CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_AP019800	Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence	0 crisprs	DinG	0	0
NZ_AP019798	Vibrio rotiferianus strain AM7 chromosome 1	0 crisprs	cas3,DinG,csa3,csx1,DEDDh,cas2,WYL	0	5
NZ_AP019799	Vibrio rotiferianus strain AM7 chromosome 2	1 crisprs	csa3,cas3,cas6f,cas7f,cas5f	1	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

681103 : 688170

Faustovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045393646.1\|681103_682318_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	7.4e-32	30.2
WP_005424883.1\|682355_682739_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_005424893.1\|682812_683136_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
WP_005424897.1\|683191_683707_+	co-chaperone HscB	NA	NA	NA	NA
WP_088881285.1\|683728_685582_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.2e-111	40.4
WP_005424889.1\|685595_685934_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005424887.1\|685979_686174_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_010446162.1\|686345_687644_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
WP_010446164.1\|687744_688170_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	3.5e-21	41.4

DBSCAN-SWA_2

761274 : 767964

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010446316.1\|761274_762414_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.8e-62	41.7
WP_143692085.1\|762431_763682_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.3e-97	47.4
WP_010446320.1\|763809_764259_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_088881255.1\|764266_765391_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.4e-45	35.7
WP_143692087.1\|765402_766056_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-34	39.5
WP_010446326.1\|766214_767324_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.0e-63	39.6
WP_005440184.1\|767493_767964_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

DBSCAN-SWA_3

984284 : 1053141

Vibrio_phage(22.22%)

protease,integrase,plate

attL 984189:984240|attR 988305:988356

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
984189:984240	attL	NA	NA	NA	NA
WP_143692194.1\|984284_985160_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JE37	uncultured_Caudovirales_phage	1.1e-13	26.0
WP_143692196.1\|986253_987024_+	hypothetical protein	A0A0S1WF56	Vibrio_phage	3.9e-10	36.4
WP_047513060.1\|988462_989059_+	hypothetical protein	NA	NA	NA	NA
988305:988356	attR	NA	NA	NA	NA
WP_143692197.1\|989113_990337_-	beta-ketoacyl-ACP synthase	NA	NA	NA	NA
WP_029788652.1\|990333_991059_-	3-oxoacyl-ACP reductase FabG	A0A0N9R355	Chrysochromulina_ericina_virus	3.7e-10	23.4
WP_138942888.1\|991055_991520_-	3-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
WP_143692199.1\|991512_992700_-	beta-ketoacyl-ACP synthase	NA	NA	NA	NA
WP_143692201.1\|992721_993333_-	DUF3261 domain-containing protein	NA	NA	NA	NA
WP_143692203.1\|993329_995672_-	MMPL family transporter	NA	NA	NA	NA
WP_045490503.1\|995643_996273_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_005446478.1\|996272_996719_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_005446480.1\|996718_998272_-	aromatic amino acid lyase	A0A1V0S940	Catovirus	5.4e-59	31.8
WP_138942884.1\|998255_999998_-	glycosyltransferase	NA	NA	NA	NA
WP_009700649.1\|999999_1000359_-	hypothetical protein	NA	NA	NA	NA
WP_172622526.1\|1000370_1001741_-	acyl-CoA synthetase	NA	NA	NA	NA
WP_138942882.1\|1001746_1002307_-	hypothetical protein	NA	NA	NA	NA
WP_005446488.1\|1002306_1002564_-	acyl carrier protein	NA	NA	NA	NA
WP_009696047.1\|1002579_1002852_-	acyl carrier protein	NA	NA	NA	NA
WP_171051998.1\|1002868_1003633_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_138942881.1\|1003629_1004355_-	beta-ketoacyl synthase chain length factor	NA	NA	NA	NA
WP_138942880.1\|1004430_1004826_+	hypothetical protein	NA	NA	NA	NA
WP_171051997.1\|1004856_1005924_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_143692205.1\|1005932_1007177_+	tryptophan 7-halogenase	NA	NA	NA	NA
WP_143692207.1\|1007366_1009058_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_143692209.1\|1009064_1009481_+	hypothetical protein	NA	NA	NA	NA
WP_143692211.1\|1009712_1010459_+	hypothetical protein	NA	NA	NA	NA
WP_143692213.1\|1010611_1011229_+	hypothetical protein	NA	NA	NA	NA
WP_143692215.1\|1011273_1011618_+	hypothetical protein	NA	NA	NA	NA
WP_010446907.1\|1011641_1011938_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_010446908.1\|1011947_1012511_-	hypothetical protein	NA	NA	NA	NA
WP_172622527.1\|1012510_1014502_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.6e-23	24.0
WP_143692219.1\|1015188_1016580_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_008219014.1\|1016606_1017137_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_008219012.1\|1017206_1017716_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_143692221.1\|1017715_1019194_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_143692222.1\|1019240_1020596_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_010446924.1\|1020592_1021009_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_143692223.1\|1021001_1022783_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_143692224.1\|1022764_1023748_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_143692225.1\|1023756_1026363_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	6.8e-83	31.9
WP_138942868.1\|1026505_1027660_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_143692226.1\|1027669_1029865_+	MFS transporter	NA	NA	NA	NA
WP_071235612.1\|1029861_1030995_+	hypothetical protein	NA	NA	NA	NA
WP_143692227.1\|1030997_1031693_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_143692228.1\|1031726_1032674_+	FHA domain-containing protein	NA	NA	NA	NA
WP_143692229.1\|1032673_1033141_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_029560942.1\|1033143_1034460_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_010446946.1\|1034467_1035610_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_143692230.1\|1035611_1039064_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_143692231.1\|1039072_1039705_+	protein kinase	NA	NA	NA	NA
WP_143692232.1\|1039720_1041622_+	hypothetical protein	NA	NA	NA	NA
WP_143692233.1\|1041688_1042654_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_172622528.1\|1043065_1044340_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_143692234.1\|1044555_1045791_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-54	32.8
WP_143692235.1\|1045883_1047491_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.4e-22	24.9
WP_143692236.1\|1047903_1048566_+	NAD-binding protein	NA	NA	NA	NA
WP_138942858.1\|1048562_1049930_+	Ktr system potassium transporter B	NA	NA	NA	NA
WP_143692237.1\|1050165_1053141_+\|protease	M6 family metalloprotease domain-containing protein	R9ZZU2	Cellulophaga_phage	3.8e-05	37.0

DBSCAN-SWA_4

2495376 : 2558594

Prochlorococcus_phage(18.18%)

protease,transposase,integrase,tRNA

attL 2503763:2503777|attR 2551558:2551572

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138954544.1\|2495376_2496780_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_138954546.1\|2499121_2501317_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_138954547.1\|2501316_2501814_+	bacterioferritin comigratory protein	NA	NA	NA	NA
WP_138954548.1\|2501928_2502393_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
2503763:2503777	attL	NA	NA	NA	NA
WP_143692811.1\|2504233_2504521_+	hypothetical protein	NA	NA	NA	NA
WP_171053637.1\|2504902_2505418_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_143692812.1\|2505810_2506275_+	hypothetical protein	NA	NA	NA	NA
WP_138954551.1\|2506781_2507255_+	hypothetical protein	NA	NA	NA	NA
WP_138954552.1\|2507740_2507965_+	hypothetical protein	NA	NA	NA	NA
WP_101905933.1\|2508125_2508794_+	hypothetical protein	NA	NA	NA	NA
WP_088881619.1\|2509073_2509967_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_088880772.1\|2510060_2510990_+	DMT family transporter	NA	NA	NA	NA
WP_143692813.1\|2511314_2512340_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_031858044.1\|2512669_2512969_+	hypothetical protein	NA	NA	NA	NA
WP_116920618.1\|2513484_2514861_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.4e-17	38.0
WP_143691916.1\|2514930_2516124_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	2.2e-100	49.0
WP_143692814.1\|2516470_2518300_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_143692815.1\|2518296_2519562_-	SIR2 family protein	NA	NA	NA	NA
WP_017189246.1\|2520046_2520184_+	hypothetical protein	NA	NA	NA	NA
WP_143692816.1\|2520248_2521319_-	AI-2E family transporter	NA	NA	NA	NA
WP_010449670.1\|2521320_2521557_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_143692817.1\|2521826_2523281_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_143692818.1\|2523297_2523648_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-19	45.6
WP_038886632.1\|2523648_2524221_+	NAD(P)H:quinone oxidoreductase	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	3.5e-16	32.4
WP_010449678.1\|2524241_2524682_+	DUF2069 domain-containing protein	NA	NA	NA	NA
WP_143692819.1\|2524795_2526073_-	DUF2066 domain-containing protein	NA	NA	NA	NA
WP_038886630.1\|2526308_2527562_+	uracil-xanthine permease	NA	NA	NA	NA
WP_005445324.1\|2527715_2528342_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_143692820.1\|2528521_2529562_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.2e-76	46.5
WP_143692821.1\|2529704_2530343_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.9e-27	39.3
WP_143692822.1\|2530432_2531278_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_005436835.1\|2531339_2531915_-	D-sedoheptulose 7-phosphate isomerase	NA	NA	NA	NA
WP_143692823.1\|2532273_2534718_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_010449700.1\|2534823_2535087_-	hypothetical protein	NA	NA	NA	NA
WP_138942675.1\|2535370_2536618_-	TIGR03503 family protein	NA	NA	NA	NA
WP_038882880.1\|2536630_2537350_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	2.4e-38	39.1
WP_005436823.1\|2537408_2537873_+	ribonuclease HI	J9Q745	Salmonella_phage	6.3e-48	57.1
WP_010449707.1\|2537869_2538625_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_010449709.1\|2538664_2539423_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_010449711.1\|2539660_2541232_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7NU10	Lactobacillus_phage	1.0e-12	35.4
WP_010449712.1\|2541228_2541915_+	DUF1282 family protein	NA	NA	NA	NA
WP_143692824.1\|2541923_2542769_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_005380372.1\|2542854_2543193_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_010449720.1\|2543421_2543736_-	cytochrome c	NA	NA	NA	NA
WP_143692825.1\|2543864_2545196_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_010449724.1\|2545299_2546259_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_143692826.1\|2546307_2549787_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	1.2e-204	36.9
WP_143692827.1\|2549879_2550518_-	ribonuclease HII	A0A0N9QYD4	Chrysochromulina_ericina_virus	1.3e-24	39.1
WP_143692828.1\|2550527_2551667_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
2551558:2551572	attR	NA	NA	NA	NA
WP_143692829.1\|2551818_2552607_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_005430234.1\|2552608_2553061_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_143692830.1\|2553211_2554243_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_010449736.1\|2554249_2554759_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_038882872.1\|2554775_2557190_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_045394151.1\|2557235_2558594_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA

DBSCAN-SWA_5

2906757 : 2924060

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045392066.1\|2906757_2909340_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	6.6e-78	37.7
WP_010450236.1\|2909479_2909950_-	recombination regulator RecX	NA	NA	NA	NA
WP_010450238.1\|2910155_2911199_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-111	60.4
WP_143692967.1\|2911399_2911882_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.4e-26	48.1
WP_143692968.1\|2911967_2914529_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	9.8e-34	22.7
WP_010450244.1\|2914617_2915604_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	5.3e-36	35.2
WP_143692969.1\|2915684_2916596_-	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	1.1e-14	34.4
WP_010450248.1\|2916610_2917237_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-37	53.9
WP_071235295.1\|2917236_2918013_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-68	54.1
WP_143692970.1\|2918012_2919056_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005425365.1\|2919101_2919578_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_138942816.1\|2919592_2920303_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.4e-06	24.0
WP_005452106.1\|2920304_2920586_-	cell division protein FtsB	NA	NA	NA	NA
WP_005425372.1\|2921039_2922341_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.5e-136	60.3
WP_005449808.1\|2922419_2924060_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.4e-155	51.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP019799

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019799_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019799_1

1763423-1763505

Unclear

Consensus_repeat	Method
CTACCTATTCGGCAGTACGCTGT	CRISPRCasFinder

1 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of NZ_AP019799_1

>merge|NZ_AP019799|1|1763423-1763505|CRISPRCasFinder
CTACCTATTCGGCAGTACGCTGTGGAGGAAGTTTAGCAGCACCAACGCCATAATTATCAGCTACCTATTCGGCAGTACACTGT

>NZ_AP019799|1|1|1763423-1763505|CRISPRCasFinder
CTACCTATTCGGCAGTACGCTGT	GGAGGAAGTTTAGCAGCACCAACGCCATAATTATCAG
CTACCTATTCGGCAGTACACTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019799.1\|WP_010451326.1\|1752962_1753400_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|366402
NZ_AP019799.1\|WP_143694126.1\|1770117_1773567_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NZ_AP019799.1\|WP_143694121.1\|1761004_1762390_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NZ_AP019799.1\|WP_143694125.1\|1768570_1770055_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_AP019799.1\|WP_143694130.1\|1777895_1778786_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019799.1\|WP_143694128.1\|1775211_1776378_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341135
NZ_AP019799.1\|WP_143694122.1\|1762383_1762932_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019799.1\|WP_143694124.1\|1767196_1768381_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_AP019799.1\|WP_031429598.1\|1763631_1764231_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_AP019799.1\|WP_138955175.1\|1755104_1755659_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NZ_AP019799.1\|WP_143694119.1\|1758000_1759881_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_AP019799.1\|WP_143694123.1\|1763028_1763235_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_AP019799.1\|WP_143694118.1\|1757377_1757998_+\|TnsA-endonuclease-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378037
NZ_AP019799.1\|WP_031429600.1\|1764233_1765289_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|274205
NZ_AP019799.1\|WP_143694129.1\|1776429_1777896_+\|DUF3696-domain-containing-protein	unknown	unknown	gnl\|CDD\|227274
NZ_AP019799.1\|WP_031429602.1\|1765294_1767196_-\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
NZ_AP019799.1\|WP_143694127.1\|1773685_1775215_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223363
NZ_AP019799.1\|WP_138955264.1\|1753477_1755010_+\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|182554
NZ_AP019799.1\|WP_143694120.1\|1759902_1760883_+\|TniB-family-NTP-binding-protein	unknown	unknown	gnl\|CDD\|377533
NZ_AP019799.1\|WP_010451329.1\|1756190_1757234_+\|GMP-reductase	unknown	unknown	gnl\|CDD\|235343

Protein	Function_ID	Function_description	E-value
NZ_AP019799.1\|WP_010451326.1\|1752962_1753400_+\|PAS-domain-containing-protein	gnl\|CDD\|366402	pfam00989, PAS, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	0.000115874
NZ_AP019799.1\|WP_143694121.1\|1761004_1762390_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	3.18745e-31
NZ_AP019799.1\|WP_143694125.1\|1768570_1770055_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	3.58164e-120
NZ_AP019799.1\|WP_143694128.1\|1775211_1776378_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341135	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2. This model contains Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2 and similar TRD-CR's. S.SonII recognizes 5'... GTCANNNNNNRTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. S.SonII TRD1-CR1 does not belong to this subfamily.	2.42084e-45
NZ_AP019799.1\|WP_143694123.1\|1763028_1763235_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.82647e-12
NZ_AP019799.1\|WP_143694124.1\|1767196_1768381_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.02742e-16
NZ_AP019799.1\|WP_031429598.1\|1763631_1764231_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	6.75446e-41
NZ_AP019799.1\|WP_138955175.1\|1755104_1755659_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	4.77823e-06
NZ_AP019799.1\|WP_143694119.1\|1758000_1759881_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.92014e-09
NZ_AP019799.1\|WP_138955264.1\|1753477_1755010_+\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	2.05846e-157
NZ_AP019799.1\|WP_143694118.1\|1757377_1757998_+\|TnsA-endonuclease-N-terminal-domain-containing-protein	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	4.76032e-15
NZ_AP019799.1\|WP_031429600.1\|1764233_1765289_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|274205	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	7.45157e-96
NZ_AP019799.1\|WP_143694129.1\|1776429_1777896_+\|DUF3696-domain-containing-protein	gnl\|CDD\|227274	COG4938, COG4938, Uncharacterized conserved protein [Function unknown].	2.09023e-12
NZ_AP019799.1\|WP_031429602.1\|1765294_1767196_-\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.94972e-51
NZ_AP019799.1\|WP_143694127.1\|1773685_1775215_+\|N-6-DNA-methylase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	6.4947e-59
NZ_AP019799.1\|WP_143694126.1\|1770117_1773567_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_AP019799.1\|WP_143694120.1\|1759902_1760883_+\|TniB-family-NTP-binding-protein	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	1.77272e-19
NZ_AP019799.1\|WP_010451329.1\|1756190_1757234_+\|GMP-reductase	gnl\|CDD\|235343	PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional.	0

>NZ_AP019799.1|WP_143694123.1|1763028_1763235_+|helix-turn-helix-domain-containing-protein
MKDLAKRFGANLRGKRRDKKVSQDQLALIADIDRSYVGRIERGEVNITLEKAYQLAEVLECDVRDLLP
>NZ_AP019799.1|WP_143694122.1|1762383_1762932_-|hypothetical-protein
MPKQYRLDSNIYQYVSQPDITDFTIVEVRDWVLECSDTYGNKDTARLFVARQIETLVDAGLLSVKRFGKKKKFFKTERFRQSALKVVTKRKRTQKEGTPSVSKNMSLLHELLSEKTNIEAELAITLAEVDEYKALMARSNDLTKLLNESYSETTQKAAALMAKLNVWTHTLSLIQREESSPC
>NZ_AP019799.1|WP_143694121.1|1761004_1762390_-|DEAD/DEAH-box-helicase-family-protein
MLRIWQQECIDEALKSFLYKKRHFLAQATPGAGKTRMAAHLAKQMFDKKLIDFVICFSPSRAVSNSIAGSFSEVLGGSFDGRLGSLGCSMTYQSLRYLDEQFWQTLSKYRVLCIFDEIHHCAGDSDTNTNSWGHHILYDVQRASTYTLALTGTPWRSDLTPVVLSSYTDPDGEIVCDYQYSLAQAVQDGVCRKPTIALIDCDESTVEIDNQVESFQSLNELISEGEINYSTILNNKLALHHVLDIAVTRLAKIRTQSPSAGGLIVAASVSHAAEIASLLKNSFGQTTTIVTYKNDDSQERIERFRSNRTEWIVSVGMVSEGTDIPRLQVCCHLSNITTELYFRQILGRILRMTSSQNQEAWLYTFAAPKLVAFAEEVEKDIPESCIYLKQCQEQSHDSEDTLSANRTSVATEHDKETLSISFSEGLSPNHSQPSQNEIDGLANLSLRNFKQRVIEAFRYGH
>NZ_AP019799.1|WP_143694120.1|1759902_1760883_+|TniB-family-NTP-binding-protein
MERQQAEATADKVKQIFIQNPKITDIIDDISDCREFSDGIHEPDCMIVVGDTGAGKTTLINKYLAKNPRSETNDGSIIPILSTSLPPNATPITASEQLLSDLGDPLAFSRGNDPVKIAKEMSDLMKLCGVELIIIDEFQHMIDRKNKQILHSAADWLKMLIVRSKIPVVLFGMPYSVLILEANNQLAGRFELQHTLEPFRLNNKENRTLYKTFLTMLDEALPFHESSALASPDMMKRIYAFSQGNLRRIRKLINRSSRLALRDNSNKILLEHFAKAAPKVSKAACEKQNPFRVNVNELRIKQPPKDIGWENYLNQQEKDLSPKDLF
>NZ_AP019799.1|WP_143694119.1|1758000_1759881_+|DDE-type-integrase/transposase/recombinase
MNDEDTERFGELFPSSSSGVQSKPKETLSLPLWEDVDLVFKDVFGVSEERRDEAIHRYNVLELLIERYGNNFSKKEIDEALPTLEEKFGSSTPSAITIYRYWRAFKKSDFQLSSLIPKITAGNTGYNLPEELEPLVQEAIKDYFSVEKQTAASAYITLETEVSRYNEMHDTQYSLFSIQSFRKRLRKHSEYEKILLRKGKSAADSTFRKVGQRPATTRALERVEADHTRLDLFVIDERHGIPLGRPWLTLLYDTHTKSIIGFYLGFEPPSYLSVSLALENAILPKDYVKDLYPSVEGRWPCYGLPEHLIVDNGAEFNSRDFKIACKALKVKVKKNPTKKPWLKGSVERYFRTINNRLLSRIPGKSFTNVFERKDYDPLENAVIDSLLLQEMIHIWIVDIYQNGKNGLENNIPNLSWIDAVNSSVPPRPFNGTREELKFNLGKNYQVTLDKNGVRLGTTIRYSSARLARYFGSQTCSSRKSVKVHIKYDPSCLGRIFVLDEIKEEFFAVEAVDADYAYSVSEWLHKTCCNYARRHIRKNYNHKDVVKAWQKILCIIDDAIEKTGRSKKRNSLGITTTARVQRVKEHSERATFETKKQQTDVNAKATSDLDDEFDWDIEVNTRGWSIE
>NZ_AP019799.1|WP_143694118.1|1757377_1757998_+|TnsA-endonuclease-N-terminal-domain-containing-protein
MKKRILRNSSVKNISRFVSLKTDSIHTVESDLEFDACFHFEFSAQILTFEAQPIGFEYHLDGKRRKYTPDFLVTYYDSYQPFYEIKPKRIAETEEFKETFFAKKEQALSMGNDLRVLTEDDIQIYPLLDNLKIIHRYACDDRLNSLQRQILSLFRKYGELRIEQIVQYSSVHSSRSLPALYDLIARQLLKIDMHQPINWQTPIWSA
>NZ_AP019799.1|WP_010451329.1|1756190_1757234_+|GMP-reductase
MRIEQELKLGFKDVLFRPKRSTLKSRSQVNLTRDFTFKHSGRQWSGVPVIAANMDSVGSFAMAKALAEHGVMTAVHKHYTVEDWAEFAKSADKTTLNNVMVSTGTSDADFQKTKDIMALSDEFIFICIDIANGYSEHLVDYVERVRAEFPDKVISAGNVVTGDMCEELILAGADIVKVGIGPGSVCTTRVKTGVGYPQLSAIIECGDAAHGLGGMIVGDGGCSCAGDVAKAFGGGADFVMLGGMLAGHEESGGEVIEKDGEKFMKFYGMSSKSAMDKHSGGVAGYRAAEGKTVLLPYRGSVHGTIQDILGGVRSTCTYVGAAKLKELTKRTTFIRVQEQENNVFGKE
>NZ_AP019799.1|WP_138955175.1|1755104_1755659_-|outer-membrane-beta-barrel-protein
MKNKSLLLTTVIITSLSSGNALAKSGHEVYGHTGISTFSKDGSSESGLYTQAGYNYFFTPFVALDINYTRASSFNTDVSQNNTDFTSDADGFGAGVKLIHYFGRLNVQAKGGVSSLKVTQDYWDNNQLKFVETSDRTTSPYFEVGVGMLSPWSKRLSVNLNYNYQIANDDIDISSFSLSGNYTF
>NZ_AP019799.1|WP_138955264.1|1753477_1755010_+|NAD(P)H-hydrate-dehydratase
MDFSLALKLYTAEQVKSGEVEAARLAGISMYSLMQRAGMAVYERFQTLYPRAKKVVVLCGKGNNGGDGYVFATLAQQAQLDVSVFQAGKEEALKGDAQLAFQEWVLNDGRHSDWNDWEEALFEADVIIDALLGTGLSGDVMKPLSEHIDQINRIRCPVISIDIPSGLCANTGNVLGHAVKADHTVTFIGVKQGLCTGQARSNVGELHFAGLGVEREFQSITDESALGIDQKIISRLWPEANPTTHKGDNGKLLCVGGNQGMSGAIRLCASAATRTGAGLTAAITHPNSLIPLQVASPEVMSQSITLEQLKDTDNELVKRAEWADALVLGPGLGMDSWSDGVYQLLSDVEKRKLLDADGLNLLAKCNVGEVTPSNRDDLRIITPHPGEAARLLNSNIEQIESNRFQAVRALHEQYGGVIVLKGAGTLIYDGSRMYVCLAGNEGMACGGVGDVLSGIIGGLLARGLSISIAARLGVVIHSCAADENVRKFGRVGLLASDIVTDVRGTINSHL
>NZ_AP019799.1|WP_010451326.1|1752962_1753400_+|PAS-domain-containing-protein
MLNLPAEFEQFHWMVDMVQNVDMGLVVLDRDYNVQVWNGFMTHHSGLQSHDAIGRSIFDIFPEIPQEWFKLKTKPVYDLGCRSFITWRQRPYLFRCRNVRPVTQQAEFMYQNVTLNPMRTPTGKINSLFLSINDATAEALLAQPK
>NZ_AP019799.1|WP_031429598.1|1763631_1764231_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNWYYKTVTFIPERCDNEVLAAKCLSILHGFNYKYETRSIGVSFPEWCDDTVGTKLTFISASKVELDLLLKQHYFIQMRRLGYFDISATAKIPEDCEYVLFVRNQSIDKSTAAGQVRKLKRLQKRAMARGESFNPALLRQEESMIVPHYHSLEVSSQSKNSIFRLNIQMKANHGFEGNSMFSSYGLSNTDDSYQAVPLI
>NZ_AP019799.1|WP_031429600.1|1764233_1765289_-|type-I-F-CRISPR-associated-protein-Csy3
MELPTNLAYERSINPSDVCFLVVWPDGTKEPLRYTSRIALGQMETASLAYDSQGNIKEAVTAEKLAHGNPHAGDFCSVPFGANHIECFFSVSFSSELRKPYKCNSKEVKSTIIKLIELYEKRIGWEYLVSRYLINVCNGSWLWKNTKRAYRLDVELSPWPWSEKPVLFENIHKEYREESAFEAHQRWSAIRQLVVDAFSQSNGLAIFEVKATLVLPTSSEIYPSQAFTEKENKSTNNAGNKARTFQNTQIENVRSPIIGIYKVGAAIATIDDWYPNALEPLRVSRFGAHKGDVTCYRHPSTEKDLFTILQNAEQYIERLSAPGKLSQELTSDLHYLVANLIKGGMFQHKGD
>NZ_AP019799.1|WP_031429602.1|1765294_1767196_-|hypothetical-protein
MESLKESLQSRPDDLNVELKRAFRPLTPHINIDGKELDALTVLVNLTDKTANQKNLLDRAKCKEKLRDEKWWHFCLNTIEYIQSHNLKFPDIRSGGVIRASTLGSLPEHLLSSSKLPQHFWAYSHDPKYVNKSAFLTSEFCWEGVISCLAIFLQDESHILWTKLLELGCYKKTQKAVLKKLRSFDAQKIDVALTGNYLTQLSLPNDEGSYVSFSPVASQSMQSHCYQTLSQNYQYSVTTRFSRITSMGVLPMTCGGAFRMFRSVPNFSQTPHCNLSNNERWLTKESIQSLKDYTHLNKRLITDNQKQAYRKSATDNIRKMIRAWLSHQNSEIDADTLTEYLNYDLSQMRTTKRFAYLPKLTRLLHSLLKQELKDPLFEPNNDSCNSKTGAFLLLPNIRVSGASALSSSMTVGIPSLTAFYGYVHSFECHLKESNSAAEIESFAVCIHQFHLDKRGLTKEFVEKANGTISPPSTHDDWQCDFTFSLVLKFSHQPNIPDDSIIKVLPKRLARGTAKISIADFHNIQSFDSLTSAIEHVPIQKGKWLSLYKSHLNSFDDLISSVREKRWLTPSCVGFHLLEKPSEKRGSLRGYKHAFSEPIIGLINPIVFGNKTDSNEILWRYKYHTDYISIQTEA
>NZ_AP019799.1|WP_143694124.1|1767196_1768381_-|TniQ-family-protein
MFLQRPKPYSDESLESFFIRVANKNGYSDVHRFLEATKRFLQDIDHNAYQTFPINIAKINPCSAKNSSSARTASLLKLAQLTFNEPTELFGLAINRTNLKYSPSTNAVIRGSEVFPRSLLRTKSIPCCPLCLQENGYASYLWHFEGYDHCHIHDVPLLNSCRCGAEHDYRVSSLSGMCGSCEATLAIKSREKSHNATLSVANWLAGNESKNLPDVPRSYRWGLVHWWSHINDNEFDHFSFVQFFSYWPRAFHSMIDDEIEFNLEHAIVGKKELRVKDLFGRIFFSSIRLPERNLQQNIVLGELLRHVEAHLWDNEGLLANLRMNALEATVFLNCSLDEIASMVEQRILKPNRKPKPNMPLAVNDYLFYFGDIFCLWLAEFQTDEFNRSFYVSRW
>NZ_AP019799.1|WP_143694125.1|1768570_1770055_+|sigma-54-interacting-transcriptional-regulator
MATLISWLGRTDLEQMKLNKPASIATIALKGQILDSIIILASTWDDEWHDYKEWLERKLACVGRSKTSVTIQRVRLASPIDYSAITKVMQKQLSQISAGSEHIYLNLTSGTPAMTVVSVLLGKSIAKCQLLQTSPKGEIIEVDIPVDFATEYNKSSIGAIQSLTSDIPQLSSAFESITAKSKIMQLLVKKAHRLALSDLPALVLGESGSGKEVMATAIHNASSRSDKPFRAVNCGALPENLVDSILFGHVKGAFTGADKDHSGLFEQANGGTLFLDEVGELPLNVQVKLLRALQQKEITRVGDVKSKVVDVRIIAATHQDLFNMTSQGAFREDLFYRLAVGVIEMPPLRARSEDIPELISTLMSDINQQADKHPLFESKKISTDAINFAKSYPWPGNIRELWNTLNRAVLWSESPTISAEDLQSSVLSAGRRQSSRGEFFVPGDIQQYIDTIKKDAVESALEYSRNNKSKAAEALGLKSHQTLSGWMTKLGIEE
>NZ_AP019799.1|WP_143694126.1|1770117_1773567_+|DEAD/DEAH-box-helicase-family-protein
MKTSVNFEHLRKDWPELAELGAFAEAYAVTDPQSSMVKLRCYVEKVVGYLYRELRLPVLPNASVHDKLTSASFTAIIHKDILDKFHAVRKGGNKAAHDGYVNQHDALWLLKESYLIGCWLFIAYGDGSQEECPRYTQPDNAPLEGESKADFKRKNKQLQQKLAQNSEQLTQALKELEETKEAQLLAQQTASKLKLEVDQTKADKLKRNTLKLKNSFDFNEAETRKRLIDSELRSEGWDVALAEVSTEQVSKEYEVEGQPTQSGKGRCDYVLWDDNGKPLAVIEAKKTRVDARAGQEQAKIYADGLEKQTGQRPVIFYTNGYDIWLWDDAQGYVPRKLFGYYSKDSLQYLIQQRALKKDLNSTPIDTEVAGRLYQMESITRVCERFSDKHRKALIVQATGTGKTRVSIALTKRLLDAGWAKRVLFLCDRKELRKQAANAFNEFTKEPLFVKGKSKKELASKARIVIATYPGMMQTFEEFDVGHFDLIIADESHRSIYNKYGELFKYFDALQVGLTATPVEMISRSTSQLFGCDYKMPTANYPLEQAIEEENLVPFKVVSHTTKFLRDGIKGNELTDEQIAELEDQGIDPNELDFDSKLIDKAIFNKDTNRQIIRNLMERGLKDADNQLPGKSIIFARSIKHAELIADLFAEMYPDLGGNFCRVIHSKYERADELIDNFKSAEGNKEEITIAVSVDMLDTGIDVPECINLVFAKPIKSKVKFWQMVGRGTRLCENLFGPGEHKKHFLIFDHWDNFEYFKMNPDEDDGATGKSLAQKVFEARLNLADEALKRAEMDIFDAVVPQIKADIDSLNDKTIEVRENWQTKAQLSNEKTLHQMAPDTKELLRSTMAPLMQWKPITGESEALRLDLQFLELELVKLKQPSKVDIAAMPIMDKVTTLSMHLNEVRSKASTIKQVQQPNFWNDADHQELEACRSELRTIIHLRDKGATPPPKPTPLLDVKEDAAEYRTEEVKTDIVTVDYQIYKQEVEKTLTPLFESNEVLQKIRAGQSVTEADLDTLNALVHTQNPSVDLSILKEFFPESTAGLDQILRTIVGMDAKAIENEFTAFVQQVHTHLNSRQQRFIGMLKNHLCRYGSVDIEQLYDAPFNQIDDAGLDGVFPNPAQADVVEQFVRRFSVHLGEKQSSVEKVVN
>NZ_AP019799.1|WP_143694127.1|1773685_1775215_+|N-6-DNA-methylase
MITSGALKSQIDKLWEEFWTGGITNPLTVVEQITYLMYARMLDMNERNDEKRSARTGKPFNRRFPDDKQHIRWENFRHLGAEKLYPLVKDELFPYFKELTSDDTLFAEFMKDAQLMIQKQSLLVKAVELVSELPLENKDVKGDLYEYLLSKLTTAGINGQFRTPRHIIRAMIEMLDVEETHRVCDPACGTGGFLSSTYEYLLEKYSSPEGIGEDEEGNLLYSGDLLENRTHIDTDMFHGFDFDSTMLRVAAMNLVMHGVKQPDIHYQDTLSQSFIERYPDEAKNGFDIILANPPFKGSLDEEDVDPAILKVVKTKKTELLFVALIQRMLKVGGRTATIVPDGVLFGSSKAHQTLRKHLVEDNQLEAVISLPSGVFKPYAGVSTAILIFTKGGSTNNVWFYDVQADGKSLDDKRTPIKDNDLPDLVKQYKAYQAAVMAGESTELWLDKTQKAFLVAKDDIKTNKYDLSINRYKEVVYEQESYEEPKVILGKLKALENEILADLNELESML
>NZ_AP019799.1|WP_143694128.1|1775211_1776378_+|restriction-endonuclease-subunit-S
MSWPLVKLGEVAPSKALKKPVVRDEDNVWQLNLDMIESGSGKVLNKIKAPLSEAGSSTHWFDSRHVLYSKLRPYLNKVVLPDEQGLATTELVPMLPDPELLDRRYLVHYLRSKQFVSWISDQVAGAKMPRVSMKVFWDHEIPLPPLDEQKRIAAILDRADAIRQKRKQAIELADAFLRSVFLDMFGDPVTNPKGWEVKEIDQVCTEIVDCVNRTAPTVDYETPYKMIRTTNIRNHKIDLSSVRYVEKDVYEKWVRRLKPEVGDVIFTREAPAGEAGIINFKDSVFLGQRTMHFRPESEKITSTYLLYELMAPGVQQQIARLSAGSTVTHLSVPECKKFKIRTPSIENQQRFTDIVNKVERSKKSLLASLEKSTELFNSLSQKAFSGQL
>NZ_AP019799.1|WP_143694129.1|1776429_1777896_+|DUF3696-domain-containing-protein
MKITSLTIAGFKGIKNKATIPLAPITLFFGANSTGKSTVLHALLYLYEVVAKRNFDAQYSSVAGESLYFGGFQNIVHGKDLNGVITLGATLDFRDGAADIWDDYLSDSERWLLESHLGFTPDSDADVVSFELDIQWDHTKNRALISRYECKSQGIKYFKITAQAGRPDCQITHYQPLPHWEVDESFKVENLFDSGQWEDVSINSQDALPNIYKRLDLSEPPFEWSEVFEDQPLAAQLFAEASLSQAAFASLKLLVKKLEDLLHIGPLRIVPTRATVLNKNTNTQRWYDGTAGWETFAFSSESVKTNTNEKFLSSAFFGTNYCFEAPAYGEASLSEKSVILKDSHTDIPLLPSSVGVGVSQVFPFVVATSLEQDLIVSCEQPELHIHPKWQLALGDMMLEATKKNSDRMFLVETHSEHLLLRLLKRRRQTADEEIEYEPFGCKKRDVQIVFCEQSEGKTRLIPIKTTDEGEFDAPWPNGFFEERREELF
>NZ_AP019799.1|WP_143694130.1|1777895_1778786_+|hypothetical-protein
MLHLEFAVAPTEVNSLADLALLDARLGFDRGAVLSGFPKAWFREVSDQLRRTHQGDTLDRATERLRAFKDNKTVAFNRAFEGAGWINAATMSHGNEPFHRVVEQSLNSIPVFVSSFVDLADDDFSYTSQFPRTAVSLAKAAKALLLGAEKVTIYDPYICFTRPGYRKTLLEIMKLCKKASVDFHIFSEEDGKPSWQVTRQALESFKGTMPDNINLYWYCADDEGSRFLHARGLFTSKGGLIYDGGFEEPNDRDQRQELMDILPMSKSLLQAKSMSYNTSFQYEDFKLVRDVWSSHP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019799_1	1.1\|1763446\|37\|NZ_AP019799\|CRISPRCasFinder	1763446-1763482	37	NZ_AP019800	Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence	27654-27690	7	0.811

1. spacer 1.1|1763446|37|NZ_AP019799|CRISPRCasFinder matches to NZ_AP019800 (Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence) position: , mismatch: 7, identity: 0.811

ggaggaagtttagcagcaccaacgccataattatcag	CRISPR spacer
ggaggaagtttagcagcacgaacgccatagtttattt	Protospacer
******************* *********.**  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1508568 : 1589827

Vibrio_phage(76.09%)

capsid,portal,integrase,tail,terminase,protease,head,plate,transposase

attL 1538894:1538912|attR 1592944:1592962

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143693988.1\|1508568_1509618_-\|protease	trypsin-like serine protease	G9E3T9	Emiliania_huxleyi_virus	2.4e-18	28.6
WP_143693989.1\|1509704_1510601_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010450931.1\|1510746_1511670_+	DMT family transporter	NA	NA	NA	NA
WP_038882910.1\|1511778_1512219_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_038882909.1\|1512306_1513059_+	phosphatase	NA	NA	NA	NA
WP_010450937.1\|1513159_1513549_+	cytochrome b562 family protein	NA	NA	NA	NA
WP_143693990.1\|1513647_1514553_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_143693991.1\|1514673_1516692_+	MBL fold metallo-hydrolase	A7J657	Paramecium_bursaria_Chlorella_virus	8.7e-102	35.7
WP_082038776.1\|1516862_1517228_+	hypothetical protein	NA	NA	NA	NA
WP_143693992.1\|1517207_1517591_-	VOC family protein	NA	NA	NA	NA
WP_143693993.1\|1517583_1518513_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010450948.1\|1518590_1519064_-	hypothetical protein	NA	NA	NA	NA
WP_143693994.1\|1519342_1520026_+	hypothetical protein	NA	NA	NA	NA
WP_143693995.1\|1520035_1520731_+	hypothetical protein	NA	NA	NA	NA
WP_172622600.1\|1520876_1521608_+	response regulator transcription factor	NA	NA	NA	NA
WP_143693996.1\|1521648_1523028_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_071234163.1\|1523321_1524515_+	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	1.5e-40	29.9
WP_143693997.1\|1524655_1525687_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	6.5e-21	88.5
WP_010450959.1\|1526027_1526546_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_138955275.1\|1526682_1526955_+	hypothetical protein	NA	NA	NA	NA
WP_138955274.1\|1527176_1527893_+	carbonic anhydrase family protein	NA	NA	NA	NA
WP_138955273.1\|1527982_1528822_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_138955272.1\|1528818_1530621_-	DUF3744 domain-containing protein	G3M9Y6	Bacillus_virus	8.5e-16	31.9
WP_005432209.1\|1530627_1531176_-	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA
WP_143693998.1\|1531486_1532617_-	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_010451026.1\|1532616_1532988_-	DUF3302 domain-containing protein	NA	NA	NA	NA
WP_138955260.1\|1533134_1534025_+	EamA family transporter	NA	NA	NA	NA
WP_138955259.1\|1534121_1535705_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.0e-16	39.6
WP_143693999.1\|1535705_1537172_-	hypothetical protein	NA	NA	NA	NA
WP_010451034.1\|1537324_1538794_-	hypothetical protein	NA	NA	NA	NA
WP_005375140.1\|1538862_1539573_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
1538894:1538912	attL	NA	NA	NA	NA
WP_071234183.1\|1539970_1540921_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_038887438.1\|1540910_1541714_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.8e-21	33.8
WP_143694000.1\|1541737_1543153_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	1.4e-61	31.0
WP_081641259.1\|1543159_1544086_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_143694001.1\|1544274_1545321_-\|integrase	tyrosine-type recombinase/integrase	R9TMQ4	Vibrio_phage	1.4e-90	47.0
WP_143694002.1\|1545323_1545806_-	hypothetical protein	NA	NA	NA	NA
WP_143694003.1\|1545830_1546439_-	helix-turn-helix domain-containing protein	A0A2I7RNF9	Vibrio_phage	1.0e-69	62.4
WP_143694004.1\|1546641_1546842_+	hypothetical protein	A0A2I7RNG9	Vibrio_phage	1.1e-22	80.3
WP_172622601.1\|1546838_1546985_+	hypothetical protein	A0A2I7RNG0	Vibrio_phage	6.0e-13	73.5
WP_143694005.1\|1546994_1547534_+	phage regulatory CII family protein	U3PIJ8	Vibrio_phage	4.6e-58	65.7
WP_143694006.1\|1547543_1547879_+	hypothetical protein	NA	NA	NA	NA
WP_143694007.1\|1547942_1548449_+	hypothetical protein	R9TNP8	Vibrio_phage	6.5e-14	52.1
WP_172622602.1\|1548445_1549051_+	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	2.6e-38	48.9
WP_143694008.1\|1549047_1549449_+	hypothetical protein	R9TRR4	Vibrio_phage	3.6e-52	72.2
WP_143694009.1\|1549449_1549677_+	hypothetical protein	R9TPY7	Vibrio_phage	2.1e-28	76.9
WP_143694010.1\|1549673_1550225_+	hypothetical protein	U3PB60	Vibrio_phage	4.0e-25	67.0
WP_143694219.1\|1550332_1552870_+	replication endonuclease	A0A166YHE2	Vibrio_phage	0.0e+00	68.1
WP_143694011.1\|1552882_1553092_+	hypothetical protein	NA	NA	NA	NA
WP_143694012.1\|1553093_1553567_+	hypothetical protein	NA	NA	NA	NA
WP_063344686.1\|1553576_1553939_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_063345119.1\|1554174_1554399_+	hypothetical protein	NA	NA	NA	NA
WP_084413342.1\|1554340_1554781_-	ogr/Delta-like zinc finger family protein	A0A2I7RNG8	Vibrio_phage	8.6e-55	67.1
WP_160161901.1\|1555002_1555152_+	hypothetical protein	NA	NA	NA	NA
WP_063345118.1\|1555195_1556221_-\|portal	phage portal protein	A0A2I7RNI9	Vibrio_phage	1.4e-148	74.3
WP_143694013.1\|1556217_1557999_-\|terminase	terminase	A0A2I7RNI3	Vibrio_phage	0.0e+00	92.7
WP_143694014.1\|1558174_1559065_+\|capsid	GPO family capsid scaffolding protein	A0A2I7RNH1	Vibrio_phage	9.5e-69	57.6
WP_143694015.1\|1559078_1560092_+\|capsid	phage major capsid protein, P2 family	A0A2I7RNH6	Vibrio_phage	8.1e-149	77.7
WP_143694016.1\|1560103_1560820_+\|terminase	terminase	A0A2I7RNJ0	Vibrio_phage	2.2e-116	83.6
WP_143694017.1\|1560930_1561392_+\|head	head completion/stabilization protein	U3PFL1	Vibrio_phage	6.9e-55	72.5
WP_143694018.1\|1561388_1561877_+\|tail	phage tail protein	U3PIL4	Vibrio_phage	1.7e-64	74.1
WP_010645241.1\|1561863_1562523_+	phage virion morphogenesis protein	U3PDG7	Vibrio_phage	1.3e-94	81.7
WP_063345111.1\|1562524_1563634_+	DUF2586 family protein	U3PB71	Vibrio_phage	4.0e-173	83.4
WP_086011830.1\|1563627_1564086_+	DUF2597 family protein	U3PCG7	Vibrio_phage	4.0e-71	84.2
WP_063345110.1\|1564094_1564304_+	TraR/DksA C4-type zinc finger protein	U3PFL5	Vibrio_phage	1.3e-21	73.9
WP_063345109.1\|1564300_1564513_+	hypothetical protein	U3PIL8	Vibrio_phage	7.3e-28	81.2
WP_143694019.1\|1564499_1565090_+	glycoside hydrolase family protein	U3PDH1	Vibrio_phage	1.2e-83	76.0
WP_143694020.1\|1565064_1565406_+	hypothetical protein	U3PB75	Vibrio_phage	9.7e-30	61.9
WP_138941791.1\|1565422_1565617_+	hypothetical protein	U3PCH1	Vibrio_phage	1.1e-17	68.3
WP_063345106.1\|1565609_1565894_+	hypothetical protein	A0A160DHS7	Vibrio_phage	9.8e-28	69.1
WP_143694021.1\|1566094_1568383_+\|tail	phage tail tape measure protein	U3PFL8	Vibrio_phage	4.8e-242	61.8
WP_138955144.1\|1568372_1568705_+	DUF2590 family protein	R9TMS7	Vibrio_phage	6.5e-39	70.6
WP_143694022.1\|1568701_1569907_+\|plate	baseplate J/gp47 family protein	R9TRT3	Vibrio_phage	1.6e-151	66.1
WP_143694023.1\|1569899_1570574_+\|tail	phage tail protein	U3PB79	Vibrio_phage	1.2e-52	55.4
WP_143694024.1\|1570574_1571486_+\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	9.8e-29	44.9
WP_138941798.1\|1571482_1571875_+	hypothetical protein	NA	NA	NA	NA
WP_143694025.1\|1571871_1572342_+	hypothetical protein	NA	NA	NA	NA
WP_143694026.1\|1572349_1573243_+	hypothetical protein	U3PIM3	Vibrio_phage	7.5e-82	53.9
WP_143694027.1\|1573230_1573704_+	DNA-binding protein	R9TPX7	Vibrio_phage	7.8e-54	70.1
WP_143694028.1\|1573700_1575335_+	hypothetical protein	R9TNN7	Vibrio_phage	1.2e-213	66.4
WP_143694029.1\|1575336_1575534_+	hypothetical protein	NA	NA	NA	NA
WP_143694030.1\|1576137_1576377_+	hypothetical protein	NA	NA	NA	NA
WP_010451046.1\|1576525_1576780_-	membrane protein	NA	NA	NA	NA
WP_010451048.1\|1577205_1578549_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	6.1e-43	31.4
WP_143694031.1\|1578718_1578910_+	hypothetical protein	NA	NA	NA	NA
WP_143694032.1\|1579292_1581305_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_143694033.1\|1581305_1583447_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_143694034.1\|1583456_1585709_+	proprotein convertase P-domain-containing protein	NA	NA	NA	NA
WP_143694035.1\|1585734_1587168_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_143694036.1\|1587169_1587739_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_001352368.1\|1588618_1589827_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
1592944:1592962	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1978606 : 2013747

uncultured_marine_virus(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001352368.1\|1978606_1979815_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_010452457.1\|1980246_1980684_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_143694175.1\|1980689_1982459_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_143694176.1\|1982422_1983439_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_143694177.1\|1983441_1984911_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_029561125.1\|1984913_1985393_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_143694178.1\|1985399_1986734_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_010452444.1\|1986736_1987510_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_143694179.1\|1987535_1990145_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	3.7e-89	30.3
WP_143694180.1\|1990147_1991728_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_143694181.1\|1991724_1992381_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_143694182.1\|1992389_1993811_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_143694183.1\|1993826_1997372_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_143694184.1\|1997426_1998692_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_143694185.1\|1999124_1999643_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_143694186.1\|1999744_2001808_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.7e-31	25.7
WP_143694187.1\|2001810_2003328_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_143694188.1\|2003406_2004255_+	ankyrin repeat domain-containing protein	A0A2P1EHQ5	Megavirus	2.9e-06	25.0
WP_143694227.1\|2004352_2005201_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_143694189.1\|2005225_2006188_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_143694190.1\|2006184_2007096_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_143694191.1\|2011999_2012530_+	DUF4303 domain-containing protein	NA	NA	NA	NA
WP_172622608.1\|2012784_2013747_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP019798

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP019799

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection