CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP035503	Rhodoferax sp. CHu59-6-5 chromosome, complete genome	3 crisprs	PD-DExK,DinG,WYL,Cas9_archaeal,DEDDh,csa3,RT	1	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP035503_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035503_1

1412644-1412746

Orphan

Consensus_repeat	Method
GGCATCGGCTTTGGCGGCCTTGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035503_1

>merge|NZ_CP035503|1|1412644-1412746|CRISPRCasFinder
GGCCGCCGGTTTGGCGGCATCGGCTTTGGCGGCCTTGGCTGCTTTGGCCGCTTTGGCGTCATCAGCCTTCTTTTTCTTGGCATCGGCTTTGGCGGCCTTGTCT

>NZ_CP035503|1|1|1412644-1412746|CRISPRCasFinder
GGCCGCCGGTTTGGCGGCATCGGCT	TTGGCGGCCTTGGCTGCTTTGGCCGCTTTGGCGTCATCAGCCTTCTTTTTCTT
GGCATCGGCTTTGGCGGCCTTGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035503.1\|WP_142818169.1\|1408857_1409832_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP035503.1\|WP_142818173.1\|1414477_1414768_-\|DUF1049-domain-containing-protein	unknown	unknown	gnl\|CDD\|377648
NZ_CP035503.1\|WP_168226708.1\|1401394_1401547_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035503.1\|WP_142818170.1\|1409871_1410990_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP035503.1\|WP_142818180.1\|1421081_1422188_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_CP035503.1\|WP_142818164.1\|1400249_1400933_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP035503.1\|WP_142818166.1\|1401707_1405439_+\|5-oxoprolinase	unknown	unknown	gnl\|CDD\|215358
NZ_CP035503.1\|WP_142818172.1\|1413324_1414488_-\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|236983
NZ_CP035503.1\|WP_142818168.1\|1407025_1408771_+\|DNA-alkylation-response-protein	unknown	unknown	gnl\|CDD\|173843
NZ_CP035503.1\|WP_142818175.1\|1417079_1419089_-\|bifunctional-3-phosphoshikimate-1-carboxyvinyltransferase/cytidylate-kinase	unknown	unknown	gnl\|CDD\|237003
NZ_CP035503.1\|WP_142818167.1\|1405523_1406060_+\|damage-inducible-protein-DinB	unknown	unknown	gnl\|CDD\|225200
NZ_CP035503.1\|WP_142818163.1\|1399044_1400115_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NZ_CP035503.1\|WP_077560551.1\|1415215_1416901_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NZ_CP035503.1\|WP_142818176.1\|1419089_1419968_-\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|237820
NZ_CP035503.1\|WP_142818165.1\|1401123_1401405_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035503.1\|WP_142818181.1\|1422184_1422754_-\|DUF2059-domain-containing-protein	unknown	unknown	unknown
NZ_CP035503.1\|WP_142818178.1\|1419995_1421078_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|223155
NZ_CP035503.1\|WP_142818183.1\|1422750_1425396_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP035503.1\|WP_142821136.1\|1406007_1406928_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176139
NZ_CP035503.1\|WP_142818174.1\|1414813_1415128_-\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|178925

Protein	Function_ID	Function_description	E-value
NZ_CP035503.1\|WP_142818169.1\|1408857_1409832_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	4.20543e-152
NZ_CP035503.1\|WP_142818173.1\|1414477_1414768_-\|DUF1049-domain-containing-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	4.98769e-11
NZ_CP035503.1\|WP_077560551.1\|1415215_1416901_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP035503.1\|WP_142818174.1\|1414813_1415128_-\|integration-host-factor-subunit-beta	gnl\|CDD\|178925	PRK00199, ihfB, integration host factor subunit beta; Reviewed.	3.47508e-50
NZ_CP035503.1\|WP_142818180.1\|1421081_1422188_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_CP035503.1\|WP_142818164.1\|1400249_1400933_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.57838e-46
NZ_CP035503.1\|WP_142818166.1\|1401707_1405439_+\|5-oxoprolinase	gnl\|CDD\|215358	PLN02666, PLN02666, 5-oxoprolinase.	0
NZ_CP035503.1\|WP_142818172.1\|1413324_1414488_-\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|236983	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.	8.14171e-151
NZ_CP035503.1\|WP_142818168.1\|1407025_1408771_+\|DNA-alkylation-response-protein	gnl\|CDD\|173843	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.	1.4611e-144
NZ_CP035503.1\|WP_142818175.1\|1417079_1419089_-\|bifunctional-3-phosphoshikimate-1-carboxyvinyltransferase/cytidylate-kinase	gnl\|CDD\|237003	PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase.	0
NZ_CP035503.1\|WP_142818167.1\|1405523_1406060_+\|damage-inducible-protein-DinB	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	4.2595e-31
NZ_CP035503.1\|WP_142818163.1\|1399044_1400115_+\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	1.22461e-64
NZ_CP035503.1\|WP_142818178.1\|1419995_1421078_-\|prephenate-dehydratase	gnl\|CDD\|223155	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism].	6.00859e-120
NZ_CP035503.1\|WP_142818176.1\|1419089_1419968_-\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	gnl\|CDD\|237820	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	3.72494e-88
NZ_CP035503.1\|WP_142818183.1\|1422750_1425396_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP035503.1\|WP_142821136.1\|1406007_1406928_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176139	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.71736e-82
NZ_CP035503.1\|WP_142818170.1\|1409871_1410990_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	9.70179e-142

>NZ_CP035503.1|WP_142818170.1|1409871_1410990_+|CoA-transferase
MADSSKPGALAGIRVIDVSRILGGPYCGQILGDHGADVLKVEPPQGDDTRAWGPPFQNGVASYYMGLNRNKLGTQLDLASERGQSMLLGLLEGADVLIENFKTGTLEKWGLGYEALAQRFPRLIHCRVSGFGADGPLGGLAGYDAAVQALTGIMSVNGEVGGEPLRVGLPVVDLVTGLNAALGVLLALQERERSGRGQFVEASLFDCGLSLLHPHAANWFADGQKPKLTGNAHPNIYPYDAFATHTVPIFLAVGNDRQFELLCRHLGTPELAQDERFVKTYSRSQHRAVLRQLLETELSRHDGAALAEALMQIGVPCAPILTVDAALQHPHTAHREMVVRIGDNYTGVASPIKLSRTPATYRHAPPVELSGS
>NZ_CP035503.1|WP_142818169.1|1408857_1409832_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MNIRRIILGLGLGLMVSAAALAQKDFPSKPLTLVVPFAAGGPTDAMARTLAHALGPVLGQPMIVDNRPGAGGNIGADYVARAQPDGYTLLFGTSGPLAINVSLYGKITYDPIKSFAPVIQIGHLPNVLVVNPSVPAHNVKELIAYAKANPGKLSFASSGNGASSHLAGVMFNSMAGTDVQHIPYKGTGPALNDLLGGQVAMAFTDVLTALPHIKAGKLRVLGVTTATRSQVLPDVPTLAEQGLKGFDVSVFFGIVAPAGTQQETITRLNAAFVKALAQPDVRKTLTAQGLEPAPATTPAQLATFMRSEVVKWRDVVKTSGAKLD
>NZ_CP035503.1|WP_142818168.1|1407025_1408771_+|DNA-alkylation-response-protein
MGQRFANAANATLAIPDRSGTNLFDDDAELQSLLGLYLPEPLHAHLLPHFKRLGALAGGPLDELANTADHNAPTLEHRSRTGVDAQRIVKHPAYVEMERLAFSEFGLAAMSHRAGVFDWPQTLPAAAKYALTFLFVQAEFGLCCPLSMTDSLARTLRKFGEPALVARYLPALISQDVETLAQGAMFMTEQGAGSDVAATATLAERSGDGEGDAWRLSGDKWFCSNPDAELAMVLARTGEAAAGIRGVSLFLLPRHRPDGSLNAYRIVRLKDKMGTRSMASGEIRLDGALAYLVGQEGRGFVQMADMVNNSRLSNGVRAAGLMRRAVGEAFFIARHREAFGRKLIDLPLMRRQLVKLLLPSEQARTMMFQTAEALRRADAGDATAYQLVRILTPLIKFRACRDARKVTGDAMEVRGGCGYIEEWSDPRLVRDAHLGSIWEGTSNIVALDVIRAIRREDSLTALVAYLEGLLSEAKLDQGLRERFAATLVRVTALANVAVGDGGEALARRAASALYHLTTSVAMAWEASQTGSLARMRLAGLVLQHRLLPNDPLTADLDHADDLAALFGTAAQAKSGAGTAVA
>NZ_CP035503.1|WP_142821136.1|1406007_1406928_-|LysR-family-transcriptional-regulator
MELRHLRYFVVLADELHFGRAAQRLAMTQPPLSFNIKQLEASLGVTLFERSSKGVKLTPAGDSFCESALRLLAEAEQAQTLARQVAAGTTSKLRVGFVGSMIFRGLPERLRSFQEAHPLVQVQLTELNSAEQVEAIGRRQLDVGFVHTSRIPADMKRFMYMSEPFVCCLPQSHPAARQASVELRELSSDAFILFSRGASPDYFERILALCAEQGLQPLVKHEVRHWLSVVSLVAKGVGVAVVPNALREAGIAGARFVPLSDSKYRSEVHCVWQERRLPTALPALLDVFRATPAQSSPSPPRPRRPA
>NZ_CP035503.1|WP_142818167.1|1405523_1406060_+|damage-inducible-protein-DinB
MTTNAFSDNYRFLARYNRWFNGRLYDACEKLDDVERKRDRGAFFGSIHHTLTHLVLADKMWLQRFARQAVAFEAFPPELLTLPEGSDYTSDLHPDWHDLKRTREALDAAIEAWVAEMPDDFLTRTMRYSNTKGVQRAHPMWQAMTHFFNHQTHHRGQVTTLLMQAGVDVGVTDLIALV
>NZ_CP035503.1|WP_142818166.1|1401707_1405439_+|5-oxoprolinase
MNPDASLRWQFWIDRGGTFTDVVGRRPHADGSFSLVTHKLLSDNPEQYRDAAVAGIRHLLGLRPGEPVTPAQVACVKMGTTVATNALLERKGEPTLLVITRGFRDALRIAYQNRPRLFDRHILLPELLYSAVVEASERVGAHGEVIAPLDEALLKQELLAQYQKGLRSVSIVFMHGYRYTGHEKAASRIAAEVGFTQVSTSHETSPMMKLVSRGDTTVVDAYLSPILRRYVEQVQAEMPGVRLFFMQSSGGLADAHAFQGKDAILSGPAGGIVGMARTAQLAGIGRVIGFDMGGTSTDVSHFAGEFEREFETQVAGVRMRAPMMSIHTVAAGGGSILAFDGARFRVGPESAGANPGPASYRRGGPLAVTDANVMVGKLQPRYFPRVFGHQGDEALDADVVTAKFAALAQQTGRTAEDVAEGFIHIAVQQMANAIKKISVARGYDVTRYTLQCFGAAGGQHACQVADALGMTRVFVHPLAGVLSAYGMGLADQNVIREQAVELKLTDAALPEIAARLDALAATTEAELARQDVGRGGITTHRRVHVRYEGSDAALVVPWDEASTLVASHTALPPERASLAWEGPALREAVATISERFEAAYRQRFSFLMQGKGLVVEAVSVEAVAAGDAPSEPRLPMHEAREVPCRETVRLYSAGRWHDAALVVREDLRPGDMIPGPAIIAEQNATTVVEPGWAAALTELNHLLLERRAARAITFAAGTHADPVLLEVFNNLFMNIAEQMGLQLQNTAYSVNIKERLDFSCALFDADGNLIANAPHMPVHLGSMGESIKTVIRENAGAMQPGNVYVLNDPYHGGTHLPDITVITPVYLPGAASADTPRPLFYVGSRGHHADIGGITPGSMPPFSTTIEEEGVQINNFLLVERGVLREAEMLALLQSGKYPSRNPQQNLADLKAQIAANEKGVQELRRMVEHFGLEVVQAYMRHVQDNAEESVRRVITRLRDGSFTLLLDNGAQIQVAIRVNAAERSAVIDFTGTSKQQRNNFNAPTAVCMAAVLYVFRTLVDDDIPLNAGCLKPLAVIIPPGSMLNPNPPASVVAGNVETSTCITNALFGALGVMASSQPTMNNFTFGNARHQYYETISGGSGAGGEFDASGALVGGFDGTSVVQTHMTNSRLTDPEVLEFRFPVRLLSYEIRQGSGGAGHWRGGHGGVRRVQFLEAMTASILSNGRVHPAFGMAGGQPGQVGLNRVLRAGGTVEELAHIGQAGMQPGDVFEIHTPGGGGFGSA
>NZ_CP035503.1|WP_168226708.1|1401394_1401547_-|hypothetical-protein
MLQQERYTLTLGIAGSCLSGTQPIIAGMRAAAFLMARVRRGTRQDRLLRK
>NZ_CP035503.1|WP_142818165.1|1401123_1401405_+|hypothetical-protein
MNHHSGRSLPSHRKGGGFGRWASLVLGLALAIVGLLLVGGRAGGSGRMLDDITTPAGAPSPAGYAGSRDPSVPAAETVHFTAQDSDTAPVATF
>NZ_CP035503.1|WP_142818164.1|1400249_1400933_+|response-regulator
MNPNDHVRVLIVDDEAQYLQRCTAAVLADPSLRLTGAVTSGAAAIALLDHCPPDVMLIDPGLPDMLGIEVIRHAVRHCSHTHILVVAASADAGHVPACVDAGATGYLLKDVPAPRICVSIHELHDGGASIGPGMARHVLECFRQTPAAAAPVAPVNGAVRNGSPVLLSQRESDILRLVAKGMAFAEVGALLSISPHTVVTHVKKIYRKLAVHSRGEAVFEASQMGLL
>NZ_CP035503.1|WP_142818163.1|1399044_1400115_+|XdhC-family-protein
MENLDVMVLRTLRDWRTSGKRALLATVVRTWGSSPRPVGSIMALCEDGLVVGSVSGGCIEDDLIYRHTQAYSGKDSGNQIPMGAPGFVKYGVTADEAHRFGLPCGGTLELLLEYDPDAASLSTLVNALDAGQSMQRTVRLADGSVSLTPATAPAELDLSQTELVNTFGPEYRMLVIGAGQLSEYLATMALFSGFAVTVCDPREEYRSGWSVAGAKVVSEMPDDVVAAFRADRRSCVVALTHDPKLDDLALLEALKTDAFYVGAIGSRRNNGARKQRMIEHFEQTEASLARLRGPIGIYIGSKTPPEIAVSVMAEILAVKNGVTLPRDMDVARAKDELAIVANDPGELVCAMPRSYA
>NZ_CP035503.1|WP_142818172.1|1413324_1414488_-|lipopolysaccharide-assembly-protein-LapB
MDFDLSWILLGLPIAFILGWAASRFDLRQLRMENRQAPKAYFKGLNFLLNEQQDQAIDAFIEAVQNDPDTSELHFALGNLFRRRGEYERAVRVHEHLLSRGDLSRADRERAQHALALDFLKAGLLDRAEEALRKLEGTPFETQASLALLAIFERSRDWPQAARIAQKLEDAGQGSFSARQAHYLCEQAAAQTAEGNNAATHRLLDQALTTAPHAPRPRIDLAALHLRLGEADAAFESLQALLDVAPLSLPLVAHTLCEAAMACGHSAQALSLLKTSYAQDPSLDVLDAIVTLTAAGEPAQEVQGGRDWYLKHLEREPSLIAAAKWIAGEKLEHEQFHPQVQRALDHAARPLMRYRCAACGFEATQHFWQCPGCQAWDSYPARRVEEL
>NZ_CP035503.1|WP_142818173.1|1414477_1414768_-|DUF1049-domain-containing-protein
MKYLMWLLKAAIFFTLFAFALNNQQDTIVHFFFGTQWRAPLVLVVLAAFAAGVVLGVLGMVPRWWKHRVAAKKARQGAASASHPTDSVSAGIHDGL
>NZ_CP035503.1|WP_142818174.1|1414813_1415128_-|integration-host-factor-subunit-beta
MTRSDLVEELAARFSQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSINRRSPRMGRNPRSGESVAIPEKRVPHFKPGKALREAVDKRTQELEAAASKA
>NZ_CP035503.1|WP_077560551.1|1415215_1416901_-|30S-ribosomal-protein-S1
MSESFAALFEESLQRSEMRMGEVVTAEVVRIEHSFVVVNAGLKSEAYVPIEEFKNDKGELEVQVGDFVSVAIDAIENGYGDTILSRDKAKRLASWMALEKALESGEFVTGTTSGKVKGGLTVLVNGIRAFLPGSLIDTRPIKDLSPYENKTMEFKVIKLDRKRNNVVLSRRAVVEASMGEERAKLMETLKEGAVVHGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEKNRVSLGLKQMGDDPWMGVSRRYPQGTRMFGKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKIVSLGDEVEVMVLEIDEDKRRISLGMKQCKANPWQEFAQDTKRGDRVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDSDPFTTFTTINDKGQIVTGKVKTVDARGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVTAVVVNVDRKTRNIQLSIKAKDMADQQEAMSSLSQQSARENAGTTSLGALLRAKLDNNNN
>NZ_CP035503.1|WP_142818175.1|1417079_1419089_-|bifunctional-3-phosphoshikimate-1-carboxyvinyltransferase/cytidylate-kinase
MFATEFLDIPPLQAAGGTVVLPGSKSISNRVLLLAALSAGTTTVHDLLDSDDTRVMLGALQQLGCDIVRSEGCVAIEGLGGRLKNARAQLFLGNAGTAMRPLTAALALLGGDFELSGVARMHERPIGDLVDALRQLGCRIDYLGQEGYPPLRVGAPALQPGAPIRVRGDVSSQFLTALLMALPLTAAAQDVVIEVVGELISKPYIEITLNLLAHFGIAVRRDSWQRFTIPAGSRYQSPGAIHIEADASSASYFIALGAITAGTSGQKDVRIEGVGADSIQGDIRFIEAARLMGAQIVSGPNWLEVSRGAWPLHAIDLDCNHIPDAAMTLAIMALFADGPSLLRNIASWRVKETDRLTAMAAELRKLGAMVEEGADFLRVTPPASPAHWRAASIHTYDDHRVAMCFSLAAFNPAGLPVRIEDPKCVAKTFPDYFEALFALAHTFAARIPVICVDGPTASGKGTLAATLAHRLGYHYLDSGALYRITALAAGRAGLALDAAHEVAIAALAQRLPVRFVGDQVWLDGADVTDAIRTEEAGMNASKVSALPAVRTALITLQHSFRQLPGLVADGRDMGTVIFPDALLKIYLTASAGHRAERRYKQLISKGFPAILDNLRTDLEARDARDSSRSVAPLKPAGDALLLDNSDLTIEESVNQVLGWWRGKQPFGTS
>NZ_CP035503.1|WP_142818176.1|1419089_1419968_-|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein
MFEQLGLIGCGLMGGSFALALKRAGLVKRVVGYSKSPSTTERARQMGVIDLEAPSALLAVSGADIVLLAIPVAATEATFKAIKHLLTPQTLVMDVGSTKRDVVDAARRVLREQVGSFVPAHPITGREVSGVEHADADLYMGKQVILTPIERTLTAHLQKAIEVWTALGCHVQKMAPEAHDAAFAAVSHLPHLIAFALMNGITGQAGGQEYLSLAGPGFRDFTRIAASDPHMWRDIMVANREELLAQSQIFQRSLQAMEALIASGNADALEQQIGQASQTRAHWRMTSGKSGK
>NZ_CP035503.1|WP_142818178.1|1419995_1421078_-|prephenate-dehydratase
MAKTLAQLRTQIDAADRELLALLNRRAELANEVGEIKRAEGSPVFRPEREAEVIHGLQSSNPGPLKPGNVASIWREIMSACRALEAPQRVAYLGPAGTFSEEAALRFFGTSIEHVPCVNFDEVFRATAAGTAEFGVVPVENSTEGVVARSLDLFLNSPLHIVGETSLLVRHNLLRQSNSLEDIEVVLAHPQALAQCQGWLNTHLPDVERRAVSSNAEGARLAATHPAWAAIASERAGSEFGLHVAAHAIQDDAFNRTRFAVICLPQTLQAPQASGRDCVSLIVSVPNKPGAVHDLLVPLKTHGVSMTRFESRPARSGQWEYFFYVDIQGHPSQPNVAAALKDLQGLCAFYKVLGTYPVGD
>NZ_CP035503.1|WP_142818180.1|1421081_1422188_-|3-phosphoserine/phosphohydroxythreonine-transaminase
MTTPASTRPYNFSAGPAAIPEEVLRLAAADMLDWHGSGMSVMEMSHRGKEFISIYERAEADLRELLAVPPHFRILFMQGGGLAENAIVPLNLSGGTSADFVVTGSWSQKSLKEARKYCTVHVAASTEADGYTTLPDPAGWQLADNAAYVHICTNETIHGVEFQILPDLKALGSKAPLVIDFSSHVASRAVDWSRVGLAFGGAQKNLGPAGVTLVVVREDLLGHALPACPSAFDYKTVADSHSMYNTPPTWAIYVAGLTFQWLKKQGGIAAMEQRNIAKAQLLYDFIDRSQFYANRVAPSCRSRMNVPFFLRDESRNEAFLAGAKDRGLLQLKGHKSVGGMRASIYNAMPIAGVQALVNYMQEFERTQS
>NZ_CP035503.1|WP_142818181.1|1422184_1422754_-|DUF2059-domain-containing-protein
MKSFKLALLAAALATSSIAMAQDGKAALIKQFIDLQRPGIESLARGLVQQSSASIAQAGSQYLQTQVPPEKREAAAKAADAELKKYFDGAYPIVRDKAVQVAPAALGPILEQNLSEDELRQLVAWISSPLAKKYQDLNPKLQTALGEKVVAETRASIEPKLSLLGPAVAKALGAPPPAAPAKAPAPAKK
>NZ_CP035503.1|WP_142818183.1|1422750_1425396_-|DNA-gyrase-subunit-A
MTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDQSVYDAIVRMAQDFSLRHMLVDGQGNFGSVDGDNPAAMRYTEIRLAKIAQEMLADIDKETVDFGPNYDGSEKEPLVLPSRVPNLLINGSGGIAVGMATNIPPHNLNEVVDACLHLLKNPHAGIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLEHRREVVTRRTVFTLRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKVELMARPWDSQLVREMLTRTRADGGVINADDYRPDGLEKTYGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKEVMAEIEDLLDILAKPARVSTIIGDELGAIKQEFGQTKIGARRSLVEHSSFDLSTEDLITPTDMVVTLSHSGYIKSQPLSEYRSQKRGGRGKQATATKEDDWVDQLFIANTHDYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRSFPANQYVFMATSMGTVKKTTLDEFGNPRKAGIIAVSLDDGDFLIGAALTDGQHDVMLFSDGGKAVRFDEDDVRSLGRNARGVRGMSLEVGQSVIAMLVAEDESQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQQTERNGKVVAATLVRADDEIMLITDKGVLVRTRVGEIREMGRATQGVTLIGLDEGSRLSGLQRIVENDVNGDSDSDNDSTSSSTTENPQ

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Crispr_ID: NZ_CP035503_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035503_2

1852277-1852374

Orphan

Consensus_repeat	Method
AACGAGACCGAGCCAATGATCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035503_2

>merge|NZ_CP035503|2|1852277-1852374|CRISPRCasFinder
AACGAGACCGAGCCAATGATCTGGGTAGATTGTTTTGCATTGCCGAGTGCCTTGGAAATTCCTTGCACTGAGAGCAACGAGACCGAGCCAATGATCTG

>NZ_CP035503|2|2|1852277-1852374|CRISPRCasFinder
AACGAGACCGAGCCAATGATCTG	GGTAGATTGTTTTGCATTGCCGAGTGCCTTGGAAATTCCTTGCACTGAGAGC
AACGAGACCGAGCCAATGATCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035503.1\|WP_142818549.1\|1856113_1856602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225184
NZ_CP035503.1\|WP_142818548.1\|1854401_1855985_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293752
NZ_CP035503.1\|WP_142818544.1\|1850016_1850796_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NZ_CP035503.1\|WP_142818540.1\|1845509_1846013_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP035503.1\|WP_142821170.1\|1848989_1849796_+\|FAD-synthetase-family-protein	unknown	unknown	gnl\|CDD\|185679
NZ_CP035503.1\|WP_142818545.1\|1850792_1851551_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NZ_CP035503.1\|WP_142818552.1\|1860057_1860663_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP035503.1\|WP_142818538.1\|1844530_1844839_+\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183800
NZ_CP035503.1\|WP_142818550.1\|1856773_1857760_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugD	unknown	unknown	gnl\|CDD\|270294
NZ_CP035503.1\|WP_142818551.1\|1857847_1860040_+\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|215016
NZ_CP035503.1\|WP_142821172.1\|1860659_1861094_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226705
NZ_CP035503.1\|WP_142818547.1\|1853662_1854331_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180774
NZ_CP035503.1\|WP_168226721.1\|1861436_1861595_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035503.1\|WP_142821169.1\|1846021_1846822_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP035503.1\|WP_142818546.1\|1852532_1853495_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP035503.1\|WP_142818541.1\|1846865_1847729_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP035503.1\|WP_142818553.1\|1861117_1861438_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035503.1\|WP_142818542.1\|1847725_1848478_+\|ribonuclease-activity-regulator-RraA	unknown	unknown	gnl\|CDD\|236200
NZ_CP035503.1\|WP_142818539.1\|1844868_1845498_+\|carbon-monoxide-dehydrogenase-subunit-G	unknown	unknown	gnl\|CDD\|176853
NZ_CP035503.1\|WP_142818543.1\|1848496_1848934_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366

Protein	Function_ID	Function_description	E-value
NZ_CP035503.1\|WP_142818549.1\|1856113_1856602_+\|hypothetical-protein	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	9.45417e-33
NZ_CP035503.1\|WP_142818548.1\|1854401_1855985_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293752	cd16028, PMH, Phosphonate monoester hydrolase/phosphodiesterase. Phosphonate monoester hydrolase/phosphodiesterase hydrolyses phosphonate monoesters or phosphate diesters using a posttranslationally formed formylglycine as the catalytic nucleophile. PMH is the member of the alkaline phosphatase superfamily. The structure of PMH is more homologous to arylsulfatase than alkaline phosphatase. Sulfatases also use formylglycine as catalytic nucleophile.	0
NZ_CP035503.1\|WP_142818544.1\|1850016_1850796_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	5.77073e-51
NZ_CP035503.1\|WP_142818540.1\|1845509_1846013_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	2.44847e-66
NZ_CP035503.1\|WP_142821170.1\|1848989_1849796_+\|FAD-synthetase-family-protein	gnl\|CDD\|185679	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.	7.32977e-63
NZ_CP035503.1\|WP_142818545.1\|1850792_1851551_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.6868e-45
NZ_CP035503.1\|WP_142818552.1\|1860057_1860663_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.39773e-21
NZ_CP035503.1\|WP_142818538.1\|1844530_1844839_+\|YciI-family-protein	gnl\|CDD\|183800	PRK12863, PRK12863, YciI-like protein; Reviewed.	2.44167e-18
NZ_CP035503.1\|WP_142818550.1\|1856773_1857760_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugD	gnl\|CDD\|270294	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	1.94827e-143
NZ_CP035503.1\|WP_142818551.1\|1857847_1860040_+\|CHASE2-domain-containing-protein	gnl\|CDD\|215016	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time.	7.78462e-72
NZ_CP035503.1\|WP_142821172.1\|1860659_1861094_-\|hypothetical-protein	gnl\|CDD\|226705	COG4254, COG4254, Uncharacterized protein conserved in bacteria [Function unknown].	1.00998e-06
NZ_CP035503.1\|WP_142818547.1\|1853662_1854331_-\|SDR-family-oxidoreductase	gnl\|CDD\|180774	PRK06953, PRK06953, SDR family oxidoreductase.	1.37293e-82
NZ_CP035503.1\|WP_142821169.1\|1846021_1846822_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	8.32942e-63
NZ_CP035503.1\|WP_142818546.1\|1852532_1853495_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.86107e-40
NZ_CP035503.1\|WP_142818541.1\|1846865_1847729_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	4.31993e-90
NZ_CP035503.1\|WP_142818542.1\|1847725_1848478_+\|ribonuclease-activity-regulator-RraA	gnl\|CDD\|236200	PRK08245, PRK08245, hypothetical protein; Validated.	1.84111e-97
NZ_CP035503.1\|WP_142818539.1\|1844868_1845498_+\|carbon-monoxide-dehydrogenase-subunit-G	gnl\|CDD\|176853	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	5.80119e-50
NZ_CP035503.1\|WP_142818543.1\|1848496_1848934_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	7.6527e-07

>NZ_CP035503.1|WP_142818545.1|1850792_1851551_-|ABC-transporter-permease-subunit
MKKVVGVGLFLLVWEGVAHSGLVPQQYFPSVTQVALAAREMLLSGELLQAEGKTLMRALIGLLLAIGLGVSLAMLAARYLLLARMWAPLVEIMRSVPPAALVPLGIFALGLTPKLFIGIVVFAGITMVYLPALNALINTEPVQINAARTLGYSRLETLFLVRLPAAWPEIFTGIRVAAGAALIASIASEMLAGKDGLGFLLFDTAFSLRTNAMFAVMLVAALNGILFNELVLWARRPLAGWQDALNHLGDAR
>NZ_CP035503.1|WP_142818544.1|1850016_1850796_-|ABC-transporter-permease-subunit
MNRLSRLRDSAWPGTLFLLGLLLTWEVAARQIASPNFPGALTVLSKLGEVGPALLREMGVTLWRAAAGLLLALVTMLPLGVFIGRFRALGDFIEPVIDMLRPLPPLAIVPVAMLFAGVGSGAKVMVIFYSVSFPIILSAIDAVRGAHPMLSNVARSLRMSRREIMLEIDLPAALPQVMVGIRIAVALAILISVSTEMLLSTDGIGNFIMRSQEEFQIAAGMAALIVIAVTALIINGVVEWIDRRALRWHYAKQASTTSN
>NZ_CP035503.1|WP_142821170.1|1848989_1849796_+|FAD-synthetase-family-protein
MSIGMFDGVHRGHRCVLARLREQGRRFGLPTVVLTFDPHPRAVLNPSAAPQMLSPLADRLKLLAATGDVDHCLVLPFDLRRSEESAESFVQDTLLGRLRMRALVVGENFACGRGRSGDVRRMRALGERHGFDVHAIALHSAPVIDLFGPCSSTATRRLIHSGDVRAASLLLDRPHELTCAVEAVSAMPIMALDARVPDDMCAPPADHYAGAVCNRRSGAGWTPAVLHMREDARTHRRLVRIENALAAECGDLISLRFFDKAAPSERFA
>NZ_CP035503.1|WP_142818543.1|1848496_1848934_+|cupin-domain-containing-protein
MTKEQHPHVLLAHTLEVLLHREQFDDSKWVNFPEYGLRQYFLWKNPDTGASIALLEFDKGGRIPVKHTHASNQFMYCISGDYEYTDVGLRLKPGSYYMNPKDHPHGPTIAHEKSVLIEIYDGPHYYEKPVFHTDETIGDFLAKKT
>NZ_CP035503.1|WP_142818542.1|1847725_1848478_+|ribonuclease-activity-regulator-RraA
MSQQTSQQAFVPLGDETRARLARCGAATLANALLKRGLRNAFLLGLHAVAPGQPTLIGPAWTLRFIPAREDKDSMALYERNDSLHRRAIEECPPGAVLVMSTGGDLSASCMGDMMALRLKVRGAAGVVTDGGYRDTPGIIATGLPCFQRAPSGPATPIALHPVEFNVPIGCAGVAIYPNDVIVGDGEGVVAIPRLLVDEIAAECGNISDYEAFVSMHIRRGRSIFGLFPATPESTQEYQRWVAAGRPALN
>NZ_CP035503.1|WP_142818541.1|1846865_1847729_+|fumarylacetoacetate-hydrolase-family-protein
MKLLSFVSPTRASFGVVDGDRVIDMGVRLGATCPDLKGALQGGALERIERLAAGAPADYRLDEIRFLPLMPNPGKIVCVGLNYVAHRAEGGHKTESPAPVIFLRVPESQVGHGQPMLCPRESHQFDFEAELAVVIGKAGRRIAEADAMSYIAGISCYNDGSVRDWQLQTPQWSPGKNFPATGAFGPWLVTPDEVDPVRSLRLSCRLNGETMQDTTTDLMMFPIPKLISFISTWTTLEVGDVIVTGTPGGVGLRRNPQVWMKHGDVVEIELEGVGVLRNPIVKEGPAV
>NZ_CP035503.1|WP_142821169.1|1846021_1846822_+|xanthine-dehydrogenase-family-protein-subunit-M
MIDFGYVRPRSVAEAAKLLADEPEAKVLAGGQSLIPILKQRLARPSLLVDVQALDAMRGIEIDDSRVRLGAFTRHAEVAANARIAEALPALAHMARGIAHPQVRHMGTIGGSLAHNDPGADYPAAVLGLGATIVTDRRRIAADEFFTGLFDTALAAGELLLQIEFPRHRRSGYCKIPHPASGLVNTGVWITRLGDGVRVAVNGASPCVFRHGELEQRLAAHFDPASLDDFQQPAQGLNADMHTSAEYRAQLVAVAARRALSMVLSH
>NZ_CP035503.1|WP_142818540.1|1845509_1846013_+|(2Fe-2S)-binding-protein
MPTLNITLAVNGQVQSHEVEARTLLVHYLRDHCGLTGSHVGCDTTQCGCCTVHLDGRAIKSCTVLAAQAQGAEITTIEGIGSVERLHPLQDAFRRHHALQCGFCTPGMVMQGIDIVRRGRGGDEAAVRHDLEGNLCRCTGYQNIVDAIMDYAGGAAGDAAVAVEGRR
>NZ_CP035503.1|WP_142818539.1|1844868_1845498_+|carbon-monoxide-dehydrogenase-subunit-G
MELTGHQLLPIPRDRVWSALLDPETLRAAIPGCEFVTDEGNGLYTVGVLAAVGPVKARFKGRMQQQDVQPPNRYTLSFEGDGGIAGFAKGSAEVELLEEGEGRDNTRLNYRAQAQIGGRLAQIGSRLVDATAAKMSAQFFDRLTQVITAPAGAPEAALAEAQVVARPAAVGVPVAVQAAPGTVTIQMPAWAWAFTLAALVALIGWLAVN
>NZ_CP035503.1|WP_142818538.1|1844530_1844839_+|YciI-family-protein
MNLYMVYRLDRSDGQAETIRALTRPAHRAYMDHFAARVRLGGPVLDATDQACGGLMVIEAESEDAVRRMVAEDPFEVAGLSSRIDIYPFRWQTKRPDDLPPL
>NZ_CP035503.1|WP_142818546.1|1852532_1853495_-|ABC-transporter-substrate-binding-protein
MNTRRHFTTWLTASLIGAALISPAQAQEVKKLRVALVPGIGCLSIYVAAVKGFFKAENLDLEEIPINTGPGAATAVTSNSADVGYGGTLPIILARSHNIPFRFVMGGYYEQAPLSSDDAIIASNKSGINSVADLKGKVIAVNNAGGVNDQQVRLKLAEAGIPIESVKILSVPFPQMQAALQIGNADAVATVEPFRTAILLAKLGKVIARGYVKDKDLTKAVPVGVFYATEQWINGNADTLARLKRSIEKANDFIKANPAEAKEILVQRLRLPADVVGALTLPPYTTTIDPAGLQAVMDAALSVGFLKKPMKAQEMFADSK
>NZ_CP035503.1|WP_142818547.1|1853662_1854331_-|SDR-family-oxidoreductase
MAMNVLLIGASRGIGLEFVRQYRADHCAVTATARDDAGLNRLRQLGASVLRLDVVDEACVSGLASELKPSWFDVVIICAGAASHLEALEAPTEAAFDSIMHANVLGPMRVIPSVVTALAPGAKVAVLSSRLGSIGGRTQTGMWVYRASKAALNSVLKDVSLALGHRATCVSLHPGWVRTDMGGVAADIDVADSVAGMRKVIASLNSSDTGSFRNYDGESIPW
>NZ_CP035503.1|WP_142818548.1|1854401_1855985_-|sulfatase-like-hydrolase/transferase
MISSDRKTVRNVLFIMCDQLRWDYLSCYGHPTLATPHIDNLAKRGVRFDAAYVQSAVCVPSRMSYYTGRYVSSHGSTWNYVPLSVVQRTLGDFLEAAGLDAVLAGKTHVIPDRLGLQRFNMDPESPRGRRYLEGGFVEMDRYDGHAPPGAESGYADYLRSKGYKSDDPWSEFAIGALDEEGKFASGWLLRNAHLAARVDRSHSETAYMTDRALDFVRAKGDQSWVLHLSYVKPHWPLLAPAPYNDLYRDADAGPIIAVSAETRPPHPVLAAYRTAHEDCLSYAQESVVRHVRPTYMGLIKEVDDHLGRLMAELEQLGRLDDTLIIFCSDHGDQLGDHGLGEKELFYEQAVRTPFIVVDPRAAADRTRGTAESRFVEAIDVLPTILDALGLPQPDHLLEGRSLVPLLHGAHVENWRDCVFSELDYAFRDARRALNRGPDECYAWMVRNTRWKYVHYQGLRPQLFDMQEDPQELHDLGADPIFATVRGELKDRLADWLMTRKRRITLDNATVERTTEGWKALDMQIGVW
>NZ_CP035503.1|WP_142818549.1|1856113_1856602_+|hypothetical-protein
MEKLDLHIRANPKPRHLQLLAASPQVVRLAFGNLDFQADLGLACDPDEAELVPVRLALVLASRRATLAAPIDGITASTTDPVRIQTDAQRSRRAGFGAKLCIHPAQVAVVNAALAPTPAELEWARRVLAAYAQAGGGVFSLDDRMVDAPVVRLAQRIVDGER
>NZ_CP035503.1|WP_142818550.1|1856773_1857760_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugD
MIKFKTLRIAAVAALVLGAHAAAISEIAYPEKPVILVVPFAAGGPTDVVARMIAIPMGKALGQSVLIENTVGAGGTIAATRVARAAPNGYTIFLHHIGMATAPALYRKLSFDPLKDFEYVGQVVDVPMTLLARKDFPANNFDELLSYVRTNKDKVSLANAGLGAVSHLCGLMFMSQIGVELNTIPYKGTGPAMNDLLGGQVDLLCDQTTQTMPMIKEGRLKVYGVTTLKRLGSLPNVATLDEQGLKGFEVKAWHGMYAPKGTPAPVMDKLNAALRVAMLDPMVKQRMNDLSSDIVPADKMTPAGLRTHLEAEIGKWGPVIKKAGIYAD
>NZ_CP035503.1|WP_142818551.1|1857847_1860040_+|CHASE2-domain-containing-protein
MFSRLRLHNLPGVLSNLAAVGLVIALAVAALVLRLVDPIPLQNLRLAQFDQLQRWYPRAYSPVGVRVVDIDEASLKEYGQWPWPRTRLAELVDRLHAAGAAVVVFDVLLAEPDRTSPARMAQLWNDPKVSALLETLPDNDLVLQKSFEAQNVVLGSSLARSGQRADPLNGPGKPDLPYRIIHGDAGNPAQWLNAFDSIVLPLPDLMVSAKGVGALNFASDADGVVRRVPMLFRLGNDIVPSLSAEALRVAHGTRNYVLRSSDAGMKEVRIGDLTVPTDSKGEIWLYYTQPQRDRYVSAARVLDGQVGKEKLEGDIVLVGSSAAGLMDLRFSPMGEVVPGVETHALALEQILLGQYLERPAWVGGLEALVIVLCALTAGLFALAAPAWSALLAMLVVLTAMVAGVCYAFAAHHLLLDAIYPALVAGFGFALGGSIHHWLTERERRWVREAFSRYVSPNRVAHLVAHHERLQLGGRRQTCSFVFTDLAGFTSMMEAEDPAQAVAQLNEYLDGMVAIVFKHDGTLDRIVGDAVAVLFSAPVPQQDHRQRAMDCALEMDRFATAHAKRLRASGVAWGYTRIGVHTGEVIVGNFGGKTLFDYRALGDPINTASRLESVNKHLGTRVCVSRAILDGCTGVPARLVGFLVLKGKVQPLEVYEPLAATNTELTAPTADYAAGMRLLRPLDPPDPDSARLALVHFELLIQKYPDDPLVSLHLARLRSGAQDDLIVMQEK
>NZ_CP035503.1|WP_142818552.1|1860057_1860663_-|OmpA-family-protein
MKGFCTIGRIAAVLAMAASLAACVSPPSSYIVLLPNPDGTVGSVIVRSQRGEQVVSQADQGVLLDGSKAAFDVPQAQIARDFGAAVAARPLLPEHYMLFFDLGTSNLTAESKKELPRILDRARARKTADISVIGHTDTLESASFNYLLGLKRAKAIAEQLRHLGLENMELSVESQGLRNLLVPTPMGVAEPRNRRVEITIR
>NZ_CP035503.1|WP_142821172.1|1860659_1861094_-|hypothetical-protein
MFSACALTLLSGLAQAQQEPVGYVKTVTGDAWITTMGQRVKAELGTAVMIGSQIKTQPGASLGVTFKDNTVMSFGPDTEMNVDEYIYAPAQGRLGLVTEMVKGSLNYVSGLIAKLKPEAVAIKTPSGIIGVRGTQFLLQVEPAR
>NZ_CP035503.1|WP_142818553.1|1861117_1861438_-|hypothetical-protein
MQNGLLSRCDFVGIRLQPGRNTGTWVARLLHRTIEQKVCRLSLRTKMALIAIACQQTQFSLAQKMRVPSFIDFCRQKEATRGAMAEPAHPIFIEFQRCARTKQGEI
>NZ_CP035503.1|WP_168226721.1|1861436_1861595_+|hypothetical-protein
MQWNRFDSIARQGHAYACEVLDGMTAEQLGAFRTAGHRPDAELDLKVVPQSG

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Crispr_ID: NZ_CP035503_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035503_3

4336849-4336967

Orphan

Consensus_repeat	Method
ATGGCCCCCACGCTTGTCACTTCGTGTACGGCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035503_3

>merge|NZ_CP035503|3|4336849-4336967|CRISPRCasFinder
ATGGCCCCCACGCTTGTCACTTCGTGTACGGCGCTGCCCCCCGAGGGGGCTGGCCTTGCTCGGGGCGGCCCTTCGCGGCGGCCGATGGCCCCCACGCTTGTCACTTCGTGTACGGCGCT

>NZ_CP035503|3|3|4336849-4336967|CRISPRCasFinder
ATGGCCCCCACGCTTGTCACTTCGTGTACGGCGCT	GCCCCCCGAGGGGGCTGGCCTTGCTCGGGGCGGCCCTTCGCGGCGGCCG
ATGGCCCCCACGCTTGTCACTTCGTGTACGGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035503.1\|WP_142820987.1\|4341659_4342877_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_CP035503.1\|WP_142821423.1\|4340647_4340821_+\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
NZ_CP035503.1\|WP_142820975.1\|4329976_4330444_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP035503.1\|WP_142820973.1\|4328014_4328437_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319945
NZ_CP035503.1\|WP_142820982.1\|4337389_4337884_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NZ_CP035503.1\|WP_142820984.1\|4338879_4339422_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP035503.1\|WP_142820985.1\|4339529_4340648_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP035503.1\|WP_142820979.1\|4334359_4335229_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP035503.1\|WP_142820976.1\|4330440_4332036_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP035503.1\|WP_142820972.1\|4325519_4327847_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376913
NZ_CP035503.1\|WP_142821422.1\|4336973_4337393_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP035503.1\|WP_168226791.1\|4333076_4334354_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP035503.1\|WP_142820980.1\|4335225_4336299_-\|peptidase-M29	unknown	unknown	gnl\|CDD\|225191
NZ_CP035503.1\|WP_142820988.1\|4343733_4345752_-\|acetoacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|235134
NZ_CP035503.1\|WP_142820983.1\|4337898_4338798_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP035503.1\|WP_142820974.1\|4328449_4329910_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224983
NZ_CP035503.1\|WP_142820977.1\|4332105_4333059_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP035503.1\|WP_142821424.1\|4342962_4343712_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NZ_CP035503.1\|WP_142820981.1\|4336339_4336846_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NZ_CP035503.1\|WP_142820986.1\|4340823_4341648_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224041

Protein	Function_ID	Function_description	E-value
NZ_CP035503.1\|WP_142820987.1\|4341659_4342877_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.47771e-83
NZ_CP035503.1\|WP_142821423.1\|4340647_4340821_+\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	2.95438e-18
NZ_CP035503.1\|WP_142820975.1\|4329976_4330444_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.24998e-15
NZ_CP035503.1\|WP_142820973.1\|4328014_4328437_+\|glyoxalase	gnl\|CDD\|319945	cd08357, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.18251e-68
NZ_CP035503.1\|WP_142820982.1\|4337389_4337884_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	2.14378e-08
NZ_CP035503.1\|WP_142820984.1\|4338879_4339422_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	4.96451e-21
NZ_CP035503.1\|WP_142820985.1\|4339529_4340648_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	5.64514e-33
NZ_CP035503.1\|WP_142820979.1\|4334359_4335229_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	3.96032e-35
NZ_CP035503.1\|WP_142820976.1\|4330440_4332036_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.69724e-109
NZ_CP035503.1\|WP_142820972.1\|4325519_4327847_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|376913	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase.	0
NZ_CP035503.1\|WP_142821422.1\|4336973_4337393_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.70561e-15
NZ_CP035503.1\|WP_168226791.1\|4333076_4334354_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	4.19823e-49
NZ_CP035503.1\|WP_142820980.1\|4335225_4336299_-\|peptidase-M29	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	0.00483208
NZ_CP035503.1\|WP_142820988.1\|4343733_4345752_-\|acetoacetate--CoA-ligase	gnl\|CDD\|235134	PRK03584, PRK03584, acetoacetate--CoA ligase.	0
NZ_CP035503.1\|WP_142820983.1\|4337898_4338798_+\|EamA-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	6.96517e-14
NZ_CP035503.1\|WP_142820974.1\|4328449_4329910_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	9.12459e-108
NZ_CP035503.1\|WP_142820977.1\|4332105_4333059_+\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	6.43401e-34
NZ_CP035503.1\|WP_142821424.1\|4342962_4343712_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	5.08862e-59
NZ_CP035503.1\|WP_142820981.1\|4336339_4336846_+\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	2.24563e-53
NZ_CP035503.1\|WP_142820986.1\|4340823_4341648_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.37966e-102

>NZ_CP035503.1|WP_142820981.1|4336339_4336846_+|flavin-reductase-family-protein
MAPRKASPPNFSQREFRASLSMFATGVTIVTARTTTGELLGLTANSFNSVSLQPPLVLWSLARTAGAMAVLTHASHYAINILAADQKILAERFSSRGADRWAGVTFTEGVGGAPVLTGAAATFECFNRSRYEEGDHVIFVGEVEHCTHRAGASPLLFHGARYYTEHPL
>NZ_CP035503.1|WP_142820980.1|4335225_4336299_-|peptidase-M29
MLQQRTEPAWIDAFEAVLRRCALQSGDTVAILCESQSRPVLPELARLAAARLGARSFTLVLPSVFETKQPVARSTGASIAIQNIAPVIAALAGSTLVVDCTVEGLMHAPELPAILQGVSGRQPRIVYVSNEHPEALVRLLPDEATEARVKDHVKRLRAASTMRVTSAAGTDLSIALQGAHGKAVVGGNWGSTTRPGTLTHWPGGLALAFPAAGSVNGCLVLAEGDVNLTFKRYIERPITLTIEHDYIAKIEGAGVDAELMRSYIAAWSSREGDRDTYAVSHVGYGLNPAARWDSMALYDKRDFNGTELRAFAGNFLYSTGANEVAGRYTQGHFDLPMRHCTVALDGAIVIDQGQVVA
>NZ_CP035503.1|WP_142820979.1|4334359_4335229_-|alpha/beta-fold-hydrolase
MTPIPTFATLGAGPTILMLHGIGGGNLAFAPQVETFAASGYRAVAWDMPGYGHSAPIEPYTFKGLAQSCIALIEGLLASDDERRRAAPRREGPLGGQQRTRSDQRGGIILLGHSMGGMVAQEVVARRPELVNRLILCGTSPAFGKPDGDWQRDFVAQRTAPLDAGQSMAEMADSLVPQMIGPGSLPEGVKLATHCMAQVSPATYRRALQALVTFDRKANLPNIHVPTLLVAGEFDKNAPPAVMKKMAGQIAGSRYAELAGVGHLQNLEAPDEFDALVLDFLASSHKNLH
>NZ_CP035503.1|WP_168226791.1|4333076_4334354_-|acyl-CoA/acyl-ACP-dehydrogenase
MGRELSAMNVVASLSFTPAVGDLPFTSQQCALLTLAHELGRDKFAPRAPQWDESATFPFANYDDLRETGLLGLCIPEAHGGLGADYATYMMVAAEIGRFCGATALTWNMHICSTLWTGVLADGIAMTGAQRAEHVRRRDLHFARVVNEGAIYAQPFSEGSAAAAGRAPFGTTARKVEGGWLINGKKIFASLSGAADYYGVLCTEDKGDQHPDAHDTLYISVPATAGGFSISGDWNPLGMRGTVSRNLTFKDVFVGDDEQLMPRGIYFKGAQTWPAMFFTLSPTYLGIANAAYDFTVRYLRGEVPGEPPVKRRQYPTKQIAVAQMRIQLESMRSLFTRAIAEAKPNPSKDEKLRLYAAHYSVMEGANDIARLALRTCGGQSMMKHLPLERLYRDSRCGALMLPWTAELILDRMGRETLYEAGERDE
>NZ_CP035503.1|WP_142820977.1|4332105_4333059_+|hypothetical-protein
MDITAIIQAIQQHAEWVVFVSVLMQQVGLPVPAVPTLLVAGSLAASSSQATQMLAAAVLASVLADGIWYLAGRAFGYRILSGLCRLSINPGSCVSETEARFMRWGVWSLVIAKFVPGFSTVAPPIAGSLRMPLPSFLAAAGLGAALWAGLAILVGWWWRAQVEIAINAMSSHGASLVVVIALALAAWLLWKLWQKYRFGQMQTIPHITPSELVAALASDAPPLLLDFRGAALIAQTGPLAGAAQASLDDLPRAVSHWAKGRDIVTLCACPEDATAVRAAHGLRKLGYTSVRPLKGGYDSWVRHLGQQTGALAPAATP
>NZ_CP035503.1|WP_142820976.1|4330440_4332036_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSAASITGAGNIAAAPAAGVPHRRMITLSIMLATIMQALDTTIANVALPHMQGSLQASQDQIMWVLTSYIVASAITLPLTGWLCGQWGRRRVFIVSVIGFTIASALCGLSTSLVGIVLARLLQGVFGAALVPLSQAVLLDINPREKVGQAMAIWGAGIMVGPILGPLLGGWLTENYNWRWVFFINLPVGLFALWGIARYLPESRPGRERLDIFGFATLSLAIGMLQLFLDRGQQLDWFDSWEIKLEAAAALVAFAFFVVHTWTAQGVSFFDRSLLKDRNFVTGLLFAFIVGMILYGTMALLPNLLQSLMDYPVIYTGEVTAPRGVGTMLAMIVVGRLVHRIDVRAIMALGFGLTAFALWQMTHLTLQMDANLIIVSGFIQGLGIGFTFVPLSTATFATLAPVLRHQGTPIYSLLRNIGSSVGISIVQALLTRGADTAHAQLAATVVPGNQGLVNLPSMLDPGTTTGLAILNAEVTRQGALIGYINDFSIMTVLTLAAIPLLLVMSSPRHTPAAVVGAIDADEAAAAVEVPH
>NZ_CP035503.1|WP_142820975.1|4329976_4330444_+|MarR-family-transcriptional-regulator
MKRDFSQRFGFLVNDVAKLYGEHFDRLARERIGLSRAQVRLLGALAMHGNERPLSQIELAHRLGLSAMGVATLCDRMAAAGWIRRRPSATDRRINEVHLEPRAEAALDTALSIGDTLHARVLAGLTPAERTQLLTLLGKARRGLLDLPADAQVPG
>NZ_CP035503.1|WP_142820974.1|4328449_4329910_-|NAD(P)-binding-domain-containing-protein
MSTIEVAIIGAGIGGLCAAIRLRAAGVTSLVVLERASEVGGTWRDNTYPGCACDVPSHLYSLSFEPNRGWTRPYSQQAEIQAYIRRVVRQYGLDAVIRFGQEVGALRWDASAQHWQIERAGQPMLQARHVIVATGPLNKPLLPKVPGLDTFDGPAFHTSQWRHDVDLRGKRIAVVGTGASAVQVVPEIASAAAHLTVFQRTPGWVLPRRDRPYGPLRRWLYAHVPGLQTLVRWRIYWFNEWIGMGFLGSARMQALLRRLALQHLRRQVKDAALRAALTPHFNPGCKRLLFSNTWFRALQQPNVSLVTQAVARVTPQGVVGSDGRLHPCDVIIWGTGFRATEFITPLCIYGERGEELSERWRAQPAATRLGITVAGFPNLFMLVGPNTGLGHNSIIFMIEAQVNYIVDALRSLCRRGQATLRLRPEIQTENYAVMQQKMKSTVWSSGCHSWYQNADGRIDTLWPGFTWDYWRQTRRFDPAHYEGAPR
>NZ_CP035503.1|WP_142820973.1|4328014_4328437_+|glyoxalase
MSPLYPFHLAFPVTSLAAARAFYGDLLGCPEGRSSDDWVDFDFHGHQIVAHLSPSEAGHHNTSAVDGDNVPVRHFGLVLPMTEWHALADKLRAAGTRFVIEPHVRFKGQVGEQATMFFLDPCGNAIEFKAFADPSRLFAK
>NZ_CP035503.1|WP_142820972.1|4325519_4327847_-|molybdopterin-dependent-oxidoreductase
MNNDTNPTRFGSGQAVRRLEDEGLLTGKGSYADDLMPANQAYLCFVRSPYPHARIASTDVAAAQGMPGVLLVLTGADLVAAGVKPIPGVAGFVRADGSAGATPPRRALAHERVRFVGEAVAAVVAQTLQQARDAAEAIVVDFEELPMVVNLADATAPGAPVLCDAAPDNISAEMRHGDANATAAAFARAAHVVALDVTNQRVAALTLEPRTVLASFDKASGRLTIHLSTQMPSGARDTVSDALGLPHEQVRVVVGDVGGGFGMKTGAYPEDVVAAYSARTLKCAVKWAAERSEEFLSSAHGRDVQSHTELALDEHGKILALRIASFANVGAYATGVGVAIQLLIGPWVQTSVYDIQTIDFHFKAVLTNTAPTGAYRGAGRPEAIFNMERLMDEAARQTGIDRVELRRRNFIRPEQMPYKNPMGQTYDTGKFEHVMDQGLALADWNGFAARAAASKARGKLRGLGISTFLEWTGGNVFEERVTVSVQADGIIEVYSAVNAMGQGIATSLAQLVVDAFGVPIDKVRVVLGDTDRGNGFGSAGSRSLFTGGSAMRVGADRTIEKAKQLAAKELEAAAEDIQYANGTFKVAGTDLELDLFALAARQPEQRIFMDSTSSVAGPTWPNGCHVSEVEIDPQTGAVAVVAYASVNDVGRVVNPMIVRGQLDGGAVQGIGQALHEHVVYDRETGQLVTGSLMDYCAPRADDVPAFRHELDESSPCLNNALGVKGVGELGTIGAVPSVVNAVADALARGGHASQAPGLQMPLTAVKIWQSLQAAG
>NZ_CP035503.1|WP_142821422.1|4336973_4337393_+|MarR-family-transcriptional-regulator
MTARRFVDGYLGYLLGQANHAVYKDFDREVRAAGLSSIEWRVLATLHDSAPLAVSQLALEVLSKQPTVTKLVQRMSEQGWVRLAADPGDQRRTLVAITAAGQAVVKPLIEKAKQHEAQTLRVLNATETVALKKLLGKLV
>NZ_CP035503.1|WP_142820982.1|4337389_4337884_+|BON-domain-containing-protein
MKAAPALLCLTGFWVGLAHAQSAPEKKNWFDDPFFQVSSGLRACPVPEGPLLTQDEARAVEHWRAERGTSCYQAGRCRLPNSYLYDKGLAAPVAAALAAVPGVQTGSVWVTIQRRWVFLQGCVATPAQITALQQAAQAVPDVEIVVPMLLVGTSGKPRYDVRQP
>NZ_CP035503.1|WP_142820983.1|4337898_4338798_+|EamA-family-transporter
MTSRKTHLDTLAITLLLGCCVFWGFQQVLLKATLPEVPPVFQAGIRFVGATALLWLWCVARGIKLFGSDGTLQAGLVAGVLFAAEFACIYIGLQFTTASRLTVFLYTSPFWVAALVPIWARAERMRPSQWLGMACAFAAVVFAFEEGLGAGTPDTWLGDLLGLAAGMMWGLTTVVIRTTSLIRVSAEKMLFYQVAVSALALPFLSLALGEPWVWHFSAFAITSLAVQTVIGAFVSYLAWMWMLGRYPATKISVFVFLTPLFALLFGALWLKEPVTLNLIAALVLVAGGIVLVSRRPEKA
>NZ_CP035503.1|WP_142820984.1|4338879_4339422_+|carboxymuconolactone-decarboxylase-family-protein
MSRLAIQTAESAPAETRERLVNAEKNNGFLPNLLGVLANAPTALETYQVVSAINARNGLSATEREVIQITAAARNGCGFCVAGHTAIARKKLALPEEVIAALRNTQALRDPKLNALALFTLAVLEQKGRVSDAELGAFLKAGYSQASVLEVVLGVSLATLCNYANNLAQTPLNPELQAFA
>NZ_CP035503.1|WP_142820985.1|4339529_4340648_+|acyl-CoA-dehydrogenase
MSQLDVPVAMLDAVSAQVRTELAPLVGAIDQEGLYPAEYLQHLGALGGFGASVPVEHGGSGLGLATQIDVTTRVGSECGATAFLVWCQSTCAWYLQHAPNPAVRERYLKSVAQGTLFAGTGMSNAVKHLAGLEKIQLHAARRDGGYVVSGNLPWVSNVGADHLIIVTAAVENAGYVMFAVRGDAAGLHLHPCPEFSGLEGTQTLNLRFKEVQIGSDDVLAHPHQFEAYMARIKAGFVLGQAGMGFGVIEGSLKTIRESNASNAGVNAFLDDQGSELAAELAQLKARAALLAHQAQTGHAPIIEALKLRARASELTLRAANSAVLHAGAKGYLMRHPAQRRLREAVFVAIVTPALKHLRKEIHDLEQLQAQAA
>NZ_CP035503.1|WP_142821423.1|4340647_4340821_+|rubredoxin
MTQAAQWMCSPCGFIYDETVGMPEDGIPAGTPFESIPDDWECPDCGVGKADFFRVPD
>NZ_CP035503.1|WP_142820986.1|4340823_4341648_+|ATP-binding-cassette-domain-containing-protein
MAPATATAALQQTIVLDAQQIELSYGHKSVTPVLRDFSLQLAAGEVVAVLGPSGVGKSSLLRVLAGLQVPDKGTVHVKGEPLHGPHPRLGFVFQDPSLLPWLTLEENVGFGLDFTHQARISNAEKQERVAAAIAEVDLQRARTRYPSELSGGMAQRTALARSLARQPEILLLDEPFSALDEITRSEMQALLLQITSRHQTSAILVTHDIDEALLLADRILLIGLTPGRLIDEWRIDLPHPRDEVAAELTGVRVEIVQALRQARRGIPTPNHLHS
>NZ_CP035503.1|WP_142820987.1|4341659_4342877_+|ABC-transporter-substrate-binding-protein
MKVTPSAPTSRTPAPEGRRQFLKLSTAVGAIGALPLLQTAGRALAAEQGAPVRIGYLPVTDAAPLLIAHGNKTYEAQGLEVEKPRLFRSWAQIAEAFLSGQVNVVHLLMPMTIWARYGSKAPAKVVAWNHMEGSSLTVLPEINRLSDLGGKTVAIPFWYSVHNVVLQYLLRGQGLQAISEGNPGPKQVKLVVMSPGDMLPALGTKQIAGYTVAEPFNALAETLKVGKIWRFTGDVWKDHACCVVFMHERDLEQRPQWSQKVVSSIVQAQAWIRDHRDEAAHMLAKDNPAHYTPHTYETLAQVMAPHEELAARYKASGAVEHADWKERRIDFQPYPFPSYTEELVKMLKQTIVSGRNEFLQALDPAFVARDLVDDRFVKKAIADLGGMSAFGLPNSFTRRETISKN
>NZ_CP035503.1|WP_142821424.1|4342962_4343712_+|ABC-transporter-permease-subunit
MQLLLSLGGLAALILAWGLGAHWLQQSSALASLLSPRETFESLYQLVVQNQLTLHTLTSMKRVLVSLALALVLGIPIGLAIGTSRALENSTSSAFQFLRMISPLSWMPIAVMMFGIGDGPIYFLLTFAAVWPIILNTAAGVRQLDPKWLMLAKSLSATRREMLFKIVLPGILGHILTGLRLAIGIVWIVLVPCEMLGVSSGLGYFILDTRDRLAYSELMAVIVLIGALGFALDGLAQKLCQRWSHTRKA
>NZ_CP035503.1|WP_142820988.1|4343733_4345752_-|acetoacetate--CoA-ligase
MNETKTPPHIPQIRLYQNWLREQRGLIFESYDALWRWSVSDLEAFWQSLWDYFELRSPTPHSAVLGSSKMPGAQWFPGAQSNYAQQVFRHADAAHAAGMPAIISRNEKGMPRELSWPELRRQVASLALHLKAMGVQPGDRVAAYLPNIPEAIIAFLAVVSIGGVWSICAPDMGSNAVLDRFRQIEPKVLIACDGVSYGGRDFDRTAVVAELRAALPTLTHVVAYNNLSATNVIADSEMFTRVTARNDAEVEAFEPMWLAFDHPLWIVYSSGTTGLPKPIVHGHGGLVLVGLLLNVLHNDVGCSYAANSWGERFHWYSTTGWVMWNAQMAGLLNGTTLCLYDGSPGGTQPASAGGPDWTTLWRFAAETGVTFFGAGAAFYGNCMKAGIDLQACGDLSRVRALGTTGSPLSEDVQRWGTAQFRKLGVQNIWWCNISGGTDFAGAFIGGNRELPQVPGEMQCRQLGCAVEAWNEQGQPVIGEVGELVCTQPIPSMPLYFWGDEGNRRYLSSYFDTYPNVWRHGDWLKIGANGGCIIYGRSDATINRHGLRMGTSELYSAVEALSEVLDSMVVDLEYLGRESYMPLFVVLRAGVTLDDALRAKINNAIKTALSPRFVPNDIFQVAEIPRTLSGKKQELPIKKLLLGQPIEKVLNRDAMANPGCLDWYVAFAAQRLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP035503_3	3.1\|4336884\|49\|NZ_CP035503\|CRISPRCasFinder	4336884-4336932	49	NZ_CP035503.1	3702007-3702055	1	0.98
NZ_CP035503_3	3.1\|4336884\|49\|NZ_CP035503\|CRISPRCasFinder	4336884-4336932	49	NZ_CP035503.1	32872-32920	2	0.959

1. spacer 3.1|4336884|49|NZ_CP035503|CRISPRCasFinder matches to position: 3702007-3702055, mismatch: 1, identity: 0.98

gccccccgagggggctggccttgctcggggcggcccttcgcggcggccg	CRISPR spacer
gccccccgagggggctggccttgctcggggcggcccgtcgcggcggccg	Protospacer
************************************ ************

2. spacer 3.1|4336884|49|NZ_CP035503|CRISPRCasFinder matches to position: 32872-32920, mismatch: 2, identity: 0.959

gccccccgagggggctggccttgctcggggcggcccttcgcggcggccg	CRISPR spacer
gccccccgagggggctggccttgcttggggcggccctgcgcggcggccg	Protospacer
*************************.*********** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

284997 : 293512

Acinetobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142817233.1\|284997_286578_+	anthranilate synthase component I	S4VT78	Pandoravirus	7.2e-35	29.1
WP_142817235.1\|286581_287166_+	C26 family cysteine hydrolase domain-containing family	A0A0P0IKJ1	Acinetobacter_phage	7.1e-65	61.1
WP_142817237.1\|287226_288417_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_142817238.1\|288429_289107_+	LysE family transporter	NA	NA	NA	NA
WP_142817240.1\|289149_290193_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.0e-77	45.7
WP_142817242.1\|290200_290992_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.6e-59	52.3
WP_142817244.1\|291069_291846_+	uracil-DNA glycosylase	A0A286RUF9	Beluga_whale_alphaherpesvirus	1.9e-44	45.7
WP_142817246.1\|292321_293512_+	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	2.8e-15	29.8

DBSCAN-SWA_2

714004 : 748446

Caulobacter_phage(37.5%)

transposase,integrase

attL 746412:746449|attR 749807:749844

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142817632.1\|714004_715191_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.1e-51	39.0
WP_142817633.1\|715251_715950_-	nucleotidyltransferase domain-containing protein	Q8SCS5	Pseudomonas_phage	1.1e-43	42.2
WP_142817634.1\|715951_716185_-	hypothetical protein	NA	NA	NA	NA
WP_142817635.1\|716201_716999_-	hypothetical protein	K4K650	Caulobacter_phage	1.0e-45	40.1
WP_142817636.1\|716995_717793_-	metallophosphoesterase	K4K650	Caulobacter_phage	2.2e-40	36.5
WP_142821071.1\|717800_718607_-	hypothetical protein	K4K650	Caulobacter_phage	1.3e-35	37.8
WP_142817637.1\|718603_719362_-	metallophosphoesterase	NA	NA	NA	NA
WP_142817638.1\|719361_719835_-	hypothetical protein	NA	NA	NA	NA
WP_142817639.1\|719834_720290_-	hypothetical protein	NA	NA	NA	NA
WP_142817640.1\|720286_720841_-	hypothetical protein	NA	NA	NA	NA
WP_142817641.1\|720862_722176_-	AAA family ATPase	NA	NA	NA	NA
WP_142817642.1\|722309_722684_-	hypothetical protein	NA	NA	NA	NA
WP_142817643.1\|723250_724264_-	hypothetical protein	NA	NA	NA	NA
WP_142817644.1\|724266_726783_-	hypothetical protein	NA	NA	NA	NA
WP_142817645.1\|727338_728832_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_142817646.1\|728828_729653_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.0e-34	35.5
WP_142817647.1\|729739_730879_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_142817648.1\|731536_734014_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_142817649.1\|734662_735058_-	hypothetical protein	NA	NA	NA	NA
WP_168226692.1\|735047_736253_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_168226693.1\|736227_736479_-	hypothetical protein	NA	NA	NA	NA
WP_142817651.1\|736606_736921_+	killer suppression protein HigA	NA	NA	NA	NA
WP_142821072.1\|736926_738036_+	helix-turn-helix domain-containing protein	A0A075BTZ7	Microcystis_phage	8.6e-11	40.5
WP_142821073.1\|738943_740683_-	NTPase KAP	NA	NA	NA	NA
WP_142817652.1\|741096_741720_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	8.8e-13	34.4
WP_142817653.1\|741981_744555_+	hypothetical protein	NA	NA	NA	NA
WP_142817654.1\|744499_745951_+	hypothetical protein	NA	NA	NA	NA
746412:746449	attL	NA	NA	NA	NA
WP_142817655.1\|746494_747505_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_142817656.1\|747501_748446_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
749807:749844	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3126740 : 3196874

Klosneuvirus(14.29%)

transposase,holin,integrase

attL 3129300:3129315|attR 3202242:3202257

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142819914.1\|3126740_3128360_+\|holin	glucose-methanol-choline oxidoreductase	A0A1V0SI18	Klosneuvirus	1.6e-53	30.1
WP_168226752.1\|3128405_3129680_-	MFS transporter	NA	NA	NA	NA
3129300:3129315	attL	NA	NA	NA	NA
WP_142819916.1\|3129663_3130914_-	glycolate oxidase subunit GlcF	NA	NA	NA	NA
WP_142819917.1\|3130916_3132011_-	glycolate oxidase subunit GlcE	NA	NA	NA	NA
WP_142819918.1\|3132023_3133523_-	FAD-binding protein	NA	NA	NA	NA
WP_142819919.1\|3133557_3134532_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142819920.1\|3134554_3135040_-	DUF126 domain-containing protein	NA	NA	NA	NA
WP_142819921.1\|3135036_3136278_-	DUF521 domain-containing protein	NA	NA	NA	NA
WP_142819922.1\|3136327_3137782_-	sulfatase-like hydrolase/transferase	A0A2K9L1A5	Tupanvirus	1.3e-09	28.0
WP_142819923.1\|3137826_3138618_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_168226753.1\|3138614_3140219_-\|holin	choline dehydrogenase	A0A2I2L3D3	Orpheovirus	8.9e-33	27.2
WP_142819925.1\|3140237_3141188_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_142819926.1\|3141205_3142657_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_142819927.1\|3142684_3144136_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_142821326.1\|3144256_3145507_-	MFS transporter	NA	NA	NA	NA
WP_142819928.1\|3145737_3146538_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_142821328.1\|3146534_3147587_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_142819929.1\|3147619_3148501_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	7.0e-32	36.3
WP_142819930.1\|3148674_3149031_+	DUF202 domain-containing protein	NA	NA	NA	NA
WP_142819931.1\|3149027_3149363_+	DUF202 domain-containing protein	NA	NA	NA	NA
WP_142819932.1\|3149403_3150297_+\|transposase	transposase	NA	NA	NA	NA
WP_142819933.1\|3150908_3151646_+	hypothetical protein	NA	NA	NA	NA
WP_142819934.1\|3151642_3152557_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_142819935.1\|3152635_3152941_-	hypothetical protein	NA	NA	NA	NA
WP_142819936.1\|3153133_3153466_-	hypothetical protein	NA	NA	NA	NA
WP_168226754.1\|3153462_3153627_-	hypothetical protein	NA	NA	NA	NA
WP_168226755.1\|3154772_3156872_-	acetate--CoA ligase family protein	NA	NA	NA	NA
WP_142819938.1\|3157037_3157775_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_142819939.1\|3157782_3158769_-	acryloyl-CoA reductase	NA	NA	NA	NA
WP_142821330.1\|3158781_3159945_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_142819940.1\|3160023_3160995_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142819941.1\|3161061_3162030_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142819942.1\|3162124_3163291_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_142819943.1\|3163459_3164257_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_142819944.1\|3164275_3165058_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_142819945.1\|3165982_3166849_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_142819946.1\|3167015_3168017_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_142819947.1\|3168018_3168768_-	SDR family NAD(P)-dependent oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.3e-10	31.8
WP_142821331.1\|3168903_3171114_+	acetate--CoA ligase family protein	NA	NA	NA	NA
WP_142819948.1\|3171110_3172226_+	nitronate monooxygenase	NA	NA	NA	NA
WP_142819949.1\|3172257_3173049_+	hypothetical protein	NA	NA	NA	NA
WP_168226756.1\|3173112_3174093_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142821333.1\|3174101_3174644_+	MaoC family dehydratase	NA	NA	NA	NA
WP_142819951.1\|3174764_3175100_-	hypothetical protein	NA	NA	NA	NA
WP_142821335.1\|3175278_3176103_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_142819952.1\|3177321_3177510_-	hypothetical protein	NA	NA	NA	NA
WP_142819953.1\|3177600_3178323_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_142819954.1\|3180055_3180922_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_142819955.1\|3181044_3181836_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_142819956.1\|3181865_3182975_+	nitronate monooxygenase	NA	NA	NA	NA
WP_168226757.1\|3183011_3183992_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142819958.1\|3184033_3185263_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_142819959.1\|3185275_3186505_+	CoA transferase	NA	NA	NA	NA
WP_142819960.1\|3186581_3187247_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_142819961.1\|3188028_3189504_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.2e-150	56.6
WP_142819963.1\|3190844_3192083_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	1.8e-102	48.5
WP_142819964.1\|3192262_3192811_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_142819965.1\|3193186_3193465_-	hypothetical protein	NA	NA	NA	NA
WP_142819966.1\|3193461_3194505_-	PRTRC system protein D	NA	NA	NA	NA
WP_142819967.1\|3195713_3196874_+\|integrase	integrase	NA	NA	NA	NA
3202242:3202257	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3295936 : 3348224

Catovirus(25.0%)

transposase,holin,integrase

attL 3341376:3341393|attR 3353334:3353351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142820045.1\|3295936_3297619_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	6.2e-53	31.0
WP_142820046.1\|3297672_3298482_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_142820047.1\|3298492_3299482_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142820048.1\|3299478_3300093_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_142820049.1\|3300023_3300374_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_142820050.1\|3300493_3301843_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_142820051.1\|3301854_3303237_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_168226764.1\|3303445_3304804_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_142820053.1\|3304916_3305900_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142820054.1\|3305998_3306844_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_142820055.1\|3306884_3308354_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_142820056.1\|3308361_3310275_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_142820057.1\|3311043_3311796_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.7e-07	22.1
WP_142820058.1\|3311839_3313045_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_142821353.1\|3313322_3314399_+	amidohydrolase family protein	NA	NA	NA	NA
WP_142820059.1\|3314602_3315565_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_142820060.1\|3315587_3316520_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_142820061.1\|3316531_3317890_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_142820062.1\|3318149_3318374_+	hypothetical protein	NA	NA	NA	NA
WP_168226765.1\|3318592_3318922_+	hypothetical protein	NA	NA	NA	NA
WP_142820064.1\|3318935_3319907_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_168226766.1\|3321474_3322635_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_142820066.1\|3322640_3323552_-	NAD-binding protein	NA	NA	NA	NA
WP_142820067.1\|3323710_3324769_-	amidohydrolase family protein	NA	NA	NA	NA
WP_142820068.1\|3324782_3325532_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-09	23.1
WP_142820069.1\|3325506_3327303_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.1e-13	24.7
WP_142820070.1\|3327299_3328223_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_142820071.1\|3328229_3329420_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_142820072.1\|3329734_3330667_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_142820073.1\|3330727_3331276_-	hypothetical protein	NA	NA	NA	NA
WP_142820075.1\|3331707_3333696_+	NAD-binding protein	A0A077SLF7	Escherichia_phage	6.1e-23	31.5
WP_142820076.1\|3333705_3334731_+	aldo/keto reductase	NA	NA	NA	NA
WP_142821354.1\|3334831_3336550_+	carboxylesterase family protein	M1PNU1	Moumouvirus	3.4e-30	32.8
WP_142820077.1\|3336584_3336884_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_142821356.1\|3336958_3337375_+	hypothetical protein	NA	NA	NA	NA
WP_168226767.1\|3337498_3337813_-	hypothetical protein	NA	NA	NA	NA
WP_142821358.1\|3337727_3339416_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	8.1e-53	29.7
WP_142820079.1\|3339432_3340134_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_142820080.1\|3340144_3340908_-\|transposase	IS5 family transposase	NA	NA	NA	NA
3341376:3341393	attL	NA	NA	NA	NA
WP_142820081.1\|3341456_3341804_+	hypothetical protein	NA	NA	NA	NA
WP_142820082.1\|3341800_3342142_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_142820083.1\|3342232_3343582_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	5.7e-73	44.0
WP_142820084.1\|3343594_3345667_-	recombinase family protein	NA	NA	NA	NA
WP_168226768.1\|3345653_3345863_-	hypothetical protein	NA	NA	NA	NA
WP_142817655.1\|3346272_3347283_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_142817656.1\|3347279_3348224_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3353334:3353351	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3925761 : 3933226

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142820642.1\|3925761_3926868_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	6.6e-11	25.3
WP_142820643.1\|3927071_3927614_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	6.6e-57	60.7
WP_142820644.1\|3927633_3928767_-	NAD-dependent epimerase/dehydratase family protein	E3T4Y8	Cafeteria_roenbergensis_virus	2.3e-67	40.2
WP_142820645.1\|3928763_3930191_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.1e-48	26.8
WP_142820646.1\|3930187_3931087_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.4e-98	59.6
WP_142820647.1\|3931246_3932149_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.2e-28	34.3
WP_142820648.1\|3932155_3933226_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	8.7e-85	49.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP035503

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection