CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041512	Shigella boydii strain KCCM 41690 plasmid unnamed, complete sequence	0 crisprs	RT	0	0	1	0
NZ_CP041513	Shigella boydii strain KCCM 41690 chromosome, complete genome	3 crisprs	DEDDh,cas3,DinG,cas5,cas6e,cas2,csa3,c2c9_V-U4	0	2	21	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2677 : 82376

Stx2-converting_phage(36.84%)

transposase,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088895425.1\|2677_3905_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000850663.1\|5232_5973_-	PAP2 family phosphatase PhoN2	A0A1B1IUP6	uncultured_Mediterranean_phage	2.6e-11	28.9
WP_001046939.1\|6301_7168_-	type 3 secretion system effector OspB	A0A0P0ZCT1	Stx2-converting_phage	9.4e-29	32.7
WP_167549346.1\|7646_8874_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	3.2e-176	98.7
WP_094106539.1\|9215_10372_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.7
WP_005005342.1\|10703_11651_-\|protease	omptin family outer membrane protease IcsP	NA	NA	NA	NA
WP_000625263.1\|13238_13931_+	type III secretion system effector cysteine methyltransferase OspZ	NA	NA	NA	NA
WP_000405248.1\|15199_15682_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010921625.1\|15672_15975_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_000019158.1\|16246_16519_+	hypothetical protein	NA	NA	NA	NA
WP_136952279.1\|16661_17875_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.2e-169	100.0
WP_000701110.1\|19469_20924_-	type 3 secretion system effector OspC2	NA	NA	NA	NA
WP_094096542.1\|21348_22192_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.4e-23	50.0
WP_000957863.1\|23135_23324_+	hypothetical protein	NA	NA	NA	NA
WP_134796874.1\|23333_24533_+\|transposase	IS91-like element ISSbo1 family transposase	NA	NA	NA	NA
WP_000130973.1\|26011_26869_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001365705.1\|26861_26936_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_000083819.1\|27159_27420_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_000766818.1\|27659_28250_-	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_012421743.1\|29068_29275_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_011379083.1\|30024_30237_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_005056178.1\|30367_30928_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_000205722.1\|30982_31729_-	conjugal transfer pilus acetylase TraX	A0A077JBM8	Xanthomonas_phage	5.4e-09	32.0
WP_039058931.1\|31748_36620_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_171548087.1\|36606_36900_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_000450530.1\|37103_37331_+	toxin-antitoxin system antitoxin VapB	NA	NA	NA	NA
WP_000911319.1\|37330_37729_+\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_012421771.1\|42729_43680_-	virulence factor VirK	NA	NA	NA	NA
WP_005027207.1\|43684_44773_-	putative hexosyltransferase CapU	NA	NA	NA	NA
WP_000931198.1\|44775_45618_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_004996477.1\|45981_46098_-	hypothetical protein	NA	NA	NA	NA
WP_039058926.1\|47016_47502_-	protein kinase	NA	NA	NA	NA
WP_000079956.1\|47753_48023_-	hypothetical protein	NA	NA	NA	NA
WP_012421769.1\|48230_49868_-	T3SS effector E3 ubiquitin-protein ligase IpaH9.8	NA	NA	NA	NA
WP_001159860.1\|50260_50566_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813626.1\|50567_50786_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_012421738.1\|51378_51651_+	hypothetical protein	NA	NA	NA	NA
WP_000099170.1\|54066_55605_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|55653_56001_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|55997_56378_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000124079.1\|58208_58574_+	hypothetical protein	NA	NA	NA	NA
WP_024258531.1\|58573_59761_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000865087.1\|60298_60586_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.7e-40	88.4
WP_000483533.1\|60585_60897_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2I6TCA4	Escherichia_phage	5.0e-49	95.1
WP_134797190.1\|61360_62557_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000957717.1\|62926_63193_-	hypothetical protein	NA	NA	NA	NA
WP_005116773.1\|64561_65350_+	AraC family invasion system transcriptional regulator VirF	NA	NA	NA	NA
WP_073692982.1\|65291_65714_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.5e-51	96.3
WP_012421744.1\|67661_69389_-	hypothetical protein	NA	NA	NA	NA
WP_011114782.1\|70694_70847_-	hypothetical protein	NA	NA	NA	NA
WP_089519923.1\|72963_73146_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.5e-16	71.2
WP_004967149.1\|73165_74767_+\|transposase	IS66-like element ISSfl3 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-148	61.5
WP_000607008.1\|75422_76061_+	hypothetical protein	NA	NA	NA	NA
WP_167549346.1\|76532_77760_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	3.2e-176	98.7
WP_134802537.1\|78144_79313_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	9.3e-181	99.0
WP_011114751.1\|79985_80270_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_000501969.1\|80257_80743_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001072392.1\|80783_82376_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.8e-172	61.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041513

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041513_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041513_1

2820404-2820545

Orphan

Consensus_repeat	Method
AATGCCTGATGCGACTCTTGTCGCGTCTTATCATGCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041513_1

>merge|NZ_CP041513|1|2820404-2820545|CRISPRCasFinder
AATGCCTGATGCGACTCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACA

>NZ_CP041513|1|1|2820404-2820545|CRISPRCasFinder
AATGCCTGATGCGACTCTTGTCGCGTCTTATCATGCCTACA	GGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCAC
AATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041513.1\|WP_000105858.1\|2829173_2830190_-\|lipoate--protein-ligase-LplA	unknown	unknown	gnl\|CDD\|179655
NZ_CP041513.1\|WP_000566153.1\|2828992_2829142_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041513.1\|WP_001365356.1\|2824415_2825195_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP041513.1\|WP_001403902.1\|2811907_2812144_+\|DUF1435-domain-containing-protein	unknown	unknown	gnl\|CDD\|369291
NZ_CP041513.1\|WP_012421649.1\|2817498_2818104_+\|molecular-chaperone-OsmY	unknown	unknown	gnl\|CDD\|182556
NZ_CP041513.1\|WP_000870695.1\|2814748_2815426_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|181865
NZ_CP041513.1\|WP_000175943.1\|2815516_2817106_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP041513.1\|WP_000490275.1\|2818230_2818392_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP041513.1\|WP_000204018.1\|2813905_2814319_+\|DNA-polymerase-III-subunit-psi	unknown	unknown	gnl\|CDD\|180735
NZ_CP041513.1\|WP_001092469.1\|2814287_2814734_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|181904
NZ_CP041513.1\|WP_001132955.1\|2830967_2831936_+\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
NZ_CP041513.1\|WP_000224877.1\|2827998_2828718_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP041513.1\|WP_000124612.1\|2830217_2830862_-\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
NZ_CP041513.1\|WP_000563080.1\|2819583_2820366_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|171118
NZ_CP041513.1\|WP_001272296.1\|2812771_2813803_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	unknown	unknown	gnl\|CDD\|181902
NZ_CP041513.1\|WP_001299187.1\|2818513_2819587_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|227013
NZ_CP041513.1\|WP_094096485.1\|2822786_2823934_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP041513.1\|WP_000477811.1\|2825321_2826644_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP041513.1\|WP_001088380.1\|2820579_2821443_-\|YjjW-family-glycine-radical-enzyme-activase	unknown	unknown	gnl\|CDD\|274938
NZ_CP041513.1\|WP_000816471.1\|2826695_2827919_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430

Protein	Function_ID	Function_description	E-value
NZ_CP041513.1\|WP_000105858.1\|2829173_2830190_-\|lipoate--protein-ligase-LplA	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
NZ_CP041513.1\|WP_001365356.1\|2824415_2825195_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
NZ_CP041513.1\|WP_001403902.1\|2811907_2812144_+\|DUF1435-domain-containing-protein	gnl\|CDD\|369291	pfam07256, DUF1435, Protein of unknown function (DUF1435). This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.	1.11074e-25
NZ_CP041513.1\|WP_012421649.1\|2817498_2818104_+\|molecular-chaperone-OsmY	gnl\|CDD\|182556	PRK10568, PRK10568, molecular chaperone OsmY.	1.23098e-101
NZ_CP041513.1\|WP_000870695.1\|2814748_2815426_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	2.28612e-171
NZ_CP041513.1\|WP_000175943.1\|2815516_2817106_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP041513.1\|WP_000490275.1\|2818230_2818392_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	4.97087e-08
NZ_CP041513.1\|WP_000204018.1\|2813905_2814319_+\|DNA-polymerase-III-subunit-psi	gnl\|CDD\|180735	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated.	5.48557e-70
NZ_CP041513.1\|WP_001092469.1\|2814287_2814734_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|181904	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional.	3.46751e-110
NZ_CP041513.1\|WP_001132955.1\|2830967_2831936_+\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
NZ_CP041513.1\|WP_000224877.1\|2827998_2828718_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	4.60382e-172
NZ_CP041513.1\|WP_000124612.1\|2830217_2830862_-\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	2.8273e-151
NZ_CP041513.1\|WP_000563080.1\|2819583_2820366_+\|metal-dependent-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	2.27572e-177
NZ_CP041513.1\|WP_001272296.1\|2812771_2813803_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	0
NZ_CP041513.1\|WP_001299187.1\|2818513_2819587_+\|patatin-family-protein	gnl\|CDD\|227013	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	2.13843e-167
NZ_CP041513.1\|WP_094096485.1\|2822786_2823934_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.90611e-146
NZ_CP041513.1\|WP_000477811.1\|2825321_2826644_+\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP041513.1\|WP_001088380.1\|2820579_2821443_-\|YjjW-family-glycine-radical-enzyme-activase	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	7.94706e-165
NZ_CP041513.1\|WP_000816471.1\|2826695_2827919_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0

>NZ_CP041513.1|WP_000563080.1|2819583_2820366_+|metal-dependent-hydrolase
MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEVGLDLFGDDPQLERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLSRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG
>NZ_CP041513.1|WP_001299187.1|2818513_2819587_+|patatin-family-protein
MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVANDTLVAEVIDAPQANDPTFNNEDLA
>NZ_CP041513.1|WP_000490275.1|2818230_2818392_+|DUF1328-domain-containing-protein
MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP
>NZ_CP041513.1|WP_012421649.1|2817498_2818104_+|molecular-chaperone-OsmY
MTMTRLKISKTLRAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTEQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK
>NZ_CP041513.1|WP_000175943.1|2815516_2817106_+|peptide-chain-release-factor-3
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVSRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
>NZ_CP041513.1|WP_000870695.1|2814748_2815426_+|pyrimidine-5'-nucleotidase
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGIAKPNKKIFDYALELAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHREQPEGIAPTWTVSSLHELEQLLCKH
>NZ_CP041513.1|WP_001092469.1|2814287_2814734_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQLTQNGKMAAFAITQVVLDEATLFNIVVDPDYQRQGLGRVLLKHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM
>NZ_CP041513.1|WP_000204018.1|2813905_2814319_+|DNA-polymerase-III-subunit-psi
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAALWQQICTYEHDFFPRND
>NZ_CP041513.1|WP_001272296.1|2812771_2813803_-|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC
MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHGQVLSRQMGDNARFSLVATVDDVADCDTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANYVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG
>NZ_CP041513.1|WP_001403902.1|2811907_2812144_+|DUF1435-domain-containing-protein
MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTPVMLYHKQLRHYVLLPSCLALIAAIMLMIMNLNQG
>NZ_CP041513.1|WP_001088380.1|2820579_2821443_-|YjjW-family-glycine-radical-enzyme-activase
MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQHLTGRDNQQIKRSICLLAERGKLAELRLLVIPDQVDYLHHIDELATFIKRLGDVPVRLNAFHTHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALYL
>NZ_CP041513.1|WP_094096485.1|2822786_2823934_+|IS3-family-transposase
MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCQVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESEPFARKRA
>NZ_CP041513.1|WP_001365356.1|2824415_2825195_+|deoxyribose-phosphate-aldolase
MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQTKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY
>NZ_CP041513.1|WP_000477811.1|2825321_2826644_+|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE
>NZ_CP041513.1|WP_000816471.1|2826695_2827919_+|phosphopentomutase
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
>NZ_CP041513.1|WP_000224877.1|2827998_2828718_+|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>NZ_CP041513.1|WP_000566153.1|2828992_2829142_-|hypothetical-protein
MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGISINSLK
>NZ_CP041513.1|WP_000105858.1|2829173_2830190_-|lipoate--protein-ligase-LplA
MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITKAFFAHYGERVEAEIISPDKTPDLPNFAEIFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIAGAVR
>NZ_CP041513.1|WP_000124612.1|2830217_2830862_-|YtjB-family-periplasmic-protein
MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIARSGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTHWQQSPFLLTASKPVPEEEESEKKE
>NZ_CP041513.1|WP_001132955.1|2830967_2831936_+|phosphoserine-phosphatase
MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKLRLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK

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Crispr_ID: NZ_CP041513_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041513_2

2905443-2905558

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041513_2

>merge|NZ_CP041513|2|2905443-2905558|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>NZ_CP041513|2|2|2905443-2905558|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041513.1\|WP_000637858.1\|2916363_2917446_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129977
NZ_CP041513.1\|WP_001297366.1\|2914386_2916042_-\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP041513.1\|WP_001148406.1\|2910093_2910858_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP041513.1\|WP_001117019.1\|2899186_2902093_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP041513.1\|WP_000241244.1\|2892646_2893636_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP041513.1\|WP_012421573.1\|2909129_2910008_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP041513.1\|WP_001200567.1\|2897583_2898399_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP041513.1\|WP_000235693.1\|2911653_2913264_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP041513.1\|WP_000916323.1\|2910971_2911670_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP041513.1\|WP_000951764.1\|2907090_2908791_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP041513.1\|WP_000035668.1\|2902256_2904608_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP041513.1\|WP_000151730.1\|2905577_2907080_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP041513.1\|WP_004980421.1\|2913239_2914223_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP041513.1\|WP_000888672.1\|2904682_2905378_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP041513.1\|WP_000610901.1\|2891448_2891826_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP041513.1\|WP_000525176.1\|2898515_2899175_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP041513.1\|WP_000800466.1\|2893635_2894922_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP041513.1\|WP_001065384.1\|2891828_2892650_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP041513.1\|WP_001248770.1\|2916130_2916262_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP041513.1\|WP_000746136.1\|2894974_2897329_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158

Protein	Function_ID	Function_description	E-value
NZ_CP041513.1\|WP_000637858.1\|2916363_2917446_+\|MFS-transporter	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.36243e-157
NZ_CP041513.1\|WP_001297366.1\|2914386_2916042_-\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP041513.1\|WP_001148406.1\|2910093_2910858_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.42576e-49
NZ_CP041513.1\|WP_001117019.1\|2899186_2902093_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP041513.1\|WP_000241244.1\|2892646_2893636_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP041513.1\|WP_012421573.1\|2909129_2910008_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP041513.1\|WP_001200567.1\|2897583_2898399_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09295e-168
NZ_CP041513.1\|WP_000235693.1\|2911653_2913264_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP041513.1\|WP_000916323.1\|2910971_2911670_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.29253e-164
NZ_CP041513.1\|WP_000951764.1\|2907090_2908791_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP041513.1\|WP_000035668.1\|2902256_2904608_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP041513.1\|WP_000151730.1\|2905577_2907080_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP041513.1\|WP_004980421.1\|2913239_2914223_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP041513.1\|WP_000888672.1\|2904682_2905378_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.7375e-178
NZ_CP041513.1\|WP_000610901.1\|2891448_2891826_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP041513.1\|WP_000525176.1\|2898515_2899175_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
NZ_CP041513.1\|WP_000800466.1\|2893635_2894922_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP041513.1\|WP_001065384.1\|2891828_2892650_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.47518e-147
NZ_CP041513.1\|WP_001248770.1\|2916130_2916262_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
NZ_CP041513.1\|WP_000746136.1\|2894974_2897329_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>NZ_CP041513.1|WP_000888672.1|2904682_2905378_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQSGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMEIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP041513.1|WP_000035668.1|2902256_2904608_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLIPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP041513.1|WP_001117019.1|2899186_2902093_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLLDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP041513.1|WP_000525176.1|2898515_2899175_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP041513.1|WP_001200567.1|2897583_2898399_+|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDLMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERSVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP041513.1|WP_000746136.1|2894974_2897329_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVPLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVEHFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLDTQEMLRSNILPYQNTL
>NZ_CP041513.1|WP_000800466.1|2893635_2894922_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQVRNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPDSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP041513.1|WP_000241244.1|2892646_2893636_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP041513.1|WP_001065384.1|2891828_2892650_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGLDPAMRAENISVAQYCQMANYLAENAPLQES
>NZ_CP041513.1|WP_000610901.1|2891448_2891826_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP041513.1|WP_000151730.1|2905577_2907080_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLLKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP041513.1|WP_000951764.1|2907090_2908791_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAEKPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP041513.1|WP_012421573.1|2909129_2910008_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSDFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP041513.1|WP_001148406.1|2910093_2910858_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRQPLMPVYIDILRKVVGV
>NZ_CP041513.1|WP_000916323.1|2910971_2911670_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYQHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELLSGKASASAILGITG
>NZ_CP041513.1|WP_000235693.1|2911653_2913264_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPDEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLQQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP041513.1|WP_004980421.1|2913239_2914223_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISGWQRAVSR
>NZ_CP041513.1|WP_001297366.1|2914386_2916042_-|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP041513.1|WP_001248770.1|2916130_2916262_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP041513.1|WP_000637858.1|2916363_2917446_+|MFS-transporter
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNTIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNAPLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV

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Crispr_ID: NZ_CP041513_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041513_3

2971441-2971572

Orphan

Consensus_repeat	Method
TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041513_3

>merge|NZ_CP041513|3|2971441-2971572|CRISPRCasFinder
TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATTTTCTCGCGGACTGCCTGGCGCTGCTCAGGCGAGGCGGGCTGAATGCGCTCACGCGCTGCCTCTCTTCGCTGCTGGATCTGCGGGTTAGTCTGCATT

>NZ_CP041513|3|3|2971441-2971572|CRISPRCasFinder
TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATT	TTCTCGCGGACTGCCTGGCGCTGCTCAGGCGAGGCGGGCTGAATGCGCTCACGCGCTGCC
TCTCTTCGCTGCTGGATCTGCGGGTTAGTCTGCATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041513.1\|WP_000969917.1\|2961931_2963305_-\|aromatic-amino-acid-transporter-AroP	unknown	unknown	gnl\|CDD\|182324
NZ_CP041513.1\|WP_000384306.1\|2976140_2976503_+\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NZ_CP041513.1\|WP_000150613.1\|2984333_2985260_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP041513.1\|WP_000612626.1\|2954922_2955270_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP041513.1\|WP_039058962.1\|2973368_2975966_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP041513.1\|WP_000683335.1\|2982985_2983522_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|185321
NZ_CP041513.1\|WP_000734287.1\|2976539_2977334_-\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|235480
NZ_CP041513.1\|WP_001135158.1\|2959505_2960399_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181612
NZ_CP041513.1\|WP_000102485.1\|2969665_2971090_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP041513.1\|WP_000172017.1\|2961034_2961889_+\|beta-lactamase-regulator-AmpE	unknown	unknown	gnl\|CDD\|374997
NZ_CP041513.1\|WP_001295568.1\|2978321_2978669_-\|YacC-family-pilotin-like-protein	unknown	unknown	gnl\|CDD\|370620
NZ_CP041513.1\|WP_000996831.1\|2980491_2982780_-\|quinoprotein-glucose-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_CP041513.1\|WP_000963518.1\|2967448_2969341_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP041513.1\|WP_000003812.1\|2964770_2967434_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP041513.1\|WP_000651584.1\|2983562_2984225_-\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|182460
NZ_CP041513.1\|WP_000923726.1\|2960486_2961038_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP041513.1\|WP_073714280.1\|2955266_2955647_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
NZ_CP041513.1\|WP_000331776.1\|2963845_2964610_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NZ_CP041513.1\|WP_000818421.1\|2977349_2978216_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP041513.1\|WP_001189607.1\|2978834_2980385_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|236810

Protein	Function_ID	Function_description	E-value
NZ_CP041513.1\|WP_000969917.1\|2961931_2963305_-\|aromatic-amino-acid-transporter-AroP	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NZ_CP041513.1\|WP_000384306.1\|2976140_2976503_+\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	3.86085e-68
NZ_CP041513.1\|WP_000150613.1\|2984333_2985260_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.74383e-102
NZ_CP041513.1\|WP_000612626.1\|2954922_2955270_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	3.32963e-53
NZ_CP041513.1\|WP_039058962.1\|2973368_2975966_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP041513.1\|WP_000683335.1\|2982985_2983522_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|185321	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional.	6.06525e-121
NZ_CP041513.1\|WP_000734287.1\|2976539_2977334_-\|adenosylmethionine-decarboxylase	gnl\|CDD\|235480	PRK05462, PRK05462, adenosylmethionine decarboxylase.	0
NZ_CP041513.1\|WP_001135158.1\|2959505_2960399_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181612	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase.	0
NZ_CP041513.1\|WP_000102485.1\|2969665_2971090_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP041513.1\|WP_000172017.1\|2961034_2961889_+\|beta-lactamase-regulator-AmpE	gnl\|CDD\|374997	pfam17113, AmpE, Regulatory signalling modulator protein AmpE. AmpE is a family of bacterial regulatory proteins. AmpE in conjunction with AmpD sense the effect of beta-lactam on peptidoglycan synthesis and relay this signal to AmpR. AmpR regulates the production of beta-lactamase.	9.18031e-179
NZ_CP041513.1\|WP_001295568.1\|2978321_2978669_-\|YacC-family-pilotin-like-protein	gnl\|CDD\|370620	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS). This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440), the OutS protein of Erwinia chrysanthemi (Q01567) and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In the pilotin from this four-helix protein from enterohemorrhagic Escherichia coli, the straight helix alpha2, the curved helix alpha3 and the bent helix alpha4 surround the central N-terminal helix alpha1. These helices create a prominent groove, mainly formed by side chains of helices 1,2 and 3 suggesting this groove is important as a binding site.	8.48865e-08
NZ_CP041513.1\|WP_000996831.1\|2980491_2982780_-\|quinoprotein-glucose-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP041513.1\|WP_000963518.1\|2967448_2969341_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP041513.1\|WP_000003812.1\|2964770_2967434_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP041513.1\|WP_000651584.1\|2983562_2984225_-\|carbonate-dehydratase	gnl\|CDD\|182460	PRK10437, PRK10437, carbonic anhydrase; Provisional.	6.7035e-170
NZ_CP041513.1\|WP_000923726.1\|2960486_2961038_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	1.22173e-139
NZ_CP041513.1\|WP_073714280.1\|2955266_2955647_-\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.05554e-17
NZ_CP041513.1\|WP_000331776.1\|2963845_2964610_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	2.65103e-167
NZ_CP041513.1\|WP_000818421.1\|2977349_2978216_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	1.22337e-176
NZ_CP041513.1\|WP_001189607.1\|2978834_2980385_+\|multicopper-oxidase-CueO	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	0

>NZ_CP041513.1|WP_000102485.1|2969665_2971090_+|dihydrolipoyl-dehydrogenase
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK
>NZ_CP041513.1|WP_000963518.1|2967448_2969341_+|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIRRLVM
>NZ_CP041513.1|WP_000003812.1|2964770_2967434_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHSIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKVNPRLA
>NZ_CP041513.1|WP_000331776.1|2963845_2964610_+|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN
>NZ_CP041513.1|WP_000969917.1|2961931_2963305_-|aromatic-amino-acid-transporter-AroP
MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNSGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKTAKAVKAH
>NZ_CP041513.1|WP_000172017.1|2961034_2961889_+|beta-lactamase-regulator-AmpE
MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARVTMAGELTMINGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGIWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV
>NZ_CP041513.1|WP_000923726.1|2960486_2961038_+|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPDRKTDPGPAFDWARFRALVSKETT
>NZ_CP041513.1|WP_001135158.1|2959505_2960399_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQPLFELEGPSRVLLTGERTALNFVQTLSGAASKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVENLEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGALTKHVQALDLSMRFR
>NZ_CP041513.1|WP_073714280.1|2955266_2955647_-|IS66-family-insertion-sequence-hypothetical-protein
MQKNVNPGRRKGCPNYPPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWHEGKLLLPSSESPQLLPVTLDAAAEQPESLAEDPETLSISCEVTFRHGTLRFNGNVSEKLLTLLIQELKR
>NZ_CP041513.1|WP_000612626.1|2954922_2955270_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIPLPSGTKIWLVAGITDMRNGFNGLAAKVQTTLKDDPMSGHVFIFRGRNGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTPAQLAMLLEGIDWRQPKRLLTSLTML
>NZ_CP041513.1|WP_039058962.1|2973368_2975966_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALSHTLLIFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKADGVIFQTAV
>NZ_CP041513.1|WP_000384306.1|2976140_2976503_+|YacL-family-protein
MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK
>NZ_CP041513.1|WP_000734287.1|2976539_2977334_-|adenosylmethionine-decarboxylase
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV
>NZ_CP041513.1|WP_000818421.1|2977349_2978216_-|polyamine-aminopropyltransferase
MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPSGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQTAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQPS
>NZ_CP041513.1|WP_001295568.1|2978321_2978669_-|YacC-family-pilotin-like-protein
MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKALARDSLSLLAYVK
>NZ_CP041513.1|WP_001189607.1|2978834_2980385_+|multicopper-oxidase-CueO
MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKKFNADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV
>NZ_CP041513.1|WP_000996831.1|2980491_2982780_-|quinoprotein-glucose-dehydrogenase
MAINNTGSRRLLVTLTVLFAALCGLYLLIGGGWLVAIGGSWYYPIAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLVIPASGAVAALVVALLISGSILTWAGFNDPQEINGTLSADATPAEAISPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPKLKTNESFQHVTCRGVSYHEAKAETASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYEPTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSDEHTFTFNSPNSWAPAAYDATLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVTPTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSMPMLGGPISTAGNVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHG
>NZ_CP041513.1|WP_000683335.1|2982985_2983522_+|hypoxanthine-phosphoribosyltransferase
MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILLDE
>NZ_CP041513.1|WP_000651584.1|2983562_2984225_-|carbonate-dehydratase
MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPHFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHANHK
>NZ_CP041513.1|WP_000150613.1|2984333_2985260_+|ABC-transporter-ATP-binding-protein
MTIALELQQLKKTYLGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSLVNEKQGDRA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041513_2	2.1\|2905474\|54\|NZ_CP041513\|CRISPRCasFinder	2905474-2905527	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165411-165464	1	0.981
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4158-4217	8	0.867
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4157-4216	8	0.867
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	115798-115857	8	0.867
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4157-4216	8	0.867
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4157-4216	8	0.867
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7435-7494	11	0.817
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84259-84318	11	0.817
NZ_CP041513_2	2.1\|2905474\|54\|NZ_CP041513\|CRISPRCasFinder	2905474-2905527	54	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	72431-72484	12	0.778
NZ_CP041513_1	1.1\|2820445\|60\|NZ_CP041513\|CRISPRCasFinder	2820445-2820504	60	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40377-40436	14	0.767

1. spacer 2.1|2905474|54|NZ_CP041513|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

3. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

4. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

5. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

6. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

7. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.817

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgcac	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt-gtgcac	Protospacer
.. .**..*. ***************************************.** *.****

8. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.817

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgcac	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt-gtgcac	Protospacer
.. .**..*. ***************************************.** *.****

9. spacer 2.1|2905474|54|NZ_CP041513|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****

10. spacer 1.1|2820445|60|NZ_CP041513|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.767

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagttgg-cgca	CRISPR spacer
cactcgcaccaaaccgtaggccggataaggcgtttacgccgcatccggcaaaaagccgta	Protospacer
 ..*.*..**.***********************.***************.  .* **.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25261 : 182059

122

Stx2-converting_phage(13.51%)

tRNA,transposase,protease,integrase

attL 99664:99723|attR 164847:165184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012421555.1\|25261_26458_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000994987.1\|26452_27814_-	N-succinylarginine dihydrolase	NA	NA	NA	NA
WP_000177217.1\|27810_29289_-	succinylglutamate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000989403.1\|29285_30320_-	arginine N-succinyltransferase	NA	NA	NA	NA
WP_039080550.1\|30316_31537_-	succinylornithine/acetylornithine transaminase	A0A1V0SKB7	Klosneuvirus	4.2e-27	27.6
WP_000673918.1\|31982_32789_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_000977145.1\|35139_35847_+	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_000524080.1\|35846_36395_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_001215374.1\|36404_37571_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001299561.1\|39077_39731_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.8e-14	29.7
WP_000832679.1\|39797_41084_+	thiosulfate sulfurtransferase YnjE	NA	NA	NA	NA
WP_000085238.1\|43330_43603_-	YnjH family protein	NA	NA	NA	NA
WP_000373055.1\|43838_45182_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_001235817.1\|47241_49203_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	5.4e-40	29.2
WP_012421473.1\|49207_50251_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_000339281.1\|50367_50919_-	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_001259824.1\|51079_52936_+	signal peptide peptidase SppA	NA	NA	NA	NA
WP_001170149.1\|53102_54119_+	asparaginase	NA	NA	NA	NA
WP_001120535.1\|54129_54771_+	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L2K0	Tupanvirus	2.2e-19	34.9
WP_001046790.1\|54931_55204_-	YeaC family protein	NA	NA	NA	NA
WP_001284613.1\|55245_55659_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_000153502.1\|56000_56996_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_000483770.1\|57103_58450_+\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_004983283.1\|58517_59402_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_039059368.1\|59452_60307_-	methylglyoxal reductase YeaE	A0A2H4PQR8	Staphylococcus_phage	2.9e-22	32.0
WP_000163771.1\|60396_61143_-	scaffolding protein MipA	NA	NA	NA	NA
WP_000219706.1\|63624_64908_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	7.6e-11	36.3
WP_000616430.1\|65054_66530_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_094096769.1\|67642_68798_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.7
WP_094096770.1\|69461_70616_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.7e-65	44.4
WP_000138054.1\|70775_71279_+\|tRNA	mischarged aminoacyl-tRNA deacylase	NA	NA	NA	NA
WP_000999630.1\|71279_71384_-	hypothetical protein	NA	NA	NA	NA
WP_000460714.1\|71552_71999_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_012421563.1\|72873_74070_+	2-nitroimidazole transporter	NA	NA	NA	NA
WP_004983281.1\|74109_74457_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000691934.1\|74478_74733_-	DUF333 domain-containing lipoprotein YoaF	NA	NA	NA	NA
WP_032324829.1\|75633_75735_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_001386836.1\|75737_75812_+	protein YoaJ	NA	NA	NA	NA
WP_000512153.1\|75870_76119_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_000513737.1\|76266_76449_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_165850231.1\|76985_77405_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_072038802.1\|78430_79777_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_000978513.1\|80991_82077_+	multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase	NA	NA	NA	NA
WP_000067827.1\|84745_85870_+	carnitine monooxygenase subunit YeaW	NA	NA	NA	NA
WP_001287030.1\|85925_86891_+	carnitine monooxygenase subunit YeaX	NA	NA	NA	NA
WP_024258613.1\|86944_88060_-	ribonuclease D	NA	NA	NA	NA
WP_000758422.1\|88141_89827_-	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	1.5e-35	26.0
WP_000290574.1\|90031_90613_-	Slp family lipoprotein YeaY	NA	NA	NA	NA
WP_001220988.1\|90652_91348_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_000128854.1\|91405_93316_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.5e-92	31.9
WP_001295493.1\|93447_93792_+	RidA family protein	NA	NA	NA	NA
WP_114142302.1\|94153_94228_+	DUF1889 family protein	NA	NA	NA	NA
WP_000457334.1\|95031_95211_-	YoaH family protein	NA	NA	NA	NA
WP_000855021.1\|95284_96646_+	aminodeoxychorismate synthase component 1	S4VT78	Pandoravirus	5.8e-41	33.4
WP_000456725.1\|96649_97228_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_000624286.1\|97411_98776_+	L-serine ammonia-lyase	NA	NA	NA	NA
99664:99723	attL	NA	NA	NA	NA
WP_134796785.1\|99727_100883_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.4e-66	44.4
WP_001063816.1\|102041_103169_-\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA
WP_000150543.1\|105307_106279_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_000406926.1\|106341_107142_+	PTS mannose transporter subunit IIC	NA	NA	NA	NA
WP_000228655.1\|107154_108006_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
WP_000156249.1\|108060_108519_+	DUF986 domain-containing protein	NA	NA	NA	NA
WP_001296134.1\|108946_109513_+	manganese efflux pump MntP	NA	NA	NA	NA
WP_000010115.1\|109509_110319_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_001062678.1\|110484_110694_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
WP_001295496.1\|110706_110850_-	YobF family protein	NA	NA	NA	NA
WP_001006860.1\|112068_112356_-	YebO family protein	NA	NA	NA	NA
WP_000714550.1\|112430_112574_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
WP_001211009.1\|112732_112972_+	membrane protein	NA	NA	NA	NA
WP_001262182.1\|113114_113906_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_001127216.1\|114082_115456_+	MFS transporter	NA	NA	NA	NA
WP_000984517.1\|115501_116383_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001315679.1\|116574_118623_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	6.8e-86	33.5
WP_000431370.1\|118642_119341_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001043882.1\|119437_119935_-	L-methionine (R)-S-oxide reductase	NA	NA	NA	NA
WP_012421330.1\|120064_121348_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_024258614.1\|121316_123950_+	lipid-binding membrane homeostasis protein YebT	NA	NA	NA	NA
WP_024258615.1\|124029_125469_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_012421427.1\|125586_125823_+	DUF1480 family protein	NA	NA	NA	NA
WP_000457842.1\|125927_126119_+	YebW family protein	NA	NA	NA	NA
WP_001333468.1\|127018_127399_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612626.1\|127395_127743_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_134796786.1\|127791_129330_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-294	99.2
WP_001039895.1\|129451_129631_+	hypothetical protein	NA	NA	NA	NA
WP_077128820.1\|129631_131347_-	T3SS effector E3 ubiquitin-protein ligase IpaH3	NA	NA	NA	NA
WP_134797173.1\|133101_134258_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.4e-66	44.7
WP_071821702.1\|134380_134851_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.6e-37	50.3
WP_000976477.1\|135243_135585_-	YebY family protein	NA	NA	NA	NA
WP_000879299.1\|135597_136470_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000168747.1\|136473_136848_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916761.1\|136986_137217_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	61.8
WP_000011658.1\|137318_137975_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_000944259.1\|137998_138661_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.0e-07	41.6
WP_000073510.1\|140933_141593_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001295500.1\|141906_142263_-	protein YebF	NA	NA	NA	NA
WP_000173486.1\|142679_143858_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_000800512.1\|143913_144555_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_039080552.1\|144591_146403_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301720.1\|146637_148113_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	9.9e-79	37.3
WP_000091148.1\|149445_150888_+	pyruvate kinase	NA	NA	NA	NA
WP_088895425.1\|151023_152252_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_052270405.1\|152327_153125_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_039059824.1\|154065_154863_-	amidohydrolase	NA	NA	NA	NA
WP_077897107.1\|159089_160358_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_000777724.1\|160381_161614_-	maltose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000490384.1\|162941_163898_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_001307257.1\|164012_164501_+	hypothetical protein	NA	NA	NA	NA
WP_000435428.1\|165270_165690_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.2e-35	76.3
164847:165184	attR	NA	NA	NA	NA
WP_000624671.1\|165686_166037_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	65.5
WP_001063816.1\|167951_169079_-\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA
WP_000142784.1\|170140_170275_-	DUF1378 family protein	S5MBZ5	Escherichia_phage	3.1e-16	93.2
WP_000935508.1\|173173_174223_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.0e-183	89.6
WP_001204806.1\|174786_175167_-	antitermination protein Q	S5M7R9	Escherichia_phage	4.9e-67	100.0
WP_012421411.1\|175184_176174_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-193	98.8
WP_001061420.1\|176181_176991_-	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.3e-149	98.1
WP_000767117.1\|177010_177400_-	RusA family crossover junction endodeoxyribonuclease	K7PH72	Enterobacteria_phage	7.1e-69	100.0
WP_000066914.1\|177396_178050_-	phage N-6-adenine-methyltransferase	Q8SBE9	Shigella_phage	1.2e-126	99.1
WP_000055009.1\|178049_178538_-	PerC family transcriptional regulator	U5P0U0	Shigella_phage	1.2e-86	98.1
WP_039059392.1\|178534_179359_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	4.7e-123	99.6
WP_039059393.1\|179355_179580_-	hypothetical protein	A5LH70	Enterobacteria_phage	2.2e-38	97.3
WP_094096507.1\|179705_180874_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_000019619.1\|181315_182059_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0

DBSCAN-SWA_2

347542 : 427606

Stx2-converting_phage(35.71%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000003667.1\|347542_348130_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_001186431.1\|348126_348834_-	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000107366.1\|348852_350646_-	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001058323.1\|350642_351761_-	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_000375138.1\|352481_353141_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	54.9
WP_000904442.1\|353231_353561_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_039059410.1\|353557_353836_-	acylphosphatase	NA	NA	NA	NA
WP_000116324.1\|353930_355121_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_001295356.1\|355178_355496_+	heat shock protein HspQ	NA	NA	NA	NA
WP_000665217.1\|355540_355954_-	CoA-binding protein	NA	NA	NA	NA
WP_000847791.1\|356126_356789_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424181.1\|356884_357343_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420537.1\|357374_359429_-	DNA helicase IV	A7KV33	Bacillus_phage	5.9e-21	27.9
WP_001261235.1\|359551_359998_+	YccF domain-containing protein	NA	NA	NA	NA
WP_073692788.1\|360007_362170_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_000288710.1\|363757_364267_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_000750416.1\|364623_365664_+	porin OmpA	NA	NA	NA	NA
WP_000877160.1\|365739_366192_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156488.1\|366377_368138_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227927.1\|368206_368725_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001333468.1\|368956_369337_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612626.1\|369333_369681_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000099170.1\|369729_371268_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000759124.1\|371403_371967_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000445544.1\|371963_373604_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333187.1\|373608_374862_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053095.1\|374991_376899_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.1e-53	29.5
WP_001086505.1\|376910_379019_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224267.1\|379262_380372_+	6-N-hydroxylaminopurine resistance protein YcbX	NA	NA	NA	NA
WP_001295353.1\|380368_380911_-	cell division protein ZapC	NA	NA	NA	NA
WP_001295352.1\|381084_382095_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_165850217.1\|382205_382943_-	fimbrial chaperone	NA	NA	NA	NA
WP_000919489.1\|382908_383424_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_000730614.1\|383431_383974_-	fimbrial protein	NA	NA	NA	NA
WP_001165655.1\|383985_385056_-	fimbrial protein	NA	NA	NA	NA
WP_000750284.1\|388461_389004_-	fimbrial protein	NA	NA	NA	NA
WP_001263933.1\|389359_389935_+	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_001244336.1\|389927_390887_+	aliphatic sulfonate ABC transporter substrate-binding protein SsuA	NA	NA	NA	NA
WP_000193834.1\|393621_396234_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.3e-19	22.8
WP_001323688.1\|396499_397702_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000117881.1\|397870_399271_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.3e-82	36.1
WP_000977920.1\|399871_400960_+	porin OmpF	Q1MVN1	Enterobacteria_phage	1.8e-98	54.3
WP_001109490.1\|402555_403203_-	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA
WP_001295932.1\|403229_403778_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	7.0e-06	33.7
WP_000925987.1\|403958_405806_-	L,D-transpeptidase	NA	NA	NA	NA
WP_000624671.1\|409534_409885_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	65.5
WP_134797176.1\|409881_410301_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	5.5e-35	76.3
WP_039059439.1\|410792_415253_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_001295347.1\|415252_415957_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288841.1\|415937_417260_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001298300.1\|417256_418042_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899574.1\|418177_418957_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436922.1\|418933_419827_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011601.1\|419980_420727_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350058.1\|420723_420906_-	protein YcaR	NA	NA	NA	NA
WP_000056557.1\|420957_422190_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000570560.1\|422226_423213_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551270.1\|423209_424958_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	2.5e-57	29.8
WP_000099170.1\|426067_427606_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4

DBSCAN-SWA_3

450650 : 512319

Salmonella_phage(26.92%)

tRNA,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886694.1\|450650_451943_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.9e-94	48.9
WP_000067758.1\|452033_453377_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	9.6e-81	41.0
WP_001295343.1\|453387_453999_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_073692823.1\|454153_458125_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|458259_458754_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537414.1\|459298_460264_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_039059444.1\|460386_462153_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	F2Y302	Organic_Lake_phycodnavirus	2.1e-14	28.3
WP_039059446.1\|462153_463875_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.9e-20	25.5
WP_001241678.1\|463916_464621_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|464905_465124_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_039059447.1\|465808_468085_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.5e-166	42.2
WP_000520781.1\|468115_468436_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000410785.1\|468758_468983_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_000188179.1\|469055_471002_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
WP_000746460.1\|470998_472114_-	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_133298188.1\|472264_473221_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_004982384.1\|476077_476773_+	aquaporin Z	NA	NA	NA	NA
WP_012421264.1\|477265_478165_+	L-lysine exporter LysO	NA	NA	NA	NA
WP_000458822.1\|478308_479961_+	hydroxylamine reductase	NA	NA	NA	NA
WP_000178677.1\|479972_480941_+	NADH oxidoreductase	NA	NA	NA	NA
WP_000815362.1\|481073_482792_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.2e-31	24.0
WP_000566354.1\|482828_483830_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_001136554.1\|483840_485271_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005135189.1\|485369_486383_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001255167.1\|486379_487210_-	N-acetylmuramoyl-L-alanine amidase AmiD	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
WP_001160737.1\|487206_487530_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001270744.1\|487655_488171_+	lipoprotein	NA	NA	NA	NA
WP_000027205.1\|488388_489117_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_000756569.1\|489134_489866_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001001705.1\|489872_490589_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000464491.1\|490588_491257_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_012421270.1\|491547_492279_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039059452.1\|492453_493581_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.3e-26	27.0
WP_039080563.1\|493621_494110_-	YbjO family protein	NA	NA	NA	NA
WP_001061657.1\|494169_495015_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_001093857.1\|495011_495965_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_000995992.1\|495974_497108_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.9e-29	34.0
WP_000126072.1\|497202_498315_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000203025.1\|498665_499142_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_000684324.1\|499229_500132_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000189127.1\|500192_500915_-	nitroreductase NfsA	NA	NA	NA	NA
WP_001201560.1\|500898_501186_-	DUF1418 family protein	NA	NA	NA	NA
WP_001195237.1\|501345_501603_+	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	7.3e-22	60.7
WP_000681108.1\|501632_502010_-	hypothetical protein	NA	NA	NA	NA
WP_001024876.1\|502279_503965_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_000972391.1\|504199_504418_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001011770.1\|504508_505609_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	6.5e-176	87.7
WP_000980403.1\|505605_506091_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.3e-67	81.9
WP_039059457.1\|506087_509165_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.7
WP_000763310.1\|509157_509277_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.4e-12	87.2
WP_001281016.1\|509291_509594_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	8.2e-41	90.0
WP_001207660.1\|509648_510164_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_000046139.1\|510173_511346_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.6e-204	90.3
WP_071821609.1\|512166_512319_+	hypothetical protein	A0A0R6PIH8	Moraxella_phage	3.2e-09	68.2

DBSCAN-SWA_4

557571 : 652254

Stx2-converting_phage(26.67%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000140459.1\|557571_558768_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001267226.1\|558844_561007_+	mechanosensitive channel protein	NA	NA	NA	NA
WP_001275941.1\|561066_561993_-	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_000710619.1\|562268_562529_+	DUF1471 domain-containing protein	A0A1B2ICL8	Erwinia_phage	1.6e-05	51.0
WP_039059461.1\|562793_565076_+	catecholate siderophore receptor Fiu	NA	NA	NA	NA
WP_000990184.1\|565117_565795_+	PKHD-type hydroxylase YbiX	Q5GQB0	Synechococcus_phage	9.0e-19	29.7
WP_000146357.1\|565868_566135_+	C4-type zinc finger protein YbiI	E5G6L7	Salmonella_phage	3.1e-07	45.6
WP_039059463.1\|566418_566649_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_039059465.1\|568102_569065_-	DNA-binding protein YbiB	NA	NA	NA	NA
WP_012421244.1\|569092_571243_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	5.3e-41	25.7
WP_001145132.1\|571362_571845_+	N-glycosidase YbiA	A0A0H3TLU0	Faustovirus	1.3e-35	52.0
WP_000007125.1\|572076_573441_-	ATP-dependent RNA helicase RhlE	A0A1V0SBR7	Catovirus	9.5e-52	31.6
WP_001447036.1\|573669_574341_+	DNA-binding transcriptional regulator CecR	NA	NA	NA	NA
WP_005007432.1\|574343_575339_+	secretion protein HlyD	NA	NA	NA	NA
WP_000996087.1\|575331_577068_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-18	29.8
WP_000070142.1\|577060_578194_+	ABC transporter permease	NA	NA	NA	NA
WP_000469031.1\|578204_579311_+	ABC transporter permease	NA	NA	NA	NA
WP_000871982.1\|579272_579683_-	YbhQ family protein	NA	NA	NA	NA
WP_001113368.1\|579815_580577_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000650368.1\|580573_581815_+	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_000045445.1\|581814_582771_+	UPF0104 family protein	NA	NA	NA	NA
WP_000446934.1\|582806_583520_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_000373624.1\|583725_584430_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_000852279.1\|584566_585019_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_000598619.1\|585020_585266_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_000080885.1\|585258_585744_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_000084639.1\|585746_586259_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
WP_012421596.1\|586280_587270_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_001295302.1\|587666_588575_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	1.4e-27	31.1
WP_000042533.1\|588766_590788_-	excinuclease ABC subunit B	NA	NA	NA	NA
WP_000044861.1\|591366_592044_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_000246800.1\|592036_592792_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_000118842.1\|592778_593933_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_000951205.1\|593929_594970_-	biotin synthase BioB	NA	NA	NA	NA
WP_012421521.1\|595056_596346_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	3.4e-19	27.1
WP_000767390.1\|596404_596881_+	kinase inhibitor	NA	NA	NA	NA
WP_001091569.1\|597032_598316_+	putative acyl-CoA thioester hydrolase	NA	NA	NA	NA
WP_000444995.1\|598456_600718_-	hydratase	NA	NA	NA	NA
WP_000723642.1\|603958_605011_-	4-oxalomesaconate tautomerase	NA	NA	NA	NA
WP_000679972.1\|605194_606148_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000815426.1\|606188_607184_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_071821614.1\|607463_607574_-	DNA invertase	A0A1S6L009	Salmonella_phage	3.3e-08	87.5
WP_024258629.1\|608063_609890_+	invasion protein	NA	NA	NA	NA
WP_001039895.1\|609890_610070_-	hypothetical protein	NA	NA	NA	NA
WP_039059474.1\|610643_612050_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q8W611	Enterobacteria_phage	1.5e-39	44.2
WP_048815086.1\|612036_612525_-\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	1.7e-59	69.9
WP_088895425.1\|612671_613899_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_077897128.1\|613920_614100_-	IS1 encoded protein	A0A0C4UQV0	Shigella_phage	2.4e-16	66.7
WP_094096507.1\|614154_615322_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_134796794.1\|615606_616749_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.0e-213	99.5
WP_000099170.1\|616745_618284_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|618332_618680_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|618676_619057_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000087844.1\|619145_619238_-\|transposase	transposase	NA	NA	NA	NA
WP_094096507.1\|619725_620894_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_001281242.1\|621085_623713_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	8.1e-92	30.4
WP_000990754.1\|623859_624582_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_171767843.1\|624709_625003_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_171767844.1\|624924_625221_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_158252635.1\|625236_627228_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_158252634.1\|627270_627642_-	hypothetical protein	NA	NA	NA	NA
WP_001075163.1\|629231_631517_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2D1GNB1	Pseudoalteromonas_phage	1.9e-283	63.6
WP_000332037.1\|631663_632794_+	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	1.5e-175	79.1
WP_000135040.1\|632793_633048_+	ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE	G9IAA2	Pseudomonas_phage	2.6e-24	73.1
WP_000099170.1\|633851_635390_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|635438_635786_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|635782_636163_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000779090.1\|636663_637740_-	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	5.1e-08	46.0
WP_000948732.1\|637744_639103_-	glycerol-3-phosphate transporter	NA	NA	NA	NA
WP_000857257.1\|639375_641004_+	anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA	NA	NA	NA
WP_001209906.1\|640993_642253_+	glycerol-3-phosphate dehydrogenase subunit GlpB	NA	NA	NA	NA
WP_001000359.1\|642249_643440_+	anaerobic glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
WP_000140570.1\|643632_644535_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.5e-69	54.8
WP_000169731.1\|647703_648594_+	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase	NA	NA	NA	NA
WP_000844032.1\|648593_650246_+	lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase	NA	NA	NA	NA
WP_000638031.1\|650242_650578_+	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE	NA	NA	NA	NA
WP_000099170.1\|650715_652254_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4

DBSCAN-SWA_5

726172 : 804185

Stx2-converting_phage(30.77%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000099170.1\|726172_727711_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|727759_728107_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_134796773.1\|728103_728319_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBP6	Stx2-converting_phage	2.0e-25	88.2
WP_144039317.1\|728261_728483_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	2.1e-33	97.1
WP_000714140.1\|728824_729313_-	fimbrial protein	NA	NA	NA	NA
WP_000018471.1\|729309_729819_-	fimbrial protein	NA	NA	NA	NA
WP_000482746.1\|729834_730587_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_073714335.1\|730606_733249_-	fimbrial usher protein YfcU	NA	NA	NA	NA
WP_000213920.1\|733330_733627_-	fimbrial protein	NA	NA	NA	NA
WP_000033325.1\|733633_733894_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_001195819.1\|734568_735054_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_000531950.1\|737399_738710_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_000030901.1\|738889_739174_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_005007635.1\|739545_740886_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_012421268.1\|741350_742547_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000340709.1\|744323_744536_+	hypothetical protein	NA	NA	NA	NA
WP_000776768.1\|744717_745473_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_000368136.1\|745766_746699_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.4e-166	99.4
WP_094096507.1\|747255_748424_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_012421614.1\|749846_751385_-	multidrug efflux MFS transporter permease subunit EmrY	NA	NA	NA	NA
WP_012421564.1\|751384_752548_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrK	NA	NA	NA	NA
WP_000991370.1\|752963_753578_+	acid-sensing system DNA-binding response regulator EvgA	NA	NA	NA	NA
WP_072037222.1\|753582_757176_+	acid-sensing system histidine kinase EvgS	A0A1V0SGX0	Hokovirus	2.3e-36	32.1
WP_012421539.1\|757231_758377_-	CoA:oxalate CoA-transferase	NA	NA	NA	NA
WP_000955028.1\|758450_759395_-	transporter YfdV	NA	NA	NA	NA
WP_001283486.1\|759464_761159_-	oxalyl-CoA decarboxylase	E5ERI2	Ostreococcus_lucimarinus_virus	1.8e-23	23.6
WP_000106760.1\|761212_762463_-	formyl-CoA transferase	NA	NA	NA	NA
WP_000825604.1\|762975_763608_-	YfdX family protein	NA	NA	NA	NA
WP_000867637.1\|763903_764179_+	colanic acid biosynthesis lipoprotein YpdI	NA	NA	NA	NA
WP_000639883.1\|764255_764498_-	YfdY family protein	NA	NA	NA	NA
WP_000484403.1\|764850_765771_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.8e-75	54.4
WP_010723117.1\|766126_766198_+	membrane protein YpdK	NA	NA	NA	NA
WP_000785913.1\|766262_767501_-	alanine transaminase	NA	NA	NA	NA
WP_000544369.1\|767877_769575_+	two-component system sensor histidine kinase YpdA	NA	NA	NA	NA
WP_001295458.1\|769589_770324_+	two-component system response regulator YpdB	A0A2R2ZGH8	Clostridioides_phage	3.6e-13	25.4
WP_000646846.1\|770336_771194_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000173247.1\|774759_775845_-	aminopeptidase	NA	NA	NA	NA
WP_000985336.1\|775859_777107_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA
WP_000038456.1\|777128_777455_-	fructose-like phosphotransferase enzyme IIB component 1	NA	NA	NA	NA
WP_000598932.1\|777673_778639_-	glucokinase	NA	NA	NA	NA
WP_000903152.1\|778842_780099_+	ion channel protein	NA	NA	NA	NA
WP_000490072.1\|780213_780540_+	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_000186369.1\|780680_781919_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_000376337.1\|782254_783457_+	nucleoside permease NupC	NA	NA	NA	NA
WP_000483770.1\|783503_784850_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_012421648.1\|789012_789357_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001341599.1\|789379_789751_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000695657.1\|789801_791217_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_000201413.1\|791993_792335_+	FlxA-like family protein	NA	NA	NA	NA
WP_001109794.1\|792325_793252_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000765617.1\|793341_794340_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_000410201.1\|794336_794555_-	DUF3820 family protein	NA	NA	NA	NA
WP_039059483.1\|794556_796572_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	5.0e-150	43.4
WP_005030504.1\|796641_797628_-	cell division protein ZipA	NA	NA	NA	NA
WP_000254839.1\|797857_798619_+	sulfate transporter CysZ	NA	NA	NA	NA
WP_000034402.1\|798803_799775_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	2.8e-74	51.0
WP_000487600.1\|800158_800416_+	phosphocarrier protein Hpr	NA	NA	NA	NA
WP_000623148.1\|800460_802188_+	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	9.6e-17	31.1
WP_000522245.1\|802228_802738_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_000483770.1\|802838_804185_+\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

926054 : 987123

Stx2-converting_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940019.1\|926054_926795_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553446.1\|926913_927717_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_012421377.1\|927861_928716_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000983001.1\|928906_930202_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_000244213.1\|930193_931333_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_039059495.1\|932710_933838_+	ROK family protein	NA	NA	NA	NA
WP_000919159.1\|933901_935155_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-101	52.7
WP_000883127.1\|935482_936673_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_000717694.1\|936717_937056_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_001295369.1\|937116_938451_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	3.9e-10	37.3
WP_001215861.1\|938440_939154_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001298980.1\|939318_940746_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.3e-16	24.9
WP_000970129.1\|941303_945191_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.3e-130	58.9
WP_039059496.1\|945447_947004_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001295367.1\|947000_947537_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190655.1\|947561_948197_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001013779.1\|948405_949254_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001196283.1\|949309_949570_+	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	1.1e-17	52.3
WP_000128776.1\|949763_949844_-	type I toxin-antitoxin system toxin ShoB	NA	NA	NA	NA
WP_000986029.1\|950263_950644_-	holo-ACP synthase	NA	NA	NA	NA
WP_001364795.1\|950643_951375_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399399.1\|951386_952115_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000020737.1\|952126_953032_-	GTPase Era	NA	NA	NA	NA
WP_001068343.1\|953028_953709_-	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	5.6e-21	39.6
WP_039059497.1\|953981_954956_-	signal peptidase I	NA	NA	NA	NA
WP_000790168.1\|954971_956771_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	41.9
WP_000589070.1\|956968_957448_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812031.1\|957444_958401_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168459.1\|958400_959051_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_012421474.1\|959083_959659_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001303621.1\|959655_959811_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_073714307.1\|960066_960630_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_088895425.1\|960705_961933_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_094096479.1\|961980_963137_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.7
WP_005007860.1\|964276_965014_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219197.1\|965145_966480_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_088895425.1\|967078_968306_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000099170.1\|968536_970075_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|970123_970471_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|970467_970848_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_001300818.1\|971322_971646_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949271.1\|971691_973047_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000083004.1\|973160_975821_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_012421387.1\|975852_976551_-	DTW domain-containing protein	NA	NA	NA	NA
WP_001098726.1\|976619_977039_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_039059498.1\|977245_978283_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001262716.1\|978330_979020_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
WP_000627807.1\|979325_979709_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_000189207.1\|979764_980352_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_167549350.1\|980475_981703_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	99.0
WP_001072392.1\|982209_983802_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.8e-172	61.2
WP_000623347.1\|983832_984183_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.4e-39	64.7
WP_000435414.1\|984179_984599_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.9e-36	77.3
WP_001333468.1\|984811_985192_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612626.1\|985188_985536_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000099170.1\|985584_987123_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4

DBSCAN-SWA_7

1221659 : 1289356

Shigella_phage(33.33%)

holin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088895425.1\|1221659_1222887_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_039059550.1\|1224708_1226034_+	galactarate/glucarate/glycerate transporter GarP	NA	NA	NA	NA
WP_000445064.1\|1226823_1227597_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_001303675.1\|1227626_1228517_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
WP_039059552.1\|1228613_1229759_+	glycerate 2-kinase	W6LM47	Streptococcus_phage	2.2e-49	41.1
WP_158250041.1\|1232351_1232510_-	hypothetical protein	NA	NA	NA	NA
WP_000145836.1\|1234082_1234427_-	DNA-binding transcriptional activator TdcR	NA	NA	NA	NA
WP_000104209.1\|1234615_1235554_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_000548347.1\|1235652_1236642_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_000107720.1\|1236663_1237995_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_012421542.1\|1238020_1239229_+	propionate kinase	NA	NA	NA	NA
WP_000861733.1\|1239262_1241557_+	2-ketobutyrate formate-lyase/pyruvate formate-lyase	A0A2P0VNR5	Tetraselmis_virus	7.4e-158	40.8
WP_000719990.1\|1241570_1241960_+	enamine/imine deaminase	NA	NA	NA	NA
WP_000622115.1\|1242031_1243396_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_000401562.1\|1244446_1245778_+	HAAAP family serine/threonine permease	NA	NA	NA	NA
WP_039080584.1\|1245805_1247116_+	serine dehydratase subunit alpha family protein	NA	NA	NA	NA
WP_001295544.1\|1247249_1247414_-	hypothetical protein	NA	NA	NA	NA
WP_000633577.1\|1247436_1248138_-	pirin family protein	NA	NA	NA	NA
WP_001198781.1\|1249952_1250321_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000099170.1\|1251304_1252843_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_039058912.1\|1252891_1253239_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.2e-61	99.1
WP_001333468.1\|1253235_1253616_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000384145.1\|1253788_1254154_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000531201.1\|1254446_1255433_-	glutathionyl-hydroquinone reductase YqjG	NA	NA	NA	NA
WP_000603617.1\|1255502_1255985_-	DoxX family protein	NA	NA	NA	NA
WP_000096086.1\|1256080_1256380_-	YqjK-like family protein	NA	NA	NA	NA
WP_000785722.1\|1256369_1256774_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_000031415.1\|1256776_1257082_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_001297156.1\|1257119_1257488_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_001166768.1\|1257634_1258018_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_000422149.1\|1258021_1258684_-	DedA family protein	NA	NA	NA	NA
WP_000406490.1\|1259028_1259805_-	transcriptional regulator ExuR	NA	NA	NA	NA
WP_148722341.1\|1260193_1260358_+	molecular chaperone	NA	NA	NA	NA
WP_000755096.1\|1261623_1262097_+	fimbrial protein	NA	NA	NA	NA
WP_088895425.1\|1262349_1263577_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000440317.1\|1263630_1264560_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_000174339.1\|1264687_1266133_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_001253550.1\|1266288_1270089_-	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_000123197.1\|1270156_1271626_-	ribonuclease G	NA	NA	NA	NA
WP_000203098.1\|1271615_1272209_-	nucleoside triphosphate pyrophosphatase YhdE	NA	NA	NA	NA
WP_000179409.1\|1272217_1272706_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_000802512.1\|1272705_1273791_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000913396.1\|1273856_1274900_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_001416321.1\|1274856_1275060_+	hypothetical protein	NA	NA	NA	NA
WP_001241461.1\|1275204_1277145_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_001148462.1\|1277296_1278271_+	oxidoreductase	NA	NA	NA	NA
WP_000354622.1\|1279248_1279719_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_000884639.1\|1279729_1281079_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_000048612.1\|1282214_1283177_-	sugar kinase	NA	NA	NA	NA
WP_001570270.1\|1286212_1286419_-	hypothetical protein	NA	NA	NA	NA
WP_094096743.1\|1288188_1289356_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-182	99.0

DBSCAN-SWA_8

1792876 : 1853272

Stx2-converting_phage(27.78%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000140459.1\|1792876_1794073_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000285787.1\|1794264_1794834_-	4'-phosphopantetheinyl transferase AcpT	NA	NA	NA	NA
WP_000449758.1\|1794888_1795938_-	AI-2E family transporter	NA	NA	NA	NA
WP_001245295.1\|1797289_1797847_-	phage sensitivity protein DcrB	NA	NA	NA	NA
WP_001100469.1\|1797919_1798585_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	2.8e-57	53.1
WP_000130621.1\|1798805_1799051_+	sulfurtransferase TusA	A0A140XB86	Dickeya_phage	8.0e-10	83.3
WP_000106520.1\|1799152_1801351_-	Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA	E4ZFI9	Streptococcus_phage	7.2e-118	38.1
WP_000964718.1\|1801424_1802051_-	lysoplasmalogenase	A0A140XAH6	Dickeya_phage	1.2e-30	61.9
WP_000042893.1\|1802191_1802551_+	DUF2500 domain-containing protein	NA	NA	NA	NA
WP_001295207.1\|1802553_1802823_-	DUF1145 family protein	NA	NA	NA	NA
WP_000753479.1\|1802812_1803409_-	16S rRNA (guanine(966)-N(2))-methyltransferase	NA	NA	NA	NA
WP_001040634.1\|1803558_1805052_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_000617723.1\|1805054_1805723_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	6.1e-28	36.0
WP_001042006.1\|1805715_1806774_+	cell division protein FtsX	NA	NA	NA	NA
WP_000130217.1\|1807018_1807873_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	3.5e-44	41.9
WP_001022008.1\|1808143_1809247_+	branched chain amino acid ABC transporter substrate-binding protein LivJ	NA	NA	NA	NA
WP_000176384.1\|1809445_1809829_-	aspartate 1-decarboxylase autocleavage activator PanM	NA	NA	NA	NA
WP_000827696.1\|1810252_1811362_+	high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK	NA	NA	NA	NA
WP_001295111.1\|1811409_1812336_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA
WP_000803797.1\|1812332_1813610_+	branched chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_000082101.1\|1813606_1814374_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	W6JKT0	Anomala_cuprea_entomopoxvirus	4.9e-13	25.6
WP_000416883.1\|1814375_1815089_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF	G9BWD6	Planktothrix_phage	7.0e-14	31.1
WP_039059617.1\|1815485_1816802_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA
WP_000099285.1\|1816899_1817787_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA
WP_000572164.1\|1817783_1818629_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA
WP_000907808.1\|1818630_1819701_+	sn-glycerol 3-phosphate ABC transporter ATP binding protein UgpC	G9BWD6	Planktothrix_phage	2.2e-19	31.5
WP_000073588.1\|1819697_1820441_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	4.9e-10	25.0
WP_000825996.1\|1820427_1820868_-	DUF2756 family protein	NA	NA	NA	NA
WP_016243959.1\|1820987_1822721_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_000634159.1\|1822758_1823043_-	heat-shock protein	NA	NA	NA	NA
WP_133298150.1\|1823242_1823398_-	hypothetical protein	NA	NA	NA	NA
WP_000980638.1\|1824296_1824728_-	hypothetical protein	NA	NA	NA	NA
WP_000878026.1\|1825662_1826682_-\|transposase	IS110-like element ISEc11 family transposase	NA	NA	NA	NA
WP_000065895.1\|1826786_1827986_-	Hcp1 family type VI secretion system effector	NA	NA	NA	NA
WP_001295206.1\|1828222_1828711_-	N-acetyltransferase	NA	NA	NA	NA
WP_039059623.1\|1829042_1829969_+	oxidoreductase	NA	NA	NA	NA
WP_000639811.1\|1830091_1830787_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA
WP_000730260.1\|1831010_1832006_+	gluconate operon transcriptional repressor GntR	NA	NA	NA	NA
WP_000108320.1\|1832144_1832672_+	gluconokinase	NA	NA	NA	NA
WP_000210121.1\|1832675_1834016_+	gluconate transporter	NA	NA	NA	NA
WP_001002544.1\|1834072_1834666_-	NAAT family transporter YhgN	NA	NA	NA	NA
WP_000799970.1\|1834857_1835961_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_001283736.1\|1836233_1838420_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA
WP_000192517.1\|1838416_1840390_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_000253979.1\|1840407_1841703_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_039059625.1\|1841702_1843136_+	glycogen synthase GlgA	NA	NA	NA	NA
WP_000993449.1\|1843154_1845602_+	glycogen phosphorylase	A0A140XAG6	Dickeya_phage	2.1e-33	81.0
WP_134797178.1\|1846064_1846496_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	5.7e-35	75.3
WP_000099170.1\|1846506_1848045_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|1848093_1848441_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|1848437_1848818_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000623347.1\|1848929_1849280_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.4e-39	64.7
WP_134797179.1\|1849310_1850903_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.4e-171	61.0
WP_088895425.1\|1852044_1853272_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3

DBSCAN-SWA_9

2509603 : 2642336

100

Stx2-converting_phage(44.74%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088895425.1\|2509603_2510832_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000196875.1\|2512695_2514132_+	ammonia-forming nitrite reductase cytochrome c552 subunit	NA	NA	NA	NA
WP_001296647.1\|2514176_2514743_+	cytochrome c nitrite reductase pentaheme subunit	NA	NA	NA	NA
WP_000220281.1\|2514739_2515411_+	cytochrome c nitrite reductase Fe-S protein	NA	NA	NA	NA
WP_000195157.1\|2515407_2516364_+	cytochrome c nitrite reductase subunit NrfD	NA	NA	NA	NA
WP_071821661.1\|2516383_2518102_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_001032546.1\|2518094_2518478_+	heme lyase NrfEFG subunit NrfF	NA	NA	NA	NA
WP_000662608.1\|2518474_2519071_+	heme lyase NrfEFG subunit NrfG	NA	NA	NA	NA
WP_000789589.1\|2519412_2520726_+	glutamate/aspartate:proton symporter GltP	NA	NA	NA	NA
WP_000542751.1\|2522086_2522539_-	phosphonate C-P lyase system protein PhnG	NA	NA	NA	NA
WP_001301447.1\|2522539_2523265_-	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA
WP_001193493.1\|2523285_2524065_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_000992002.1\|2524190_2525207_-	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039059716.1\|2526151_2526595_-	VOC family metalloprotein YjdN	NA	NA	NA	NA
WP_001300891.1\|2526754_2527090_-	phnA family protein	NA	NA	NA	NA
WP_000093175.1\|2528820_2530158_-	arginine/agmatine antiporter	NA	NA	NA	NA
WP_001217059.1\|2530294_2531056_-	DNA-binding transcriptional activator AdiY	NA	NA	NA	NA
WP_077897104.1\|2531380_2533648_-	arginine decarboxylase	NA	NA	NA	NA
WP_001090754.1\|2533846_2534755_-	transcriptional regulator MelR	NA	NA	NA	NA
WP_039059718.1\|2535037_2536393_+	alpha-galactosidase	NA	NA	NA	NA
WP_134796819.1\|2536693_2537862_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	7.8e-180	98.7
WP_000272166.1\|2537949_2538156_+	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_000477615.1\|2539022_2539349_+	hypothetical protein	NA	NA	NA	NA
WP_000435418.1\|2540424_2540844_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.4e-35	76.3
WP_000624671.1\|2540840_2541191_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	65.5
WP_134795445.1\|2541221_2542814_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.1e-171	60.8
WP_144039317.1\|2543100_2543322_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	2.1e-33	97.1
WP_134796773.1\|2543264_2543480_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBP6	Stx2-converting_phage	2.0e-25	88.2
WP_039058912.1\|2543476_2543824_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.2e-61	99.1
WP_134796820.1\|2543872_2545411_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.2e-294	99.0
WP_134795405.1\|2545326_2545638_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.8e-30	100.0
WP_001333468.1\|2545634_2546015_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000624671.1\|2546392_2546743_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	65.5
WP_000435428.1\|2546739_2547159_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.2e-35	76.3
WP_001387241.1\|2547555_2549751_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_001287501.1\|2552830_2553778_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_012421559.1\|2553778_2555503_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000074489.1\|2555638_2556832_+	MFS transporter	NA	NA	NA	NA
WP_071600834.1\|2556781_2556979_-	hypothetical protein	NA	NA	NA	NA
WP_134796820.1\|2557610_2559149_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.2e-294	99.0
WP_039058912.1\|2559197_2559545_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.2e-61	99.1
WP_094096764.1\|2559689_2560858_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.3e-179	98.4
WP_001034105.1\|2567429_2571287_+\|protease	serine protease autotransporter toxin SigA	Q9LA58	Enterobacterial_phage	6.3e-226	38.3
WP_144039321.1\|2571333_2571897_+	hypothetical protein	NA	NA	NA	NA
WP_000099170.1\|2571907_2573446_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|2573494_2573842_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|2573838_2574219_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_094193507.1\|2577633_2578831_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_001223356.1\|2579973_2582064_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_088895425.1\|2582519_2583747_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_134795447.1\|2584470_2585627_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.4e-66	44.4
WP_001333468.1\|2585992_2586373_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612626.1\|2586369_2586717_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000099174.1\|2586765_2588304_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-294	99.0
WP_001188520.1\|2590653_2591229_-	transcriptional regulator	NA	NA	NA	NA
WP_000068976.1\|2591265_2592963_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_000883400.1\|2592938_2593277_-	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_000961959.1\|2593392_2594694_-	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA
WP_000015872.1\|2597074_2598331_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_001026276.1\|2598606_2598900_+	co-chaperone GroES	K4F9I2	Cronobacter_phage	9.2e-13	45.4
WP_000729117.1\|2598943_2600590_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.3e-190	68.9
WP_000558209.1\|2600727_2601081_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_001008051.1\|2601283_2602153_-	hypothetical protein	NA	NA	NA	NA
WP_000940527.1\|2602526_2603576_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_000257278.1\|2603617_2604184_+	elongation factor P	NA	NA	NA	NA
WP_000977757.1\|2604235_2604361_+	lipoprotein antitoxin entericidin A	NA	NA	NA	NA
WP_000239596.1\|2604471_2604618_+	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000118482.1\|2604799_2605117_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_001238381.1\|2605113_2605647_-	lipocalin Blc	A0A1W6JNX6	Morganella_phage	1.4e-46	54.4
WP_012421501.1\|2605735_2606869_-	BlaEC family class C beta-lactamase	NA	NA	NA	NA
WP_012421212.1\|2606931_2607291_-	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_000208757.1\|2607301_2607697_-	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_000829498.1\|2607707_2608442_-	fumarate reductase iron-sulfur protein	NA	NA	NA	NA
WP_001192983.1\|2608434_2610243_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000004771.1\|2610567_2611545_+	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	6.8e-28	28.2
WP_001236784.1\|2613145_2616469_-	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_000934920.1\|2616490_2617459_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_000041970.1\|2617555_2618608_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_001295188.1\|2618702_2619248_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-28	40.4
WP_010723271.1\|2619986_2620040_+	hypothetical protein	NA	NA	NA	NA
WP_001294219.1\|2620022_2621162_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_012421570.1\|2621160_2622708_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_000981977.1\|2622679_2623141_+\|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	NA	NA	NA	NA
WP_000990330.1\|2623159_2624497_+	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	8.8e-18	31.0
WP_001122503.1\|2624506_2626354_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.4e-60	41.3
WP_001280361.1\|2626346_2627297_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001051888.1\|2627382_2627691_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000460348.1\|2627767_2629048_+	GTPase HflX	NA	NA	NA	NA
WP_000312488.1\|2629133_2630393_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_001232412.1\|2630395_2631400_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_001089295.1\|2631481_2631679_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_000527955.1\|2631782_2633081_+	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001177606.1\|2633285_2633711_+	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000076296.1\|2633749_2636191_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.7e-67	33.1
WP_001293290.1\|2636371_2637103_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000547762.1\|2638127_2638526_+	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000101670.1\|2638535_2639174_+	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000943997.1\|2639176_2640235_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	5.2e-66	39.5
WP_000558725.1\|2640318_2641944_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000811566.1\|2642060_2642336_-\|protease	protease activator YjfN	NA	NA	NA	NA

DBSCAN-SWA_10

3050968 : 3111069

Shigella_phage(22.73%)

tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000176568.1\|3050968_3052267_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|3052315_3052576_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|3052562_3052763_-	YaeP family protein	NA	NA	NA	NA
WP_039058969.1\|3052928_3053474_+	YaeQ family protein	NA	NA	NA	NA
WP_000635545.1\|3053470_3053893_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239180.1\|3053906_3054617_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_012421638.1\|3054816_3055641_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_001260712.1\|3055693_3057412_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094014.1\|3057522_3058230_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|3058226_3058631_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|3058748_3059564_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294604.1\|3059603_3060257_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|3060249_3061281_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140196.1\|3061468_3062041_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997060.1\|3067801_3068605_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	1.9e-39	36.6
WP_000648553.1\|3068601_3069516_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|3069756_3070557_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000644682.1\|3071232_3072591_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052720.1\|3072662_3073418_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001297210.1\|3073451_3074174_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|3074170_3074638_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001297205.1\|3074702_3075434_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_001118027.1\|3076653_3077424_-	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000532698.1\|3077577_3078051_+	C-lysozyme inhibitor	NA	NA	NA	NA
WP_000973080.1\|3078093_3080538_-	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA
WP_000284050.1\|3080777_3081356_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000333380.1\|3081561_3082329_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_039058971.1\|3082299_3083040_-	murein L,D-transpeptidase	NA	NA	NA	NA
WP_012421460.1\|3084116_3084866_+	C40 family peptidase	A0A0A8WIF2	Clostridium_phage	1.9e-14	36.1
WP_114142541.1\|3086180_3086936_+	hypothetical protein	NA	NA	NA	NA
WP_000564146.1\|3087099_3087870_+	hypothetical protein	A0A0F6TIY9	Escherichia_coli_O157_typing_phage	1.6e-80	69.8
WP_000691315.1\|3087928_3088981_+	DNA polymerase IV	NA	NA	NA	NA
WP_001059855.1\|3088977_3089430_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000528873.1\|3089675_3090242_+	RNA ligase RtcB family protein	U5PUG1	Bacillus_phage	7.8e-08	30.3
WP_039059955.1\|3090220_3091417_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000602112.1\|3092237_3092852_+	peptide chain release factor H	NA	NA	NA	NA
WP_001293009.1\|3092908_3094366_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291986.1\|3094626_3095085_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189552.1\|3095176_3096421_+	esterase FrsA	NA	NA	NA	NA
WP_000174677.1\|3096478_3096880_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_039058982.1\|3096918_3097974_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	6.5e-117	60.3
WP_001285288.1\|3098261_3099365_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893275.1\|3099376_3100630_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.2e-95	47.2
WP_094096479.1\|3101349_3102506_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.7
WP_071821522.1\|3102799_3102979_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000515838.1\|3103154_3103712_-	protein YmfL	U5P4K1	Shigella_phage	1.5e-96	95.1
WP_000649481.1\|3103755_3103956_-	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	1.1e-30	98.5
WP_039080454.1\|3104046_3104721_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.3e-131	98.7
WP_094096742.1\|3106089_3107311_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000016353.1\|3107296_3107605_+\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	3.7e-36	89.9
WP_094096743.1\|3107856_3109025_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-182	99.0
WP_071821681.1\|3109086_3109446_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.4e-39	65.2
WP_001072381.1\|3109476_3111069_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-171	61.0

DBSCAN-SWA_11

3510872 : 3528833

Stx2-converting_phage(37.5%)

tail,transposase,integrase

attL 3509451:3509466|attR 3529781:3529796

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3509451:3509466	attL	NA	NA	NA	NA
WP_000891683.1\|3510872_3511931_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	2.6e-20	35.7
WP_012421454.1\|3511931_3512750_-	bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase	NA	NA	NA	NA
WP_073692072.1\|3512985_3513429_-\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	3.8e-34	48.7
WP_094096743.1\|3513601_3514770_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-182	99.0
WP_000702027.1\|3515014_3515437_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.8e-70	95.7
WP_000787424.1\|3515724_3516132_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.7e-28	49.6
WP_000379550.1\|3516334_3516487_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.5e-08	57.4
WP_000935605.1\|3516908_3517748_+	Rha family phage regulatory protein	A5LH69	Enterobacteria_phage	3.2e-42	48.2
WP_167549338.1\|3520615_3521843_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	5.0e-177	99.0
WP_000099170.1\|3522828_3524367_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|3524415_3524763_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_024259670.1\|3524759_3525140_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.7e-65	98.4
WP_077897081.1\|3525248_3525770_+\|tail	phage tail protein	Q7Y4D4	Escherichia_virus	3.6e-44	56.0
WP_039059100.1\|3525772_3526318_+\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	4.6e-74	74.2
WP_001333468.1\|3526521_3526902_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612626.1\|3526898_3527246_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000099170.1\|3527294_3528833_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
3529781:3529796	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3625719 : 3665392

Enterobacteria_phage(54.55%)

tRNA,tail,transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039059141.1\|3625719_3626415_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_001295452.1\|3626411_3626810_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_000691708.1\|3628402_3628486_-	protein YohP	NA	NA	NA	NA
WP_001078128.1\|3628709_3630146_+	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_000079520.1\|3630198_3630960_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012421544.1\|3631836_3632412_+	YIP1 family protein	NA	NA	NA	NA
WP_024258568.1\|3632585_3633518_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_000097369.1\|3633555_3635271_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_000871503.1\|3635466_3637764_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_000221788.1\|3638938_3640096_+	glycine betaine ABC transporter permease YehY	NA	NA	NA	NA
WP_000569318.1\|3640088_3641015_+	glycine betaine ABC transporter ATP binding protein YehX	G9BWD6	Planktothrix_phage	7.4e-24	34.6
WP_000783120.1\|3641019_3641751_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|3641731_3641839_-	protein YohO	NA	NA	NA	NA
WP_000435414.1\|3641987_3642407_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.9e-36	77.3
WP_000623347.1\|3642403_3642754_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.4e-39	64.7
WP_001072381.1\|3642784_3644377_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-171	61.0
WP_001063816.1\|3645237_3646365_-\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA
WP_133298166.1\|3646466_3647075_+	nickel/cobalt efflux transporter RcnA	NA	NA	NA	NA
WP_000153067.1\|3647293_3647632_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000682832.1\|3649111_3649654_-	fimbrial protein	NA	NA	NA	NA
WP_001403727.1\|3649952_3650234_-	DUF2574 family protein	NA	NA	NA	NA
WP_001005448.1\|3650496_3651606_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_032229995.1\|3651737_3653771_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_088895425.1\|3654970_3656198_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_001295430.1\|3658163_3658634_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598643.1\|3658680_3659400_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_012421574.1\|3659396_3661082_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.8e-303	99.3
WP_001261938.1\|3662373_3662622_+	DinI-like family protein	B6DZC1	Enterobacteria_phage	7.0e-38	98.8
WP_001026780.1\|3662938_3663484_+	serine acetyltransferase	NA	NA	NA	NA
WP_039059150.1\|3663494_3664067_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.4e-88	83.5
WP_073692955.1\|3664066_3665392_-\|tail	tail fiber protein	X2KTY7	Enterobacteria_phage	9.8e-86	61.0

DBSCAN-SWA_13

3672647 : 3719759

Enterobacteria_phage(34.21%)

terminase,tail,lysis,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094096751.1\|3672647_3673319_-\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	2.4e-104	95.9
WP_024260951.1\|3673888_3674587_-\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	7.8e-127	95.3
WP_000847315.1\|3674586_3674916_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	8.9e-57	96.3
WP_000533443.1\|3677504_3677918_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	4.1e-43	83.2
WP_039059160.1\|3678349_3679102_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	8.7e-132	97.6
WP_000683079.1\|3679109_3679505_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000975010.1\|3679501_3680077_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	6.4e-50	57.8
WP_001204570.1\|3680092_3680446_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.5e-41	69.2
WP_000201502.1\|3680438_3680822_-	hypothetical protein	NA	NA	NA	NA
WP_000256820.1\|3681958_3682306_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	8.9e-23	58.1
WP_073692874.1\|3682342_3683848_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.3e-99	53.1
WP_000140265.1\|3685413_3685695_-	hypothetical protein	NA	NA	NA	NA
WP_094096479.1\|3685819_3686976_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.7
WP_001289722.1\|3687131_3687401_+	DUF826 domain-containing protein	A0A2R2Z348	Escherichia_phage	8.2e-08	74.2
WP_000435414.1\|3687604_3688024_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.9e-36	77.3
WP_000623347.1\|3688020_3688371_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.4e-39	64.7
WP_001072381.1\|3688401_3689994_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-171	61.0
WP_039059163.1\|3690041_3690185_+\|lysis	lysis protein	Q9ZWW2	Enterobacteria_phage	4.0e-14	88.1
WP_001007759.1\|3692042_3692693_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001240105.1\|3692949_3693585_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_000740100.1\|3693585_3694590_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_000920122.1\|3694698_3695112_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_134797182.1\|3695244_3695916_+	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
WP_000826763.1\|3695915_3697274_+	two-component system sensor histidine kinase HprS	Q8QKV7	Ectocarpus_siliculosus_virus	8.7e-05	20.5
WP_000218214.1\|3697381_3698233_-	protein deglycase HchA	NA	NA	NA	NA
WP_153449117.1\|3698379_3698748_+	hypothetical protein	NA	NA	NA	NA
WP_000020956.1\|3699601_3700099_-	porin	Q1MVN1	Enterobacteria_phage	4.1e-37	47.0
WP_167549338.1\|3700192_3701420_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	5.0e-177	99.0
WP_073692924.1\|3702577_3702943_+	permease	NA	NA	NA	NA
WP_000365568.1\|3702982_3703678_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	7.3e-08	28.0
WP_001157236.1\|3703744_3705163_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.8e-101	55.3
WP_000786008.1\|3705143_3705614_+	VSPR family DNA mismatch endonuclease	E5E3X5	Burkholderia_phage	4.4e-33	47.6
WP_005113720.1\|3707397_3707754_-	hypothetical protein	A0A0P0ZDV1	Stx2-converting_phage	1.8e-55	100.0
WP_039059167.1\|3707819_3708164_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.6e-56	98.2
WP_000569978.1\|3708160_3708607_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	9.9e-75	98.0
WP_001007905.1\|3708603_3708954_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125994.1\|3708963_3709290_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	1.0e-52	99.1
WP_001063101.1\|3711552_3711774_-	hypothetical protein	B6DZA0	Enterobacteria_phage	3.8e-35	98.6
WP_073714345.1\|3713818_3715480_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.6
WP_001530008.1\|3715476_3716040_-\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	4.0e-73	84.9
WP_039059168.1\|3716330_3716696_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.8e-58	92.6
WP_000095744.1\|3716737_3716938_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000828072.1\|3717069_3717396_-	TonB family protein	H6WZK5	Escherichia_phage	3.4e-56	98.1
WP_001082565.1\|3717734_3718202_-\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	1.1e-73	95.5
WP_000675931.1\|3718203_3718317_-	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_039080477.1\|3718537_3719071_-	lysozyme	Q6H9V6	Enterobacteria_phage	5.1e-94	91.5
WP_000369850.1\|3719176_3719449_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|3719414_3719759_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2

DBSCAN-SWA_14

3744148 : 3785197

Stx2-converting_phage(27.27%)

tail,transposase,integrase

attL 3737098:3737157|attR 3763995:3764757

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3737098:3737157	attL	NA	NA	NA	NA
WP_039059174.1\|3744148_3745411_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.5e-72	41.0
WP_000532912.1\|3747925_3748642_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_039059176.1\|3748984_3750418_-	AMP nucleosidase	NA	NA	NA	NA
WP_167710671.1\|3750424_3751653_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	3.8e-177	99.0
WP_164997312.1\|3752852_3754066_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	8.7e-166	97.6
WP_001302302.1\|3761827_3762625_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_114142313.1\|3762835_3763291_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	7.3e-41	62.9
WP_134796775.1\|3764359_3765515_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.8e-66	44.4
3763995:3764757	attR	NA	NA	NA	NA
WP_134796840.1\|3765898_3767437_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.3e-294	99.2
WP_000612626.1\|3767485_3767833_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|3767829_3768210_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_001063816.1\|3768564_3769692_-\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA
WP_000929754.1\|3770285_3770564_-	hypothetical protein	I6PCV7	Cronobacter_phage	2.4e-10	43.8
WP_000935258.1\|3770731_3770944_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	6.6e-29	95.7
WP_071821547.1\|3771538_3771892_-	hypothetical protein	A0A076GCN9	Escherichia_phage	2.8e-24	70.7
WP_001333468.1\|3772024_3772405_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612626.1\|3772401_3772749_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_134802545.1\|3772797_3774336_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.3e-294	99.0
WP_073692993.1\|3774332_3774692_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.1e-31	61.8
WP_000096344.1\|3774750_3774954_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_094096479.1\|3775353_3776510_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.7
WP_000377820.1\|3776749_3777340_+	DUF2313 domain-containing protein	Q8W614	Enterobacteria_phage	4.9e-114	98.5
WP_165850228.1\|3778014_3778536_+	hypothetical protein	Q7Y4D4	Escherichia_virus	8.1e-44	54.9
WP_000902895.1\|3778538_3779084_+\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	9.3e-75	75.3
WP_000930154.1\|3780112_3780736_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	2.1e-78	75.9
WP_001039895.1\|3780735_3780915_+	hypothetical protein	NA	NA	NA	NA
WP_134797187.1\|3780915_3782559_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_000239869.1\|3782874_3783543_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937487.1\|3783599_3783869_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.6e-19	81.7
WP_094096743.1\|3784028_3785197_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-182	99.0

DBSCAN-SWA_15

3815189 : 3862484

Stx2-converting_phage(30.43%)

tRNA,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000826462.1\|3815189_3816398_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	2.2e-209	93.8
WP_001282098.1\|3817952_3818366_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_004982751.1\|3818368_3818734_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253450.1\|3818733_3819471_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187365.1\|3819480_3819750_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000983993.1\|3819758_3820544_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103990.1\|3820833_3821445_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_000867217.1\|3822286_3822475_-	protein DsrB	NA	NA	NA	NA
WP_000844800.1\|3822637_3822865_+	peroxide/acid resistance protein YodD	NA	NA	NA	NA
WP_000491512.1\|3823162_3823978_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_077897108.1\|3823974_3825669_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	8.5e-18	35.1
WP_000009307.1\|3825839_3826022_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_000922682.1\|3826100_3827018_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_114142276.1\|3827814_3828228_+	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	1.5e-64	99.2
WP_000710952.1\|3828242_3828617_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
WP_128566924.1\|3828712_3828922_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	4.4e-33	97.1
WP_000224021.1\|3828969_3829230_+	hypothetical protein	NA	NA	NA	NA
WP_077897106.1\|3829364_3830966_-\|transposase	IS66-like element ISEc49 family transposase	A0A218MNE7	uncultured_virus	2.6e-77	36.4
WP_000950647.1\|3830972_3831365_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_000042910.1\|3831351_3831681_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_000807924.1\|3834779_3835121_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	2.4e-60	96.5
WP_004983175.1\|3835120_3835819_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	9.2e-128	95.7
WP_000194705.1\|3835829_3836573_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.5e-147	97.6
WP_012602254.1\|3836470_3837151_+\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	2.4e-112	99.1
WP_039060121.1\|3837391_3840865_+	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	96.9
WP_000216459.1\|3841586_3842822_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZGT8	Escherichia_phage	1.7e-68	98.5
WP_000539253.1\|3842907_3843420_+	receptor recognizing protein Gp38	A0A0P0ZFL3	Escherichia_phage	1.1e-85	92.9
WP_001114260.1\|3843495_3843708_+	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	7.1e-15	63.6
WP_001217553.1\|3844309_3844558_-	DinI-like family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
WP_000530012.1\|3844654_3844831_+	hypothetical protein	NA	NA	NA	NA
WP_000140459.1\|3846062_3847259_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000891627.1\|3847449_3847704_-	isochorismatase family protein	NA	NA	NA	NA
WP_001258662.1\|3848013_3849786_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_001300367.1\|3849903_3850356_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907247.1\|3850384_3851125_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001295503.1\|3851159_3851681_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000435414.1\|3852025_3852445_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.9e-36	77.3
WP_000623347.1\|3852441_3852792_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.4e-39	64.7
WP_001072381.1\|3852822_3854415_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-171	61.0
WP_001063816.1\|3854707_3855835_-\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA
WP_088895425.1\|3856276_3857505_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_039059216.1\|3857578_3858409_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	3.6e-46	38.5
WP_000860059.1\|3858490_3858970_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	8.9e-13	33.8
WP_012421636.1\|3858985_3859462_+	RadC family protein	NA	NA	NA	NA
WP_000692323.1\|3859524_3859746_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_001285585.1\|3859819_3860188_+	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000854814.1\|3860276_3860651_+	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000988600.1\|3860647_3860842_+	hypothetical protein	NA	NA	NA	NA
WP_001161660.1\|3860854_3860968_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001063816.1\|3861356_3862484_+\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

3931814 : 3939353

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053895055.1\|3931814_3933209_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-18	32.6
WP_000999466.1\|3933366_3934362_+	SDR family oxidoreductase	A0A1V0QG29	Shearwaterpox_virus	1.9e-09	26.3
WP_000183070.1\|3934604_3935498_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.1e-45	41.7
WP_000699430.1\|3935870_3936956_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-100	53.9
WP_073714274.1\|3936955_3937855_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.4e-29	35.2
WP_073714275.1\|3937912_3938791_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.1
WP_032218868.1\|3938795_3939353_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	59.1

DBSCAN-SWA_17

3969737 : 4003317

Enterobacteria_phage(56.25%)

holin,transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000399687.1\|3969737_3970718_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000450409.1\|3971502_3971832_+	DUF496 family protein	NA	NA	NA	NA
WP_001016348.1\|3971932_3972115_-	hypothetical protein	NA	NA	NA	NA
WP_001063816.1\|3972607_3973735_-\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA
WP_012421238.1\|3973950_3974151_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.5e-27	92.4
WP_000828072.1\|3974282_3974609_-	TonB family protein	H6WZK5	Escherichia_phage	3.4e-56	98.1
WP_000735655.1\|3974953_3975178_-	hypothetical protein	NA	NA	NA	NA
WP_032207510.1\|3975201_3975669_-\|lysis	lysis protein	Q6H9V3	Enterobacteria_phage	1.3e-69	88.4
WP_001151821.1\|3975817_3976000_-	hypothetical protein	NA	NA	NA	NA
WP_001092881.1\|3976156_3976690_-	lysozyme	Q6H9V6	Enterobacteria_phage	1.6e-100	96.6
WP_000731267.1\|3976740_3977085_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	7.2e-57	97.4
WP_000284510.1\|3977089_3977305_-\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_165850575.1\|3977381_3977711_-	DUF826 domain-containing protein	A0A0N7C077	Escherichia_phage	4.5e-16	74.8
WP_000142783.1\|3977634_3977817_-	DUF1378 family protein	S5MBZ5	Escherichia_phage	1.6e-23	91.7
WP_000874275.1\|3977955_3979821_-	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	2.2e-264	71.5
WP_000871291.1\|3980081_3980417_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_000935526.1\|3981006_3982056_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	9.4e-201	96.8
WP_000762934.1\|3982630_3983452_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.1e-79	60.1
WP_000904114.1\|3983448_3983823_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.1e-34	62.7
WP_001065349.1\|3984876_3985134_-	hypothetical protein	Q8W639	Enterobacteria_phage	7.3e-22	70.1
WP_024258584.1\|3986528_3987407_-	ATP-binding protein	Q8W641	Enterobacteria_phage	3.9e-139	94.8
WP_000092418.1\|3987417_3988398_-	hypothetical protein	Q8W642	Enterobacteria_phage	3.1e-60	96.6
WP_000995578.1\|3988394_3988694_-	hypothetical protein	NA	NA	NA	NA
WP_000618007.1\|3988690_3988915_-	hypothetical protein	NA	NA	NA	NA
WP_000626793.1\|3988911_3989106_-	hypothetical protein	NA	NA	NA	NA
WP_000587264.1\|3989102_3989951_-	Rha family phage regulatory protein	A5LH69	Enterobacteria_phage	3.8e-91	65.4
WP_001090260.1\|3990059_3990767_-	Rha family transcriptional regulator	Q8W645	Enterobacteria_phage	5.0e-105	85.1
WP_000838344.1\|3991102_3991759_+	helix-turn-helix domain-containing protein	Q8W648	Enterobacteria_phage	3.1e-125	97.7
WP_000608404.1\|3991861_3992365_+	helix-turn-helix domain-containing protein	Q8W649	Enterobacteria_phage	1.8e-64	96.2
WP_000141093.1\|3992652_3992859_+	hypothetical protein	Q8W651	Enterobacteria_phage	1.3e-29	94.1
WP_167551163.1\|3992986_3994215_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	99.0
WP_039064784.1\|3994389_3994590_+	hypothetical protein	A0A1B5FPB7	Escherichia_phage	2.7e-08	55.3
WP_001199104.1\|3994595_3995177_+	hypothetical protein	Q8W653	Enterobacteria_phage	1.9e-70	65.1
WP_000179800.1\|3995425_3995743_+	DUF4752 family protein	A0A1I9LJV1	Stx_converting_phage	5.2e-38	82.6
WP_001300189.1\|3995696_3996011_+	hypothetical protein	B1GS43	Salmonella_phage	2.8e-39	86.0
WP_039059243.1\|3995997_3996678_+	ead/Ea22-like family protein	A5VWB1	Enterobacteria_phage	7.3e-37	67.4
WP_039059242.1\|3996674_3997211_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	3.6e-63	69.3
WP_039080509.1\|3997212_3997515_+	hypothetical protein	G9L6B3	Escherichia_phage	1.6e-52	96.0
WP_000628767.1\|3998884_3999829_+	hypothetical protein	A0A0H4IU61	Shigella_phage	2.6e-80	58.6
WP_000457723.1\|3999913_4000156_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.3e-32	87.5
WP_048815028.1\|4001504_4002083_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	5.5e-102	98.9
WP_001063816.1\|4002189_4003317_+\|transposase	IS110-like element ISSso6 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

4193096 : 4231824

Shigella_phage(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094096507.1\|4193096_4194264_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_012421392.1\|4195664_4196585_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_088895425.1\|4196765_4197993_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000817680.1\|4198058_4198958_+	DNA-binding transcriptional regulator PgrR	NA	NA	NA	NA
WP_000559900.1\|4200957_4201989_-	low conductance mechanosensitive channel YnaI	NA	NA	NA	NA
WP_000605090.1\|4203009_4203267_+	DUF2534 family protein	NA	NA	NA	NA
WP_001262112.1\|4203328_4204267_-	universal stress protein UspE	NA	NA	NA	NA
WP_000611911.1\|4204418_4205171_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_000945013.1\|4205365_4205881_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.8e-24	42.8
WP_001156463.1\|4208231_4209677_-	p-aminobenzoyl-glutamate hydrolase subunit AbgB	NA	NA	NA	NA
WP_000885456.1\|4211005_4211914_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001046827.1\|4212243_4212807_+	DNA endonuclease SmrA	NA	NA	NA	NA
WP_039060229.1\|4212827_4214060_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|4214314_4215298_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123780.1\|4215775_4217149_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.9e-52	32.9
WP_001157416.1\|4217277_4218213_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.0e-145	98.4
WP_167549342.1\|4219559_4220772_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.1e-165	97.6
WP_012421537.1\|4221881_4222547_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000882657.1\|4222717_4222930_+	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	4.0e-26	90.0
WP_000687440.1\|4223179_4223467_+	hypothetical protein	NA	NA	NA	NA
WP_001134632.1\|4223486_4224104_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.0e-102	89.3
WP_134802550.1\|4224362_4225518_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.4e-66	44.7
WP_000640137.1\|4225574_4226129_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.3e-68	69.7
WP_094096507.1\|4226687_4227855_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_000612626.1\|4229155_4229503_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|4229499_4229880_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_136952279.1\|4230610_4231824_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.2e-169	100.0

DBSCAN-SWA_19

4261071 : 4298370

Stx2-converting_phage(55.56%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094096507.1\|4261071_4262239_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_000048696.1\|4262214_4262328_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000428998.1\|4262516_4263047_+	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000731833.1\|4263291_4263465_+	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_001320773.1\|4263536_4263686_-	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000099170.1\|4265583_4267122_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|4267170_4267518_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|4267514_4267895_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_012421383.1\|4267994_4268165_+	hypothetical protein	NA	NA	NA	NA
WP_012421364.1\|4268202_4269126_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000013782.1\|4269342_4270686_+	VOC family protein	NA	NA	NA	NA
WP_000375947.1\|4270910_4272566_+	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_004983724.1\|4272705_4272930_+	YdcH family protein	NA	NA	NA	NA
WP_000140884.1\|4272992_4273529_+	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_000099170.1\|4273836_4275375_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|4275423_4275771_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|4275767_4276148_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_012421383.1\|4276247_4276418_+	hypothetical protein	NA	NA	NA	NA
WP_012421364.1\|4276455_4277379_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000013782.1\|4277595_4278939_+	VOC family protein	NA	NA	NA	NA
WP_000375947.1\|4279163_4280819_+	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_004983724.1\|4280958_4281183_+	YdcH family protein	NA	NA	NA	NA
WP_000140884.1\|4281245_4281782_+	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_000099170.1\|4282089_4283628_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|4283676_4284024_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333468.1\|4284020_4284401_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_012421650.1\|4285329_4286322_+	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_000586729.1\|4286318_4286912_+	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_094096479.1\|4287953_4289110_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.7
WP_000435414.1\|4290430_4290850_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.9e-36	77.3
WP_001072397.1\|4291227_4292820_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.4e-171	61.0
WP_077897637.1\|4293246_4294389_+	carbohydrate porin	NA	NA	NA	NA
WP_134796780.1\|4294511_4295679_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.4e-181	98.7
WP_039080538.1\|4295719_4297114_+	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	2.8e-27	26.4
WP_088895425.1\|4297141_4298370_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3

DBSCAN-SWA_20

4309554 : 4387475

Shigella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094193507.1\|4309554_4310753_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_024258603.1\|4311953_4312868_+	hypothetical protein	NA	NA	NA	NA
WP_024258604.1\|4312871_4313630_-	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_012421233.1\|4313692_4315321_+\|transposase	IS4 family transposase	A0A0U2QQK4	Escherichia_phage	8.1e-74	76.4
WP_134797170.1\|4315499_4317251_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_094096507.1\|4317789_4318958_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3
WP_000579667.1\|4319616_4319742_+	hypothetical protein	NA	NA	NA	NA
WP_000214712.1\|4321326_4321530_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000215546.1\|4321707_4322394_-	DNA-binding transcriptional regulator YdfH	NA	NA	NA	NA
WP_000636571.1\|4322482_4323229_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_000210375.1\|4323365_4325411_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_001024556.1\|4325455_4325974_-	2-oxo-tetronate isomerase	NA	NA	NA	NA
WP_000671731.1\|4326249_4326642_+	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_134795371.1\|4330854_4332011_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.7e-65	44.4
WP_001303494.1\|4332326_4332422_-	stress response membrane protein YncL	NA	NA	NA	NA
WP_000718913.1\|4332656_4332791_+	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_000018633.1\|4332876_4333110_+	YdcY family protein	NA	NA	NA	NA
WP_001076536.1\|4333110_4333560_-	DMT family transporter	NA	NA	NA	NA
WP_001353827.1\|4333556_4334075_-	L-methionine sulfoximine/L-methionine sulfone acetyltransferase	NA	NA	NA	NA
WP_012421279.1\|4334255_4335293_+	NADPH-dependent curcumin/dihydrocurcumin reductase	NA	NA	NA	NA
WP_000689373.1\|4336542_4338645_-	TonB-dependent receptor	A0A1B0VCF0	Salmonella_phage	4.0e-134	65.3
WP_000550675.1\|4338886_4339948_+	YncE family protein	NA	NA	NA	NA
WP_001300590.1\|4340060_4341560_-	L-asparagine permease	NA	NA	NA	NA
WP_012421433.1\|4341826_4342324_+	glutathione S-transferase	NA	NA	NA	NA
WP_005006008.1\|4343476_4343656_-	hypothetical protein	NA	NA	NA	NA
WP_000977355.1\|4343660_4343864_+	RHS domain-containing protein	NA	NA	NA	NA
WP_167549350.1\|4343911_4345140_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	99.0
WP_077897594.1\|4347107_4350155_+	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_001240578.1\|4350167_4351052_+	formate dehydrogenase N subunit beta	NA	NA	NA	NA
WP_000045648.1\|4351044_4351698_+	formate dehydrogenase-N subunit gamma	NA	NA	NA	NA
WP_000781370.1\|4351748_4352033_-	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	1.2e-20	51.1
WP_000433446.1\|4353314_4355012_-	malate dehydrogenase	NA	NA	NA	NA
WP_000841554.1\|4355168_4355306_-	stationary-phase-induced ribosome-associated protein	NA	NA	NA	NA
WP_000495766.1\|4355407_4355623_-	biofilm-dependent modulation protein	NA	NA	NA	NA
WP_000152298.1\|4355968_4356400_+	peroxiredoxin OsmC	NA	NA	NA	NA
WP_001285566.1\|4356455_4357382_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.3e-14	29.6
WP_000193531.1\|4357374_4358361_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-17	31.7
WP_000887673.1\|4361363_4361945_-	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA
WP_024258606.1\|4362202_4364602_-	oxygen-sensing cyclic-di-GMP phosphodiesterase	A0A1V0SL97	Klosneuvirus	1.2e-09	22.0
WP_000350400.1\|4366379_4367699_-	glycoside hydrolase family 10 protein	NA	NA	NA	NA
WP_000246019.1\|4367829_4369365_-	acid resistance gamma-aminobutyrate antiporter GadC	NA	NA	NA	NA
WP_000358931.1\|4369519_4370920_-	glutamate decarboxylase	NA	NA	NA	NA
WP_012421276.1\|4371281_4374065_-	insulinase family protein	A0A167R9K4	Powai_lake_megavirus	1.1e-19	24.2
WP_000832424.1\|4374121_4376494_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_000628530.1\|4376531_4378217_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	2.9e-10	23.8
WP_120795387.1\|4378419_4378542_+	protein YneP	NA	NA	NA	NA
WP_000060493.1\|4379156_4379918_-	acid stress response transcriptional regulator YdeO	NA	NA	NA	NA
WP_000543389.1\|4379992_4380190_-	two-component system connector SafA	NA	NA	NA	NA
WP_000726687.1\|4380437_4382717_-	acid resistance putative oxidoreductase YdeP	NA	NA	NA	NA
WP_039080541.1\|4383585_4384116_-	HipA domain-containing protein	NA	NA	NA	NA
WP_088895425.1\|4384618_4385846_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_094096507.1\|4386307_4387475_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.3

DBSCAN-SWA_21

4484453 : 4560979

Enterobacteria_phage(50.0%)

tail,terminase,plate,integrase,transposase

attL 4491884:4491943|attR 4550900:4551667

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000099170.1\|4484453_4485992_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-295	99.4
WP_000612626.1\|4486040_4486388_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_073714280.1\|4486384_4486765_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.1e-65	98.4
WP_000587600.1\|4487142_4487955_-	hypothetical protein	NA	NA	NA	NA
WP_001069986.1\|4487958_4488744_-	thiosulfate reductase cytochrome B subunit	NA	NA	NA	NA
WP_048815031.1\|4488740_4489409_-	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	4.5e-23	37.8
WP_001549248.1\|4489472_4490111_-	YdhW family putative oxidoreductase system protein	NA	NA	NA	NA
4491884:4491943	attL	NA	NA	NA	NA
WP_000528340.1\|4492683_4492893_-	fumarate hydratase FumD	NA	NA	NA	NA
WP_001295403.1\|4493449_4494862_+	pyruvate kinase PykF	NA	NA	NA	NA
WP_000648420.1\|4495172_4495409_+	murein lipoprotein Lpp	NA	NA	NA	NA
WP_001196526.1\|4496624_4497041_-	cysteine desulfuration protein SufE	NA	NA	NA	NA
WP_000144558.1\|4497053_4498274_-	cysteine desulfurase SufS	Q2XUY6	environmental_halophage	6.4e-92	41.2
WP_000907994.1\|4498270_4499542_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_000948855.1\|4499516_4500263_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	3.8e-10	32.0
WP_000367175.1\|4501768_4502137_-	Fe-S cluster assembly scaffold SufA	A0A2H4N7N5	Lake_Baikal_phage	4.3e-15	39.4
WP_001296104.1\|4502683_4502872_-	hypothetical protein	NA	NA	NA	NA
WP_000637981.1\|4502971_4503382_-	1,4-dihydroxy-2-naphthoyl-CoA hydrolase	NA	NA	NA	NA
WP_000613005.1\|4503378_4506435_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_000248636.1\|4506823_4507936_+	AI-2E family transporter YdiK	NA	NA	NA	NA
WP_000383469.1\|4510199_4511066_+	quinate/shikimate dehydrogenase	NA	NA	NA	NA
WP_012421640.1\|4511097_4511856_+	type I 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_000347825.1\|4513609_4514761_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000284799.1\|4514803_4515715_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000692130.1\|4516030_4516795_+	electron transfer flavoprotein	NA	NA	NA	NA
WP_000080718.1\|4516814_4517753_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_001282575.1\|4517808_4519098_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000081071.1\|4519094_4519388_+	ferredoxin family protein	NA	NA	NA	NA
WP_012421423.1\|4519444_4521091_+	medium-chain fatty-acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.5e-32	25.0
WP_000069350.1\|4521147_4523526_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	9.4e-172	36.7
WP_088895425.1\|4523675_4524904_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000368051.1\|4525194_4526028_+	posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR	NA	NA	NA	NA
WP_001082223.1\|4526184_4527231_+	3-deoxy-7-phosphoheptulonate synthase AroH	S4W5F1	Pandoravirus	2.7e-83	47.4
WP_012421553.1\|4527362_4527554_+	hemin uptake protein HemP	NA	NA	NA	NA
WP_000175717.1\|4527557_4528994_-	YdiU family protein	NA	NA	NA	NA
WP_001209786.1\|4530016_4530481_-	C40 family peptidase	A0A217EQL1	Bacillus_phage	1.1e-12	35.3
WP_000029465.1\|4530558_4531308_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	28.2
WP_000956508.1\|4531920_4532901_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_000997174.1\|4533109_4533439_-	hypothetical protein	NA	NA	NA	NA
WP_000668483.1\|4533546_4533909_-	hypothetical protein	NA	NA	NA	NA
WP_000336261.1\|4533911_4534850_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	1.1e-80	51.1
WP_000904672.1\|4534938_4535247_-	helix-turn-helix domain-containing protein	A0A0M5M1I9	Salmonella_phage	1.3e-22	53.1
WP_001151410.1\|4535343_4535622_+	hypothetical protein	NA	NA	NA	NA
WP_000917812.1\|4535636_4535975_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	1.1e-49	83.6
WP_000158971.1\|4535985_4536273_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	7.8e-33	76.8
WP_000514280.1\|4536284_4536521_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	3.7e-28	100.0
WP_012421549.1\|4539291_4539909_+	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	5.0e-109	98.5
WP_000211290.1\|4539913_4540225_+	plasmid partitioning/stability family protein	A0A0A7NPT5	Enterobacteria_phage	3.6e-47	94.2
WP_001289966.1\|4540288_4540879_+	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	3.6e-32	51.3
WP_072037216.1\|4542414_4543539_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	6.1e-206	96.8
WP_000072327.1\|4544811_4545204_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_001437610.1\|4545200_4545608_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.5e-66	98.5
WP_000920592.1\|4545745_4546213_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.2e-85	99.4
WP_000356323.1\|4546205_4546841_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.6e-113	98.6
WP_001544208.1\|4546852_4547419_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.5e-99	97.9
WP_001067548.1\|4547436_4547766_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	2.2e-55	100.0
WP_001111959.1\|4547769_4548666_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	3.5e-156	98.7
WP_000071721.1\|4548658_4549189_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	1.3e-94	100.0
WP_072037230.1\|4551648_4551954_+\|tail	phage tail protein	A0A222YYI1	Escherichia_phage	4.9e-49	93.8
4550900:4551667	attR	NA	NA	NA	NA
WP_000972139.1\|4551956_4552490_+\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	8.4e-97	99.4
WP_039059819.1\|4552518_4553046_-\|tail	tail fiber assembly protein	A0A222YWC2	Escherichia_phage	3.6e-92	97.1
WP_039059818.1\|4553049_4553886_-	hypothetical protein	Q7Y4D4	Escherichia_virus	4.6e-150	92.8
WP_000905061.1\|4553990_4554590_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_000979945.1\|4554618_4555107_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_039060544.1\|4555119_4557927_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	96.8
WP_039059815.1\|4557913_4558069_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	1.1e-20	94.1
WP_000651580.1\|4558077_4558452_-	hypothetical protein	A0A0A7NPZ0	Enterobacteria_phage	4.0e-37	73.2
WP_000005375.1\|4559794_4560979_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.1e-224	99.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041512

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041513

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection