEYWDHNKDKDYWKFRIRKNAYWTRIENGKQVKGPQITGLDVFNTFRYVLNKNNLALTTEHFLTNFKHVHELMEFIDTLSDPNNKEFYDARFNKDLPGDLRTNELKSSYWIDRAILAFNITPEDSKKAKELALDASISTKELVKKSFENGKIVNNGKSSVEKDKNEDGLDSNIFDVGFYLSKRISYFESVISYLAFAPIPEIALQYASDKDQKSSIYAGTAYGKPLGKKSGYNGLWYSGAYVIEDYFPGSNLNLTKNEFYYNKDKVYIEKINYSYVNKADAATRRFLFETGDVSSTKINANDLAGWKKYVGSEDSPVFEETNILKQKPTTTWAFGFNFHTKGTQIYDKIELDNEGNLKENSKKRPRTAKEDSILNRALALKSLRIMARYVLNRSLYAKFHSEARDGNDRPTSTQLRNTFTSQYVSTYNDENYKVVDKESGQKVADYADFLAKDYYDITKYDDNNPKSKNASSTPVSSRPRRSADSSSSTSISQADEKSWSDWIIEVLKAKNLHNESKIKKWANRFGKVKDAKNPNSNKKVSVYNEGNDAYLENDLLAFTAFLKEDQLQQVNGKNGSFDLKRDANKVEFKNETLAKQFAELIGVYDTGIDSKKDIKKQDSLLTNLYKKINLLKQQVKEDLEKIAGIKDFKKPITIPFLLNPTGADDFKIKIAQFFGSFNYLVIKFGKDDIDSPFVFDIDKPIDFSNYLKDIRAGKYGLAAFGWAPDYDDPTNYLATLKYGGVYEHIQSWTKVFDKSNLESTNTNGQQRKDIKLDLKVNDTSVDKDVLNKAYEDLKNIIQYFTNELTYVDENEADIYQRYTKLAKLENFYTLASAVIIPTHTHQADTLPSISYVDEFSKPTWPTGAHAKRYVGVKMFDKIVTRKQYEKQKAEYEREKQDGYKPLNPMKFDEKTGKNVYFDNFKGKWREQWKEEYLKKNKK
>NZ_CP031288.1|WP_019269196.1|249571_250192_+|chromate-transporter
MNKKEYIKPPTFWNIFLFILLITFVGFGGGNAIMPVIKRYAVDKYKWLDEDEFHQNVVLTNMLPGPAAIQTTAYIAFKSLSKFKAYLVVSLASMPHTFFAVGLVFAFNKIPTQYLIVVQLGVLIAITGALLGFGYNYFKKGKKVMKLSLWLVLFLTTLLFSLFVPTPYNVPILVMILVIAIYSTIFIIKSKKTKKVDSNEIKKGIE
>NZ_CP031288.1|WP_019269197.1|250191_250869_+|chromate-transporter
MLSFIAFLVTLVLLIFVSLSVFGGGQVFMPIFVWLWKSLNSWFKIEISEEFINTVFAVSNSTPGILSPKFAAITGYMIAQGQWWGFVAMIFTYLAFVLPAIFMMMIAIKYSQKFHQSTFFKKLIDIMNPVVAGIIIALAIEIFINCMFPYFVFNESVSEYWKFIDPNKPNQSMKFFTGWRLIALYCYVPIGIIISLFLYLKKVPIFGLIFANIIFCLVLFEPWLG
>NZ_CP031288.1|WP_036428534.1|251136_251517_+|Abi-family-protein
MKRPKEFKTFEEQIEILKSRGLIISNEQKAIEILKQENYYNIVNGYKDLFLKKSLDNNKDIFIENTNFDELYSLFLFDRELRSILLKYILIFERDFKTIIAYNFSKKYNKNNRIDSYLYPENYKDN
>NZ_CP031288.1|WP_019269200.1|254366_254732_-|hypothetical-protein
MINNKSDFDTTISNSLEDDFGMGLKEKIAKRNSAYSKRTDLAKNFINTSSISKSVQIEQNIFSNKLKPVKVKRSSLYMNERVEQLYQKLVYTYIEKRGKAPSITDIFVEGLYSLQNKLDNE
>NZ_CP031288.1|WP_036428817.1|254915_255110_-|hypothetical-protein
MWNYKSIDWDDSSNVKKITQQAYDLVQKEQLEKEKQLKEKQAQQQIKKQEEADTNNHNHKFKMK
>NZ_CP031288.1|WP_052007452.1|255306_255744_-|hypothetical-protein
MNNIEIGIVCKERYKEFSFPIAKNKNGSLIERHGNNRLYIIFFSDEKVFYLSAKTILDSNRKTTTGDKTNVIFKKDLYGNDREIAVNCSVINVMDRELFDSLYIKDSSFNNFQTDIEHYNKIMKKLFDVFNEIKYFEVDHIDEKN
>NZ_CP031288.1|WP_036428542.1|256041_256353_-|hypothetical-protein
MSSLRDKIINSIINELESKYFIKYKKHYLIDIDELNMLVKKIAKKNDQVNAGQLLLKPVNRVSQNQALIKVENFNKYFEPVNDLNKPIKIDRANQATKQKNCY
>NZ_CP031288.1|WP_019269205.1|257033_257414_+|hypothetical-protein
MSLRFSLSDQLLDLSLDDELLVPLAPLEPPLFDDEPLELLSIHDELLELWLFEAGFLNLSICKTNVSVGWMKRLFLYSSFKFTLTFKVLVKELKLVDIHIFSKSSLLLLNSLVESKLETKLSLVFF
>NZ_CP031288.1|WP_029333247.1|257376_258525_-|hypothetical-protein
MDFKWYAWDPKTYAHQRELIEEFQKDEKGKTKRDKTGKPIKNPKYDPKIDPNTGTKKELIWFDFNTHNPWIINSIYGDEKKYYEITNLPPRTKTLFAPHNDENDLDRGVIMEAVVIGKGALRQISKNIKDYRVHKLNRNGQFIRIDDTWINILDKNTTESSYFSTEGIWLFTNNADKSITNFKIVYITKEEKPNGYFTDYVTESHKTIKPLWQTNQGRRFYNYLTTKSLKNEKIISLKYEEAMEYYKQYINDLYFKTDWENYVQINPKFKQIEKDKYTVEQFKNKYINKPNNFQNTYLDEFNNKKLVSVTKLEFNNEKTGIYVYLKLNSNEIKYHLLTDKYFIPVKFKDIKIENKSTINLNLNSNYIYSIAKKILKRVLFLI
>NZ_CP031288.1|WP_036428546.1|259066_259933_-|hypothetical-protein
MNKLLLTLSLANLFSFPTNLILRSENSSLTNKRSINSRYFDFPNKYLETSTRYEEKDFSTEINITNGPKIWFPTIKNEEDLKNAQWRDFDYDREKSSNWTKYYYGFKKILKTRSYYDEIRNIPPNISKYAEIIQGFVDKNWNNHLNKNDVYEMKIELVAGNYKMTRNPHGYSNGYPRAFYLSVDDDSRLTKIRIYAKLRTKITKSDQRRKYQSSWYKWRNYLQNKSFITIDSDTGGNLKTELVGNQMSDGFKTNKQFLEDKINEFNSKNRNDLTLQYEITSSNIFFYI

Crispr_ID: NZ_CP031288_2

• CRISPR_ID: NZ_CP031288_2
• CRISPR_location: 358444-358630
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP031288_2

Consensus_repeat	Method
ACCAACCCATTGGTAACTGAGATACTTCAAATGTAACTGATATGCGTTGTAT	PILER-CR

spacers of NZ_CP031288_2

>2.1|358496|23|NZ_CP031288|PILER-CR
GTTTAAAGGTGCAACTTCATTTG
>2.2|358571|26|NZ_CP031288|PILER-CR
AATGTTTTTAGGAGCAAAAAACTTCA

CRISPR arrays and Neighbor proteins around NZ_CP031288_2

CRISPR arrays

The CRISPR arrays of NZ_CP031288_2

>merge|NZ_CP031288|2|358444-358630|PILER-CR
ACTGAGATACTTCAAATGTAAAAAATATGCGTTATATGTTTAAAGGTGCAACTTCATTTGACCAACCCATTGGTAACTGAGATACTTCAAATGTTACTGATATGAGTTGAATGTTTTTAGGAGCAAAAAACTTCAACCAACCCATTGGTAACTGAGATACTTCAAAAGTAGCTGATATGCATAGTAT

>NZ_CP031288|2|1|358444-358630|PILER-CR
ACTGAGATACTTCAAATGTAAAAAATATGCGTTATATGTTTAAAGGTGCAAC	TTCATTTGACCAACCCATTGGTA
ACTGAGATACTTCAAATGTTACTGATATGAGTTGAATGTTTTTAGGAGCAAA	AAACTTCAACCAACCCATTGGTAACT
GAGATACTTCAAAAGTAGCTGATATGCATAGTAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031288.1|WP_042620249.1|354558_354816_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269305.1|367375_367921_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269302.1|365079_365748_+|DNA-methyltransferase	unknown	unknown	gnl|CDD|366913
NZ_CP031288.1|WP_019269277.1|353525_354131_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_036428644.1|363405_364221_+|DUF285-domain-containing-protein	unknown	unknown	gnl|CDD|308794
NZ_CP031288.1|WP_019269275.1|352390_353038_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269297.1|361822_362236_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269273.1|351734_352187_+|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|239942
NZ_CP031288.1|WP_019269280.1|355140_355878_+|ParA-family-protein	unknown	unknown	gnl|CDD|224113
NZ_CP031288.1|WP_019269303.1|366237_366708_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP031288.1|WP_036428647.1|364275_365079_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|129721
NZ_CP031288.1|WP_019269299.1|362803_363352_+|DUF285-domain-containing-protein	unknown	unknown	gnl|CDD|308794
NZ_CP031288.1|WP_019269274.1|352235_352373_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269292.1|359908_360094_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_036428633.1|355877_356090_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269287.1|357901_358183_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269304.1|366919_367297_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269285.1|357620_357812_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269276.1|353063_353447_+|plasmid-replication-protein	unknown	unknown	gnl|CDD|366772
NZ_CP031288.1|WP_036428639.1|361160_361772_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP031288.1|WP_019269280.1|355140_355878_+|ParA-family-protein	gnl|CDD|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.51987e-24
NZ_CP031288.1|WP_019269303.1|366237_366708_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.71349e-29
NZ_CP031288.1|WP_019269302.1|365079_365748_+|DNA-methyltransferase	gnl|CDD|366913	pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA methyltransferase.	1.94739e-08
NZ_CP031288.1|WP_019269299.1|362803_363352_+|DUF285-domain-containing-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	8.3434e-42
NZ_CP031288.1|WP_036428644.1|363405_364221_+|DUF285-domain-containing-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.58759e-59
NZ_CP031288.1|WP_019269273.1|351734_352187_+|single-stranded-DNA-binding-protein	gnl|CDD|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.7661e-21
NZ_CP031288.1|WP_036428647.1|364275_365079_+|AAA-family-ATPase	gnl|CDD|129721	TIGR00635, Holliday_junction_ATP-dependent_DNA_helicase_RuvB, Holliday junction DNA helicase, RuvB subunit. All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair].	9.03472e-07
NZ_CP031288.1|WP_019269276.1|353063_353447_+|plasmid-replication-protein	gnl|CDD|366772	pfam01719, Rep_2, Plasmid replication protein. This family consists of various bacterial plasmid replication (Rep) proteins. These proteins are essential for replication of plasmids, the Rep proteins are topoisomerases that nick the positive stand at the plus origin of replication and also at the single-strand conversion sequence.	9.86308e-21

Protein sequences

>NZ_CP031288.1|WP_019269287.1|357901_358183_+|hypothetical-protein
MKKIDFNNFLNKPVFIKLWNDSELYKGYLIKINTKPEQYRILPFEYNSTNYNIIFSKSDVEWLQTKYNIRYLVNDFILTRKEKQLYLQNKVMN
>NZ_CP031288.1|WP_019269285.1|357620_357812_+|hypothetical-protein
MKKVNILNLIRYHIEKNDISFIKEALIIANNFTINGDIQLAEYIIELISPISDQYNVIKRWIF
>NZ_CP031288.1|WP_036428633.1|355877_356090_+|hypothetical-protein
MPKSILGNEYSNHGVSYKQSSSKRVCITISKQTKLLEEEYKNILGTSSNRSQIYSNYLKTLINKLKNGVK
>NZ_CP031288.1|WP_019269280.1|355140_355878_+|ParA-family-protein
MKNYKKILIHNNKGGVGKTLITANLAVYLARQNKKVLLIDFDRQRSLTHFFADTKQEESFKIFNKNETVEILQTDIENIWIVPGDFKIEPLIPFMQMYACLRKFENDNFNHFDYIFFDLHSALTNTTTLSYKNADSIIFITDTSLNSASILTDFVEDWKYTVTESGLENNIKAVILNRFQPTQQALETLDLLKRKVPNYLLNTTIPNQANISKSILAGQKWMFELASTKEMWTSLIKELTERGAI
>NZ_CP031288.1|WP_042620249.1|354558_354816_+|hypothetical-protein
MQNWVSPTKKDVMSIIWIIKKYNLLTYQDLLKTTRALKNTHYYNIATNYPKLCINLIDKNKSKKNKNKKTKGKNNYEHSKFNWTT
>NZ_CP031288.1|WP_019269277.1|353525_354131_+|hypothetical-protein
MKVLLVEHISNLSKDLILDKNQLITKINDEIQSFDLNKQTKLIQKLIKINELSESLDKEFRKEILISLQLPVFNYQSLDNLIYFIENIANCFDVQKLGDLSININQITFIDFCNLNEYINVDSLLDYFDEQLKENGLEAKLSFKLIDELLDINHSEEKYVILNSWQNAILKDLEDRQKAIYWDCELIQRYKTYLIKKILKK
>NZ_CP031288.1|WP_019269276.1|353063_353447_+|plasmid-replication-protein
MKWQDSISKEWCVISYPGESEHLDWKERLFKLPIVIKLATIIHDNDLDNQRNIKKLHRHSILCFPKPIDYLTAKLIIKQIFNIELIQPVYSIVKYYQYFTHSNQPDKFQYDSSKIEHLNGFNILDYQ
>NZ_CP031288.1|WP_019269275.1|352390_353038_+|hypothetical-protein
MEIQSKYFKNNELLNLIQFTWTPPTDIEINKKISLIDENLDNFPIDKQNEFIYQLTQLSKKMNFDSLDLNDLFLENLISKNFNFESLASVNNFFEVLVDKQNIDELNSIAKQNNWTTFHSFINNLKFQQVKDLLDSYEIDIKMSGLRSNKRLPFKLIDELLNLNDTDFVILMPSNFAILKFAKTHKKSIYSFDETLIFYKEFVLKEILKNKNSTN
>NZ_CP031288.1|WP_019269274.1|352235_352373_+|hypothetical-protein
MNKKIAFKIDEEHFEGIKEKGNELGMTMGGYVRYLVLKSFEMQQN
>NZ_CP031288.1|WP_019269273.1|351734_352187_+|single-stranded-DNA-binding-protein
MNQINIVGRIVNNLELKSSKNKNPFVFFTVAVNEFWNSERQTTYIPCVVFNDKAVNLVQYINKGDLVSIVAKLNIRRIVEDNGDFKNIFNVVVSKIELLSRAARSSYKDNQEQSDLDVSSNKNSSLGNEIFSDEQKEIFGDEIPDSVIWD
>NZ_CP031288.1|WP_019269292.1|359908_360094_+|hypothetical-protein
MIEYLFLLKITKELCEFLDDDGENDDFTNRDYKHQYIDSYEPSDEQIKNFIRTIERINKEK
>NZ_CP031288.1|WP_036428639.1|361160_361772_+|hypothetical-protein
MKFEYDDIKYLISFAEISNEDFCKEMNETFKKLSIENQVLYRDYIIKITNNIEKLEDKQAQKLYELIIWTKKITDQVEMLYYLKRIYQYSKSLVFHKKDYVQSICNYEFEKYLEDFNFKSVELVKEAIMLDFTLNKFESEYWLFYPIEEKQKLSYASDDDYIKDDGFWQFNIWSQQQVEQEYIDYVFKKFYKEIKNKFSSKLN
>NZ_CP031288.1|WP_019269297.1|361822_362236_+|hypothetical-protein
MKEIKTILYYPQKIQERLEDDKFDLFDSITQELRDKDIIEEYLEQIYQFKPVSDFSSPELLDFLKNHNLGDFEDWIYIDKKENKLKVYEKAYVESIILADVLAELANYIAYRKEEILDFDHKEITLDKVDKKLLELE
>NZ_CP031288.1|WP_019269299.1|362803_363352_+|DUF285-domain-containing-protein
MFENWVIIQDQIYNVDQTECLQIGYFLDKKTNKVQIIEFLSTTKKVPKVLPKEITSISFAFSGNKNEFIDGIQYWDTSNVTDMNHMFYWCADFNQDISSWNTSNVKNMQSMFSWASLFNQNISNWDTSNVLNMKNMFYTAEKFNQDLSTWDVSNVKREYQNIGFVNPNWNPEHRPKFNKVIS
>NZ_CP031288.1|WP_036428644.1|363405_364221_+|DUF285-domain-containing-protein
MFKKPIYNADKTECLEIGYFTNEAGEIQIEQFLPTTKKVPSVLPKQITSLAQAFKGNENESIDGIQYWNTSKVTNMSSMFLHAYSFNQPIGSWNTSNVKDMSYMFDGATSFNQDISSWNTSNVTDMSYMFFYAKEFNQNLNSWNTSNVTDMSSMFFGAKNFNQPIGNWDTSKVTNMCGMFCEAKNFNQPIGNWDTSNVTNMEYMFYEAKNFNQPIGNWDVSNVTNMAGMFFGATSFNQDISNWNVFNVKNSTNFSNTNPNWKSEHQPKFTK
>NZ_CP031288.1|WP_036428647.1|364275_365079_+|AAA-family-ATPase
MKIIEEIVGQEKILNKLEIIIKEHKQNKTPFSFILIIGKKGMGKCKISKWIHSHFDSNAIGVMNALFFNKNSLPFLSNFSYQQIDHTSCLFKPENVGKKSQKFLDFIFKRDLDNINKTLIKVDKLNKNSTYQYNAELLPITLEQLNNFRFICLTKSKNDLSKKLLNKFDYIFEIEPYTYKQIKLILHKDLMHTNNYFTNNTIKHIIYHSKLNPEIAKLLLKFADMKLDNDELVSKTDLKELFNKFNIYNLTNDQILDLCFKHDCMVY
>NZ_CP031288.1|WP_019269302.1|365079_365748_+|DNA-methyltransferase
MKNIKPVISYFGSKYRMLKNIFSILNLNSSDIFLDLFGGSGIVGVNAKHLFNCQTIINDYDNVLPLNLTYALKNILSFEGNLKNYTKKRLDYFIKRLDNGWIEKLNQYNQILQTINITHFDYKQILKNIINNKNKVTKLYADPPYVNKTGMYKNSFTIQDHIDLYNLLSELKVKTKIVISYNDEPFIKKLYKDWNIISIDKTNVCGINKNSSKVKELLITNI
>NZ_CP031288.1|WP_019269303.1|366237_366708_+|BspA-family-leucine-rich-repeat-surface-protein
MFKQAVYNADLTECLEIGYFENWKGEIQIEQFLPTTKKVPKVLPKEITSLELAFHRNENAYIDGVEYWNTKNITDMNYMFFEAENFNQDISTWDASNVIDMTEMFAGASKFNQDLSKWDTSNVNVFGQNIGASNPNWKPEHRPKFNKTIGKFNCLK
>NZ_CP031288.1|WP_019269304.1|366919_367297_+|hypothetical-protein
MKQLFKSIWKEIKFLHEPDFTISSKSEKWMHFLKILLFYTITFLIVSFVIGFWVWLGSYFANKLMPFETITKTILITITSLFTLSLIIGSIAVIIPFKFKKKKTNIKVNKSNLSTSEHNTYLNEK
>NZ_CP031288.1|WP_019269305.1|367375_367921_+|hypothetical-protein
MINSNIQSLINIQIQNVFQNHNLTEEQEQIIENYKYIMLNPLEATDFVNQITNYFVDLDFYNWILDDMLLVDLWQIKNEIIEFATDKNIDISWIRDDLKWWEDTDDSNLFFAYPNLGSIINYISPDRYDSKDMSYFELIYYLEPFKNATVVDIYELIEQYKYKVLPYDLYTLVQNYQQNKY

Crispr_ID: NZ_CP031288_3

• CRISPR_ID: NZ_CP031288_3
• CRISPR_location: 747606-747746
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP031288_3

Consensus_repeat	Method
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	CRISPRCasFinder

spacers of NZ_CP031288_3

>3.1|747652|49|NZ_CP031288|CRISPRCasFinder
AGTGATATAAAATAACAGAGTTTTTAAGCTATTTTACCAGTTTTTTACC

CRISPR arrays and Neighbor proteins around NZ_CP031288_3

CRISPR arrays

The CRISPR arrays of NZ_CP031288_3

>merge|NZ_CP031288|3|747606-747746|CRISPRCasFinder
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAAAGTGATATAAAATAACAGAGTTTTTAAGCTATTTTACCAGTTTTTTACCGGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA

>NZ_CP031288|3|2|747606-747746|CRISPRCasFinder
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	AGTGATATAAAATAACAGAGTTTTTAAGCTATTTTACCAGTTTTTTACC
GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031288.1|WP_052007430.1|742371_742836_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269588.1|753505_754459_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_045076196.1|749803_751258_+|DUF285-domain-containing-protein	unknown	unknown	gnl|CDD|308794
NZ_CP031288.1|WP_080713887.1|741039_741573_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|350692
NZ_CP031288.1|WP_036428011.1|751592_753434_+|ribonuclease-J	unknown	unknown	gnl|CDD|223668
NZ_CP031288.1|WP_080927309.1|729161_730454_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|350691
NZ_CP031288.1|WP_019269598.1|767084_767909_-|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl|CDD|234899
NZ_CP031288.1|WP_080927311.1|761842_762268_+|lipoprotein	unknown	unknown	gnl|CDD|237177
NZ_CP031288.1|WP_036428027.1|736604_737546_+|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl|CDD|238570
NZ_CP031288.1|WP_036427997.1|764797_765733_-|ATP-binding-protein	unknown	unknown	gnl|CDD|236353
NZ_CP031288.1|WP_052007432.1|740126_741074_-|ATP-binding-domain-containing-protein	unknown	unknown	gnl|CDD|223581
NZ_CP031288.1|WP_036428024.1|737626_739060_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269591.1|760530_761196_+|LemA-family-protein	unknown	unknown	gnl|CDD|224618
NZ_CP031288.1|WP_036428000.1|762345_763560_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP031288.1|WP_019269597.1|765742_766927_-|chromosome-replication-initiation/membrane-attachment-protein	unknown	unknown	gnl|CDD|226138
NZ_CP031288.1|WP_019269583.1|746129_747542_-|hypothetical-protein	unknown	unknown	gnl|CDD|225420
NZ_CP031288.1|WP_036428030.1|732912_733758_-|class-II-fructose-bisphosphate-aldolase-family-protein	unknown	unknown	gnl|CDD|238477
NZ_CP031288.1|WP_052658304.1|741583_742153_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_142796147.1|763688_764705_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|273675
NZ_CP031288.1|WP_019269574.1|733961_734696_+|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl|CDD|224268

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP031288.1|WP_036427997.1|764797_765733_-|ATP-binding-protein	gnl|CDD|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.99228e-37
NZ_CP031288.1|WP_045076196.1|749803_751258_+|DUF285-domain-containing-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.96031e-44
NZ_CP031288.1|WP_080713887.1|741039_741573_-|AAA-family-ATPase	gnl|CDD|350692	cd17934, DEXXQc_Upf1-like, DEXXQ-box helicase domain of Upf1-like helicase. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	0.000106677
NZ_CP031288.1|WP_142796147.1|763688_764705_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	1.69666e-158
NZ_CP031288.1|WP_080927309.1|729161_730454_-|AAA-family-ATPase	gnl|CDD|350691	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins. RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.04534e-21
NZ_CP031288.1|WP_019269574.1|733961_734696_+|DeoR/GlpR-transcriptional-regulator	gnl|CDD|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	7.76295e-61
NZ_CP031288.1|WP_036428011.1|751592_753434_+|ribonuclease-J	gnl|CDD|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP031288.1|WP_052007432.1|740126_741074_-|ATP-binding-domain-containing-protein	gnl|CDD|223581	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair].	7.87557e-22
NZ_CP031288.1|WP_080927311.1|761842_762268_+|lipoprotein	gnl|CDD|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	3.31415e-06
NZ_CP031288.1|WP_036428000.1|762345_763560_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP031288.1|WP_019269597.1|765742_766927_-|chromosome-replication-initiation/membrane-attachment-protein	gnl|CDD|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	1.40846e-29
NZ_CP031288.1|WP_036428027.1|736604_737546_+|1-phosphofructokinase-family-hexose-kinase	gnl|CDD|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.09362e-89
NZ_CP031288.1|WP_036428030.1|732912_733758_-|class-II-fructose-bisphosphate-aldolase-family-protein	gnl|CDD|238477	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.	7.10441e-136
NZ_CP031288.1|WP_019269598.1|767084_767909_-|DNA-formamidopyrimidine-glycosylase	gnl|CDD|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.01543e-94
NZ_CP031288.1|WP_019269583.1|746129_747542_-|hypothetical-protein	gnl|CDD|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.31319e-64
NZ_CP031288.1|WP_019269591.1|760530_761196_+|LemA-family-protein	gnl|CDD|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.36513e-35

Protein sequences

>NZ_CP031288.1|WP_019269583.1|746129_747542_-|hypothetical-protein
MDFNYSGETTTVEYKVTFDSKNPDNFLHTVSAFANTKGGKIFVGINDNNQIVGLKDPQTILENISEAIKTKIDPNPEFYCEIEEHNGLKFIVVSILKGEQTPYRYLTKKADAAYIRSGNQSIKASTNQLRNLMFRGTKESFDTLKTKIHWKQASFKSLNLELNKIGQQVNTVQQLTSLGLVKDEFLTYAGALIADNEFIKFSKIYTTRWNGNDKTNSDIVSLKTKEYKGSLIDIFLKTEQFIDDYNSIMWKKTDTKRIDYVDYPFLAVREALVNALIHRDYSINGSQIDVDIYDNRIEITSPGGMFDGTNIQEAPTWAVVSRRRNEVIADIFWRINYMEKRGSGLGKIIELYASQPNYTNDLKPIFMSNEHLFKVILWNLNYKKDNLFKSDKRNLFENNIDIKVVDSIDKSQDEIVRNYIKSVSSFTRKDIEKIANIKRTRANQIINSLLEENKIIKVNGGRSTEYKVKG
>NZ_CP031288.1|WP_052007430.1|742371_742836_-|hypothetical-protein
MINNVDDNLRRLDKIFCSIFDKINDTSIDELASEIVCSDLRNFVECIILKIYNVENKENYTVEYEFIQKAKKYVFLKSEFSEIKKIYNMLQSTVSHYKLEEDNAKRLMFRYYKYLTFIRTKMQKYGLNLLENLEKYPIYLNSQEKNIMKRYLRK
>NZ_CP031288.1|WP_052658304.1|741583_742153_-|hypothetical-protein
MGNKISILIIDSFEIKIRECEFVNFCKIFNGPNTQVSKNELKLINECLNENKINLLDLITYYEKDISQLRENVVYRTKKKSTLFLDVLEKSKKIVDECKSGSNVIKYLLFNMKNIIIKRQKADVKNSNLSDLFLENSCIPFDNSPFVFSLPNHNPSMYDLLEIFNIDDRQEENLARQIKEDTESNFKLF
>NZ_CP031288.1|WP_080713887.1|741039_741573_-|AAA-family-ATPase
MLIIQVKLKKIILSYNQKLWFGHRPDNEINYLYIHKYANNLDFIIEKLKTYTKKGYQGYSNLSDKWLNKNNISSEEKKIIIQKIFRDTQVAFIYGSAGSGKTTLINYMSQIFNDKSKIFLSHTNSSVNNLKKRIDSLNSKFMTITKYINTKGLECDILFVDEYGVVNDSDMKKSSWK
>NZ_CP031288.1|WP_052007432.1|740126_741074_-|ATP-binding-domain-containing-protein
MTVIWKKVLENNNSELLVLVGDIFQIESIGFGRWFNYSKEVMPKKAINELKEQYRTDNRSLQKLWKCARENKENIIDSLNRYGISKTLSDSIFKRKYDDEIILCINYDGFYGINNINRILQESNQNPVFYWGTQKFKKGDPIIFHTPEAIGKGIYNNMKGKILNIDIDDNKKYIEFHIELEKKINISDIDINKCQLLDKDDCESSSISFKVYKKQNTDLDEDDLTTIIPFQISYAISIHKSQGLEYDSVKIIFSNILENKINHNIFYTAITRAKKDLIIYWSEELEEKFIKSIELESDNKDISILKNMFPSFGKK
>NZ_CP031288.1|WP_036428024.1|737626_739060_-|hypothetical-protein
MGIVELSNISLFNDYLKLKFALIFIFNLCWIIPVLWSSINLIKNSKIKILEFNIKGIKGKFNEIDQKDETIFDKEIKQIIYLLYSSNTDYVVFDDLDRYKSIEIFEKLKQLNYLLNNYYKTKNKDKVVKFIYMVSDDLFDNESRTKFFDFIITIIPIKTSKTFVRKWLEAIDIDIDSEYIENILNIITNTRIFLNAINDYLIYKKLVMRRFQLKNSDKLNLFNIVLVKNLLPDEFQHLQNNRGIIYELLTKDKEDYCKWAIDSLKLKIKEIDELIMQTSYLFSGIGYKHEFIVRELTNILSINDDLDSEEINLGLSREQVKKTPFEEKDQTKVRVLTRMYENRKMKARVKYAASGGIGYGILEQEFTYSEFFEKFVTNKLKIRLATVRRNGYKEIDKLKSIKKDLVDSLYFCKELSINKLLKIIDWDNSNNQLAQKWFEELKRKDKTKNINNFFLIKSIFNLNLINEDYKKYINYID
>NZ_CP031288.1|WP_036428027.1|736604_737546_+|1-phosphofructokinase-family-hexose-kinase
MHNKIYIVSLSPSIDYILKFDNFLKNKTNRPKSQYMYAAGKAIHIPMLLNRLNIDNELLVFTNGSFETFFYNDLKKEQIRYKKFKSNGDIRINLKIIDNEQTESSSYAPEININELNKLKKYLNNILQKDDVLILTGSLPINTDTNIYAELVELANLKRAYSVVDTFKEPLLKVVEQQPFLIKPNKDELEATFNMKLKNDSDIINQSRVLLQKGCKNVLVSLGSDGAILVTGTKIYKASLPKWNYKVDNVAGAGDSMIAGFISKHLQTNDYIKALKFSLICGSATAFSYKIASKEFIDELSTYLDKIEVKEIN
>NZ_CP031288.1|WP_019269574.1|733961_734696_+|DeoR/GlpR-transcriptional-regulator
MLKDQRRQKILEIVNEKDFVTNKQLAKLLSSTIQTIISDISELDKEKKLYKVYGGAKSANSLAKRYELFDEEKQHINIDIKDLIAQKASEYVSNGDLIFLDTGTTTKQMIKYLINKKIIVVTNGYSIALELVEQDIEVILLGGSINPSTHATIGELALKNLDNFYFDKVFIGMNNLSSQHFYTTNIKEALIKEKAIKNSDKSFILMDSSKFGSKNVIKVDVLKETILISDKDTDEYKGLIINLE
>NZ_CP031288.1|WP_036428030.1|732912_733758_-|class-II-fructose-bisphosphate-aldolase-family-protein
MKASLKDQLLKARQNHYAIGAFNFDNLEMLKAIVEAAEESNSPIIAMITESAAKYIGKEIVIASANAIISNTKVPIVLHWDHGYDLNLIKWACDNEFSSVMLDASLDDFNTNVNKTLEIVNYAKSKNVEVESEIGHVGGKEDDIDSNINKYTSVDEAIKFVNLTQIDALAIAVGTSHGIFKTAPNLNFDRIKEIRDSINTPLVLHGSSGLSDTDLKKAINSGICKINIGTDLKLVYANSLKQWFKENPISYDARKFGRFAIDQMKKVIKQKLEILGSINKA
>NZ_CP031288.1|WP_080927309.1|729161_730454_-|AAA-family-ATPase
MLKTLGYIKKFTYIKDNKWAVAEFLVLNDNKLIKISGFINDMVIGVLYQITLELIPISRNNQNIFNCTYYKVQDMNEKIFIDYLNSDLFNKYIDNNLANIITTNYTCDYIKEILFDKDQFLKIDLNLKSNLKNIYKKLSNIYKFTILESEFTENNLDLLLLKSLKELDKQHNHSFEELLNILINRILDFNYLHNIVDFEIADKIFLHFNKDRYSVIRIAYYLHYFCSKILKSKSSTYTSMQSIKAFLIENKMLPFLEQHSSEELINNSINYAIKNKLFIIKKEKVYTYQTYTDELNIAWYLTGKKKVKKLNHFKFKKYVNQIEQEVKKETNISNFKYDKSQVNALKKFINNRFIVITGGHGTGKITLIKGLVKLFKKVYPNSNFRIATPTGRAAARIKESFEESNATTIHKLLQYDVETRKFKKKIKIIH
>NZ_CP031288.1|WP_045076196.1|749803_751258_+|DUF285-domain-containing-protein
MAKKKKNIKITSKNKEQNQNKKKKKKYLIVLAGLLLGTSLITGTAIGISKNKRKVVRKDDKNKKETVINLEDAIKINSRFLPIFYTENKNDVLKHINNKINKLKTYKKTIILSEDDVDLVFFKNTNSIKVIAKPDHKKYKGQVELRFQKTNVDQFLNSKDKFLGKFDSVNEDQIIKKIIELNKYNLQDIDFNTHFEIEIKNNIVTIKAKPDSYFYKGQITGYKFKIRTKIKDLIDTKNINNFEFDLQPDNKKIIDLIKNKNPELEDFDFENNFEIKIDDQKITIKPISDDYSDKLEIDFKVKPEPQSDQNEVYNKDDETELKEIGYFKNKYGQWQIKPIPKNVKKVPEVLPGFITNLKGAFAKNENSHISGLEKWDTSNVTNMIDMFKDAKNFNQDISSLDTSRVVDMGRMFSGASSFNQDISSWDVSRVTDMNSMFNGAKAFNQDLSEWNVNRVSYIKNFNTDSHPDFNNKKIPKKFVYLLNN
>NZ_CP031288.1|WP_036428011.1|751592_753434_+|ribonuclease-J
MSNKDNKKNLEINDTENENQINSYDDDGDQLNISIDEKEFKPYVFKQKEVKRQYQKTNIPTKIFALGGLEEVGKNTYCIEYDNELIMIDAGVKFPESTMLGVSAVIPDYSYLVENQKKIKALFITHGHEDHIGGIQYLVQQVKIPVIYTPKLAAMLIRDRLKEYKIEDKTIVKEYDADDVWKTKNFKVSYAALNHSIPDAFGILVQTPNGNIFSTGDYKFDWSPLGHFAELTKLASMGENGVELLMADSTNSEVEGYTQGEKSIISNIDKLFLQAKGRIFLTTFASNVHRIQHIIETAHKYNRKIVILGRSFERIIKIIRQIGHLKISEKEFIKSTDIDKYKPEELMILTTGGQGEPMAALSRIANNKHLSINIIPGDTVVFSSSPIPGNRADVEKLVNKLTRVGAKVIENTSDNKIHTSGHASQEEQKLLFSLIRPKYFMPMHGEYRMLKKHVETGESVNLEKGNGFIMANGDVLELLQGKAKIGKRVEADAVYVDGKDMTGKASNVIREREILSKDGLIAVVISLDSQTNRLIAQPRIISRGSFYVKDAGSIISDSIQIITNAVNEVLMSSKPTFAAIKKAIKSSLSPYIFRVKRRNPLIIPVILNKKLNR
>NZ_CP031288.1|WP_019269588.1|753505_754459_+|hypothetical-protein
MKNNNSSFFSSPRTQIKFFQWVGTIFAVIGMLISLYFLSKIDVKALDQSKQVLLALGYAIMGYMFWKTIISAVIILRFVKKSTDEELVANRYILASLSLNLGGFLTPWVLTSLPNVTTQSTIKPKWFLSRSFAIITTIGSAIFLGVLFWQLKTISPNTNWFDQSKEWYWILVGFIIGNGVLLVVGLLAFILFFNKNSKERFEGNTFTSFLMKTIAVFYLVIVTIELIVLMIYSILRLIGNIINTAARVLQADNALIGVLYFLFGLLTMFFQIYYVIFLTMMISQTIKGIWRKDGVITIKVYDKLKEKEDKYQLKHNR
>NZ_CP031288.1|WP_019269591.1|760530_761196_+|LemA-family-protein
MANTLDEMNDPILDKGRQVNVINKRILITVGKGSLVFEIILWILGIIPGIIFTFIKIKAKNYLAQLEQKLQHNASQIDNYLEQRVVVMQNLASLLSKSIDLDKDVMKTIAAYRSGINLNDENRTNISTQLDKTIKGLSLQVENYPDLKSHDSIKQALQQNLYLQKEITAARDIYNDTVFQWNRSINEWPAKMIVAAKMQYTTRIPFITTTEIKRQANQDFF
>NZ_CP031288.1|WP_080927311.1|761842_762268_+|lipoprotein
MKKLLTLLGSVGLIASTSTAVVACGDRSNTEMNHQIWQKKIKIKKKKNQEQIQDQKQLQNQEQIQDQKQLQNQEQIQDQKQLQNQEQIQDQKQLQNQEQIQDQKQLQNQEQIQDQKQLQNQEQIQDQKQLQNQEQIQDQDK
>NZ_CP031288.1|WP_036428000.1|762345_763560_-|phosphoglycerate-kinase
MNYNNKKTLKDIDVKNKTVLVRVDFNVPIQNGVITDDNRIIAALLTINYLIENDAKIVLFSHLSRIKTNEDKLKKSLAPVAKRLEELLNKKVKFISQTRGKELEQAVSLLQTKEIILVENTRFEDVWDNQVVKYESKNDPELGKYWASLGEVFVNDAFGTAHRSHASNVGIASNIKVSAIGFLVEKELKMLSQAVNDSKKPFIAILGGAKVSDKIGVIENLLPKVDKLLIGGGMSYTFLKAQGRSIGKSLLEEDKIDLAKHYLEVGKDKIVLPVDTACAKEFADVKPTIFETNIPDEWDGLDAGPKTIEMYKEEIKKAKTIVWNGPVGVFEFKNFETGTKFICQAIAEQTKTGAFTLIGGGDSVSAAINMGFKDNFSWISTGGGASLEFMEGKELQGISAIQDK
>NZ_CP031288.1|WP_142796147.1|763688_764705_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MSKKVAINGFGRIGRLTFRRLFEKGVDIVAINNLTDTKTLAYLLEFDTAQGIFCEDEISYTDNSIIVKGKEVKVFAEKDAANLPWSDLKIDLVVESTGFYTDKEKASAHIKAGAKKVIISAPATGDLKTIVYGVNHKSLISDDVIISGASCTTNCLTPFTKALDDAFTIKKGFMTTVHAVTNDQRLLDLNHKDLRRGRAAAWNIIPSTTGAAKAVSLVLPHLKGKLDGYALRVPAITGSITDLTVEFETQNLTIDQINNAVKKALQEDSDLAQAMKYETKPIVSSDVIGSKYGSIFDATLTKVMNVDGKQLVKVCSWYDNESSYVSQLVRTTIYFMSL
>NZ_CP031288.1|WP_036427997.1|764797_765733_-|ATP-binding-protein
MKLDDYKNNPKIKKIISDSLNSNDVITDQVLLDNKNILDEFLFNYKECSLDEKCSQIIKNYQVDLVFKDHLFYLKNVLCIHSKQTEKLFIIKKNYWFSDFDLNLFSLTYDEYFKNELNNSEFSLLDQKEKDIRKKLLSNILKFVQKNSKKGVYLYGHSGIGKTYMFKVLANTLASKNKTVIFSTLRSLIDKLKESFNSSEINSLELMKKIKTVDFLFLDDIGGENLSLWARDDFLFEVLNYRMENQKATFFTSNFSINLLEKNLQFTRQYNNFLNSKDVFELEKIKIKRLISRIKTLSKELFFLGSNKRKN
>NZ_CP031288.1|WP_019269597.1|765742_766927_-|chromosome-replication-initiation/membrane-attachment-protein
MLSRDFSYSVSSNFELSQEQYKSLTCLYQPLISTQAISLYLTLIQEVKISNILKEEALESKRLLNITNFSFKELSKAFDLLNAFKLIKVYVKKSDYSLIKFEILEPLKSNEFFNHKYLNNLLLNKLQANDYEITRFMLVNETQINTNQYQEIVVDLTDVYDQSLICDFSCSDFEVKKTPNYLKKLNQFLNLDYLITSLKNKNISLDFLDQNTLKSLYELLTIKKLTEDQIVSLIINSYNSYNKNIDLNLFKNLLIDLITKKHTNNTNLELIELINKTNWFEYSKQKYDIDLSKYTTVFENIKHQYCLSNGIINCLIDFSYKKNNGQIIVKYIAKIAKTLFDKNINTTLKVMQFLKNIQNKTTTHDYETIFKSDDFNLQAEPIFEFNEEELKCLV
>NZ_CP031288.1|WP_019269598.1|767084_767909_-|DNA-formamidopyrimidine-glycosylase
MPELPEVVTVTNTIKPSLINKTIIKSEFFSNKIVSSTSVEQFINLTKEQKILDIYNLAKYIVFELKEYVIISHLRMTGKWVIENSDQYAYKKSWLKAEFLLDNNLVARFYDMRGFGTLNLYNKSTFLKDSHLDKLGPIPLNNQTSVDYLFNKLQKSNKAIKTVLLDQHVISGLGNIYVNEVLFLSKINPLTNANLITKDQTKEIIKNCENVLSQAILLKGTTISDFESLPGVTGSYQTKLFVHLNNKNCKLCNTKISKIKVNGRGTYYCSSCQK

Crispr_ID: NZ_CP031288_4

• CRISPR_ID: NZ_CP031288_4
• CRISPR_location: 896433-896607
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP031288_4

Consensus_repeat	Method
AATCAAGATTTATCAAAATGAGAT	CRISPRCasFinder

spacers of NZ_CP031288_4

>4.1|896457|51|NZ_CP031288|CRISPRCasFinder
ACTTCTAACTTAGAATAAATAGATGGAATGTTTAAAGGAGCACACAAGTTC
>4.2|896532|51|NZ_CP031288|CRISPRCasFinder
GTTTCAAATGTTAGAATATTTGATTATGCATTTTATGGAACAAAAGCATTT

CRISPR arrays and Neighbor proteins around NZ_CP031288_4

CRISPR arrays

The CRISPR arrays of NZ_CP031288_4

>merge|NZ_CP031288|4|896433-896607|CRISPRCasFinder
AATCAAGATTTATCAAAATGAGATACTTCTAACTTAGAATAAATAGATGGAATGTTTAAAGGAGCACACAAGTTCAATCAAAATTTATCAAAATGAGATGTTTCAAATGTTAGAATATTTGATTATGCATTTTATGGAACAAAAGCATTTGATCAAGATTTAAGTGATTGAGATG

>NZ_CP031288|4|3|896433-896607|CRISPRCasFinder
AATCAAGATTTATCAAAATGAGAT	ACTTCTAACTTAGAATAAATAGATGGAATGTTTAAAGGAGCACACAAGTTC
AATCAAAATTTATCAAAATGAGAT	GTTTCAAATGTTAGAATATTTGATTATGCATTTTATGGAACAAAAGCATTT
GATCAAGATTTAAGTGATTGAGATG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031288.1|WP_036427856.1|888157_888892_-|DUF285-domain-containing-protein	unknown	unknown	gnl|CDD|308794
NZ_CP031288.1|WP_036427848.1|880799_882113_+|thymidine-phosphorylase	unknown	unknown	gnl|CDD|274244
NZ_CP031288.1|WP_036427828.1|897263_898733_-|hypothetical-protein	unknown	unknown	gnl|CDD|274765
NZ_CP031288.1|WP_036427842.1|892971_894270_-|adenylosuccinate-synthase	unknown	unknown	gnl|CDD|234904
NZ_CP031288.1|WP_036427839.1|894554_895355_-|TatD-family-hydrolase	unknown	unknown	gnl|CDD|238635
NZ_CP031288.1|WP_036427819.1|910161_911592_+|diacylglyceryl-transferase	unknown	unknown	gnl|CDD|376615
NZ_CP031288.1|WP_142796154.1|891680_892988_-|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|176464
NZ_CP031288.1|WP_142796155.1|898735_899695_-|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl|CDD|224383
NZ_CP031288.1|WP_019269687.1|911603_912533_+|DNA-binding-protein-WhiA	unknown	unknown	gnl|CDD|224398
NZ_CP031288.1|WP_142796153.1|883770_884307_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269681.1|901977_904818_+|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl|CDD|234734
NZ_CP031288.1|WP_036427822.1|907656_909237_+|diacylglyceryl-transferase	unknown	unknown	gnl|CDD|223754
NZ_CP031288.1|WP_142796156.1|899953_901969_+|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl|CDD|235395
NZ_CP031288.1|WP_019269685.1|909220_910153_+|thioredoxin-disulfide-reductase	unknown	unknown	gnl|CDD|273540
NZ_CP031288.1|WP_029333391.1|884974_886378_+|magnesium-transporter	unknown	unknown	gnl|CDD|225148
NZ_CP031288.1|WP_045076262.1|891106_891658_-|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl|CDD|223707
NZ_CP031288.1|WP_142796170.1|882155_882440_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_036427858.1|886379_887042_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl|CDD|234649
NZ_CP031288.1|WP_019269683.1|905947_906622_+|folate-family-ECF-transporter-S-component	unknown	unknown	gnl|CDD|275311
NZ_CP031288.1|WP_019269682.1|904810_905920_+|dihydrofolate-synthase	unknown	unknown	gnl|CDD|223362

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP031288.1|WP_036427856.1|888157_888892_-|DUF285-domain-containing-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	7.58124e-53
NZ_CP031288.1|WP_142796154.1|891680_892988_-|adenylosuccinate-lyase	gnl|CDD|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
NZ_CP031288.1|WP_036427842.1|892971_894270_-|adenylosuccinate-synthase	gnl|CDD|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP031288.1|WP_036427839.1|894554_895355_-|TatD-family-hydrolase	gnl|CDD|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.08645e-97
NZ_CP031288.1|WP_036427819.1|910161_911592_+|diacylglyceryl-transferase	gnl|CDD|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	1.69938e-22
NZ_CP031288.1|WP_036427828.1|897263_898733_-|hypothetical-protein	gnl|CDD|274765	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	0.00297957
NZ_CP031288.1|WP_142796155.1|898735_899695_-|DNA-polymerase-III-subunit-delta	gnl|CDD|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	6.00403e-22
NZ_CP031288.1|WP_019269687.1|911603_912533_+|DNA-binding-protein-WhiA	gnl|CDD|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	6.16137e-53
NZ_CP031288.1|WP_036427848.1|880799_882113_+|thymidine-phosphorylase	gnl|CDD|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP031288.1|WP_019269681.1|901977_904818_+|excinuclease-ABC-subunit-UvrA	gnl|CDD|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP031288.1|WP_036427822.1|907656_909237_+|diacylglyceryl-transferase	gnl|CDD|223754	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane].	1.47647e-23
NZ_CP031288.1|WP_142796156.1|899953_901969_+|excinuclease-ABC-subunit-UvrB	gnl|CDD|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP031288.1|WP_019269685.1|909220_910153_+|thioredoxin-disulfide-reductase	gnl|CDD|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	3.60077e-126
NZ_CP031288.1|WP_029333391.1|884974_886378_+|magnesium-transporter	gnl|CDD|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	6.55263e-79
NZ_CP031288.1|WP_045076262.1|891106_891658_-|hypoxanthine-phosphoribosyltransferase	gnl|CDD|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	1.1132e-65
NZ_CP031288.1|WP_036427858.1|886379_887042_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl|CDD|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.58008e-56
NZ_CP031288.1|WP_019269683.1|905947_906622_+|folate-family-ECF-transporter-S-component	gnl|CDD|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	8.93282e-35
NZ_CP031288.1|WP_019269682.1|904810_905920_+|dihydrofolate-synthase	gnl|CDD|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	9.32674e-66

Protein sequences

>NZ_CP031288.1|WP_036427839.1|894554_895355_-|TatD-family-hydrolase
MIDDNKIFDNHIHFNDDLKYKDANIEQLIKEAQKEHVTAWLCSSFDLTSSKKAIEFSEQFENVFASIAIHPNEVQNFNDSVFDELEQLITNKKVVCIGETGLDYFYSKEDIKKQKEFFKKHIELAIKYNKVLQMHIRDQKDQFQAYDDVIEIIKDLNQVIKVVHCFSANDVYAQKFLDLDCYINIGGAVTFKNAKDLQKAVKIIPLKKMLLETDAPYLAPDPYRGQVNHPKYIYLTALKIAELKNIDVKEVIRITTQNSKKIFNLN
>NZ_CP031288.1|WP_036427842.1|892971_894270_-|adenylosuccinate-synthase
MKNNYKSLVIVGSQWGDEGKGKITDYFSQKADAVVRFAGGDNAGHMIEFNNKRHKVTIIPSGVFNPKVKNIIGNGTVINLKSLVNEIKRLNESNISTDNVYISDRAHLIFDWHTLIDQLQEENRKENKIGTTKRGIGPSYADKAARYGIRICDLKSPNFKEIFKENLDYHNEIITKVYNHKPLDFDQVYNELLTNYQLIKNNIIDSGYEVSNLINENKFVLFEGAQGVLLDIDHGTYPFVTSSNCSANNASIGTGIHAKQIQKVIGIVKAYNTRVGSGAMPTEIKTELANKLRERGREYGSNTGKPRRIGWLDLVALKYAIRVGGIDQLFLTLFDVLDTEEKIKICTAYKLDNQIIHTIPANENDFKRCEPIYEELDGWNEDITKITSFEQLPINAQNYIKRIQEIVNVPFLGFSVGPDRKQTILIKGEFDD
>NZ_CP031288.1|WP_142796154.1|891680_892988_-|adenylosuccinate-lyase
MNLMISRYQIKEINQIWSDENKYNTWLKVEQLVCQAWAKLGYINKQDILKINNNLKVDLNRMLEIEQETKHDVVAFTRMLSEQLDSESKWIHLGITSTDIVDTAQNYLIKQSNQIVDNELKNISDTLKKLAFEHKNTLIMGRTHGMYGEPTSLGLKFALWFDEFQRHIKRFSLAKSDIQVVKISGSMGNYANLEPIIEEYVANKLDMNVDSLSTQVCQRDRHIFLVEVLANIASTLEKISTEIRLLQRSDVNELAEGFFKNQKGSSSMPHKKNPISSENVAGLSRYIKSIVNIVLENNNLWHERDISHSSNERIYLPDIFNLIIYILKRMNETLTNLVINQSQMLNHIKQAKNIYFSQRVLTFILLNYKNVTREKIYDLIQQITFKCFKDQSDFKDEVLKSSLTEYVSIQQLEELFDDQFFLRHIDYIFNRVFNN
>NZ_CP031288.1|WP_045076262.1|891106_891658_-|hypoxanthine-phosphoribosyltransferase
MYDLKNVKKVLFTKEQINERIKQVAKEVKKYYLEQPPVNGPLITIGLLKGCVIFNTEFVLNFDYPIQMDFMAVSSYSGMQSTGAIKIKLDTSLDLTNRDVLIIEDMVDTGLTLSKVKEHIIYKGANSVKVVTLVDKKDFHTVDFTPDWNCFDIDDYYIVGYGFDCNEDYRNLPYIGLYQPDNN
>NZ_CP031288.1|WP_036427856.1|888157_888892_-|DUF285-domain-containing-protein
MSTLSCITIAGVVGGAVNYKIVNKVDKSKPPVLVKQLKKAVYNDDKTECLEIGYFKNSHGEIQIETFPKTVNKVPKNLPKQISSLSLAFHLNLNSQITNLDKWDTSNITNMSVMFAGAEKFNQDISKWNTSNVTNISGMFIWSNSFNQDLSSWDVSNVTNMHSMFYGANSFNQNLSSWDVSRVINMNGMFYGAKSFNQDLSNWDTRNLSKNVHTKNGITYTGWTNFNKDAHPDFKDNKLPRFPK
>NZ_CP031288.1|WP_036427858.1|886379_887042_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRKKAWTEQFLNQHTSYLIKYGKKINLNEIFLNNNLTCLEIGCGKGQFLTTLALKNPNLNYIGMEKSSTITAIGLKKSLKEFQNNSKKMTNINYLNKYAENLLEIFYTDSFSRIYLNFSDPWPKARHYKKRLTYLGFLDIYSDILIKNGFLEFKTDNDSLYNFTLEQLKLTNKWETISNTLDLYNDQELLKDNVPTEYETKFHLANKNIYKIVIKNLK
>NZ_CP031288.1|WP_029333391.1|884974_886378_+|magnesium-transporter
MVDLENKEQEILEFYNNKEFDKCIEIIKKLRYADVGEILNYLDEKIAFNLYKKLEINKASQIFNYLSFDLKEYILTNLNQTKIKQLINDLYTDDIINAVESMPVEVVKRVFNAASKEQKKEIASILKYDIDTAGSIMSVNFLSVKQTTTVSKTIKEIQKNHDDYDEIDDVFVVNKLNQLVGSIEVKDLILNDMNTKIENIMNTKVISINSNQSQEDASNALKKYDISTLAVVDNNNVLVGIITSDDIIDVLIEETNEDMQKYTGIRTNETNYFDTSIFEMFISRIWSLVLMLGLTIITNSLLLIIFQKYNWTPAIKTKEELLFMLIPLSIILSTVIICCANQTLVMIRRAISLEQINKKSLKTIALKELVVSLMIAFVLIIVNLLKMILIYAIKYNANLTNINIWNSILISSAGIFISIIFANLLSLFLPLIVKKIGKDSSSVSLPLFALIIDILCVGVFLGIGLLV
>NZ_CP031288.1|WP_142796153.1|883770_884307_-|hypothetical-protein
MSKKYNKKQIILNSLSFSSLVVLPIFVTSCGLSFKNHNLTSKSKTWQIPTTNANKKPTIDSESNLNNFKNSEILNSLNFSSSTKTSLKKLDNFYPKQYIEEFKEKNLTKDKVQEIIFNHNIPSNYYSHPKFKLERKYITLDKENQVEKLKLLDSENNQEIQNVTWYQRLRFQTTNYYL
>NZ_CP031288.1|WP_142796170.1|882155_882440_-|hypothetical-protein
MQFRWKDSFDKFASDIQNVEITKANDVYNIVKLEKPNTIIGVDNTMEYRVINKNSQWESIISNKIDNLKSGTYKIRTKANNNSLASNSHQITIN
>NZ_CP031288.1|WP_036427848.1|880799_882113_+|thymidine-phosphorylase
MFTFTDIIEKKKHNIELTQEEISWLINSYTKNEITDYQMASFCMATYFTDMTARETAFLTKAYIESGDRYDLSKISGFKADKHSTGGVGDKTSLVYAPLVASYGIKVCKLSGRGLGKTGGTVDKLESFPGWKSEVTNDEFVDVINKANMSLIAQSDNIVPADKKIYALRDVTGTIDSMPLIVASIMSKKLIVENDGLILDVKTGNGAFMTTIEDAKDLANRMIEVGKQYNRKVAVVLTNMNKPLGRAIGNAIEVKEAWETLNGNGPKDFNELISTLVGITLLQAKIFTDLATAKQDVLKRLQSKQAAPYLKEFVTAQGGDWSVLENYDEVFKCKNKIEIKAVNSGFIRYKRAEEFGMILIELGAGRFKKTDTIDRAAGIYLDKQYGDYVNTGDVIMTLYTNREVNLKWKEMVHETYELLDKEPVKEVIWEIISDDVK
>NZ_CP031288.1|WP_036427828.1|897263_898733_-|hypothetical-protein
MKELYLKLLNLSLNILKTNKLKYFILKNEEFKLKYLNLINDILTLETNHNQSLDDKVFAKTFAKAFILITKPTTKQRFEVNDDITIEQIENNYKQLVSYIVKEFKVVKSKLVSENEQISDEIINQNAILTDQVISRIEARLSKQEQSKEQKTSENFSKTTTVVTETQTQQEVENKQAQTSQQTDFLNSFNPNMFSNLNNADLPVLPSQDPRFHSYKGKPKFMPYLKIALCVLAVISTILLVSSLLFLSYTTIDISSSNYANIIESNKNWSDLIKVGDKELLKAWPIGISQIVLMFKRAFGLPILIYMIPTILICTYTKKTFSNPREKYRIPLFPVIFFIMFFIGLTVNLYEFTSLEKFKEAWKLFLSGMTSKTDIDINKFFELVLKDHALKFQLGSALVISSLIVTILTLLLAIVLIFVNPKIDRQKIVKATLEHQKAVMAIMQGQKYEIDPSLYEEDEIEIKHPSKLKSFFLKLKNKKKKENNKDKNN
>NZ_CP031288.1|WP_142796155.1|898735_899695_-|DNA-polymerase-III-subunit-delta
MILMYFFYSEDIFLLNNQIKKTIKELQQKDQYDVLSFSLIEDDFNTIYDNVTNLNFFSSKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFGLNSNKFSKKLKIAKYIESNFNVKYLSLWDEKQTIKYIIDYLKSKNKIIDINLASQIYNLLPNDLQIITNEINKLANLKSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGLISLIDTNLSFYRDIVILKKQFKSEEQISTILKSHIYRVKLAVNNSYDINTLNDKIKIVYKIYKGIINWNINKKTLVEYMLIKNMKG
>NZ_CP031288.1|WP_142796156.1|899953_901969_+|excinuclease-ABC-subunit-UvrB
MLWENIMFIANNKYKLVTKYKPSGDQNQAIEKLNKGLIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIAHNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRLSACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRNDIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIHPAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCSGIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEYGFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVIQQIIRPTGLLDPQIEIRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLECSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVARNVNGKAIMYADTVSQAMDEAIKETNRRRRIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELENEKNTN
>NZ_CP031288.1|WP_019269681.1|901977_904818_+|excinuclease-ABC-subunit-UvrA
MSTDKIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLVFSTIYQEGRRRYIESLSAYARQFLGGNEKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARIGQPYCINNHGQIKAVSIKEIVENIKQSTSDGEQIHILSPVIRDKKGTHIDILEKLRNDGFIRVIVDDQLRMLDDQINLEKNQRHNIDIVVDRIIYHNNDEINSRIFTAVEMGLKYSNNLIKIAFPNSNKQEKLFSTSFSCKVCDFVVPELEPRLFSFNAPLGACELCNGLGVSLEPDINLILPDLKLSINQGGVVYYKNFMHTKNIEWQKFRILCDYYYIDLNTPLKDLTQKQRDIILWGSDREIDIKIVTENNNKYEKYDFIEGNAALIKRRYFESKSEEARKWYSKFMSSKICKQCKGSRLNDIALSVKINEKSIFDYTNMSISEQLDFLLNIDLTPTQAMIAKLVLDEIISRTNFLNEVGLGYLNLSRTATTLSGGESQRIRLAKQIGSQLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDAMKSSDWIVDIGPRAGEFGGEITFSGTYQDILKSDTITGRYLSRKEGIVVPKTRRGGNGKKIEIIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVYKGIHNNLSKEYLPIGKVKEIKGIENINKAIYISQEPIGKTPRSNPATYTSVFDDIRDLFTNLPEAKIRGYKKGRFSFNVHGGRCEHCQGDGVITISMQFMPSVEVVCEICDGKRYNDETLTVKYKNKSIADVLNMSVSEAYVFFENIPQIKQKLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKQTGNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGPDGGEYGGQVVVTGTPEQIIDHPTSYTAKYLKDYIVND
>NZ_CP031288.1|WP_019269682.1|904810_905920_+|dihydrofolate-synthase
MISIDQELFPIIQRLNREVVFDKVLDELNHPEKFLKVINVVGTNGKGSTSFYLSKGLLKKYQKVGLFISPAFLYQNERIQINNTPISDNDLKSYLHKIDYLIKKYQLHFFEIWTLIMILYFKDQKVDIVVCEAGIGGIRDTTSFLTNQLFSLCSSISYDHMDMLGNSIDEIIYNKVNIAKPNTKLFISHDNLKYKKIINKQIINKNVELIYTDLYEDKIIYQKANKGLVKKVLEELGIFDLDIFELEPPLGRFTTLQTFPNQIIIDGAHNVDGIKKLIQSVKSLNKEFIVLYASITTKEYLKSLELLDKNFKEVYICEFDYIKSWSIEHINHKNKIKDWKIFLKNNSKNIIICGSLYFIPLVYTFLKNN
>NZ_CP031288.1|WP_019269683.1|905947_906622_+|folate-family-ECF-transporter-S-component
MEFNSLSVYWITTAIFAVLLISMWVLGLWMEGFKLKTFTIKNITIIGTLVALSVILSYVVNRNFLQILGTRITLGYFVNFLIGMVFGPLAGILAGIATDLIGTMIVGAAQWHIGFVFAKSMLGFLGSLVFVFKNNKHWVWLMVWSYAIGLFLVIFVVHPISFATVGGPSLAVAYSLTKFIVYPIELVLYPLLTYTSIRVIYILVKKDLNSKNKQWILRNDAVIF
>NZ_CP031288.1|WP_036427822.1|907656_909237_+|diacylglyceryl-transferase
MSTTYFEWIKQHGDPSLARSFFQLIPAYPIFMFLGISSVIIASIICLKLKAIPLKEFEISIFIIVPFGIFGATIFGKVFLPFYQHSNTWYRIFFFWEPGMSLFGSLLFGILAGIAWFLKRSKTTMISLWVYADCIIPNILLGQVIGRWGNFYNHEILGQIVDYNSLYWLPESIRNNLFYFPNFVEFHHLNNPTDLLVNHYNWWDFNSNTWSEVQNFVNNNNQTIKDVLNQKITYHQPLFLYESIANLFLWLIVMFIINNLTRWINHPQPWELCPKAYPGWFNKQYKYLSEEQIINFNSIVPIKYKKIIIDIENKQTVVLKLSFYQVWNKAFYYYEPDHKKVSQLESKIEEFNKIKNKDRLNFQNIKSNCKHQLDLINKKYRFKLDNLNKNSLEYQKIINLKSEEIKKNKELLMISKNNYYQKYGFWNLFFNINIFSKEIEKLNNPNQFKVIRSGVLTGCYILGYLIIRIILKTFRQNHELFIQNHRAINFIILSAILLSGIFIILLTQFISPYKWRQIGWLYERSY
>NZ_CP031288.1|WP_019269685.1|909220_910153_+|thioredoxin-disulfide-reductase
MKGLTNEIYDVIVVGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLIENYPGFETIQGPDLASKMYLQALSLNASVEFVGVDSIFKNDDDIFEVSLANGETKKAYSVILATGTQENKLGIKGEDKLYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAKLKSQPNVEFLLKSQVKEIHGTEKVESLTINTPNGEKKLVVSAIFPYIGSTPLIDSVKHLCIENEKGYIPTNDKMQTEIKGLFVAGDVRDVPLRQIAIACGDGAIAGQMAVEYVQEVK
>NZ_CP031288.1|WP_036427819.1|910161_911592_+|diacylglyceryl-transferase
MESNLKLKIDKRVIIYTSLWIILSALIISLIVLSSKYFRIDWVQNRGFDTVLEYGNVKDVYLTKSNGTGGIRVYALTMTLGMIVAIGFSLYNFNKKDLSVSELAIGVIFIIPCSLFGASFFGKLNAEGIGRHANGSTFWGLFAFWEGGMAIHGGVYVGSIVGLLIFYIIGRKTKVSLLVYADCIIPNILLGQAIGRWGNFFNHEVLGTPVAKIANSIPSHSDKAIDQIFSTYLQTHSRPLFLPGFILKNCLSIYSGENQVINNISLENGNVVLLSPIFFYESIALLLGWFVIMFIIPNVWKLFIKPIDKNNNVYKIDHKFSFYQFFNPWLKSTETKLSSKDAWKKTLNENVYDNASQTYINLTNNIDSKDYLEKKLVKNYVLNKLNNKNNYPITKAGVQMFSYFLVWSIVRYVLEAQRPNDHLFIMHYKNFSLFVIGLSAIVGLIGMILSQHFLPSVFRKPGWLYEVEYFKVRKIN
>NZ_CP031288.1|WP_019269687.1|911603_912533_+|DNA-binding-protein-WhiA
MSFALEVKEEIVMHSFNEEQKLAYLSGFIRYSSDIIFSNNTSKIRFSTISNKIARTLLSFCRQLFDGQVEISIIQSQVLKKHKNFVLTLIGNINKFLQKLRIYDQNNQKIYVFKVKEEIKDKTSIIRAYIAGIFTAIGSVNSPKTSNYHLDLQFKTKIDAINFIELTNDLGFNFKLLERTSNRYVCYIKKSIMVSDFLKLIDAYNSVMQFENERISRDVYNSINRVNNFDISNQTKTLVTGKKQIEIINYLKQTNQFHLLSKKAQVLADLRLNFPDYSYNELVQEMQKMGYEITKSGISSLFKNIEKLS

Crispr_ID: NZ_CP031288_5

• CRISPR_ID: NZ_CP031288_5
• CRISPR_location: 896745-896993
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP031288_5

Consensus_repeat	Method
AATCAAGATTTATCAAAATGAGAT	CRISPRCasFinder

spacers of NZ_CP031288_5

>5.1|896769|51|NZ_CP031288|CRISPRCasFinder
GTTTCAAATGTAACAGATATGACACAAATGTTTTTACAAGCAAAACAATTT
>5.2|896844|51|NZ_CP031288|CRISPRCasFinder
GTAGGTAACGTTAAGAAAATGAGAGCGATGTTTCGTGAAACTGAAAAATTT
>5.3|896919|51|NZ_CP031288|CRISPRCasFinder
GTTTCAAAAGTTGAAGATATGGGAAATATGTTTATGCAAACTAAAGAGTTT

CRISPR arrays and Neighbor proteins around NZ_CP031288_5

CRISPR arrays

The CRISPR arrays of NZ_CP031288_5

>merge|NZ_CP031288|5|896745-896993|CRISPRCasFinder
AATCAAGATATTTCAAAATGAGATGTTTCAAATGTAACAGATATGACACAAATGTTTTTACAAGCAAAACAATTTAATCAAGATCTTAACAATTGAAATGTAGGTAACGTTAAGAAAATGAGAGCGATGTTTCGTGAAACTGAAAAATTTAATCAACCTTTAAACAAGTGAAATGTTTCAAAAGTTGAAGATATGGGAAATATGTTTATGCAAACTAAAGAGTTTGATCAAGATATTTCAATGTGAAAA

>NZ_CP031288|5|4|896745-896993|CRISPRCasFinder
AATCAAGATATTTCAAAATGAGAT	GTTTCAAATGTAACAGATATGACACAAATGTTTTTACAAGCAAAACAATTT
AATCAAGATCTTAACAATTGAAAT	GTAGGTAACGTTAAGAAAATGAGAGCGATGTTTCGTGAAACTGAAAAATTT
AATCAACCTTTAAACAAGTGAAAT	GTTTCAAAAGTTGAAGATATGGGAAATATGTTTATGCAAACTAAAGAGTTT
GATCAAGATATTTCAATGTGAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031288.1|WP_036427856.1|888157_888892_-|DUF285-domain-containing-protein	unknown	unknown	gnl|CDD|308794
NZ_CP031288.1|WP_036427848.1|880799_882113_+|thymidine-phosphorylase	unknown	unknown	gnl|CDD|274244
NZ_CP031288.1|WP_036427828.1|897263_898733_-|hypothetical-protein	unknown	unknown	gnl|CDD|274765
NZ_CP031288.1|WP_036427842.1|892971_894270_-|adenylosuccinate-synthase	unknown	unknown	gnl|CDD|234904
NZ_CP031288.1|WP_036427839.1|894554_895355_-|TatD-family-hydrolase	unknown	unknown	gnl|CDD|238635
NZ_CP031288.1|WP_036427819.1|910161_911592_+|diacylglyceryl-transferase	unknown	unknown	gnl|CDD|376615
NZ_CP031288.1|WP_142796154.1|891680_892988_-|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|176464
NZ_CP031288.1|WP_142796155.1|898735_899695_-|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl|CDD|224383
NZ_CP031288.1|WP_019269687.1|911603_912533_+|DNA-binding-protein-WhiA	unknown	unknown	gnl|CDD|224398
NZ_CP031288.1|WP_142796153.1|883770_884307_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269681.1|901977_904818_+|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl|CDD|234734
NZ_CP031288.1|WP_036427822.1|907656_909237_+|diacylglyceryl-transferase	unknown	unknown	gnl|CDD|223754
NZ_CP031288.1|WP_142796156.1|899953_901969_+|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl|CDD|235395
NZ_CP031288.1|WP_019269685.1|909220_910153_+|thioredoxin-disulfide-reductase	unknown	unknown	gnl|CDD|273540
NZ_CP031288.1|WP_029333391.1|884974_886378_+|magnesium-transporter	unknown	unknown	gnl|CDD|225148
NZ_CP031288.1|WP_045076262.1|891106_891658_-|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl|CDD|223707
NZ_CP031288.1|WP_142796170.1|882155_882440_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_036427858.1|886379_887042_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl|CDD|234649
NZ_CP031288.1|WP_019269683.1|905947_906622_+|folate-family-ECF-transporter-S-component	unknown	unknown	gnl|CDD|275311
NZ_CP031288.1|WP_019269682.1|904810_905920_+|dihydrofolate-synthase	unknown	unknown	gnl|CDD|223362

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP031288.1|WP_036427856.1|888157_888892_-|DUF285-domain-containing-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	7.58124e-53
NZ_CP031288.1|WP_142796154.1|891680_892988_-|adenylosuccinate-lyase	gnl|CDD|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
NZ_CP031288.1|WP_036427842.1|892971_894270_-|adenylosuccinate-synthase	gnl|CDD|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP031288.1|WP_036427839.1|894554_895355_-|TatD-family-hydrolase	gnl|CDD|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.08645e-97
NZ_CP031288.1|WP_036427819.1|910161_911592_+|diacylglyceryl-transferase	gnl|CDD|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	1.69938e-22
NZ_CP031288.1|WP_036427828.1|897263_898733_-|hypothetical-protein	gnl|CDD|274765	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	0.00297957
NZ_CP031288.1|WP_142796155.1|898735_899695_-|DNA-polymerase-III-subunit-delta	gnl|CDD|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	6.00403e-22
NZ_CP031288.1|WP_019269687.1|911603_912533_+|DNA-binding-protein-WhiA	gnl|CDD|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	6.16137e-53
NZ_CP031288.1|WP_036427848.1|880799_882113_+|thymidine-phosphorylase	gnl|CDD|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP031288.1|WP_019269681.1|901977_904818_+|excinuclease-ABC-subunit-UvrA	gnl|CDD|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP031288.1|WP_036427822.1|907656_909237_+|diacylglyceryl-transferase	gnl|CDD|223754	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane].	1.47647e-23
NZ_CP031288.1|WP_142796156.1|899953_901969_+|excinuclease-ABC-subunit-UvrB	gnl|CDD|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP031288.1|WP_019269685.1|909220_910153_+|thioredoxin-disulfide-reductase	gnl|CDD|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	3.60077e-126
NZ_CP031288.1|WP_029333391.1|884974_886378_+|magnesium-transporter	gnl|CDD|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	6.55263e-79
NZ_CP031288.1|WP_045076262.1|891106_891658_-|hypoxanthine-phosphoribosyltransferase	gnl|CDD|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	1.1132e-65
NZ_CP031288.1|WP_036427858.1|886379_887042_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl|CDD|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.58008e-56
NZ_CP031288.1|WP_019269683.1|905947_906622_+|folate-family-ECF-transporter-S-component	gnl|CDD|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	8.93282e-35
NZ_CP031288.1|WP_019269682.1|904810_905920_+|dihydrofolate-synthase	gnl|CDD|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	9.32674e-66

Protein sequences

>NZ_CP031288.1|WP_036427839.1|894554_895355_-|TatD-family-hydrolase
MIDDNKIFDNHIHFNDDLKYKDANIEQLIKEAQKEHVTAWLCSSFDLTSSKKAIEFSEQFENVFASIAIHPNEVQNFNDSVFDELEQLITNKKVVCIGETGLDYFYSKEDIKKQKEFFKKHIELAIKYNKVLQMHIRDQKDQFQAYDDVIEIIKDLNQVIKVVHCFSANDVYAQKFLDLDCYINIGGAVTFKNAKDLQKAVKIIPLKKMLLETDAPYLAPDPYRGQVNHPKYIYLTALKIAELKNIDVKEVIRITTQNSKKIFNLN
>NZ_CP031288.1|WP_036427842.1|892971_894270_-|adenylosuccinate-synthase
MKNNYKSLVIVGSQWGDEGKGKITDYFSQKADAVVRFAGGDNAGHMIEFNNKRHKVTIIPSGVFNPKVKNIIGNGTVINLKSLVNEIKRLNESNISTDNVYISDRAHLIFDWHTLIDQLQEENRKENKIGTTKRGIGPSYADKAARYGIRICDLKSPNFKEIFKENLDYHNEIITKVYNHKPLDFDQVYNELLTNYQLIKNNIIDSGYEVSNLINENKFVLFEGAQGVLLDIDHGTYPFVTSSNCSANNASIGTGIHAKQIQKVIGIVKAYNTRVGSGAMPTEIKTELANKLRERGREYGSNTGKPRRIGWLDLVALKYAIRVGGIDQLFLTLFDVLDTEEKIKICTAYKLDNQIIHTIPANENDFKRCEPIYEELDGWNEDITKITSFEQLPINAQNYIKRIQEIVNVPFLGFSVGPDRKQTILIKGEFDD
>NZ_CP031288.1|WP_142796154.1|891680_892988_-|adenylosuccinate-lyase
MNLMISRYQIKEINQIWSDENKYNTWLKVEQLVCQAWAKLGYINKQDILKINNNLKVDLNRMLEIEQETKHDVVAFTRMLSEQLDSESKWIHLGITSTDIVDTAQNYLIKQSNQIVDNELKNISDTLKKLAFEHKNTLIMGRTHGMYGEPTSLGLKFALWFDEFQRHIKRFSLAKSDIQVVKISGSMGNYANLEPIIEEYVANKLDMNVDSLSTQVCQRDRHIFLVEVLANIASTLEKISTEIRLLQRSDVNELAEGFFKNQKGSSSMPHKKNPISSENVAGLSRYIKSIVNIVLENNNLWHERDISHSSNERIYLPDIFNLIIYILKRMNETLTNLVINQSQMLNHIKQAKNIYFSQRVLTFILLNYKNVTREKIYDLIQQITFKCFKDQSDFKDEVLKSSLTEYVSIQQLEELFDDQFFLRHIDYIFNRVFNN
>NZ_CP031288.1|WP_045076262.1|891106_891658_-|hypoxanthine-phosphoribosyltransferase
MYDLKNVKKVLFTKEQINERIKQVAKEVKKYYLEQPPVNGPLITIGLLKGCVIFNTEFVLNFDYPIQMDFMAVSSYSGMQSTGAIKIKLDTSLDLTNRDVLIIEDMVDTGLTLSKVKEHIIYKGANSVKVVTLVDKKDFHTVDFTPDWNCFDIDDYYIVGYGFDCNEDYRNLPYIGLYQPDNN
>NZ_CP031288.1|WP_036427856.1|888157_888892_-|DUF285-domain-containing-protein
MSTLSCITIAGVVGGAVNYKIVNKVDKSKPPVLVKQLKKAVYNDDKTECLEIGYFKNSHGEIQIETFPKTVNKVPKNLPKQISSLSLAFHLNLNSQITNLDKWDTSNITNMSVMFAGAEKFNQDISKWNTSNVTNISGMFIWSNSFNQDLSSWDVSNVTNMHSMFYGANSFNQNLSSWDVSRVINMNGMFYGAKSFNQDLSNWDTRNLSKNVHTKNGITYTGWTNFNKDAHPDFKDNKLPRFPK
>NZ_CP031288.1|WP_036427858.1|886379_887042_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRKKAWTEQFLNQHTSYLIKYGKKINLNEIFLNNNLTCLEIGCGKGQFLTTLALKNPNLNYIGMEKSSTITAIGLKKSLKEFQNNSKKMTNINYLNKYAENLLEIFYTDSFSRIYLNFSDPWPKARHYKKRLTYLGFLDIYSDILIKNGFLEFKTDNDSLYNFTLEQLKLTNKWETISNTLDLYNDQELLKDNVPTEYETKFHLANKNIYKIVIKNLK
>NZ_CP031288.1|WP_029333391.1|884974_886378_+|magnesium-transporter
MVDLENKEQEILEFYNNKEFDKCIEIIKKLRYADVGEILNYLDEKIAFNLYKKLEINKASQIFNYLSFDLKEYILTNLNQTKIKQLINDLYTDDIINAVESMPVEVVKRVFNAASKEQKKEIASILKYDIDTAGSIMSVNFLSVKQTTTVSKTIKEIQKNHDDYDEIDDVFVVNKLNQLVGSIEVKDLILNDMNTKIENIMNTKVISINSNQSQEDASNALKKYDISTLAVVDNNNVLVGIITSDDIIDVLIEETNEDMQKYTGIRTNETNYFDTSIFEMFISRIWSLVLMLGLTIITNSLLLIIFQKYNWTPAIKTKEELLFMLIPLSIILSTVIICCANQTLVMIRRAISLEQINKKSLKTIALKELVVSLMIAFVLIIVNLLKMILIYAIKYNANLTNINIWNSILISSAGIFISIIFANLLSLFLPLIVKKIGKDSSSVSLPLFALIIDILCVGVFLGIGLLV
>NZ_CP031288.1|WP_142796153.1|883770_884307_-|hypothetical-protein
MSKKYNKKQIILNSLSFSSLVVLPIFVTSCGLSFKNHNLTSKSKTWQIPTTNANKKPTIDSESNLNNFKNSEILNSLNFSSSTKTSLKKLDNFYPKQYIEEFKEKNLTKDKVQEIIFNHNIPSNYYSHPKFKLERKYITLDKENQVEKLKLLDSENNQEIQNVTWYQRLRFQTTNYYL
>NZ_CP031288.1|WP_142796170.1|882155_882440_-|hypothetical-protein
MQFRWKDSFDKFASDIQNVEITKANDVYNIVKLEKPNTIIGVDNTMEYRVINKNSQWESIISNKIDNLKSGTYKIRTKANNNSLASNSHQITIN
>NZ_CP031288.1|WP_036427848.1|880799_882113_+|thymidine-phosphorylase
MFTFTDIIEKKKHNIELTQEEISWLINSYTKNEITDYQMASFCMATYFTDMTARETAFLTKAYIESGDRYDLSKISGFKADKHSTGGVGDKTSLVYAPLVASYGIKVCKLSGRGLGKTGGTVDKLESFPGWKSEVTNDEFVDVINKANMSLIAQSDNIVPADKKIYALRDVTGTIDSMPLIVASIMSKKLIVENDGLILDVKTGNGAFMTTIEDAKDLANRMIEVGKQYNRKVAVVLTNMNKPLGRAIGNAIEVKEAWETLNGNGPKDFNELISTLVGITLLQAKIFTDLATAKQDVLKRLQSKQAAPYLKEFVTAQGGDWSVLENYDEVFKCKNKIEIKAVNSGFIRYKRAEEFGMILIELGAGRFKKTDTIDRAAGIYLDKQYGDYVNTGDVIMTLYTNREVNLKWKEMVHETYELLDKEPVKEVIWEIISDDVK
>NZ_CP031288.1|WP_036427828.1|897263_898733_-|hypothetical-protein
MKELYLKLLNLSLNILKTNKLKYFILKNEEFKLKYLNLINDILTLETNHNQSLDDKVFAKTFAKAFILITKPTTKQRFEVNDDITIEQIENNYKQLVSYIVKEFKVVKSKLVSENEQISDEIINQNAILTDQVISRIEARLSKQEQSKEQKTSENFSKTTTVVTETQTQQEVENKQAQTSQQTDFLNSFNPNMFSNLNNADLPVLPSQDPRFHSYKGKPKFMPYLKIALCVLAVISTILLVSSLLFLSYTTIDISSSNYANIIESNKNWSDLIKVGDKELLKAWPIGISQIVLMFKRAFGLPILIYMIPTILICTYTKKTFSNPREKYRIPLFPVIFFIMFFIGLTVNLYEFTSLEKFKEAWKLFLSGMTSKTDIDINKFFELVLKDHALKFQLGSALVISSLIVTILTLLLAIVLIFVNPKIDRQKIVKATLEHQKAVMAIMQGQKYEIDPSLYEEDEIEIKHPSKLKSFFLKLKNKKKKENNKDKNN
>NZ_CP031288.1|WP_142796155.1|898735_899695_-|DNA-polymerase-III-subunit-delta
MILMYFFYSEDIFLLNNQIKKTIKELQQKDQYDVLSFSLIEDDFNTIYDNVTNLNFFSSKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFGLNSNKFSKKLKIAKYIESNFNVKYLSLWDEKQTIKYIIDYLKSKNKIIDINLASQIYNLLPNDLQIITNEINKLANLKSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGLISLIDTNLSFYRDIVILKKQFKSEEQISTILKSHIYRVKLAVNNSYDINTLNDKIKIVYKIYKGIINWNINKKTLVEYMLIKNMKG
>NZ_CP031288.1|WP_142796156.1|899953_901969_+|excinuclease-ABC-subunit-UvrB
MLWENIMFIANNKYKLVTKYKPSGDQNQAIEKLNKGLIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIAHNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRLSACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRNDIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIHPAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCSGIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEYGFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVIQQIIRPTGLLDPQIEIRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLECSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVARNVNGKAIMYADTVSQAMDEAIKETNRRRRIQEEFNKKHNITPKTISKAISESILSEQTKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELENEKNTN
>NZ_CP031288.1|WP_019269681.1|901977_904818_+|excinuclease-ABC-subunit-UvrA
MSTDKIIIKGAREHNLKNIDLELPKNKLIVFTGLSGSGKSSLVFSTIYQEGRRRYIESLSAYARQFLGGNEKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLYARIGQPYCINNHGQIKAVSIKEIVENIKQSTSDGEQIHILSPVIRDKKGTHIDILEKLRNDGFIRVIVDDQLRMLDDQINLEKNQRHNIDIVVDRIIYHNNDEINSRIFTAVEMGLKYSNNLIKIAFPNSNKQEKLFSTSFSCKVCDFVVPELEPRLFSFNAPLGACELCNGLGVSLEPDINLILPDLKLSINQGGVVYYKNFMHTKNIEWQKFRILCDYYYIDLNTPLKDLTQKQRDIILWGSDREIDIKIVTENNNKYEKYDFIEGNAALIKRRYFESKSEEARKWYSKFMSSKICKQCKGSRLNDIALSVKINEKSIFDYTNMSISEQLDFLLNIDLTPTQAMIAKLVLDEIISRTNFLNEVGLGYLNLSRTATTLSGGESQRIRLAKQIGSQLTGILYVLDEPSIGLHQKDNDKLIKTLKHLRDLGNTLIVVEHDEDAMKSSDWIVDIGPRAGEFGGEITFSGTYQDILKSDTITGRYLSRKEGIVVPKTRRGGNGKKIEIIGASENNLKNINVTIPLNKFITITGVSGSGKSTLLEDIVYKGIHNNLSKEYLPIGKVKEIKGIENINKAIYISQEPIGKTPRSNPATYTSVFDDIRDLFTNLPEAKIRGYKKGRFSFNVHGGRCEHCQGDGVITISMQFMPSVEVVCEICDGKRYNDETLTVKYKNKSIADVLNMSVSEAYVFFENIPQIKQKLETILEVGLGYIKLGQNATTLSGGESQRIKLSTYLLKKQTGNTMFLLDEPTTGLHVDDVKRLIGVLNKLVDLGNTVLCIEHNLDFIKVSDHIIDLGPDGGEYGGQVVVTGTPEQIIDHPTSYTAKYLKDYIVND
>NZ_CP031288.1|WP_019269682.1|904810_905920_+|dihydrofolate-synthase
MISIDQELFPIIQRLNREVVFDKVLDELNHPEKFLKVINVVGTNGKGSTSFYLSKGLLKKYQKVGLFISPAFLYQNERIQINNTPISDNDLKSYLHKIDYLIKKYQLHFFEIWTLIMILYFKDQKVDIVVCEAGIGGIRDTTSFLTNQLFSLCSSISYDHMDMLGNSIDEIIYNKVNIAKPNTKLFISHDNLKYKKIINKQIINKNVELIYTDLYEDKIIYQKANKGLVKKVLEELGIFDLDIFELEPPLGRFTTLQTFPNQIIIDGAHNVDGIKKLIQSVKSLNKEFIVLYASITTKEYLKSLELLDKNFKEVYICEFDYIKSWSIEHINHKNKIKDWKIFLKNNSKNIIICGSLYFIPLVYTFLKNN
>NZ_CP031288.1|WP_019269683.1|905947_906622_+|folate-family-ECF-transporter-S-component
MEFNSLSVYWITTAIFAVLLISMWVLGLWMEGFKLKTFTIKNITIIGTLVALSVILSYVVNRNFLQILGTRITLGYFVNFLIGMVFGPLAGILAGIATDLIGTMIVGAAQWHIGFVFAKSMLGFLGSLVFVFKNNKHWVWLMVWSYAIGLFLVIFVVHPISFATVGGPSLAVAYSLTKFIVYPIELVLYPLLTYTSIRVIYILVKKDLNSKNKQWILRNDAVIF
>NZ_CP031288.1|WP_036427822.1|907656_909237_+|diacylglyceryl-transferase
MSTTYFEWIKQHGDPSLARSFFQLIPAYPIFMFLGISSVIIASIICLKLKAIPLKEFEISIFIIVPFGIFGATIFGKVFLPFYQHSNTWYRIFFFWEPGMSLFGSLLFGILAGIAWFLKRSKTTMISLWVYADCIIPNILLGQVIGRWGNFYNHEILGQIVDYNSLYWLPESIRNNLFYFPNFVEFHHLNNPTDLLVNHYNWWDFNSNTWSEVQNFVNNNNQTIKDVLNQKITYHQPLFLYESIANLFLWLIVMFIINNLTRWINHPQPWELCPKAYPGWFNKQYKYLSEEQIINFNSIVPIKYKKIIIDIENKQTVVLKLSFYQVWNKAFYYYEPDHKKVSQLESKIEEFNKIKNKDRLNFQNIKSNCKHQLDLINKKYRFKLDNLNKNSLEYQKIINLKSEEIKKNKELLMISKNNYYQKYGFWNLFFNINIFSKEIEKLNNPNQFKVIRSGVLTGCYILGYLIIRIILKTFRQNHELFIQNHRAINFIILSAILLSGIFIILLTQFISPYKWRQIGWLYERSY
>NZ_CP031288.1|WP_019269685.1|909220_910153_+|thioredoxin-disulfide-reductase
MKGLTNEIYDVIVVGSGPAGLTSAIYTARAGLKTVIYEQSAPGGKLIKTDLIENYPGFETIQGPDLASKMYLQALSLNASVEFVGVDSIFKNDDDIFEVSLANGETKKAYSVILATGTQENKLGIKGEDKLYGKGVSYCAVCDGAFYKNKPVAVVGGGYSAVQEAMYLSQLVDKVYLIVRRDVFRADANKVAKLKSQPNVEFLLKSQVKEIHGTEKVESLTINTPNGEKKLVVSAIFPYIGSTPLIDSVKHLCIENEKGYIPTNDKMQTEIKGLFVAGDVRDVPLRQIAIACGDGAIAGQMAVEYVQEVK
>NZ_CP031288.1|WP_036427819.1|910161_911592_+|diacylglyceryl-transferase
MESNLKLKIDKRVIIYTSLWIILSALIISLIVLSSKYFRIDWVQNRGFDTVLEYGNVKDVYLTKSNGTGGIRVYALTMTLGMIVAIGFSLYNFNKKDLSVSELAIGVIFIIPCSLFGASFFGKLNAEGIGRHANGSTFWGLFAFWEGGMAIHGGVYVGSIVGLLIFYIIGRKTKVSLLVYADCIIPNILLGQAIGRWGNFFNHEVLGTPVAKIANSIPSHSDKAIDQIFSTYLQTHSRPLFLPGFILKNCLSIYSGENQVINNISLENGNVVLLSPIFFYESIALLLGWFVIMFIIPNVWKLFIKPIDKNNNVYKIDHKFSFYQFFNPWLKSTETKLSSKDAWKKTLNENVYDNASQTYINLTNNIDSKDYLEKKLVKNYVLNKLNNKNNYPITKAGVQMFSYFLVWSIVRYVLEAQRPNDHLFIMHYKNFSLFVIGLSAIVGLIGMILSQHFLPSVFRKPGWLYEVEYFKVRKIN
>NZ_CP031288.1|WP_019269687.1|911603_912533_+|DNA-binding-protein-WhiA
MSFALEVKEEIVMHSFNEEQKLAYLSGFIRYSSDIIFSNNTSKIRFSTISNKIARTLLSFCRQLFDGQVEISIIQSQVLKKHKNFVLTLIGNINKFLQKLRIYDQNNQKIYVFKVKEEIKDKTSIIRAYIAGIFTAIGSVNSPKTSNYHLDLQFKTKIDAINFIELTNDLGFNFKLLERTSNRYVCYIKKSIMVSDFLKLIDAYNSVMQFENERISRDVYNSINRVNNFDISNQTKTLVTGKKQIEIINYLKQTNQFHLLSKKAQVLADLRLNFPDYSYNELVQEMQKMGYEITKSGISSLFKNIEKLS

Crispr_ID: NZ_CP031288_6

• CRISPR_ID: NZ_CP031288_6
• CRISPR_location: 980141-980242
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP031288_6

Consensus_repeat	Method
AATCAAAATATAAATAATTCAAAT	CRISPRCasFinder

spacers of NZ_CP031288_6

>6.1|980165|54|NZ_CP031288|CRISPRCasFinder
CAAATTTCAAATACTAATAGTAATAGTTATAAAAATAAAACAACTAATACCAAT

CRISPR arrays and Neighbor proteins around NZ_CP031288_6

CRISPR arrays

The CRISPR arrays of NZ_CP031288_6

>merge|NZ_CP031288|6|980141-980242|CRISPRCasFinder
AATCAAAATATAAATAATTCAAATCAAATTTCAAATACTAATAGTAATAGTTATAAAAATAAAACAACTAATACCAATAATCAAAATATAAATATTTCAAAT

>NZ_CP031288|6|5|980141-980242|CRISPRCasFinder
AATCAAAATATAAATAATTCAAAT	CAAATTTCAAATACTAATAGTAATAGTTATAAAAATAAAACAACTAATACCAAT
AATCAAAATATAAATATTTCAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031288.1|WP_036428279.1|975274_976249_-|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl|CDD|129820
NZ_CP031288.1|WP_142796171.1|964854_965583_-|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|225212
NZ_CP031288.1|WP_036428293.1|988486_988936_+|DNA-binding-protein	unknown	unknown	gnl|CDD|379233
NZ_CP031288.1|WP_045076282.1|989869_990850_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_029333415.1|996996_998886_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl|CDD|235362
NZ_CP031288.1|WP_019269719.1|973769_975272_-|lysine--tRNA-ligase	unknown	unknown	gnl|CDD|234778
NZ_CP031288.1|WP_019269738.1|988983_989637_-|purine-nucleoside-phosphorylase	unknown	unknown	gnl|CDD|350157
NZ_CP031288.1|WP_036428289.1|984700_986791_+|hypothetical-protein	unknown	unknown	gnl|CDD|366776
NZ_CP031288.1|WP_019269721.1|976250_976565_-|DUF1904-family-protein	unknown	unknown	gnl|CDD|370190
NZ_CP031288.1|WP_036428281.1|978019_978847_-|hypothetical-protein	unknown	unknown	gnl|CDD|225239
NZ_CP031288.1|WP_142796160.1|979517_979817_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP031288.1|WP_019269722.1|976670_977939_-|serine--tRNA-ligase	unknown	unknown	gnl|CDD|235461
NZ_CP031288.1|WP_036428285.1|982252_983995_-|PTS-transporter-subunit-EIIC	unknown	unknown	gnl|CDD|273923
NZ_CP031288.1|WP_019269737.1|987527_988433_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|378820
NZ_CP031288.1|WP_011387661.1|973348_973657_+|thioredoxin	unknown	unknown	gnl|CDD|239245
NZ_CP031288.1|WP_036428283.1|978914_979499_-|membrane-protein	unknown	unknown	gnl|CDD|275315
NZ_CP031288.1|WP_036428295.1|991703_992639_+|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl|CDD|238570
NZ_CP031288.1|WP_045081958.1|972509_973337_+|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|319818
NZ_CP031288.1|WP_036428287.1|984102_984552_+|peroxiredoxin	unknown	unknown	gnl|CDD|239315
NZ_CP031288.1|WP_071646497.1|982026_982209_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP031288.1|WP_036428279.1|975274_976249_-|tRNA-dihydrouridine-synthase-DusB	gnl|CDD|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.47666e-125
NZ_CP031288.1|WP_142796171.1|964854_965583_-|MBL-fold-metallo-hydrolase	gnl|CDD|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.39189e-34
NZ_CP031288.1|WP_036428293.1|988486_988936_+|DNA-binding-protein	gnl|CDD|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	0.000536294
NZ_CP031288.1|WP_029333415.1|996996_998886_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl|CDD|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP031288.1|WP_019269719.1|973769_975272_-|lysine--tRNA-ligase	gnl|CDD|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP031288.1|WP_019269738.1|988983_989637_-|purine-nucleoside-phosphorylase	gnl|CDD|350157	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP. Escherichia coli purine nucleoside phosphorylase (PNP)-I (or DeoD) accepts both 6-oxo and 6-amino purine nucleosides as substrates. Trichomonas vaginalis PNP has broad substrate specificity, having phosphorolytic catalytic activity with adenosine, inosine, and guanosine (with adenosine as the preferred substrate). This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	9.19093e-81
NZ_CP031288.1|WP_036428289.1|984700_986791_+|hypothetical-protein	gnl|CDD|366776	pfam01732, DUF31, Putative peptidase (DUF31). This domain has no known function. It is found in various hypothetical proteins and putative lipoproteins from mycoplasmas. It appears to be related to the superfamily of trypsin peptidases and so may have a peptidase function.	4.3182e-38
NZ_CP031288.1|WP_036428285.1|982252_983995_-|PTS-transporter-subunit-EIIC	gnl|CDD|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.24574e-91
NZ_CP031288.1|WP_036428281.1|978019_978847_-|hypothetical-protein	gnl|CDD|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	0.00569037
NZ_CP031288.1|WP_045081958.1|972509_973337_+|Cof-type-HAD-IIB-family-hydrolase	gnl|CDD|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.60488e-45
NZ_CP031288.1|WP_019269722.1|976670_977939_-|serine--tRNA-ligase	gnl|CDD|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP031288.1|WP_019269721.1|976250_976565_-|DUF1904-family-protein	gnl|CDD|370190	pfam08921, DUF1904, Domain of unknown function (DUF1904). This domain is found in a set of hypothetical bacterial proteins.	2.87258e-08
NZ_CP031288.1|WP_019269737.1|987527_988433_+|alpha/beta-fold-hydrolase	gnl|CDD|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.77881e-49
NZ_CP031288.1|WP_011387661.1|973348_973657_+|thioredoxin	gnl|CDD|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.13913e-34
NZ_CP031288.1|WP_036428283.1|978914_979499_-|membrane-protein	gnl|CDD|275315	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family. This family of proteins is restricted to the Mollicutes (including Mycoplasma, Spiroplasma, and Ureaplasma). Members belong to a superfamily of multiple membrane-spanning proteins, among which those with assigned activities function as the S component (the specificity component) of ECF transporters. However, members fail to score better than the trusted cutoffs to previously built models for S component proteins (see pfam07155). [Transport and binding proteins, Unknown substrate].	1.85423e-39
NZ_CP031288.1|WP_036428295.1|991703_992639_+|1-phosphofructokinase-family-hexose-kinase	gnl|CDD|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	2.06093e-110
NZ_CP031288.1|WP_036428287.1|984102_984552_+|peroxiredoxin	gnl|CDD|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	8.23054e-42

Protein sequences

>NZ_CP031288.1|WP_142796160.1|979517_979817_-|hypothetical-protein
MKHMFRKIFKILISLVLAIIVILIGIIVLGFSQSQIDTNFLQRATKVLKETNTIDLLKLNVTTLGQKIGVLLVIYIGPLIFITGFIWNFFKLLFGVFKK
>NZ_CP031288.1|WP_036428283.1|978914_979499_-|membrane-protein
MSNIKIIINWISYFKSIKYIVLTAILSSLLTVIALTTSMIQIAETGLFQVADGLFLSLTFFIPGPMMFVVGCVYASIFDLVSGAAFYIPVSILIHILMFITIKLLVNKLPFYLNIMIAELFIFLYVLYAYIINYYSNANDISQANIKALVSFITDFIQYLVSVISAIFLYNVFDTKTFLNLFNSLNIDFFNKKH
>NZ_CP031288.1|WP_036428281.1|978019_978847_-|hypothetical-protein
MKEYFCNLKTNISKNKKQYLIRSFCLLVGLYIFSLSIALYVPTAVGASHVDFTNFSILTLFKDWAKGTDQKEIPGLVSPTNYKLALMSLYGFLLVVSVIFLTVSIIKEYKVTKNKKLWLQLIPLIVFDVLINVGLSYVIDGQILMLDKIGYLNWMFNSSTAYQFRTIFFLIAFILYIVGLTFWIHSGWLLGSYNSINTNFMRLTKLPFNVSRVLMDVLIIIPGVIMFLVNPISWDIKVKFLLNYVNIGTIGFLFLAGPLLAKSLGFINKITKVYQ
>NZ_CP031288.1|WP_019269722.1|976670_977939_-|serine--tRNA-ligase
MLDINYIEQNLDEVIQRLNKRNQQDYSDDLKYVVSKNLKRKEILVKSEALKSRKKQLSKEIGTLLKEKKVDQSEQAKIEVINLNEQIIKLDEELRVVNDQILEKLLYIPNLPHKDIYFGKSDEDNVEIRKSNHSNLLKHSTPHWQIATKLGLVDFEKGVKLSGSRFLIYTGLGSKLVRSIADLLLKRHEKHGYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQVGEQYLIPTSEVPLTNLHANEILAYDVLPLKYTSFTQCFRQEAGNAGRDTKGMIRLHQFNKVELVKIVHPEESMNELEMLIKDAEDVLNMFDLPYRVVELCSGDIGFSSTKTYDLEVWFPEQNKYREISSCSNCTDFQARNMQTRFKDKDSKIKLVHTLNGSGVAVDRLIAAILENYWDGEKLILPTLLRPYFNNQEFIK
>NZ_CP031288.1|WP_019269721.1|976250_976565_-|DUF1904-family-protein
MPIIKFSGLEKDQVNQFSKNIEKIADLVKADPKNIFVIWENSEIFISESNVNPIYVTVQWMSRPDKEQLLADFIIDYFKNYSQKVWVFFTDVNSKLYAHGKKLG
>NZ_CP031288.1|WP_036428279.1|975274_976249_-|tRNA-dihydrouridine-synthase-DusB
MKIGNIQIEGKVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTFDMLNVNKVEHPISMQIFGNNVEEFITATKWIESNVDCDIIDLNLGCPAPKVAIRSQSGSALLKTPELIYEIVKNVVKNTTKPVTAKIRLGWDKNSVNAVKVAKLIQKAGASAIAVHARTRSDFYTGHADWEKIKEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMISRACQGNPWIFEQINHYLKTGKELEKPNFDEWKTTVLKHLKLLVDLKTEPIAIKEFRKHLTWYLDVLNNKQLTKILKEKANKIETFKDVENIIKEYREE
>NZ_CP031288.1|WP_019269719.1|973769_975272_-|lysine--tRNA-ligase
MLDDRKFSEQELVRRNKYKNLVDQNKDPYKITNWKRNTTLLKLNEKYKDYSKEELLNLTQKLVIVAGRIKLYREAGKKAAFVNIDDQDSSIQLYVRLDEIGQEAFEDFRDLDLGDIIGVKGIMMRTDHGELSIRCKEVVLLSKALRPLPDKHAGIQDIEEKYRRRYVDLIMNHDVRKTFQARTKIIRKMQNFLDNRGYMEVETPILHSLKGGTSAKPFVTHYNVLNTDVYLRIATELHLKRLIVGGFEGVYEIGRIFRNEGMSTRHNPEFTSIELYVAYEDMFFLMDLTEEIFRVCNSAVNSSSVIEYNNVKIDLSEPFKRLHMVDGIKQVTGVDFWQEMTVEQALELAKKHNVYVEKHQESVGHIINLFYEEFVESTIIEPTFVYGHPKEISPLAKSNPNDPRFTDRFELFIIGREYANAFSELNDPIDQYERFKAQLEEESKGNDEANDMDIDFVEALEHAMPPTAGIGIGIDRLVMLLTNSDSIKDVLLFPQMKPKE
>NZ_CP031288.1|WP_011387661.1|973348_973657_+|thioredoxin
MADIIKITSKEQFDKEIKEGKVLVDFNATWCGPCKMLAPILHDFAKKVDGVKFLDVDVDLNRQVAEEFKIMSIPTLITFENGNQKNKHIGFATPDQLKNLID
>NZ_CP031288.1|WP_045081958.1|972509_973337_+|Cof-type-HAD-IIB-family-hydrolase
MIIFSDLDGTLLYDDYIFSPKTIEVVEKLYKKGIYLIPITARTIKDLKQKANLLGIDKFKGIIVASNGAQIYDYKTDTLIFDQTLPKEFIKEIFNRYHNKFFAKLIFYSPNCCYVFAEGRNSKYWAHQVMGLKYISVDSPDQIDEPITHFYIVTNSKATPEENLNEYKYLMNHYSDDYKVDSYNNRVFDISVKGVDKGCGVNKVMQYLNLDETNTHSYGFGDGPNDFSLLKACTTGVAMKNGIIELKEIADDITDYSNDKDGVARYICDKILNVD
>NZ_CP031288.1|WP_142796171.1|964854_965583_-|MBL-fold-metallo-hydrolase
MLLSYLISWLIKPSVFLVMLNVGNGNCFIFHDKFKNTTIINDCGVGKGFSKNIGYEFLKYFGINHVDLIIISHNHADHYNAIEAIRKNIKAYETITYNNFLPFKSIKNVNMYFFWNNLKNENDKSLVYLFEYRNIRILFTGDVEKEAEQLLVNNDYFKYVINLKPIDILQVPHHGSNTSSTDEFISLIKPKYGLISGNKRTYNFPRIGTLETLYKHNVKYFISQINGNTFYNFLTNSFWFKK
>NZ_CP031288.1|WP_071646497.1|982026_982209_+|hypothetical-protein
MITGVDNTMEYRLKEDQNWIPIKANKLVKRKRGIYQIRIKPNKTSLPSEIEVVNVINDMN
>NZ_CP031288.1|WP_036428285.1|982252_983995_-|PTS-transporter-subunit-EIIC
MNLNKFKVNKNNFKQFSSKITAILQKFGRGLMLPISILPFAGLLLGIGGAIGANISTTNQIGLVVSESLKAMSQIVFANLAILFTISIVITFTGESGSAAFLAVLGYLVFNSTQSAFIHYNDKTLVDVFYIHKGEWLKSIIGSNLGISSLQTSLFGSIIVGIVIVKIYNKFKYIKLPSALNFFSGIRFLPILIIPSMFLLGLIFLLIWPYVGLLINKIGISLSKTPKCIDGFIYGALGRALMPFGLHHILITLAYQSAFGGVLEYDKLVFKLTELKVDQETINKIQEAFKSFTKNNSQTIIGDQNIWNFINSIPVNRIEQTPIFLWFENNLNINAGRFTQDYPTYLGTCMGIGLAFILTSNKENRKQTASVILSAMGVSFLTGITEPLEFTFLFVTPILYYAVYVPFSGLSYLFMNLVSAHVGVGFARGFIDLLVYGALPVLKGTRFYWAFIFSLIQGVAIFIIFYFWIIKKDLPTPGRKGNELGLISKKDYFELKNKDNSEKRIKEIIKALGSKENIKSVSACATRLRVVVNNESLIKTEELIKLGSLGNIIKNNNIQVIFGGEATIISEKINNILNQE
>NZ_CP031288.1|WP_036428287.1|984102_984552_+|peroxiredoxin
MKNYQLKDHKNNLVELNNLVGTKGLVLFFYPKAKTSLCTLEVIEYQKHLDPFKALGFNVVGVSQDEPNKNDEFCCEQNLSFLLLSDLNKDLVKEFNLTSETIILDNEPFVKYERSTFVLDNQLNLVKEFRNVDHIEHVNDLLEYFKKND
>NZ_CP031288.1|WP_036428289.1|984700_986791_+|hypothetical-protein
MNKINNKLKLFFLTSAVIFPSILTISCNSITNNKPTQQDQNTNNKDQNHQDNSNNSSNEQINDQTNHINETKLFNSHFIDINELQTLTPYQIHRKTKDYIESEKEFNNFLKTNNIDFTINENKEHNQKYWEFVSKLGEYGNIGDTKLNKTKFYNPNIPLSYSIKQQKLEQLKEEEIKDLTSKEFDFTNLIKNNPFGFLPSNLSQLFSYATFNSLEKLFNIKDITFLKSRHDDITGIFELLINTKNKKHYYKVTKQTNLFLKTNEDFFKYIHERGFQLEINVKQWVIERDEKTFEEIKRLNFANASGTAWIIDRVKNDDKDNYELLLATNIHVFNLRNTFDKSIFNNKLEDSKWKQFPVGFYDGKDTTSSEDNRKMAIYLKANRAEKIDNKNGLVESDVDKEKSIEAFEIYSQYLIAPYYIPRYGTDHIFFKDINKKSKYFDDNDYLSKTNNSGADFVTLRLKIQKNKLEKLLPSLAKVIEKDQEKDWYIKFKNSKFSPLQTQFYAGYPKHWNPFIRKTQFRGLKSEGGIISTQRKILEDIYFRDIWLKYNEQKNKEYNAINENYKKYERPFIDNEHGMNLTIADQFSTLYTNVPFGQIALKQGASGSMVIDSSFNVIGILNTEVEDTRASKYISIPLFEYQGQKISLPVRIQTNGVILFNSLSNDYLNKDNKEPKIIDDLIEKLKEDKLKTINLNP
>NZ_CP031288.1|WP_019269737.1|987527_988433_+|alpha/beta-fold-hydrolase
MKTEIISTKDNKKIVLYKWDEVIRPLAVIQLVHGSCEHLKRYEDFAKEMNQNNVIVVGIDQRGHGQTSVLNNELGYFNKTKGWECLIEDQLLVNQYIKTNYINLPIYMLGHSMGSFVARSYAIKYSDTIKGLILSGTNQTNSFVLISALFLTSLTSLFIKEKQPNKIIWNISYKTLNKKFKTNNANGVEWLTRDKNIQNQFLNDRLCGFVFSSSAFKDMFKGMLFNLKSKNLKKMDKNLRILLLTGSDEPVSHFSKDVVKFSNKLNKLDYSSQLIIYPNFRHEILNELDKNLVIRDILKFM
>NZ_CP031288.1|WP_036428293.1|988486_988936_+|DNA-binding-protein
MLPKDLDFKLQIIEEHKKSLASKYDIGIWTIRDWIHQYNMFAEQGISKSIVHTKYDPEFKPHVINHKKEYNLSYPETIKLFSIKNSSTVALWEKQFKEKGIKGLSNQIGRPKNNANSYKQLFLQLEEKIADLEQQIDELKQQLNIKDIK
>NZ_CP031288.1|WP_019269738.1|988983_989637_-|purine-nucleoside-phosphorylase
MHIDKNADIASVILIAGDPRRTKWACENLLTDYKLVSDVRNAFVYTGYYKNHKVSFATSGMGQPSIAIYVHELFNDHNVNTIIRVGTCGTYNNDIKIGTVIEAKNAFSEVNIFEPNKTGWQKNQPSLDLNIGLKANVHCSDVFYRLSKLDIKEHNLDVVDMESFALFYLANYFNKKAATILTVSDNLNDHSNDLTAKQREIATLKMYQDVLEKLFTN
>NZ_CP031288.1|WP_045076282.1|989869_990850_-|hypothetical-protein
MFYYATHSVLIQINKLDNKYLIGDQVFEQIPSYILNSLYTSANWNRALKYYCLKGNLVGYYMLNFDIYLDFQTKNISLLTRNSFFTNVINQIQFRTDFLQKVLNHKHRHRLVLDTSFDIDKDFIIKNNPTIFLDILRISSINRFFINKQIDLNKYKFKDIFVLSDKFEFVITNKNQRIYKIPKDQLSIDNKPVFIDLVNYKTYLTTTLNWYHQIVLELEYEDINNINNLKAQLIEIFKNNFTTDLNWHLYNLTLDEIYLASAIKEVFESNSFILSINVLEKTFKKLLINYFFIIFRSKNLINLLKIYIKTDQDTLVFNNLLNRYNK
>NZ_CP031288.1|WP_036428295.1|991703_992639_+|1-phosphofructokinase-family-hexose-kinase
MIYTITLNPAIDCVIETNQIDFNNTNYYSNGYSLIGGKGINVAIILNNLKNDVISTGFLGKNNANQFLDKFLELNLKNHFFLYNGVTRTNFKIKNLNTFDEIELNGVGCDLKLSYLNKLLKYLKDNLKEDDIVIASGSANKSFNDNVYQIIGDLVNKKQALFILDTSKKYLLEGLKAKPFLIKPNISELFAVFNEPISYEFDLIYKKIKQLQSLGARNILLSMASKGSYYFSESNDIYKIGVGQGKLVNSIGVGDSMLAGFVHGLNQQLDIIKTLKYAASCGSSTAFNKWLATKKEINKQLKNIEVKKIER
>NZ_CP031288.1|WP_029333415.1|996996_998886_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MKSNYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDALGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKKQKNLDLITKACTGLVYDDNKSVTGIYLDDEAILNAKAVIITTGTYLKSEILKGIDRYESGPNNEKTTKGISKSLIDLGIKLMRFKTGTPARVYRDSVDLSRAIIEPGTDMKLAFSFSTNTYTSIEKQQPCYLIHSTLETKKIIENNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPETLNGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDVRNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINKGVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDTEWEQYLIYVKEIEQAIKELKEIRFTPKSQLAINLKNKKQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQSIVIEIRFEGYVKKERQLVDKLVKLERKKIPLDINYSKVDNLATEAKDKLEKIRPLNIGQASRITGVNPADTQMLLFYLKKQYPLESIDD

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP031288_2	2.1|358496|23|NZ_CP031288|PILER-CR	358496-358518	23	NZ_CP031288.1	436803-436825	0	1.0

1. spacer 2.1|358496|23|NZ_CP031288|PILER-CR matches to position: 436803-436825, mismatch: 0, identity: 1.0

gtttaaaggtgcaacttcatttg	CRISPR spacer
gtttaaaggtgcaacttcatttg	Protospacer
***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031288_2	2.2|358571|26|NZ_CP031288|PILER-CR	358571-358596	26	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	22502-22527	4	0.846
NZ_CP031288_2	2.2|358571|26|NZ_CP031288|PILER-CR	358571-358596	26	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	22123-22148	4	0.846
NZ_CP031288_2	2.2|358571|26|NZ_CP031288|PILER-CR	358571-358596	26	NZ_CP017832	Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence	125823-125848	5	0.808
NZ_CP031288_2	2.2|358571|26|NZ_CP031288|PILER-CR	358571-358596	26	NC_022879	Enterococcus mundtii QU 25 plasmid pQY182, complete sequence	12569-12594	5	0.808
NZ_CP031288_2	2.2|358571|26|NZ_CP031288|PILER-CR	358571-358596	26	KC821622	Cellulophaga phage phi46:3, complete genome	12094-12119	6	0.769

1. spacer 2.2|358571|26|NZ_CP031288|PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 4, identity: 0.846

aatgtttttaggagcaaaaaacttca	CRISPR spacer
agtgtttttatgtgcaaaaaacttcc	Protospacer
*.******** * ************ 

2. spacer 2.2|358571|26|NZ_CP031288|PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 4, identity: 0.846

aatgtttttaggagcaaaaaacttca	CRISPR spacer
agtgtttttatgtgcaaaaaacttcc	Protospacer
*.******** * ************ 

3. spacer 2.2|358571|26|NZ_CP031288|PILER-CR matches to NZ_CP017832 (Butyrivibrio hungatei strain MB2003 plasmid pNP144, complete sequence) position: , mismatch: 5, identity: 0.808

aatgtttttaggagcaaaaaacttca	CRISPR spacer
cttgtttttaggaacaaaaaactaaa	Protospacer
  ***********.*********  *

4. spacer 2.2|358571|26|NZ_CP031288|PILER-CR matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 5, identity: 0.808

aatgtttttaggagcaaaaaacttca	CRISPR spacer
atattttttaggagcagaaaacttcg	Protospacer
*   ************.********.

5. spacer 2.2|358571|26|NZ_CP031288|PILER-CR matches to KC821622 (Cellulophaga phage phi46:3, complete genome) position: , mismatch: 6, identity: 0.769

aatgtttttaggagcaaaaaacttca	CRISPR spacer
ggagtttttaggagcagaaaacttat	Protospacer
.. *************.*******  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	127991 : 141998	13	Lactococcus_phage(25.0%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP031288|127991:141998|DBSCAN-SWA
TTTATTTAGCTTTTGAACTAGTAGATTTTGTTTTAGTTGTTTTTGGCTTTGAAGCTGTAGATTTTGTTGATTTAGTTGATTTTGAAGTTGACTTTGTAGTTGTAGATTTAGCTTTAGTTGATTTAGCTCTAGTTGATTTTGGTTTTTTAACCATCATTTCATTAACTACTTTTTCTTCAACTTTCATTTCACTTACAGGTTGATCTTGTTCTTGCATTTTGTTTTCTTCACACATGCAATTTTCTTCACAACCGCAAGACTCTTCTTTTAATTTACATTCTTTTTTCTCACAAGATTCTTGTACATCACAAGACATACTCATTTCATCAGATTTCATTTCTTCTAAGTGAGTCATCATTTTTTCATTTCTTTGTTGTTCTAAAAGTTTTTGCATTCTTGGTTTAATAGCTTCTTGCTCTCCACCATAAACAATTTGAATGTTATTTCCTTTTACTAAAGCTCCAGTTGTTCCACCTAAAGATTTAATTCCATCAATATTAGCCTTTTTAGAATCAACAACAGTTAATCTTAATCTTGAAGCACAAGAATCAACATCAACAATATTTTCTTCTCCACCTAAATATTCAATAATAGCAGCAGCTTTTGCTAATCTAGCTTGTTCTTTTTCATCAGTTGATGAACTCATTTTTGAACCATCAACATTTAATCCTTTAGATGCTTTATAATCTGCTTTAGTGTATAATTTAGCTTCAGCATTTCCATCTCTACCTGGTGTTTTAACATTAAATAACTTAATCAAGAAGTAGAATGCAAAGAAGTAAATTGGTGCTAACCCAACAGCAACTATTAATACACCAAATGCTGATAATGGTTTCATAGCTCCACCAATAAATGGAATTACTCCAAATACTATGTAATCAATGATTCCACCAGAAACAGTTTGAGTAATGTGTGTTTGTAAAGCTCCTGTAATTCAGAATGCAATTGAAGCTAATGGCATATGTACACCATAGAATAATCATGGAGCAACAAATAAGAATGTATATTCAATAGGTTCTGTAATACCTGTTAAAAAGCAAGTAAATGCAGCTGAAAAGTAAATACCAAACACTTGTTGTCTATTTTCTTTTGGTGCTGCTAATCACATAGCTAGTGCAGCTGCTGGTAAACCTAATAACATAAATCCAAATTTACCTGATTGGAATCTTCCTAAGTTAATTCCTAGTTTTTCAACATCTGTAAAGTTTAAAATTTTTAAATTAGCAATAACAGCTTGAGAAATTAATTGGTCACCAACTGCACCCCATAATTTATCATTCTTTTTAATTACTTCTACAATTTTATCTAAACTACTATGGCTTGTAGAGTGTAATGCATTATAAGTAGTTACAAATGCAGTTTTAACACTTTCTGGTTGTTTTTGAAGATTTTCAAATCCTTCAGCAATTGAACCTCCAGCACTAGTTCATCATAATGGAGCATAGAACACGTGATGTAGTCCAAATGGAACTAATGAACGTTCAACGATTTCAAAAATTAATGAATCAGTTCCATAAGGCAAAGTACCTGATACTTGACCAAATTTATTTAACCCTAATCCAATAACAGGTCATACAGCCATAAAAATGAATGACAATGGAATAACTGCTACAAAAGTAATAATAGGAACTAATTTTGTACCACTAAAAAAGCTAATAGCAGTTGGTAATTGAGTTTGATGGAATTTGTTATAACATTTAGCAGCAATAGCTCCAACAAATATACCACCTAAAACCCCAGTATTAAGTGATAAGATCCCCATATTAGATCCAGTTAGTGAGCTTGAAACATGTTTATATCATAATAAACTATATTCAGAAACCTTTTCACTTTTAACAACTCCTTGAACAAATAAAGGAGCTTGGATACCATTAAATACTAAAAATCCTACAACAGCAGTAATTGCAGCAACTCCTGAATCTTTAGTATAAGCTAAAGCTACAGAAATACAGAATAACACAGGTAAGTTACCAAAACAAACTTCTCCCATAGTTTTCATAACTGCACCAATAAATCACAAAGTAGATTTTTCAGCTGTATTTGCAGCAATAGCTGCCCCAACTCCTAAAAACACACCAGCAATAGGTAACAAAGCAATAGGTAATAAAAATGCTTTACTTAATTTAGATAAAGTAGGCATAATATTAGCACCAAACGCCTTTAATTTATCTTTAAAATTACTCTTGTTTGTTTGTGTTAACATGAGTATGTTAAATCCTTTCTATAAAAAGGTGTTAATTAGTTTTGTGTTATTATTTTGTTATTAGTGTTATAATTGCTGTTATTATAAATAAAAACCCAATAACTAAAACTAGTAAGTAAAAGTTTTTCTTTGTAAATTCTCAAGCGTTTTTTGATTCTCTGTTTTGTTTTTCAAAAGAATATCGATTTTTATTTTTTTGTCTTCAATATAAAAATAAGCCAAGTAAAATAAAAAAAGCACCAAATACCAATACTCCTAATTGGATTACTAACTCTGCTTTAACTACTAAAATTAATAACATAAAAATATTTGCACACCTCTTTATAATGGTATAACAAAAAAAAAGAAGTTTAATTTGCATAAATTAAAATTTTGTATTTTAATGCAATTAATACTTCTTTTTTATTTAAACTAGTACAATTAAGAACTTATTAAAGAATAATCAGTCTAAATATAATTGATTTAGTTCATCTAAATTTTCAGCTTTTTCTAAAATAAAAAAGATTAAATCATTAGCTAAAAGTTGTTGATTATTCATATAATCTGTTAAGTTTTTATAATCATTTAAATTAGATTTAAATTTATTAATATCAGTAATTAGATCAGTTGATTTTAAAATAGTAATTGGAGTTTTATTTTTATTAAAATCAAAATTTTTAAAAGTCACACCTATTAGAAAAAAACCTTTTTGATCTAAAGTATTTATTTGATCTCAATCATATGATTGACGAGTTGATAAAATATTTTGAACTTTTTTAGAATTATTTTTGTCTTTTAATTTTGAATGATATTTTAAAGCACAAGTTGCTCCATATGATGAAACAATTAAACCAATAAGACCTAAAACTAAAATTAAATAAACTGCTCAAGTTGGTATATGACTAGTAGTTTGTTGACTAAATATAATCATTATTTATAATCTCTTAATTCTTTTCTTTCTGTATCTCTTTTTTTAATAGTTTGTCTTTTATCATGGAGCTTTTTACCTTTAGCTAAAGCGATTTCTAATTTAACATAATCATTTTTAAAATATAGTTTGACAGGAATAATTGTTAGATTTTCTTGTTTTATTTTATTTAATATTTTAATTATTTCTTTTTTATGTAATAACAGTTTTCTAGTTCTAGTTTCTTCTAAGCCTTTAATATAATTAGCAAACTGGTATTTTTTAACATTCATATTTAAAATATAAATCTCTTTTTTTCTAATTAAAACAAAAGCTTCATTAATAGAAACATCATGATTTCTGATTGATTTTATTTCCGGACCATTTAAAACAATTCCTGCTTGATAAGTTTGAATGATTTCATAATTAAAATAAGCTTTTTTATTTTTAATAATTAAATGTTCAGACATAAAAACCTCTTATTCTATTAAAACAAAATCAATTGTTCTTTTTTTAATATCAACATTAATTAGTTTAACTTTGACTTTTTGACCCATTCTATAATAAGTATTATCAGGTTTAATTAAAATACGGTTAGTTTCATCATAAACTAAATCACTATTCATATTTGAAATATGAACTAATCCTTCAACTAAATTATCTAATTGAATAAAAATTCCAAATTTTAAAACTGCTGAAATTGTTGCTGTATAAGTATTATCGACTTTATTTAGCATATATTCACACATACACGCTTTAATAACTTCTCTTTCACATTCAACACTTTTAGTTTCAGTATCATTAATAATATTACTTACTTTATTAACATAATTTGTATTATTTTCTAAACTAGTTTTTTCTAGATCTTTTGTAATTAGATATTGTTTTAGATATCTATGAACTAATAAATCTGAATATCTTCTAATTGGAGAAGTAAAATGAGTATAACAATCACTAGCTAAACCAAAATGACCAATATTTTCTAATCCATATTTAGCTTTATCCATATATCTTAATAAAGAAATATTTAATAATTCAACTTCAGTTTCATCTTTAAGTTGTTCTTTAATTTGACTTAAAGTGTGATTGATAAATATTGGATCTAAAACTTGTTTATTAGTTAATTTAGGATTAATTCCAAATGTCTTTAGTGATTTATACCAATTAATTAGTTCATCTTCATCTGGTTTATTATGATTTCTATATAAAAAAGGTAAATCTTTTTGATAGATTAATTCAGCTACTGCTTCATTACAACTTACCATAAATTGTTCAATTAATTTTTCAGCTTGATCAGCTGTTTTTGTTTTAATATCAATTACATTTAAATTTTTATCTAAAATAATTTTTGGCTCTCTAACATCAAAACTAATAGTTCCTTTTTTAGCTTTTAGATCTTCTAGTTTTTTATACAATTCATAAGCTATGTCTAACATTTTTTTAGTTTTATCATCATGAGTTCAAGTTTTAGTTTTAAAGTAATTATTTACTTCGTCATAATTTAATCTAGCTTTAGAAATAATCACTGATTCATAAACTTTTTTAATTAACATGTTTGCGTTATTATCAAATTCCATTTCACATACAAAAACTAATTTTTTAGTATTTGGATTTAATGAACACAAATCATCAGATAAAATGTTTGGTAACATTGGAATTGCTTTATTTGCTAAATAAGTCGAATTACCTCTTAATAAAGCTTCTTTATCTAAAGCGGTCTTGTATCTAACAAAATAAGAAACATCAGCAATAGCAACAAATAGTTTATAATTATTGTTTTCTAATTTTTCAACACAAATTGCATCATCTAAATCTTTTGAATCAATTCCATCAATTGTAACGATCGTTTTATTAACTAAAGAATTATTTTGTCTTTTTAAAAATTCTTTTTCTAGTTTATCAGTTGATAAATTAATTTGTTTTGCATTATCTAGAGTTTGTTTATCAAAACTAGTTTTTATGTCAAATTCTTCAGCTATTGCTAAGATGCGATCACTTGCTTTTTTACTATTGCCAATAATTCTTATAAGTCTTATAAAAATTTTACGTTCTTTACAACTTATAATTTTTGCTTTAATAATATTGAATTCTTCATATTTAAATTCGTTCTTATTAACAATTACAAATCTAAAACTATCAAATGACTTATCGTTTGGAATGAAATCTAAAAATCTTTTATCAAAACTTCTATTTATTTCACCAATTAAATAAACTTTATTTCTTTTAATTAGATCAATAACTATAGCTTTTAATCTATTATCTTCTTCTTGTTTTAAAATATAAACTACTTCATCTTGGTGAATACTATTATTTAGATCAACTCCAGCTATAAAATGATCTTCATCATTAATTTTATTAATATCATTTATAAATCCAAAACCTTTTGGATTTAGTTTAATAGTTCCCTTTTTATAAATTTGATCTAATAAGTAAATATTATTTTCTAATGAAATAGTGATTTTATTATTTTTTTCTAATTGGTCTAAGTAGTTTTTAATTAATGAATAATCTAAAGCATTAAAATAAGTCAATAGTTTATTTAAACTAACTTTATGTTTGTTAGTTTTTAAAATTTCAATAATTTTAGATTCCATACTACTCCTTTTTAAATAAAAAAATAAACACTATTTTATAACATAGTGTTTGTAATTATGCTTATTGTTAATGCTATTATAAAAAATATAATTCCTAAAACCAGCATTCAAATAGAAAGAGTTTTATCTAATCCACGTTCTTTTGAATTAGAAAACAATTCTTCGTTTCCACCATTTAAAGCACTTAGTCCAGTTTGAGATTGTTTATTTTGTAATAAACCTATAGCGATCATTATAAATGCAATAATGAAAATAAAGATTTCAAAACCTAAGATTAGTTGTTGAGCTAATTTGGTTGTTGAAGCTAATAGATTTATCATAAAAACCTCCAAAATGTTACTGTATAATAATATCTTAAAATAAGTTAAATTTGAATAAATACTCCTAATCATTAAATAAATATCTTTTTATTCCATAGCATAAAATTAATAAAAAATCTATTAAAAATCCTACTTTTTTAATTTCTGAAAAATGTTTTTTTAGATGAAATACTTTTTAAGTGGTTAAAAATTTACAGGCTTAAATTTATAATATAATGAGTTTACACGACAAAAAATGAAAGGATAAATTACAATGGCTAAAGAACAAAAGTATTATCAAGAATCAGTTTCTCCAATTGAATTTGTTAAAAATGATTTCAAAGGAAATTTAAGATCAGTTAATTGAAATGTCATTAATGATGAAAAAGATTTAGAAGTGTGAAATAGAATCACTCAAAACTTTTGATTACCAGAAAAAATTTCAGTATCAAATGATTTGCCATCATGAAGAAGTTTATCTGCTGAATGACAACAATTAGTTACTAGAACTTTTACAGGTTTAACTTTATTAGATACAGTTCAAGCAACAGTTGGAGATGTTGCTCAAATTGAACACTCACTAACTGATCATGAACAAGTAATTTATTCTAATTTTGCTTTTATGGTTGGTGTGCATGCTCGTTCTTATGGAACTATTTTTTCAACATTATGTTCAAGTGAACAAATAGAAGAAGCACATGAATGAGTTGTTAAGACTGAATCATTACAAAAAAGAGCAAAAGCTTTAATTCCTTATTATGCTGGAACTGATCCATTAAAATCTAAAGTAGCTGCTGCTTTAATGCCTGGATTTTTATTATATGGGGGATTTTATTTACCATTTTATTTATCTTCTAGAGCTAAATTGCCAAATACTTCAGATATTGTAAGACTAATTTTAAGAGATAAAGTAATTCATAATTACTATAGTGGTTATAAATATCAAAAAAAAGTAGCTAAACTATCAGTTGAAAAACAAGCAGAAATGAAAGAATTTGTTTTTAAATTATTATATGAATTAATTGATTTAGAAACTGCTTATTTAAAAGAGTTATATGCTGGTTTTGATATTGCTGATGATGCTATTAGATTTAGTGTATATAATGCTGGTAAGTTCTTGCAAAACCTAGGATACGATTCACCATTTAGTGAAGAAGAAACTAGAATTGAACCAGAAATTTTTAATCAATTATCTGCAAGAGCTGATGAAAATCACGATTTCTTTTCTGGAAATGGTTCTTCATATGTGATGGGAGTTTCAGTTGAAACAGAAGATGAAGATTGAGAATTTTAGGAGTATATTATGCATTCAAATGTTAAAAAGGTTACAGATAAAGATGTAATTAAACCAGTTGGTGTGCCTTTTGTAGTTTATTTTTCTTCAATTTCAAATAATACACACAGATTTATTCAAAAACTAGAAATAGAAAATTTAAGAATCCCTTATGAAATAGAACAATCAATTAGTGTTGATCGTGATTATGTTTTAGTTACACCAACTTATAGTGGTGGGGGAGAGTATGTTAAAGGTGCAGTACCAAAACAAGTAATTAAATTTTTAAATAATAAGCAAAATAGAAGTTTTTGTAGAGGAGTTATATCATCTGGTAACACTAATTTTGGTGATACTTTTGGAATTGCTGGACCAATTATTTCTAAAAAATTAAATGTTCCTTTTTTATATCAATTTGAATTATTAGGAACACAACATGATGTTAGTCAAATAAAACAAATACTATTTAAGTTTTGAGAGGATGGCAATAATGAACGAAAATAAAAGCACAATCGTTTTAGATGATGTTGATGATGAATATATTAAATTAAATGCTAGATCTAAGATCTTTTCAAAAGATCAAGATAATTTTCAATTAGATGTTAAAGCAGCTGAATTATATTTAAAAAACTATATTGAACCTAGAATGAAAAAGTTTTCTAGTCTAAAAGAAAGATTAGATTATTTATTAGAAAATCAGTATTATGATTCAGAAATTTTAAATAAATATAGTTTTGATCAGATTAGTCAATTAAATGATTATGCTTATTCATTTAACCATCATTTTCCAAGTTTTATGGGAGCTTTAAAATTCTTTAATGCTTATGGATTAAAAACTTTTGATACTACAATGTATTTAGAAACTTATACAGATAGAGTATTAATGAATGCTCTATTTTTAGGTAATGGTAATTTTAATAAAGCAAAAAACTTATTAAAAGATATGATGTTAGGTAGATTTCAACCAGCAACCCCTACTTTTTTAAATGCAGCTAAAAAACATAGAGGAGAGTATGTTTCATGTTATTTATTAAGAACAGAAGATAACATGGAATCAATTTGTAGAACAATTTCAACTTCATTACAACTTTCAAAAAGAGGTGGAGGAGTTGCGATTTGTTTAACAAATTTACGAGAAACAGGCTCACCAATTAAAAATATTTCAGGCCTAAGTTCAGGACCAATTCCAGTAATGAAGATTTTAGAAGATTCATTTACTTATGCTGATCAATTAGGTCAACGTCAAGGAGCTGGAGCTGTTTATATTTCAGCTCATCATCCAGATATTATTTCAGTTTTAGATACTAAAAGAGAAAATGCTGATGAAAAGATCAGAATTAAATCTTTATCATTAGGATTAGTAATTCCAGATATTACTTTTGAATTAGCTAGAGATAATAAAGATATGGCTTTATTTAGTCCTTATGATGTTCAAAAAGTATATGGTAAGCCATTATCAGATATTTCAATTACTGAAAAATATTATGAAATGTTAGAAAATCCTAATATTAAAAAAACATATATTAGTGCTAGAAAATTCTTTTTAACTGTTGCTGAATTACATTTTGAAAGTGGATATCCATATATTTTATTTGAAGATACTGTTAATAGAAGAAATGCTCATGATAAAAAAGGAAGAATTATTATGAGTAATTTATGTAGTGAAATTGTTCAAGTAAGTACAGCAAGCGAATATAGTTCTGATTTATCATTTGTAAAAACTGGAGAAGATATTTGCTGTAATTTAGGTAGTTTAAATATTGATAATATGATGAAATCAGGAAAAGAATTTTCAGATTCTATTTATAATGCTATATCTGCTTTAGATATTGTGTCAAGAAATTCAGATTTGAGTGCGTCTCCTTCAATTAAAAAAGGAAATGCTGAAAATCATGCTGTTGGATTAGGAGCTATGAATTTACATGGATTTTTAGCAACTAATAAAATTATGTATGACTCACCTGAAGCTGTTGATTTTACTAATATGTTTTTTTATACAGTTGCTTATAATGCTTTTAAAGCTTCAAATAAATTAGCTCAAGAATTTGAAAAATTTGCTTCATTTGATCAATCAAGATTTGCTGATGGTTCTTGATTTGATAAATACACTAAATGTGAATTTGATAAATGAACACCACAAACAAATAGAGTAAAAGAATTATTCAAAGATTATGATGTTCAAATTCCAAGTCAATCTGATTGAATTCAATTAGTTGAAGAAATTAAAAAAACAGGTTTAGCAAATTCACATTTAATGGCAGTTGCTCCAACTGGATCAATTAGTTATCTATCATCATGTACTCCTTCACTACAACCAGTAGTTTCAACAGTTGAAGTTAGAAAAGAAGGAAAATTAGGAAGAGTTTATGTTCCAGCATATCAAATTAATTTTGATAATATGGGATATTATGCAATGGGTGCTTATGAATTAGGACCAGATCCAATTATTAATATTGTTGCAGCAGCTCAACAACATGTTGATCAAGCAATTTCACTAACTTTATTTATGACTGATAAAGCAACAACTAGAGATTTAAACAGAGCATATGTTAATGCCTTTAAACAAGGTTGCTCTTCAATTTATTATGTAAGAATTCGTCAAGATGTTTTAGAAGATAGTGAAAACTATGAATGTGATGCATGTAAAATTTAAAAAAAATTAATATCTGAAAAGACAAATTAATTTACAATATTTGACAAATACAACTAGGCTATGTTACATTAAAAATATAAATATCTTGTATATTTATAAGATTGGCAGTGTGGTTCTTGCTGGCTCTGGGTGACGAGAGATCCCGAAATCAAGAGATTGAACCAAAAAACAACTCTTTTTATAAGAGTTGTTTTTTTATCTTTTTTGCTTTTTGTTTTTAGTGCAAAACAAGGTTATTAATAATTGCTTTTTTGTTATTATTATTTATGAAATGAGGTAATTATGGATAATAAAGATATTTATGTTTTTGGTCTTTCAGCAAGTCAGCAATTAGCAAAAGAAGTGTGTCATTTTTTAGGTGTTGAGCAAAAAGTTGTAAAAACTACTAGATTTGCAGATGGTGAAATTTTAGTTGAATCAATTGATTCAGTAAGAGGAAAAGAAATCTATGTCATTCAGTCAACATCAATGCCAGTTAATGAAAATTTAATGGAATTATTAATTGCTATTGATGCTTTTAAAAGAGGTAGTGCAGAAAAAATTAATGTAGTTATTCCTTATTATGGGTATGCAAGACAAGATAGAAAATCAAAAGGTAGACAGCCAATTACAGCTAAATTAGTAGCAGATTTACTAACAAAAGCAGGAGCTGATCGTGTAATTGTTTTTGATATTCACTCTACTCAAGCAATGGGATTTTTTGATGTACCAATGGATAATTTCCACACTTCACAAAGTTTAGCAAATGAAATAGTTGATACTATTATTAGAGAAAAATTTGATCCTGAAAAATGTATTTTAGTATCACCAGATTATGGAGGATTAAATAGAGTTCATAAAGTGGATTCATACACAACTAATATGACTAATGGCATTGCTGTTATTGGAAAAAGAAGATCTGAACCTAACAAAGCTGAAGTTGAATTTGTTTTAGGAGATATTGACGGAAAGACTTGTTTTATAATAGATGACATGATTGATACTGGTGGAACTATTATTAGTGGGGCTAAAGCATTAAAAGCAAATGGAGCAAAAGATGTTTATATTTTTGCTTGTCATGGTTTATTTAATGGTCCTGCTAAAGAGAGAATGACCCAAGCTATTAAAGATGGCATTGTAAAAAATGTTGTTGTAACTAATACTGTTGAAATTCCACAAGAAAGACATTTTGAGGGACTAAAAATTGTTTCAGTTGCCCCATTATTAGCAAATATGATTAAAGAATCACAAGAGCATCATTCTTTAACAGAAGTTTATAATAAAAACAAAGATGAAATTCAGTTAAAAATTCAAGATTTCATGAATAATAAAAATTAAATTAGTGTTAAGAATTTATAGCATTTATTAAATAATTTGAAAAAAGTTTGACTTGTTATATAAAAACATTAAATTCTATTAGTTGCTAAAATAATATAAAAATTAAAGTGTCGTCTTTTTTATAAGACATATTTGTCTTATGTATGAATAATTTTTTAAATAAATAAAAGAATAATAAATCTATTGTTATAATCTAAAAAACTATTAATTGTATTTATTAAAACAATATATATAAAAAGTAGATTTTGAAGTTATAACCAATAAACTAACTATTAAAATTAAAGATTTTATAAATAAGGAAAGTTAATGAAAGTAATAATTGGATTAGGAAATATTGGAAAAGAGTATGAAAAAACTAGACATAATGCTGGTTTTATAGCTATTGATCTTTTATTAGAAAAATACAAATATAATTCTATAAAAGAAGAATTTAATTCACTAGTTTATACATCTATTATTAATAACCAAAAAGTGTTGTTTGTAAAACCTTTGACTTTTATGAACAATTCAGGATTAGCAGTTAGACAAATTATTAATTTTTATAAAATAGATTTAAATGATCTAATAGTTATTCATGATGATAAAGATCTAAACATATCTAGAATCCAATTTAAAAAAGATGGTTCATCAGCAGGACATAATGGAATTAAATCAATTATTAATAATTTAAACACACAAGACTTTTATAGATTAAGAATTGGAATAAATAAACCAGCAAATCAATGAAAAATAGTTGATTGAGTATTATCAAAGTTTAGCGATGATGAATTAAATTTATTAAAAGAATCTTTTAATAATAAAAGTGAATTTATAAATGATTTTACTAATAATAAAACTTTTACTTATTTAATGAACAAATATAATTAGACTTCGTATTAAACGAAGTTTTTTATTATTATTTTTATTATTAATTAGTAAAAATATTTTAGTCTTGTTATTGTAGATTACTAATTAGGAATATTAAAAAGGATATTGTTATAATAAGATTAACAAAAGAAAGGTTCTTATTATGAAAGTTATATTTTTAAAAGACGTACCAGGTCAAGGTAAAAAAAACGAAATAAAAGAAGTTAGTGACGGGTATGCTAGAAATTATTTGTTACCAAATCAATTAGTAAAAATTGCTACAAATAATAGTGTTAAAACTTTAAAAGAGCATTTAAAAGCAGATCAAGAAGAAAAAGAATTAGCAAAAGCTCAAACTAAACAAATTAAAAAAACTCTTGAAGAATTAACACTTCATTTTAAATTACAAACTAATGATGATAAAGTATTTGGAAGTATTTCAAGTCAAGATATCGTCAATCAATTAAAAGATCTTCATAGAATTGAACTAGGCAAAAAGAAATTTATTCGTTTTAAAAATATTAATAAAATTGGAATTAATTATATAAAAGTAAAACTTGACTTTGGTATTGAAGCAATAATCAAAGTTGATGTTAAGGAAGTTTAAAATGAAAAAAGAATTATCAATTACAGAATTACTATACGCAGAGCGCTTTGTTTTAGGTGTAGCTATGAGTTTTTCTAATGCTCTTGCAGATATTATTTCAGTTTTAAAAGTTGATGATTTTTCAATTGAAGCAAATAAATATATTTATCAAGCAATTATAGATTTAAATAGTAAAAATAAGTCTATTTCTCCAATTTCAGTAATTAATAGATTAGAAGCTATTAATAAATTAGATAGAGTTGGTGGAGATGTTGTTGTTTATGAAATAGCTGCTGAAAATTATACAGATCAAGGTTTAGAAGAATATATAGATGTTATTCATAAATCTGGAGTTATTAGAAAACTTGATGCAGTTATTAAAGAATTAGAATTAAAAAGAAATAGTGGAAATACTGATATTGATGAATTATTAAAAGTTGCTCAAACTAAACTTTTAGATATTGATCTTTCTATTAAAAGATTTGAAATTGAAGCTGTTGGTGATGTTGCTAAAAGAGTTGTTGAAAAAATTAAAGAACTTGAAATGAAAGCCGAGATTATTTCAGGAGTTCCAACTGGATATAATTATTTAGATTTAATTACTTCAGGTTGACAAGAATCAGATTTTATTATTTTAGCTGCTCGTCCTAGTGTTGGAAAAACTGCTTTTTCTTTAAACTTAGCTTTTAATGCGGCTATGAAAAAATATCCTGTTGCTTTTTTTTCACTAGAAATGCCTGCTGAACAATTAACTCAACGTTTATTTACTAGACTTACAAGTATTGATTCAACTAATTTAAGAACAGGTAAAGGTTTAAGCAAACTTAATTGAGAAAGAATTCAAGCAACTAAAGAAAAATTAGAAGATATTCCAATTTATATTGATGCTACTCCCGGTATTTCAACTCAAGAAATTAGATCTAAACTTTATAAAATGAAAAGAGATCATGATATTAAATTGTGTGTAATAGATTACTTACAATTAATAGTTGGTTCACAAAATAAAGATAGACAAAATGAAGTTAGTGAAATTTCAAGACAATTAAAACAAATTGCAAGAGAAACTTCAATTCCAATTATTTGTCTATCACAATTGAGCCGTAGAGCTGAAACTAGAGAAGATAAACGTCCTATGCTTTCAGATTTAAGAGATTCTGGAGCTATTGAACAAGATGCAGATATTGTTGCATTTTTATATCGTGATGACTATTATAAAAAAGATCAATCTGATAATCAGTCTAATTTAGAAAAAGAAAAAACTGAGTTAATTTTAGCAAAACACAGAAACGGTGCTACTGGAACAGTCTTTTTAAGATTTATTAAAGATTTTGGTGTGTTTAGAGATTGATAA

Protein sequences of DBSCAN-SWA_1

>NZ_CP031288|127991:141998|138141_139215_+|WP_142796118.1|DBSCAN-SWA
MLFCYYYLWNEVIMDNKDIYVFGLSASQQLAKEVCHFLGVEQKVVKTTRFADGEILVESIDSVRGKEIYVIQSTSMPVNENLMELLIAIDAFKRGSAEKINVVIPYYGYARQDRKSKGRQPITAKLVADLLTKAGADRVIVFDIHSTQAMGFFDVPMDNFHTSQSLANEIVDTIIREKFDPEKCILVSPDYGGLNRVHKVDSYTTNMTNGIAVIGKRRSEPNKAEVEFVLGDIDGKTCFIIDDMIDTGGTIISGAKALKANGAKDVYIFACHGLFNGPAKERMTQAIKDGIVKNVVVTNTVEIPQERHFEGLKIVSVAPLLANMIKESQEHHSLTEVYNKNKDEIQLKIQDFMNNKN
>NZ_CP031288|127991:141998|127991_130193_-|WP_045076037.1|DBSCAN-SWA
MLTQTNKSNFKDKLKAFGANIMPTLSKLSKAFLLPIALLPIAGVFLGVGAAIAANTAEKSTLWFIGAVMKTMGEVCFGNLPVLFCISVALAYTKDSGVAAITAVVGFLVFNGIQAPLFVQGVVKSEKVSEYSLLWYKHVSSSLTGSNMGILSLNTGVLGGIFVGAIAAKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSFIFMAVWPVIGLGLNKFGQVSGTLPYGTDSLIFEIVERSLVPFGLHHVFYAPLWWTSAGGSIAEGFENLQKQPESVKTAFVTTYNALHSTSHSSLDKIVEVIKKNDKLWGAVGDQLISQAVIANLKILNFTDVEKLGINLGRFQSGKFGFMLLGLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFVAPWLFYGVHMPLASIAFWITGALQTHITQTVSGGIIDYIVFGVIPFIGGAMKPLSAFGVLIVAVGLAPIYFFAFYFLIKLFNVKTPGRDGNAEAKLYTKADYKASKGLNVDGSKMSSSTDEKEQARLAKAAAIIEYLGGEENIVDVDSCASRLRLTVVDSKKANIDGIKSLGGTTGALVKGNNIQIVYGGEQEAIKPRMQKLLEQQRNEKMMTHLEEMKSDEMSMSCDVQESCEKKECKLKEESCGCEENCMCEENKMQEQDQPVSEMKVEEKVVNEMMVKKPKSTRAKSTKAKSTTTKSTSKSTKSTKSTASKPKTTKTKSTSSKAK
>NZ_CP031288|127991:141998|139521_140082_+|WP_036428422.1|tRNA|DBSCAN-SWA
MKVIIGLGNIGKEYEKTRHNAGFIAIDLLLEKYKYNSIKEEFNSLVYTSIINNQKVLFVKPLTFMNNSGLAVRQIINFYKIDLNDLIVIHDDKDLNISRIQFKKDGSSAGHNGIKSIINNLNTQDFYRLRIGINKPANQWKIVDWVLSKFSDDELNLLKESFNNKSEFINDFTNNKTFTYLMNKYN
>NZ_CP031288|127991:141998|131102_131549_-|WP_019269126.1|DBSCAN-SWA
MSEHLIIKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKKYQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPVKLYFKNDYVKLEIALAKGKKLHDKRQTIKKRDTERKELRDYK
>NZ_CP031288|127991:141998|130242_130494_-|WP_036428416.1|DBSCAN-SWA
MLLILVVKAELVIQLGVLVFGAFFILLGLFLYWRQKNKNRYSFEKQNRESKNAWEFTKKNFYLLVLVIGFLFIITAIITLITK
>NZ_CP031288|127991:141998|134246_135266_+|WP_019269128.1|DBSCAN-SWA
MAKEQKYYQESVSPIEFVKNDFKGNLRSVNWNVINDEKDLEVWNRITQNFWLPEKISVSNDLPSWRSLSAEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHEWVVKTESLQKRAKALIPYYAGTDPLKSKVAAALMPGFLLYGGFYLPFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYKYQKKVAKLSVEKQAEMKEFVFKLLYELIDLETAYLKELYAGFDIADDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQLSARADENHDFFSGNGSSYVMGVSVETEDEDWEF
>NZ_CP031288|127991:141998|133708_133993_-|WP_013729883.1|DBSCAN-SWA
MINLLASTTKLAQQLILGFEIFIFIIAFIMIAIGLLQNKQSQTGLSALNGGNEELFSNSKERGLDKTLSIWMLVLGIIFFIIALTISIITNTML
>NZ_CP031288|127991:141998|130599_131103_-|WP_019269125.1|DBSCAN-SWA
MIIFSQQTTSHIPTWAVYLILVLGLIGLIVSSYGATCALKYHSKLKDKNNSKKVQNILSTRQSYDWDQINTLDQKGFFLIGVTFKNFDFNKNKTPITILKSTDLITDINKFKSNLNDYKNLTDYMNNQQLLANDLIFFILEKAENLDELNQLYLDWLFFNKFLIVLV
>NZ_CP031288|127991:141998|131558_133673_-|WP_036428418.1|DBSCAN-SWA
MESKIIEILKTNKHKVSLNKLLTYFNALDYSLIKNYLDQLEKNNKITISLENNIYLLDQIYKKGTIKLNPKGFGFINDINKINDEDHFIAGVDLNNSIHQDEVVYILKQEEDNRLKAIVIDLIKRNKVYLIGEINRSFDKRFLDFIPNDKSFDSFRFVIVNKNEFKYEEFNIIKAKIISCKERKIFIRLIRIIGNSKKASDRILAIAEEFDIKTSFDKQTLDNAKQINLSTDKLEKEFLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYKLFVAIADVSYFVRYKTALDKEALLRGNSTYLANKAIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANMLIKKVYESVIISKARLNYDEVNNYFKTKTWTHDDKTKKMLDIAYELYKKLEDLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAELIYQKDLPFLYRNHNKPDEDELINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQLKDETEVELLNISLLRYMDKAKYGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLITKDLEKTSLENNTNYVNKVSNIINDTETKSVECEREVIKACMCEYMLNKVDNTYTATISAVLKFGIFIQLDNLVEGLVHISNMNSDLVYDETNRILIKPDNTYYRMGQKVKVKLINVDIKKRTIDFVLIE
>NZ_CP031288|127991:141998|140224_140668_+|WP_019269133.1|DBSCAN-SWA
MKVIFLKDVPGQGKKNEIKEVSDGYARNYLLPNQLVKIATNNSVKTLKEHLKADQEEKELAKAQTKQIKKTLEELTLHFKLQTNDDKVFGSISSQDIVNQLKDLHRIELGKKKFIRFKNINKIGINYIKVKLDFGIEAIIKVDVKEV
>NZ_CP031288|127991:141998|135275_135749_+|WP_019269129.1|DBSCAN-SWA
MHSNVKKVTDKDVIKPVGVPFVVYFSSISNNTHRFIQKLEIENLRIPYEIEQSISVDRDYVLVTPTYSGGGEYVKGAVPKQVIKFLNNKQNRSFCRGVISSGNTNFGDTFGIAGPIISKKLNVPFLYQFELLGTQHDVSQIKQILFKFWEDGNNERK
>NZ_CP031288|127991:141998|135726_137898_+|WP_142796117.1|DBSCAN-SWA
MAIMNENKSTIVLDDVDDEYIKLNARSKIFSKDQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLENQYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYLETYTDRVLMNALFLGNGNFNKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMALFSPYDVQKVYGKPLSDISITEKYYEMLENPNIKKTYISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFVKTGEDICCNLGSLNIDNMMKSGKEFSDSIYNAISALDIVSRNSDLSASPSIKKGNAENHAVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQSDWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINFDNMGYYAMGAYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRIRQDVLEDSENYECDACKI
>NZ_CP031288|127991:141998|140669_141998_+|WP_036428424.1|DBSCAN-SWA
MKKELSITELLYAERFVLGVAMSFSNALADIISVLKVDDFSIEANKYIYQAIIDLNSKNKSISPISVINRLEAINKLDRVGGDVVVYEIAAENYTDQGLEEYIDVIHKSGVIRKLDAVIKELELKRNSGNTDIDELLKVAQTKLLDIDLSIKRFEIEAVGDVAKRVVEKIKELEMKAEIISGVPTGYNYLDLITSGWQESDFIILAARPSVGKTAFSLNLAFNAAMKKYPVAFFSLEMPAEQLTQRLFTRLTSIDSTNLRTGKGLSKLNWERIQATKEKLEDIPIYIDATPGISTQEIRSKLYKMKRDHDIKLCVIDYLQLIVGSQNKDRQNEVSEISRQLKQIARETSIPIICLSQLSRRAETREDKRPMLSDLRDSGAIEQDADIVAFLYRDDYYKKDQSDNQSNLEKEKTELILAKHRNGATGTVFLRFIKDFGVFRDW

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045076037.1|127991_130193_-	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	4.7e-08	44.2
WP_036428416.1|130242_130494_-	hypothetical protein	NA	NA	NA	NA
WP_019269125.1|130599_131103_-	hypothetical protein	NA	NA	NA	NA
WP_019269126.1|131102_131549_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.8e-21	39.2
WP_036428418.1|131558_133673_-	ribonuclease R	Q0GXV6	Lactococcus_phage	7.8e-61	32.6
WP_013729883.1|133708_133993_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_019269128.1|134246_135266_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A160DHK0	Gordonia_phage	8.0e-96	53.7
WP_019269129.1|135275_135749_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	3.0e-13	35.0
WP_142796117.1|135726_137898_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.9e-164	44.4
WP_142796118.1|138141_139215_+	ribose-phosphate diphosphokinase	A0A0K1YAT7	Cronobacter_phage	2.7e-17	28.1
WP_036428422.1|139521_140082_+|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_019269133.1|140224_140668_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_036428424.1|140669_141998_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.0e-71	38.7