CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041584	Campylobacter jejuni strain YH003 chromosome, complete genome	2 crisprs	DEDDh,cas14j,cas2,cas1,cas9,csa3	0	5	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041584_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041584_1

1548706-1548878

TypeII

Consensus_repeat	Method
AAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGAGAT	PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

2 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP041584_1

>merge|NZ_CP041584|1|1548706-1548878|PILER-CR,CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTTTATGTAATTTTTATAATCAAAGTATAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGGGGTGATATTGTTATGAGTATTATGCAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGATAT

>NZ_CP041584|1|1|1548706-1548878|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTTTATGTA	ATTTTTATAATCAAAGTATAAGTTTTAG
TCCCTTTTTAAATTTCTTTATGGTAAAATAGGGGTGATATTGTT	ATGAGTATTATGCAAGTTTTAG
TCCCTTTTTAAATTTCTTTATGGTAAAATAGATAT

>NZ_CP041584|1|1|1548706-1548872|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTTTATGTAATTTTTATAATCAAAGTATAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGGGTGATATTGTTATGAGTATTATGCAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041584.1\|WP_002886540.1\|1554376_1554598_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182621
NZ_CP041584.1\|WP_002858431.1\|1543907_1545056_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP041584.1\|WP_079264536.1\|1555041_1555899_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002876033.1\|1538353_1539286_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP041584.1\|WP_052796772.1\|1550327_1553282_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP041584.1\|WP_002779488.1\|1546722_1546944_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP041584.1\|WP_002869217.1\|1556259_1556472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002900976.1\|1545179_1546721_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP041584.1\|WP_002851264.1\|1539282_1539924_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP041584.1\|WP_002851537.1\|1542724_1542916_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP041584.1\|WP_024088174.1\|1542890_1543604_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP041584.1\|WP_079264288.1\|1539920_1542725_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP041584.1\|WP_002797817.1\|1549016_1549448_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP041584.1\|WP_002855371.1\|1546944_1547391_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP041584.1\|WP_002867218.1\|1558120_1558870_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP041584.1\|WP_002860686.1\|1557518_1558124_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP041584.1\|WP_002797819.1\|1549440_1550331_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP041584.1\|WP_032590681.1\|1553829_1554384_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225611
NZ_CP041584.1\|WP_052796773.1\|1547394_1548585_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP041584.1\|WP_002855427.1\|1556468_1557458_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439

Protein	Function_ID	Function_description	E-value
NZ_CP041584.1\|WP_002886540.1\|1554376_1554598_+\|hypothetical-protein	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0.00639498
NZ_CP041584.1\|WP_002858431.1\|1543907_1545056_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP041584.1\|WP_002876033.1\|1538353_1539286_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	1.08946e-87
NZ_CP041584.1\|WP_052796772.1\|1550327_1553282_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP041584.1\|WP_002779488.1\|1546722_1546944_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP041584.1\|WP_002900976.1\|1545179_1546721_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.58293e-120
NZ_CP041584.1\|WP_002851264.1\|1539282_1539924_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP041584.1\|WP_002851537.1\|1542724_1542916_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP041584.1\|WP_024088174.1\|1542890_1543604_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000158962
NZ_CP041584.1\|WP_079264288.1\|1539920_1542725_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP041584.1\|WP_002797817.1\|1549016_1549448_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP041584.1\|WP_002855371.1\|1546944_1547391_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.29857e-42
NZ_CP041584.1\|WP_002867218.1\|1558120_1558870_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.07556e-92
NZ_CP041584.1\|WP_002860686.1\|1557518_1558124_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.32317e-69
NZ_CP041584.1\|WP_002797819.1\|1549440_1550331_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_CP041584.1\|WP_032590681.1\|1553829_1554384_+\|hypothetical-protein	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	6.37696e-13
NZ_CP041584.1\|WP_052796773.1\|1547394_1548585_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.39659e-139
NZ_CP041584.1\|WP_002855427.1\|1556468_1557458_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0

>NZ_CP041584.1|WP_052796773.1|1547394_1548585_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKALKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHIGVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDIIFMP
>NZ_CP041584.1|WP_002855371.1|1546944_1547391_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MEHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP041584.1|WP_002779488.1|1546722_1546944_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP041584.1|WP_002900976.1|1545179_1546721_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSEGELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP041584.1|WP_002858431.1|1543907_1545056_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP041584.1|WP_024088174.1|1542890_1543604_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIALAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP041584.1|WP_002851537.1|1542724_1542916_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP041584.1|WP_079264288.1|1539920_1542725_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPINTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP041584.1|WP_002851264.1|1539282_1539924_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP041584.1|WP_002876033.1|1538353_1539286_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP041584.1|WP_002797817.1|1549016_1549448_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP041584.1|WP_002797819.1|1549440_1550331_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP041584.1|WP_052796772.1|1550327_1553282_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP041584.1|WP_032590681.1|1553829_1554384_+|hypothetical-protein
MALKIVISSYAELLLLLLACMYPVLISLKIRPITTVCALSLIALDYDPKDGNSINMADMVGQSDNVVGLFLNYQIYSVITYVVIIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYTLFPWLPVIFLFIAYFFTIKLDVVIANFVRISLVFLVEFARHRNARKLGEDMMVILKGYG
>NZ_CP041584.1|WP_002886540.1|1554376_1554598_+|hypothetical-protein
MAEIFISVVSIIIAAGVCAKGIKALGGVNILTNAVSNLGTGNFAWFGILLSIAILSFLVYFANAILNRICIKI
>NZ_CP041584.1|WP_079264536.1|1555041_1555899_-|hypothetical-protein
MALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGLVFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILNLLVLTFSFILEVISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIWQGLSVFGSHLLFIPDFMVDQQIVYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLIFAFYVCIEILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLMLKGQKNVKIC
>NZ_CP041584.1|WP_002869217.1|1556259_1556472_-|hypothetical-protein
MKTNYYDYLCAKMYVILPIKAHKDKLKFYLSYVNKKDKIFRVNVWKWAVLIKIAKDDKTKYFCSNVLNKG
>NZ_CP041584.1|WP_002855427.1|1556468_1557458_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP041584.1|WP_002860686.1|1557518_1558124_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLDSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>NZ_CP041584.1|WP_002867218.1|1558120_1558870_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041584_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041584_2

1684380-1684465

Orphan

Consensus_repeat	Method
CCGCTTTCATAATCATTTAAAGCCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041584_2

>merge|NZ_CP041584|2|1684380-1684465|CRISPRCasFinder
CCGCTTTCATAATCATTTAAAGCCTTATGTAGTTCTTGTTTTGTTTCTTGCCAACTTTTGCCGCTTTCATAATCATTTAAAGCCTT

>NZ_CP041584|2|2|1684380-1684465|CRISPRCasFinder
CCGCTTTCATAATCATTTAAAGCCTT	ATGTAGTTCTTGTTTTGTTTCTTGCCAACTTTTG
CCGCTTTCATAATCATTTAAAGCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041584.1\|WP_002860105.1\|1681851_1682355_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|239264
NZ_CP041584.1\|WP_002860113.1\|1690592_1690961_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374224
NZ_CP041584.1\|WP_002839953.1\|1691303_1691639_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002870305.1\|1685517_1685745_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002870100.1\|1682363_1682801_-\|DUF411-domain-containing-protein	unknown	unknown	gnl\|CDD\|225564
NZ_CP041584.1\|WP_002869698.1\|1689066_1689249_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP041584.1\|WP_002869696.1\|1690957_1691185_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP041584.1\|WP_002869699.1\|1688810_1689056_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002870103.1\|1676965_1678369_+\|DUF2318-domain-containing-protein	unknown	unknown	gnl\|CDD\|226828
NZ_CP041584.1\|WP_002860103.1\|1680752_1681406_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP041584.1\|WP_002782638.1\|1689552_1690407_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002782344.1\|1684052_1684340_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP041584.1\|WP_002860104.1\|1681402_1681891_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP041584.1\|WP_079263628.1\|1678355_1679648_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP041584.1\|WP_002787577.1\|1676343_1676883_+\|iron-transporter	unknown	unknown	gnl\|CDD\|226001
NZ_CP041584.1\|WP_079461897.1\|1687644_1688325_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002870101.1\|1679637_1680756_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_CP041584.1\|WP_002860109.1\|1685010_1685379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002860108.1\|1683100_1683517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041584.1\|WP_002870306.1\|1685994_1686201_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041584.1\|WP_002860105.1\|1681851_1682355_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	7.68116e-09
NZ_CP041584.1\|WP_002870100.1\|1682363_1682801_-\|DUF411-domain-containing-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	2.42537e-70
NZ_CP041584.1\|WP_002869696.1\|1690957_1691185_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	2.34292e-07
NZ_CP041584.1\|WP_002870103.1\|1676965_1678369_+\|DUF2318-domain-containing-protein	gnl\|CDD\|226828	COG4393, COG4393, Predicted membrane protein [Function unknown].	0
NZ_CP041584.1\|WP_002869698.1\|1689066_1689249_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.63564e-07
NZ_CP041584.1\|WP_002860113.1\|1690592_1690961_-\|hypothetical-protein	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	9.52232e-09
NZ_CP041584.1\|WP_002782344.1\|1684052_1684340_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	0.00445178
NZ_CP041584.1\|WP_002860104.1\|1681402_1681891_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	2.39167e-15
NZ_CP041584.1\|WP_079263628.1\|1678355_1679648_+\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	6.08319e-18
NZ_CP041584.1\|WP_002787577.1\|1676343_1676883_+\|iron-transporter	gnl\|CDD\|226001	COG3470, Tpd, Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism].	2.80272e-99
NZ_CP041584.1\|WP_002860103.1\|1680752_1681406_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.87069e-106
NZ_CP041584.1\|WP_002870101.1\|1679637_1680756_+\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.00883e-21

>NZ_CP041584.1|WP_002782344.1|1684052_1684340_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MQILESDLFTNELNIILSFIVRKESIKVKNTFKNDLYKALKKLDFMPYKFRKSLAFDDENVRDFIFKGYVIPYKIDKEKDLIIILGIYKENLPNF
>NZ_CP041584.1|WP_002860108.1|1683100_1683517_-|hypothetical-protein
MKKLGLVLAALVALNVSAFADLIVINKKDLVPVSASEMQNKYFQESIKSTLTEPLFKKATFYEADIVAKVGPRTYNSTQAIIQKEYSDKSNYVYYKQVLILTSNGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK
>NZ_CP041584.1|WP_002870100.1|1682363_1682801_-|DUF411-domain-containing-protein
MKKTILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYGVSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGISAPDMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL
>NZ_CP041584.1|WP_002860105.1|1681851_1682355_+|conjugal-transfer-protein-TraF
MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGFEKSLKLNDKAQNFAFVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKAWADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEKEIKKVKS
>NZ_CP041584.1|WP_002860104.1|1681402_1681891_+|TlpA-family-protein-disulfide-reductase
MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKAVKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVLAEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLTSLL
>NZ_CP041584.1|WP_002860103.1|1680752_1681406_+|ABC-transporter-ATP-binding-protein
MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSGKSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNALENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPELLLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK
>NZ_CP041584.1|WP_002870101.1|1679637_1680756_+|FtsX-like-permease-family-protein
MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFDIDIKLSKELKAYGANVMISPKQDENFISNIEYEKIKENLKARALTPFLYDFLNLGSTSGVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNPSNGKNTKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKVKTQAISNEFIDAKPISSVSLSEGLVLRKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRKKEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFRFIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE
>NZ_CP041584.1|WP_079263628.1|1678355_1679648_+|ABC-transporter-permease
MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGDEVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNITALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKDDSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNLAQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQISDGLPGAGAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRKKEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIAFIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR
>NZ_CP041584.1|WP_002870103.1|1676965_1678369_+|DUF2318-domain-containing-protein
MSIYFMHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGYFAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHYYFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLLILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSLKIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIVLYFFMVSSKPLTIDEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFDACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDVIAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKYVEENEAQFLIQRRNDVG
>NZ_CP041584.1|WP_002787577.1|1676343_1676883_+|iron-transporter
MIKKVLSVVAAAAVISTNLFAGEVPIGYPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTPK
>NZ_CP041584.1|WP_002860109.1|1685010_1685379_-|hypothetical-protein
MEKVDYCRMSCLDGKINAFKYLLDLFLSDLENENDVKTCNMFENDTSIEYVKDMLMMMLDKIKEIVIDQDNCHHNIDMYASVYHEIIKDELGKEFTPKELKELHKKQEERLLKELLEGSKKK
>NZ_CP041584.1|WP_002870305.1|1685517_1685745_+|hypothetical-protein
MTRLEFDEKIKQLGLTRKIFADIAKVSYSGISTNWKDDKEIPSWVEPFLYYYEKGLALDELLKILEKYKNKEKLE
>NZ_CP041584.1|WP_002870306.1|1685994_1686201_+|hypothetical-protein
MTNNDFESILKKCNLSKKEFATLCDLPYPTLMNWVKADKTPNWVKSWLENYIKAQKYNKIKDLIKDDL
>NZ_CP041584.1|WP_079461897.1|1687644_1688325_-|hypothetical-protein
MHLCKLNFLKDDEFESILKDYFAFSKDDKSLAFILKDKNEIKSVAIREKLFKNELVKWFKVKGSSNKFIKLIKAKEKGLLKDYCFIFSGIKEIIVSELLGLNAVCFQSDSMMKNIHSHEQINELLNLIDNKRIVFIVENDESSFKANLELLKELIQINPLEKGYCVFNYDEVKNADFIDFLAYLMKELRQDYQRDKKGLNSFFSYMEKYFKNYFNKKMNLFLKVIK
>NZ_CP041584.1|WP_002869699.1|1688810_1689056_-|hypothetical-protein
MNNKQALEYLKSELCFIFNTRFRYFDFEIFNLLEKKIQILQKLPDFEREIKELLAILESNKKLFLKKNTFIKKEQKRQILL
>NZ_CP041584.1|WP_002869698.1|1689066_1689249_-|helix-turn-helix-domain-containing-protein
MQDTNKDFLTIQEVITLYSLSKDTQNKYRMQKKIPYIKIGKKIFYEKVKLDEWFKNHTIN
>NZ_CP041584.1|WP_002782638.1|1689552_1690407_-|hypothetical-protein
MLPSFKADFEVAIKWEKERECQEAINDKIEPYYNIEIEKAKDENYLYDYLCNSWLENPLYFIFQSEECTILNNKIEEQKIALCDFLLNNDILFNSFKIFNKLSPRERVKERENIIHNLSHFVKFSMEKFLYNTIFKSEIKKTSTQIKKDNEILVKALKILDENLKDENILKNTKIVQYHFYKFCNACRKIPAAEELKNYIFTNRLLSRNIKEYINFYIKLAINKNILFSIDFNNNKNYINACNNNFDDFMFKMQEKYKLNKREVKRKELKNAIIKAFDNYLRYN
>NZ_CP041584.1|WP_002860113.1|1690592_1690961_-|hypothetical-protein
MKKDINYYLNLPYKINLVKLDDGDYFAQFDDKELNKLVLMAGDGKTPNEAIEDLKNAFACYLEEALAKNEFIPEPIQKDKSKNLAITLKNSLVDEIDFYSKKMGLSRSAFLAVSAKAYIKTL
>NZ_CP041584.1|WP_002869696.1|1690957_1691185_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MNNKEKLIKELENNPKNASFANIEKLLSWYGYKLVSIRGSHHKFKKDNKSIIVPLHKPIKEFYVKQILKLLKDEK
>NZ_CP041584.1|WP_002839953.1|1691303_1691639_-|hypothetical-protein
MQNKILDLRAFDFRKYSSSNRNFFIYENTKQGFDNIDKVNIVLNLLHTLRNRACHFENLLKIRENDNKLYPRISTKEKGTNIGLMPDKIENFLNDLICLINKDLLDYLNRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	MN530981	Campylobacter phage DA10, complete genome	31490-31517	0	1.0
NZ_CP041584_1	1.2\|1548822\|22\|NZ_CP041584\|PILER-CR	1548822-1548843	22	MN530981	Campylobacter phage DA10, complete genome	11421-11442	0	1.0
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	MN530981	Campylobacter phage DA10, complete genome	31487-31517	1	0.968
NZ_CP041584_1	1.4\|1548807\|31\|NZ_CP041584\|CRISPRCasFinder	1548807-1548837	31	MN530981	Campylobacter phage DA10, complete genome	11418-11448	1	0.968
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	40288-40315	5	0.821
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	433010-433037	5	0.821
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NC_018510	Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence	13826-13856	5	0.839
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NZ_CP013280	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-5-100K, complete sequence	28131-28161	5	0.839
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NZ_CP039726	Bacillus thuringiensis strain BT-59 plasmid p5, complete sequence	37175-37205	5	0.839
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NZ_CP009350	Bacillus thuringiensis HD1002 plasmid 4, complete sequence	56961-56991	5	0.839
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	220357-220384	6	0.786
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	AP014336	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, * SEQUENCING IN PROGRESS *	16154-16181	6	0.786
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	491165-491192	7	0.75
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	NZ_CP028875	Borreliella bavariensis PBi plasmid lp28-4_cp32-1, complete sequence	9022-9049	7	0.75
NZ_CP041584_1	1.1\|1548750\|28\|NZ_CP041584\|PILER-CR	1548750-1548777	28	MN694474	Marine virus AFVG_250M581, complete genome	35882-35909	7	0.75
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	AP014336	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, * SEQUENCING IN PROGRESS *	16154-16184	7	0.774
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	40285-40315	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	433007-433037	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	220354-220384	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	AJ972879	Yersinia phage phiR1-37 complete genome	106682-106712	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NC_016163	Yersinia phage phiR1-37, complete genome	106682-106712	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NZ_CP023681	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM39, complete sequence	7915-7945	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	CP036468	Zymomonas mobilis strain ER79ag plasmid pER79ag39, complete sequence	7919-7949	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	CP036465	Zymomonas mobilis strain ZM4* plasmid pZM39o, complete sequence	7920-7950	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	CP036461	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap39, complete sequence	7917-7947	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NC_017181	Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB03, complete sequence	973-1003	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NC_004457	Zymomonas mobilis ZM4 plasmid 1, complete sequence	40244-40274	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NZ_CP003713	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252604, complete sequence	27838-27868	8	0.742
NZ_CP041584_1	1.3\|1548741\|31\|NZ_CP041584\|CRISPRCasFinder	1548741-1548771	31	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	10952-10982	8	0.742
NZ_CP041584_1	1.4\|1548807\|31\|NZ_CP041584\|CRISPRCasFinder	1548807-1548837	31	KY971610	Pseudomonas phage PspYZU05, complete genome	126696-126726	8	0.742
NZ_CP041584_2	2.1\|1684406\|34\|NZ_CP041584\|CRISPRCasFinder	1684406-1684439	34	NZ_CP017773	Paenibacillus crassostreae strain LPB0068 plasmid pPC03, complete sequence	32641-32674	8	0.765
NZ_CP041584_1	1.4\|1548807\|31\|NZ_CP041584\|CRISPRCasFinder	1548807-1548837	31	NC_014723	Paraburkholderia rhizoxinica HKI 454 plasmid pBRH02, complete sequence	167042-167072	9	0.71
NZ_CP041584_2	2.1\|1684406\|34\|NZ_CP041584\|CRISPRCasFinder	1684406-1684439	34	MN694478	Marine virus AFVG_250M504, complete genome	19978-20011	9	0.735
NZ_CP041584_2	2.1\|1684406\|34\|NZ_CP041584\|CRISPRCasFinder	1684406-1684439	34	MN694270	Marine virus AFVG_250M505, complete genome	20095-20128	9	0.735
NZ_CP041584_2	2.1\|1684406\|34\|NZ_CP041584\|CRISPRCasFinder	1684406-1684439	34	MN694656	Marine virus AFVG_250M501, complete genome	19707-19740	9	0.735
NZ_CP041584_2	2.1\|1684406\|34\|NZ_CP041584\|CRISPRCasFinder	1684406-1684439	34	MN693919	Marine virus AFVG_250M503, complete genome	16182-16215	9	0.735
NZ_CP041584_2	2.1\|1684406\|34\|NZ_CP041584\|CRISPRCasFinder	1684406-1684439	34	MN694712	Marine virus AFVG_250M502, complete genome	16180-16213	9	0.735

1. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctttatgtaatttttataatcaaagtat	CRISPR spacer
ctttatgtaatttttataatcaaagtat	Protospacer
****************************

2. spacer 1.2|1548822|22|NZ_CP041584|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gatattgttatgagtattatgc	CRISPR spacer
gatattgttatgagtattatgc	Protospacer
**********************

3. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ctttatgtaatttttataatcaaagtataaa	Protospacer
******************************.

4. spacer 1.4|1548807|31|NZ_CP041584|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

aggggtgatattgttatgagtattatgcaag	CRISPR spacer
aggggtgatattgttatgagtattatgcaaa	Protospacer
******************************.

5. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 5, identity: 0.821

ctttatgtaatttttataatcaaagtat	CRISPR spacer
gtgagtgtaatttttgtaatcaaagtat	Protospacer
 *  .**********.************

6. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 5, identity: 0.821

ctttatgtaatttttataatcaaagtat	CRISPR spacer
gtgagtgtaatttttgtaatcaaagtat	Protospacer
 *  .**********.************

7. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NC_018510 (Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence) position: , mismatch: 5, identity: 0.839

---ctttatgtaatttttataatcaaagtataag	CRISPR spacer
agtcttta---aatttttataatcaaagtgaaag	Protospacer
   *****   ******************. ***

8. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NZ_CP013280 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-5-100K, complete sequence) position: , mismatch: 5, identity: 0.839

---ctttatgtaatttttataatcaaagtataag	CRISPR spacer
agtcttta---aatttttataatcaaagtgaaag	Protospacer
   *****   ******************. ***

9. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NZ_CP039726 (Bacillus thuringiensis strain BT-59 plasmid p5, complete sequence) position: , mismatch: 5, identity: 0.839

---ctttatgtaatttttataatcaaagtataag	CRISPR spacer
agtcttta---aatttttataatcaaagtgaaag	Protospacer
   *****   ******************. ***

10. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NZ_CP009350 (Bacillus thuringiensis HD1002 plasmid 4, complete sequence) position: , mismatch: 5, identity: 0.839

---ctttatgtaatttttataatcaaagtataag	CRISPR spacer
agtcttta---aatttttataatcaaagtgaaag	Protospacer
   *****   ******************. ***

11. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 6, identity: 0.786

ctttatgtaatttttataatcaaagtat	CRISPR spacer
gtgagtgtaatttttgtaaccaaagtat	Protospacer
 *  .**********.***.********

12. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to AP014336 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

ctttatgtaatttttataatcaaagtat	CRISPR spacer
ctgatcgtaatttttataatcaaaataa	Protospacer
**   .******************.**

13. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 7, identity: 0.75

ctttatgtaatttttataatcaaagtat	CRISPR spacer
ataacgataatttttataatcaaaatat	Protospacer
 *    .*****************.***

14. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to NZ_CP028875 (Borreliella bavariensis PBi plasmid lp28-4_cp32-1, complete sequence) position: , mismatch: 7, identity: 0.75

ctttatgtaatttttataatcaaagtat	CRISPR spacer
tactttgtaatttatataatcaaagtca	Protospacer
. .* ******** ************

15. spacer 1.1|1548750|28|NZ_CP041584|PILER-CR matches to MN694474 (Marine virus AFVG_250M581, complete genome) position: , mismatch: 7, identity: 0.75

ctttatgtaatttttataatcaaagtat	CRISPR spacer
ctttatttaatttttataatcttcttga	Protospacer
****** **************    *.

16. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to AP014336 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.774

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ctgatcgtaatttttataatcaaaataaaaa	Protospacer
**   .******************.** **.

17. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
gtgagtgtaatttttgtaatcaaagtattca	Protospacer
 *  .**********.************  .

18. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
gtgagtgtaatttttgtaatcaaagtattca	Protospacer
 *  .**********.************  .

19. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
gtgagtgtaatttttgtaaccaaagtataca	Protospacer
 *  .**********.***.********* .

20. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to AJ972879 (Yersinia phage phiR1-37 complete genome) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttaggaataattcttataatcaaattataag	Protospacer
.*  . .*****.*********** ******

21. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NC_016163 (Yersinia phage phiR1-37, complete genome) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttaggaataattcttataatcaaattataag	Protospacer
.*  . .*****.*********** ******

22. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NZ_CP023681 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM39, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

23. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to CP036468 (Zymomonas mobilis strain ER79ag plasmid pER79ag39, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

24. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to CP036465 (Zymomonas mobilis strain ZM4* plasmid pZM39o, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

25. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to CP036461 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap39, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

26. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NC_017181 (Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB03, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

27. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NC_004457 (Zymomonas mobilis ZM4 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

28. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NZ_CP003713 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252604, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

29. spacer 1.3|1548741|31|NZ_CP041584|CRISPRCasFinder matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 8, identity: 0.742

ctttatgtaatttttataatcaaagtataag	CRISPR spacer
ttgcaaataatttttattatcaaaatataaa	Protospacer
.* .* .********** ******.*****.

30. spacer 1.4|1548807|31|NZ_CP041584|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 8, identity: 0.742

aggggtgatattgttatgagtattatgcaag	CRISPR spacer
cgctgtgatatttttatgagtattatttcac	Protospacer
 *  ******** ************* . *

31. spacer 2.1|1684406|34|NZ_CP041584|CRISPRCasFinder matches to NZ_CP017773 (Paenibacillus crassostreae strain LPB0068 plasmid pPC03, complete sequence) position: , mismatch: 8, identity: 0.765

atgtagttcttgttttgtttcttgc----caacttttg	CRISPR spacer
ttgtagttcttgttgtgtttgttgcattgcacct----	Protospacer
 ************* ***** ****    ** **

32. spacer 1.4|1548807|31|NZ_CP041584|CRISPRCasFinder matches to NC_014723 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH02, complete sequence) position: , mismatch: 9, identity: 0.71

aggggtgatattgttatgagtattatgcaag	CRISPR spacer
ctaactaatattgttatgggttttatgcaaa	Protospacer
  .. *.***********.** ********.

33. spacer 2.1|1684406|34|NZ_CP041584|CRISPRCasFinder matches to MN694478 (Marine virus AFVG_250M504, complete genome) position: , mismatch: 9, identity: 0.735

atgtagttcttgttttgtttcttgccaacttttg	CRISPR spacer
cttttcttcttgttttgttttttgcccacttcaa	Protospacer
 * *  **************.***** ****. .

34. spacer 2.1|1684406|34|NZ_CP041584|CRISPRCasFinder matches to MN694270 (Marine virus AFVG_250M505, complete genome) position: , mismatch: 9, identity: 0.735

atgtagttcttgttttgtttcttgccaacttttg	CRISPR spacer
cttttcttcttgttttgttttttgcccacttcaa	Protospacer
 * *  **************.***** ****. .

35. spacer 2.1|1684406|34|NZ_CP041584|CRISPRCasFinder matches to MN694656 (Marine virus AFVG_250M501, complete genome) position: , mismatch: 9, identity: 0.735

atgtagttcttgttttgtttcttgccaacttttg	CRISPR spacer
cttttcttcttgttttgttttttgcccacttcaa	Protospacer
 * *  **************.***** ****. .

36. spacer 2.1|1684406|34|NZ_CP041584|CRISPRCasFinder matches to MN693919 (Marine virus AFVG_250M503, complete genome) position: , mismatch: 9, identity: 0.735

atgtagttcttgttttgtttcttgccaacttttg	CRISPR spacer
cttttcttcttgttttgttttttgcccacttcaa	Protospacer
 * *  **************.***** ****. .

37. spacer 2.1|1684406|34|NZ_CP041584|CRISPRCasFinder matches to MN694712 (Marine virus AFVG_250M502, complete genome) position: , mismatch: 9, identity: 0.735

atgtagttcttgttttgtttcttgccaacttttg	CRISPR spacer
cttttcttcttgttttgttttttgcccacttcaa	Protospacer
 * *  **************.***** ****. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

586440 : 687032

103

Campylobacter_phage(43.9%)

transposase,tail,terminase,integrase,protease,plate,tRNA

attL 584136:584153|attR 620809:620826

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
584136:584153	attL	NA	NA	NA	NA
WP_143298497.1\|586440_588192_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	1.2e-09	29.9
WP_002908825.1\|588282_589143_+	NAD(+) kinase	NA	NA	NA	NA
WP_002870093.1\|589142_590666_+	DNA repair protein RecN	NA	NA	NA	NA
WP_002870095.1\|590771_592016_+	bile resistance response regulator CbrR	NA	NA	NA	NA
WP_002852210.1\|592006_592822_+	TatD family hydrolase	NA	NA	NA	NA
WP_143298499.1\|592817_593939_+	transglycosylase SLT domain-containing protein	A0A218M4G6	Pasteurella_phage	1.6e-09	34.1
WP_032582492.1\|593898_594726_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.6e-23	50.0
WP_002872380.1\|594731_595220_+	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	2.5e-15	41.2
WP_002859585.1\|595210_595726_+	hypothetical protein	NA	NA	NA	NA
WP_002859586.1\|595707_596169_+	organic solvent tolerance protein OstA	NA	NA	NA	NA
WP_002859990.1\|596165_596762_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_143298501.1\|597252_599058_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_002874300.1\|599178_600969_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	1.6e-160	47.6
WP_002867729.1\|600984_602538_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.4e-128	47.7
WP_032600601.1\|602736_603159_-	hypothetical protein	A0A0P0IY73	Acinetobacter_phage	2.5e-27	49.2
WP_002869806.1\|604352_604901_-	hypothetical protein	NA	NA	NA	NA
WP_079263615.1\|604893_606000_-	hypothetical protein	NA	NA	NA	NA
WP_002869808.1\|605986_606862_-	GTPase Era	NA	NA	NA	NA
WP_002869809.1\|606858_608178_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	2.3e-39	28.4
WP_002781630.1\|608174_608717_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002781628.1\|608716_609160_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_002867646.1\|609172_610393_-	argininosuccinate synthase	NA	NA	NA	NA
WP_002864726.1\|610548_610794_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002867644.1\|610790_611198_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002855252.1\|611190_611919_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-25	31.8
WP_002869812.1\|611918_613169_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002869813.1\|613332_614757_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_041016326.1\|614947_615646_-	hypothetical protein	NA	NA	NA	NA
WP_002804144.1\|615645_616320_-	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_002804142.1\|616469_616670_+	hypothetical protein	NA	NA	NA	NA
WP_100620785.1\|616666_618742_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_053872250.1\|618912_619836_+	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	1.0e-09	24.8
WP_002795448.1\|619838_620030_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002824157.1\|620026_620212_+	hypothetical protein	NA	NA	NA	NA
WP_052798735.1\|620268_620610_+	hypothetical protein	NA	NA	NA	NA
WP_002872701.1\|620716_621202_+	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	6.4e-19	33.3
620809:620826	attR	NA	NA	NA	NA
WP_002872702.1\|621260_622223_+	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|622219_622489_+	hypothetical protein	NA	NA	NA	NA
WP_002888024.1\|622488_623181_+	hypothetical protein	NA	NA	NA	NA
WP_002841916.1\|623177_623627_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_053872248.1\|623673_623949_+	hypothetical protein	NA	NA	NA	NA
WP_053872247.1\|623940_624612_-	deoxyribonuclease	NA	NA	NA	NA
WP_002784523.1\|624705_624990_+	DNA-binding protein	NA	NA	NA	NA
WP_053872246.1\|625137_625500_+	hypothetical protein	NA	NA	NA	NA
WP_143298502.1\|625520_626498_-\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784520.1\|626491_626683_-\|tail	tail protein	NA	NA	NA	NA
WP_002784519.1\|626675_627050_-\|tail	tail protein	NA	NA	NA	NA
WP_002888039.1\|627175_628414_-	hypothetical protein	M4M9M5	Vibrio_phage	1.9e-19	29.8
WP_004297439.1\|628415_629786_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	5.8e-17	26.6
WP_143298504.1\|629795_631466_-\|terminase	phage terminase large subunit	A0A0A1IW02	Pseudomonas_phage	5.7e-91	41.1
WP_002803360.1\|631465_632065_-	DUF1804 family protein	NA	NA	NA	NA
WP_002855185.1\|632057_632516_-	DUF1320 family protein	NA	NA	NA	NA
WP_002784507.1\|632630_633608_-	hypothetical protein	R9TRN2	Rhizobium_phage	3.3e-06	23.4
WP_002875114.1\|633610_634138_-	hypothetical protein	NA	NA	NA	NA
WP_002901531.1\|634140_634956_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784501.1\|634957_635392_-	hypothetical protein	NA	NA	NA	NA
WP_052806131.1\|635539_635929_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.4e-21	46.3
WP_002827119.1\|635939_636281_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|636277_636526_+	hypothetical protein	NA	NA	NA	NA
WP_002784492.1\|636637_636952_+	hypothetical protein	NA	NA	NA	NA
WP_002803379.1\|636951_637584_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.3e-08	34.6
WP_002795238.1\|637592_637784_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|637780_638071_+\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_052806132.1\|638067_639234_+\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002864870.1\|639230_639851_+\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	2.8e-59	97.4
WP_137075720.1\|639850_640930_+\|tail	phage tail protein	A7YGV0	Campylobacter_phage	3.9e-149	100.0
WP_002903450.1\|640939_641446_+	DUF4376 domain-containing protein	A7YGY7	Campylobacter_phage	1.2e-84	97.0
WP_061563589.1\|641442_641814_+	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	5.7e-68	99.2
WP_141079501.1\|641938_642952_+	hypothetical protein	A7YGH6	Campylobacter_phage	1.5e-187	98.5
WP_143298505.1\|642970_644164_+\|tail	phage tail sheath family protein	A7YGF4	Campylobacter_phage	3.2e-197	99.5
WP_002865376.1\|644190_644700_+\|tail	tail protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_002843342.1\|644852_645092_+\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	3.2e-11	62.5
WP_002912416.1\|645203_645509_-	hypothetical protein	A7YGX3	Campylobacter_phage	4.7e-36	90.1
WP_053872236.1\|645550_647773_+\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	0.0e+00	98.8
WP_002875578.1\|647776_648265_+	virion morphogenesis protein	A7YG96	Campylobacter_phage	1.6e-89	100.0
WP_002922158.1\|648369_649185_+	DNA adenine methylase	A7YG95	Campylobacter_phage	6.3e-152	100.0
WP_143298507.1\|649212_649500_-	hypothetical protein	A7YGG4	Campylobacter_phage	5.6e-47	98.9
WP_002875224.1\|649579_649774_-	hypothetical protein	A7YG72	Campylobacter_phage	5.1e-28	98.4
WP_002865000.1\|649783_650104_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_032582421.1\|650184_650814_-	LexA family transcriptional regulator	A7YGK7	Campylobacter_phage	2.6e-60	100.0
WP_143298509.1\|650893_652582_-	AAA family ATPase	X2KLG0	Campylobacter_phage	5.8e-83	37.6
WP_002869815.1\|658231_660205_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_002852327.1\|660358_660589_+	hypothetical protein	NA	NA	NA	NA
WP_002854947.1\|660578_660821_+	hypothetical protein	NA	NA	NA	NA
WP_002852324.1\|660817_661255_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_002860009.1\|661236_663090_+	primosomal protein N'	NA	NA	NA	NA
WP_002854766.1\|664638_665712_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_002864738.1\|665741_666440_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_010790824.1\|666529_668035_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_002876117.1\|668048_669239_+	acetate kinase	NA	NA	NA	NA
WP_143298511.1\|669266_673019_-	restriction endonuclease	A0A1B1IUC6	uncultured_Mediterranean_phage	6.2e-45	24.0
WP_002852223.1\|673167_673659_+	hypothetical protein	NA	NA	NA	NA
WP_079351421.1\|674580_675519_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_074484732.1\|677163_678552_+	cell division protein FtsA	NA	NA	NA	NA
WP_002852071.1\|678567_679680_+	cell division protein FtsZ	NA	NA	NA	NA
WP_002869823.1\|679835_680648_+	flagellar hook-basal body protein	NA	NA	NA	NA
WP_002852142.1\|680678_681470_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_002852312.1\|681536_682967_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_002852254.1\|683170_683866_+	chemotaxis protein	NA	NA	NA	NA
WP_002886337.1\|683862_685116_+	U32 family peptidase	Q6DW11	Phage_TP	5.5e-38	31.1
WP_002886339.1\|685116_685611_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_002852251.1\|685620_686157_+	DUF3972 domain-containing protein	NA	NA	NA	NA
WP_002860023.1\|686168_687032_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA

DBSCAN-SWA_2

964142 : 1016340

Phaeocystis_globosa_virus(25.0%)

integrase,protease,plate,tRNA

attL 973683:973700|attR 987477:987494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002870052.1\|964142_964661_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_002853001.1\|964759_965176_+	PepSY-like domain-containing protein	NA	NA	NA	NA
WP_002886756.1\|965184_966795_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	R4TQL5	Phaeocystis_globosa_virus	1.7e-71	44.4
WP_002870050.1\|966798_968049_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_002852957.1\|968045_969617_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_002852978.1\|969613_970669_-	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	5.7e-28	35.0
WP_002870049.1\|970714_972115_-	potassium transporter TrkA	NA	NA	NA	NA
WP_002912984.1\|972144_973266_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.7e-70	38.8
WP_002912988.1\|973267_974035_+	magnesium transporter CorA family protein	NA	NA	NA	NA
973683:973700	attL	NA	NA	NA	NA
WP_074482857.1\|974509_974938_+	hypothetical protein	NA	NA	NA	NA
WP_002887134.1\|974981_975920_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_002834760.1\|976079_976310_+	hypothetical protein	NA	NA	NA	NA
WP_032600723.1\|976321_976549_+	WGR domain-containing protein	NA	NA	NA	NA
WP_002887129.1\|977208_977496_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_002782139.1\|977914_978142_+	hypothetical protein	NA	NA	NA	NA
WP_052790989.1\|982165_982969_-	hypothetical protein	NA	NA	NA	NA
WP_020853159.1\|982991_984284_-	hypothetical protein	NA	NA	NA	NA
WP_079460556.1\|987787_989173_-	hypothetical protein	NA	NA	NA	NA
987477:987494	attR	NA	NA	NA	NA
WP_052775879.1\|989784_990294_-	hypothetical protein	NA	NA	NA	NA
WP_016818321.1\|990412_990916_-	hypothetical protein	NA	NA	NA	NA
WP_052775878.1\|990916_992449_-	hypothetical protein	NA	NA	NA	NA
WP_042635852.1\|992590_992908_-	hypothetical protein	NA	NA	NA	NA
WP_052775877.1\|992915_994439_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_002867905.1\|994453_994708_-	hypothetical protein	NA	NA	NA	NA
WP_002870192.1\|994695_995019_-	hypothetical protein	NA	NA	NA	NA
WP_043019061.1\|995545_996133_+	lysozyme	D6QWN8	uncultured_phage	1.7e-13	35.7
WP_002779560.1\|996161_996521_+	hypothetical protein	NA	NA	NA	NA
WP_002913316.1\|996789_1000722_+	hypothetical protein	NA	NA	NA	NA
WP_042635858.1\|1000740_1002009_+	hypothetical protein	NA	NA	NA	NA
WP_002779664.1\|1002012_1002912_-	FHA domain-containing protein	NA	NA	NA	NA
WP_002779662.1\|1006552_1007068_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002869988.1\|1007317_1008091_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002779660.1\|1008087_1009485_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_069360599.1\|1009494_1009920_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002800584.1\|1011380_1011866_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002869989.1\|1011867_1013322_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002779655.1\|1013324_1013717_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002779654.1\|1013713_1015435_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_072221508.1\|1015431_1016340_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_3

1457446 : 1465910

Synechococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002903944.1\|1457446_1458169_-	capsular polysaccharide biosynthesis protein	E3SJ89	Synechococcus_phage	2.9e-15	26.7
WP_002903942.1\|1458165_1459689_-	hypothetical protein	B2ZYD9	Ralstonia_phage	5.3e-35	27.5
WP_014516848.1\|1459685_1460084_-	capsule biosynthesis phosphatase	A0A2K9L0P7	Tupanvirus	1.7e-09	41.0
WP_002903935.1\|1460123_1462043_-	hypothetical protein	E3SJ94	Synechococcus_phage	2.9e-06	27.8
WP_002903931.1\|1462036_1463896_-	methyltransferase domain-containing protein	M4QRS6	Synechococcus_phage	3.0e-56	40.2
WP_002826454.1\|1463892_1464222_-	hypothetical protein	NA	NA	NA	NA
WP_014516850.1\|1464224_1464560_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002903928.1\|1464552_1465278_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	9.2e-30	33.6
WP_057981435.1\|1465271_1465910_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	6.4e-35	42.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041584

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection