CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP019801	Thermus thermophilus strain HC11	3 crisprs	cas6,DEDDh,csa3,cas3,Cas9_archaeal	0	0	0	0
NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	3 crisprs	csx1,cas1,cas2,cas4,WYL,cas8b5,cas5,cas3,cas6,cas7b,cas8c,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10	0	41	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019801_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019801_1

931090-931727

Orphan

III-A

Consensus_repeat	Method
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	PILER-CR
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CRISPRCasFinder
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CRT

8 spacers

The CRISPR arrays of NZ_AP019801_1

>merge|NZ_AP019801|1|931090-931727|PILER-CR,CRISPRCasFinder,CRT
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACCTGAAGTGCAGGATGTGGGGCACGCCGTCGGGGAGGGCCTGGGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACCAAGTCCCCGGACGCCGCCATCGCCGCCGTGCTAAAGGGGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACCACCCACCCGGTGGGCGCGCGCCCGTTGAGGGTGCGCAAGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACGTTTCGTACAGGCACGTGGGGCACAGCCCGCTCCTGTCAAAGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACTCCAGTAGCATCCGCAAGCTCTTCGCCGCCAGGGATGGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACGTGGCGGGGATACCTAGGGCGGTGAGCACCTTGTGAGTCTGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACCTATCGTGATGGTGCCCGGGGTGGCGGTGCACCGCCACGAGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACCACCTCATCGCGAACGATGAGGGGAGAGTCTTTGTGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGATACT

>NZ_AP019801|1|1|931090-931655|PILER-CR
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CTGAAGTGCAGGATGTGGGGCACGCCGTCGGGGAGGGCCTGG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CAAGTCCCCGGACGCCGCCATCGCCGCCGTGCTAAAGGG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CACCCACCCGGTGGGCGCGCGCCCGTTGAGGGTGCGCAA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	GTTTCGTACAGGCACGTGGGGCACAGCCCGCTCCTGTCAAA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	TCCAGTAGCATCCGCAAGCTCTTCGCCGCCAGGGATG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	GTGGCGGGGATACCTAGGGCGGTGAGCACCTTGTGAGTCT
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CTATCGTGATGGTGCCCGGGGTGGCGGTGCACCGCCACGA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC

>NZ_AP019801|1|1|931090-931727|CRISPRCasFinder
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CTGAAGTGCAGGATGTGGGGCACGCCGTCGGGGAGGGCCTGG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CAAGTCCCCGGACGCCGCCATCGCCGCCGTGCTAAAGGG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CACCCACCCGGTGGGCGCGCGCCCGTTGAGGGTGCGCAA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	GTTTCGTACAGGCACGTGGGGCACAGCCCGCTCCTGTCAAA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	TCCAGTAGCATCCGCAAGCTCTTCGCCGCCAGGGATG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	GTGGCGGGGATACCTAGGGCGGTGAGCACCTTGTGAGTCT
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CTATCGTGATGGTGCCCGGGGTGGCGGTGCACCGCCACGA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CACCTCATCGCGAACGATGAGGGGAGAGTCTTTGT
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGATACT

>NZ_AP019801|1|1|931090-931726|CRT
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CTGAAGTGCAGGATGTGGGGCACGCCGTCGGGGAGGGCCTGG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CAAGTCCCCGGACGCCGCCATCGCCGCCGTGCTAAAGGG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CACCCACCCGGTGGGCGCGCGCCCGTTGAGGGTGCGCAA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	GTTTCGTACAGGCACGTGGGGCACAGCCCGCTCCTGTCAAA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	TCCAGTAGCATCCGCAAGCTCTTCGCCGCCAGGGATG
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	GTGGCGGGGATACCTAGGGCGGTGAGCACCTTGTGAGTCT
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CTATCGTGATGGTGCCCGGGGTGGCGGTGCACCGCCACGA
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CACCTCATCGCGAACGATGAGGGGAGAGTCTTTGT
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019801.1\|WP_143591004.1\|939510_940809_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_AP019801.1\|WP_143591000.1\|928387_930622_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_AP019801.1\|WP_143591839.1\|934369_935665_-\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|131739
NZ_AP019801.1\|WP_143590988.1\|921245_922400_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_AP019801.1\|WP_011173000.1\|933303_934416_-\|AmmeMemoRadiSam-system-protein-B	unknown	unknown	gnl\|CDD\|280116
NZ_AP019801.1\|WP_011172991.1\|922396_922831_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_AP019801.1\|WP_172967271.1\|923536_924142_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_AP019801.1\|WP_011228303.1\|940805_941018_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NZ_AP019801.1\|WP_011173005.1\|937468_937951_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_AP019801.1\|WP_011228285.1\|925249_926422_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_AP019801.1\|WP_143590990.1\|922832_923540_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_AP019801.1\|WP_041443404.1\|937961_939452_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_AP019801.1\|WP_011228301.1\|936245_936749_-\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|376884
NZ_AP019801.1\|WP_011228296.1\|931737_932691_-\|IS110-like-element-IS1000B-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_AP019801.1\|WP_143590992.1\|924253_925249_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_AP019801.1\|WP_143590998.1\|927141_928386_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|227325
NZ_AP019801.1\|WP_024119826.1\|936952_937468_+\|RsmD-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|367574
NZ_AP019801.1\|WP_143590994.1\|926467_926755_+\|ribosome-binding-factor-A	unknown	unknown	gnl\|CDD\|223927
NZ_AP019801.1\|WP_143590996.1\|926733_927132_+\|YbgC/FadM-family-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_AP019801.1\|WP_143591002.1\|935665_936277_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|366476

Protein	Function_ID	Function_description	E-value
NZ_AP019801.1\|WP_143591004.1\|939510_940809_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_AP019801.1\|WP_143591000.1\|928387_930622_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_AP019801.1\|WP_143591839.1\|934369_935665_-\|HDIG-domain-containing-protein	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	8.17842e-44
NZ_AP019801.1\|WP_143590988.1\|921245_922400_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.75116e-27
NZ_AP019801.1\|WP_011173000.1\|933303_934416_-\|AmmeMemoRadiSam-system-protein-B	gnl\|CDD\|280116	pfam01875, Memo, Memo-like protein. This family contains members from all branches of life. The molecular function of this protein is unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton.	2.49075e-89
NZ_AP019801.1\|WP_011172991.1\|922396_922831_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.14685e-74
NZ_AP019801.1\|WP_172967271.1\|923536_924142_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	1.4609e-39
NZ_AP019801.1\|WP_011228303.1\|940805_941018_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	3.3835e-12
NZ_AP019801.1\|WP_011173005.1\|937468_937951_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	6.3222e-102
NZ_AP019801.1\|WP_011228285.1\|925249_926422_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_AP019801.1\|WP_143590990.1\|922832_923540_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	1.61282e-42
NZ_AP019801.1\|WP_041443404.1\|937961_939452_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_AP019801.1\|WP_011228301.1\|936245_936749_-\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|376884	pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase. This family of enzymes catalyzes the transfer of an acyl group from acyl-ACP to glycerol-3-phosphate to form lysophosphatidic acid.	4.88457e-11
NZ_AP019801.1\|WP_011228296.1\|931737_932691_-\|IS110-like-element-IS1000B-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.28212e-29
NZ_AP019801.1\|WP_143590992.1\|924253_925249_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.9962e-180
NZ_AP019801.1\|WP_143590998.1\|927141_928386_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|227325	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism].	0
NZ_AP019801.1\|WP_024119826.1\|936952_937468_+\|RsmD-family-RNA-methyltransferase	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	7.13888e-38
NZ_AP019801.1\|WP_143590994.1\|926467_926755_+\|ribosome-binding-factor-A	gnl\|CDD\|223927	COG0858, RbfA, Ribosome-binding factor A [Translation, ribosomal structure and biogenesis].	2.01227e-12
NZ_AP019801.1\|WP_143590996.1\|926733_927132_+\|YbgC/FadM-family-acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.1179e-32
NZ_AP019801.1\|WP_143591002.1\|935665_936277_+\|dephospho-CoA-kinase	gnl\|CDD\|366476	pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.	2.05604e-80

>NZ_AP019801.1|WP_143591000.1|928387_930622_+|ribonuclease-R
MQETLLEFFKKTGRPHRLEEILHRFGLEKREAKAHLKALVARGLLEKKGSRYFLANRVQGPLSLHRDGYGFVRLPEGDLFVPPGYTGDAWPGDLVEARVMPPGRDGRPWGVVERVLKRARERLVGTLDFRKGRALLLPDEPNLPELPLAPEGLEGLKRGSRIVAQVHYGKRPYGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPGGYRIGVHIADVSHYVKEGSLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVRFREGVIRSVARLTYTEVEAFAEGFGLPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVEVGEEGELHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALRRTLTPARKARWQEAFPAIAEHASEMERKAEAAERELTKYYMAKWAELHVGERFLGKVTGVANFGAFVTLPNGVEGLVRLEALGPYTYSEEAMALLGPKGRRIRLGDEMEVRIAGANPRLRQVDLLPVEEAPKKTKNRKEKAKEVEMRKVVGPPKDRARDTRPERATVNTIYFGEWTPKEPEEPRPERTRARKKRRR
>NZ_AP019801.1|WP_143590998.1|927141_928386_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MDLDAFTLFERHINPGLAGLLRFTGLDRVESHAEGPYVWDTQGKRYLDFLGLYGTLNLGHRHPKVVEAVKRQLDRMPMSVRVLVSEPTARLAAKLAEITPEGLEMVFFGNSGAEAVEAAIKLARAYTGKPGIVTTQGGFHGKTMGALSLTPKPEYQDPARPLLPGVKVVPYGDLKALEEAIDETTAAVIVEPIQGEGGIRVPPEGYLRGVRELTREKGVLMIADEVQTGLGRTGKLFGVDWEGVSPDLMTLAKALGGGVMPIGACVGRREVFEVFKNNPLFHSSTFGGNPLAAAAALAAIEVTLEEDLPGRALELGRHLMEGLKVLKEEHPHLIEDVRGRGLMVGVEFTDADIGALVVAEMAERGVLTAFGLNNPKVVRLEPPLIIGKEHVDEALAVFAEALKVTEKALEGLLG
>NZ_AP019801.1|WP_143590996.1|926733_927132_+|YbgC/FadM-family-acyl-CoA-thioesterase
MESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEARGVFFPVVELGLTFRAPARFGEEVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQVGERAARIPEDIYRALSVLHLK
>NZ_AP019801.1|WP_143590994.1|926467_926755_+|ribosome-binding-factor-A
MAYGKAHLEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREEEGALWALSRAERRLVAALARRVRMRRLPRLEFLPWRASPA
>NZ_AP019801.1|WP_011228285.1|925249_926422_+|phosphoglycerate-kinase
MRTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG
>NZ_AP019801.1|WP_143590992.1|924253_925249_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKVGINGFGRIGRQVFRILHERGVEVALINDLTDNKTLAHLLKYDSTYGRFPGEVGYDEENLYVDGKAIRATAIKDPREIPWKEAGVGLVVESTGVFTDGEKARAHLEAGAKKVIITAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPTGSISDITALLKRDVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKLTKAIGNLVKVFAWYDNEWGYANRVADLVELVLKKGV
>NZ_AP019801.1|WP_172967271.1|923536_924142_-|biotin-transporter-BioY
MKTEVLPYTPLMKTIWPQRTLSRDLLLILAGSLFVALTAQIALPLPFTPVPITGQTLGVLLVGAALGSRLGFLALLAYLLEGAMGLPVFAGGTGGIAKILGPTGGFLLAFPLAAGLVGLLVERFGLDRGFFGTLLAMLLGNALLYLVGLPWLAAWLMGAGKFSGMEGLLAMGLLPFIPGDLVKAVLAALLLPTAWRFLGRK
>NZ_AP019801.1|WP_143590990.1|922832_923540_-|carbon-nitrogen-hydrolase-family-protein
MILALAHLAKRESLRDLLQALRPLAQEARERGAGLLLLPELVLGKREDPGLPQALRELAEEAGLLLLAGHLAEGKNRLQAFPQGPTYAKLHLYRAEGEEGDEGLSPGKRPVLLPWKGQVFGLALCYDLDFPELFRAYALKGAKGFLVGAAWPGEYAELLEVLARARAAENQAYLFLASRADTGSPSLFIAPDGRVLARREEEGLLVAEPDWGFLEAYRKKYPLLRHRREELYRLW
>NZ_AP019801.1|WP_011172991.1|922396_922831_-|SsrA-binding-protein-SmpB
MAPVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGKKAYEKRREDKKEAVRRALEEL
>NZ_AP019801.1|WP_143590988.1|921245_922400_-|N-acetylmuramoyl-L-alanine-amidase
MRALFLLFLAAFALAQAPKPLKVGELTGEALYPGNRGVSYGEVGLVARGLGLALWQGEGQVALGLGARYRTFPVEADEAKAASNLAAWRKDGRVYVPLRPLADALGLSYQAQVGIQLDLPWARLLQVEARPEGYLLRFSREVNAVVRPGGVLFLMAQGSHPSLVQEAMGLFLPLSRPPERVYYPGGGQVAVGLTPLPLPSPTVLLDPGHGGEDPGLEVQGLAEKEVALDLARRVAALLPGARLTRQGDETLPLEARLALARTASVVVSLHMARGREVRLYLPKDRTSPLAQSLPRLGDLPEERARLLRAYAGDPARLALALERALAAQGFAVVKAEGPYALTRVDGAAVLLEVGAERLGTEEARALVAQAIAQGIRAYLEGGAP
>NZ_AP019801.1|WP_011228296.1|931737_932691_-|IS110-like-element-IS1000B-family-transposase
MTFAGIDVSKTHLDLALVSNSPKPTRLRFPNSPEGRQALLAALAHHNPAWVALEPTSAYHLPLLKLLAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHEDLRAYTLPPETLRELKALVGYREDLAGRERTILNQMEAAEWAGSKEVLALLQKELACVKGLLGEVEARIQALLATLPEAEVLMALPGVGPQVAAAVLALLPPELWGRAKRAASYAGLIPEREESGKSVERSRLSKKGPPLLRRKLYMGALVAVRHDPEMRAFYHRLLSRGKRKKQALVAVAHKLLRRMMGRLREYYATQLDQGVA
>NZ_AP019801.1|WP_011173000.1|933303_934416_-|AmmeMemoRadiSam-system-protein-B
MEGRLRLREPQITPIEGGFLVSDPYGVYEKPLALTEGGLFLLSLMEGRTLEEVQEEVFKRHGVLVPKKELEDLAKALEEAGLLLTEKVEARLKEEEEKLKRERPMRLAGLSYPEGEREARAFLEAFRASYPGEGEEARVLLMPHLEPSRVPEVYGAALAALEKTPPPERIYLVGVAHRPLKEKAAALPVPFQTPFGPALPDLPALQALDALLPFELFNTPLAFREEHSLELPLFFLKGRFPEARVLPLLVARRSPELGEALKVVLRDFPGLLVLAVDLSHVGPRFGDTPLTRTLAEEARRRDLGFLERLAEGEPEAALAFLGANPTRIDGVEVVASLLPLLRERKGKVLAHRLDLEAPTLSAVGAGTLVL
>NZ_AP019801.1|WP_143591839.1|934369_935665_-|HDIG-domain-containing-protein
MDFPFYTPKDAFPVGGAVRDLLLGRRPTDLDYAALDPEKAAEEAKRRLGGSLFPLDPERGHYRLVVGERTLDFTPLEGRPEEDLLRRDYRVNALLWKGGAVFGLKGVEEDLRRRLLVPVREENLYQDHLRSLRGVRLAATLGFGLPRRAREALGRHARFLQAHPEALPARERVKEELARLLLSPRAAFGLRLLERVGLLGVYLPELALLVGLHQGGVHHLPAWDHTLSAVFHLLWLWPEAPLEARLAALFHDVGKPLTRRFDPEVGRFRFLGHAEVGAEIARASLFWLRFPKEVVERAAGLVRRHMDRLPEERKALRRFFLRRQDLLPDLVYLMAADRLATRGVEREAWEVLGRYEEVLKDPLPQRPLLSGEEVMALLGLQEGPEVGRALKALLEAQAEGRVGTKEEARAFLLYWRGGREAQASGTPDHPH
>NZ_AP019801.1|WP_143591002.1|935665_936277_+|dephospho-CoA-kinase
MGHEAKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARGNKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVLENTGSLEDLERALKAVLAELTGGAKGGRG
>NZ_AP019801.1|WP_011228301.1|936245_936749_-|glycerol-3-phosphate-acyltransferase
MAAALLAGYLMGSLPFAFWFAALQGKAWSGREPLWRLGPVPAGLVLLLDFAKGVFAVALGEFLARDYTGGLAAGAAAAFAHALSPWLGLRRAGSLLAPLGVLFAVDPRLLLLAGLPAGVLLLGSRKAHPALLAFALALPLAALLLGGGQAHLLFALALSLALLWPPR
>NZ_AP019801.1|WP_024119826.1|936952_937468_+|RsmD-family-RNA-methyltransferase
MVRILGGKARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFLDLFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLPLGERRVYGENALTLVEV
>NZ_AP019801.1|WP_011173005.1|937468_937951_+|pantetheine-phosphate-adenylyltransferase
MHVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSKRGQYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKLGQ
>NZ_AP019801.1|WP_041443404.1|937961_939452_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MWALLSVADKRGIVDFARGLAELGFRLLATGGTYRALREAGLPVTYISDFTGFPEILEGRVKTLHPKVHAALLARPDQEEELKALGLERIGVLAVNLYPFRETVARGASFAEALEQIDIGGPAMLRAAAKNHQAVLPVCDPEDYPRVLEALKAGPSPDFRQKLARKAFAHTALYDAAIAEWLSGEKFPEEKLLALRREASLRYGENPHQEAALYRVVGERGPLLEAQVLQGKAMSFNNYLDAEAAWNLVSEFAEPACVAVKHQNPCGVALGETPLEAYRKAYEADPVSIFGGIVAFNRPLDGPTAEALAEVFLEVVLAPSFSPEARAVLARKKNLRLLQVPFPAQGPYLDLRRLRGGVLLQDADTEDPAEPKVVTERAPTPEEWPDLRFAWKVVKHVRSNAIVVAKGGMTLGIGVGQTNRLAAARHALEAAGERAKGAVLASDAFFPFDDVVRLAASYGIAAIIQPGGSVRDQDSIRAAEEAGIAMVFTGVRHFRH
>NZ_AP019801.1|WP_143591004.1|939510_940809_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MNLKDPICAIATPPGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGGRFALGEVVDPKTGEAIDQAILLVFRAPRSYTGEDLVEFQTHGSPAVLRRVMEVLVAEGARPAGRGEFTFRAYLNGKMDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLNLLAHIQALLDYPEEGVEPMEAERTIREVLAEVEALLAQAKASRLAQKGARLALIGAPNAGKSSLLNALLGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVERALGIAEEADLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEGLDRLKEALREALLGREGGEVLLTERQVEALLRARERLEEALSLPEDLMGLALEEAARALALLTGKEVAEEVVARVFQNFCVGK
>NZ_AP019801.1|WP_011228303.1|940805_941018_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPPKTSEVARKLERLGFKPLPRRGKGGHRVYVHPDGRKVVLPLHSGEIPWGLFKTVLKQAGITEEEFRRA

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Crispr_ID: NZ_AP019801_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019801_2

932926-933113

Orphan

III-A

Consensus_repeat	Method
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_AP019801_2

>merge|NZ_AP019801|2|932926-933113|CRISPRCasFinder
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACAGCCGTAGCCGGGGCCTGGGCCATAGCCGGGGCCCCGGCCGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACACCCTCTCCCGGAGGGGGCGCTCGTACCGCCCGCTATTGCGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGATAC

>NZ_AP019801|2|2|932926-933113|CRISPRCasFinder
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	AGCCGTAGCCGGGGCCTGGGCCATAGCCGGGGCCCCGGCC
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	ACCCTCTCCCGGAGGGGGCGCTCGTACCGCCCGCTATTGC
GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019801.1\|WP_143591004.1\|939510_940809_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_AP019801.1\|WP_143591000.1\|928387_930622_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_AP019801.1\|WP_143591839.1\|934369_935665_-\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|131739
NZ_AP019801.1\|WP_011228303.1\|940805_941018_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NZ_AP019801.1\|WP_011173000.1\|933303_934416_-\|AmmeMemoRadiSam-system-protein-B	unknown	unknown	gnl\|CDD\|280116
NZ_AP019801.1\|WP_011172991.1\|922396_922831_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_AP019801.1\|WP_172967271.1\|923536_924142_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_AP019801.1\|WP_011173005.1\|937468_937951_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_AP019801.1\|WP_011228285.1\|925249_926422_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_AP019801.1\|WP_143590990.1\|922832_923540_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_AP019801.1\|WP_041443404.1\|937961_939452_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_AP019801.1\|WP_011228301.1\|936245_936749_-\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|376884
NZ_AP019801.1\|WP_011228296.1\|931737_932691_-\|IS110-like-element-IS1000B-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_AP019801.1\|WP_143590992.1\|924253_925249_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_AP019801.1\|WP_143591006.1\|941007_941238_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_AP019801.1\|WP_143590998.1\|927141_928386_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|227325
NZ_AP019801.1\|WP_024119826.1\|936952_937468_+\|RsmD-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|367574
NZ_AP019801.1\|WP_143590994.1\|926467_926755_+\|ribosome-binding-factor-A	unknown	unknown	gnl\|CDD\|223927
NZ_AP019801.1\|WP_143590996.1\|926733_927132_+\|YbgC/FadM-family-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_AP019801.1\|WP_143591002.1\|935665_936277_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|366476

Protein	Function_ID	Function_description	E-value
NZ_AP019801.1\|WP_143591004.1\|939510_940809_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_AP019801.1\|WP_143591000.1\|928387_930622_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_AP019801.1\|WP_143591839.1\|934369_935665_-\|HDIG-domain-containing-protein	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	8.17842e-44
NZ_AP019801.1\|WP_011228303.1\|940805_941018_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	3.3835e-12
NZ_AP019801.1\|WP_011173000.1\|933303_934416_-\|AmmeMemoRadiSam-system-protein-B	gnl\|CDD\|280116	pfam01875, Memo, Memo-like protein. This family contains members from all branches of life. The molecular function of this protein is unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton.	2.49075e-89
NZ_AP019801.1\|WP_011172991.1\|922396_922831_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.14685e-74
NZ_AP019801.1\|WP_172967271.1\|923536_924142_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	1.4609e-39
NZ_AP019801.1\|WP_011173005.1\|937468_937951_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	6.3222e-102
NZ_AP019801.1\|WP_011228285.1\|925249_926422_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_AP019801.1\|WP_143590990.1\|922832_923540_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	1.61282e-42
NZ_AP019801.1\|WP_041443404.1\|937961_939452_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_AP019801.1\|WP_011228301.1\|936245_936749_-\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|376884	pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase. This family of enzymes catalyzes the transfer of an acyl group from acyl-ACP to glycerol-3-phosphate to form lysophosphatidic acid.	4.88457e-11
NZ_AP019801.1\|WP_011228296.1\|931737_932691_-\|IS110-like-element-IS1000B-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.28212e-29
NZ_AP019801.1\|WP_143590992.1\|924253_925249_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.9962e-180
NZ_AP019801.1\|WP_143591006.1\|941007_941238_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.86823e-12
NZ_AP019801.1\|WP_143590998.1\|927141_928386_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|227325	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism].	0
NZ_AP019801.1\|WP_024119826.1\|936952_937468_+\|RsmD-family-RNA-methyltransferase	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	7.13888e-38
NZ_AP019801.1\|WP_143590994.1\|926467_926755_+\|ribosome-binding-factor-A	gnl\|CDD\|223927	COG0858, RbfA, Ribosome-binding factor A [Translation, ribosomal structure and biogenesis].	2.01227e-12
NZ_AP019801.1\|WP_143590996.1\|926733_927132_+\|YbgC/FadM-family-acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.1179e-32
NZ_AP019801.1\|WP_143591002.1\|935665_936277_+\|dephospho-CoA-kinase	gnl\|CDD\|366476	pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.	2.05604e-80

>NZ_AP019801.1|WP_011228296.1|931737_932691_-|IS110-like-element-IS1000B-family-transposase
MTFAGIDVSKTHLDLALVSNSPKPTRLRFPNSPEGRQALLAALAHHNPAWVALEPTSAYHLPLLKLLAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHEDLRAYTLPPETLRELKALVGYREDLAGRERTILNQMEAAEWAGSKEVLALLQKELACVKGLLGEVEARIQALLATLPEAEVLMALPGVGPQVAAAVLALLPPELWGRAKRAASYAGLIPEREESGKSVERSRLSKKGPPLLRRKLYMGALVAVRHDPEMRAFYHRLLSRGKRKKQALVAVAHKLLRRMMGRLREYYATQLDQGVA
>NZ_AP019801.1|WP_143591000.1|928387_930622_+|ribonuclease-R
MQETLLEFFKKTGRPHRLEEILHRFGLEKREAKAHLKALVARGLLEKKGSRYFLANRVQGPLSLHRDGYGFVRLPEGDLFVPPGYTGDAWPGDLVEARVMPPGRDGRPWGVVERVLKRARERLVGTLDFRKGRALLLPDEPNLPELPLAPEGLEGLKRGSRIVAQVHYGKRPYGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPGGYRIGVHIADVSHYVKEGSLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVRFREGVIRSVARLTYTEVEAFAEGFGLPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVEVGEEGELHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGLAMEHYLHFTSPIRRYPDLVVHRVLKAALRRTLTPARKARWQEAFPAIAEHASEMERKAEAAERELTKYYMAKWAELHVGERFLGKVTGVANFGAFVTLPNGVEGLVRLEALGPYTYSEEAMALLGPKGRRIRLGDEMEVRIAGANPRLRQVDLLPVEEAPKKTKNRKEKAKEVEMRKVVGPPKDRARDTRPERATVNTIYFGEWTPKEPEEPRPERTRARKKRRR
>NZ_AP019801.1|WP_143590998.1|927141_928386_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MDLDAFTLFERHINPGLAGLLRFTGLDRVESHAEGPYVWDTQGKRYLDFLGLYGTLNLGHRHPKVVEAVKRQLDRMPMSVRVLVSEPTARLAAKLAEITPEGLEMVFFGNSGAEAVEAAIKLARAYTGKPGIVTTQGGFHGKTMGALSLTPKPEYQDPARPLLPGVKVVPYGDLKALEEAIDETTAAVIVEPIQGEGGIRVPPEGYLRGVRELTREKGVLMIADEVQTGLGRTGKLFGVDWEGVSPDLMTLAKALGGGVMPIGACVGRREVFEVFKNNPLFHSSTFGGNPLAAAAALAAIEVTLEEDLPGRALELGRHLMEGLKVLKEEHPHLIEDVRGRGLMVGVEFTDADIGALVVAEMAERGVLTAFGLNNPKVVRLEPPLIIGKEHVDEALAVFAEALKVTEKALEGLLG
>NZ_AP019801.1|WP_143590996.1|926733_927132_+|YbgC/FadM-family-acyl-CoA-thioesterase
MESVTRIKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEARGVFFPVVELGLTFRAPARFGEEVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQVGERAARIPEDIYRALSVLHLK
>NZ_AP019801.1|WP_143590994.1|926467_926755_+|ribosome-binding-factor-A
MAYGKAHLEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREEEGALWALSRAERRLVAALARRVRMRRLPRLEFLPWRASPA
>NZ_AP019801.1|WP_011228285.1|925249_926422_+|phosphoglycerate-kinase
MRTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG
>NZ_AP019801.1|WP_143590992.1|924253_925249_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKVGINGFGRIGRQVFRILHERGVEVALINDLTDNKTLAHLLKYDSTYGRFPGEVGYDEENLYVDGKAIRATAIKDPREIPWKEAGVGLVVESTGVFTDGEKARAHLEAGAKKVIITAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPTGSISDITALLKRDVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKLTKAIGNLVKVFAWYDNEWGYANRVADLVELVLKKGV
>NZ_AP019801.1|WP_172967271.1|923536_924142_-|biotin-transporter-BioY
MKTEVLPYTPLMKTIWPQRTLSRDLLLILAGSLFVALTAQIALPLPFTPVPITGQTLGVLLVGAALGSRLGFLALLAYLLEGAMGLPVFAGGTGGIAKILGPTGGFLLAFPLAAGLVGLLVERFGLDRGFFGTLLAMLLGNALLYLVGLPWLAAWLMGAGKFSGMEGLLAMGLLPFIPGDLVKAVLAALLLPTAWRFLGRK
>NZ_AP019801.1|WP_143590990.1|922832_923540_-|carbon-nitrogen-hydrolase-family-protein
MILALAHLAKRESLRDLLQALRPLAQEARERGAGLLLLPELVLGKREDPGLPQALRELAEEAGLLLLAGHLAEGKNRLQAFPQGPTYAKLHLYRAEGEEGDEGLSPGKRPVLLPWKGQVFGLALCYDLDFPELFRAYALKGAKGFLVGAAWPGEYAELLEVLARARAAENQAYLFLASRADTGSPSLFIAPDGRVLARREEEGLLVAEPDWGFLEAYRKKYPLLRHRREELYRLW
>NZ_AP019801.1|WP_011172991.1|922396_922831_-|SsrA-binding-protein-SmpB
MAPVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGKKAYEKRREDKKEAVRRALEEL
>NZ_AP019801.1|WP_011173000.1|933303_934416_-|AmmeMemoRadiSam-system-protein-B
MEGRLRLREPQITPIEGGFLVSDPYGVYEKPLALTEGGLFLLSLMEGRTLEEVQEEVFKRHGVLVPKKELEDLAKALEEAGLLLTEKVEARLKEEEEKLKRERPMRLAGLSYPEGEREARAFLEAFRASYPGEGEEARVLLMPHLEPSRVPEVYGAALAALEKTPPPERIYLVGVAHRPLKEKAAALPVPFQTPFGPALPDLPALQALDALLPFELFNTPLAFREEHSLELPLFFLKGRFPEARVLPLLVARRSPELGEALKVVLRDFPGLLVLAVDLSHVGPRFGDTPLTRTLAEEARRRDLGFLERLAEGEPEAALAFLGANPTRIDGVEVVASLLPLLRERKGKVLAHRLDLEAPTLSAVGAGTLVL
>NZ_AP019801.1|WP_143591839.1|934369_935665_-|HDIG-domain-containing-protein
MDFPFYTPKDAFPVGGAVRDLLLGRRPTDLDYAALDPEKAAEEAKRRLGGSLFPLDPERGHYRLVVGERTLDFTPLEGRPEEDLLRRDYRVNALLWKGGAVFGLKGVEEDLRRRLLVPVREENLYQDHLRSLRGVRLAATLGFGLPRRAREALGRHARFLQAHPEALPARERVKEELARLLLSPRAAFGLRLLERVGLLGVYLPELALLVGLHQGGVHHLPAWDHTLSAVFHLLWLWPEAPLEARLAALFHDVGKPLTRRFDPEVGRFRFLGHAEVGAEIARASLFWLRFPKEVVERAAGLVRRHMDRLPEERKALRRFFLRRQDLLPDLVYLMAADRLATRGVEREAWEVLGRYEEVLKDPLPQRPLLSGEEVMALLGLQEGPEVGRALKALLEAQAEGRVGTKEEARAFLLYWRGGREAQASGTPDHPH
>NZ_AP019801.1|WP_143591002.1|935665_936277_+|dephospho-CoA-kinase
MGHEAKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARGNKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVLENTGSLEDLERALKAVLAELTGGAKGGRG
>NZ_AP019801.1|WP_011228301.1|936245_936749_-|glycerol-3-phosphate-acyltransferase
MAAALLAGYLMGSLPFAFWFAALQGKAWSGREPLWRLGPVPAGLVLLLDFAKGVFAVALGEFLARDYTGGLAAGAAAAFAHALSPWLGLRRAGSLLAPLGVLFAVDPRLLLLAGLPAGVLLLGSRKAHPALLAFALALPLAALLLGGGQAHLLFALALSLALLWPPR
>NZ_AP019801.1|WP_024119826.1|936952_937468_+|RsmD-family-RNA-methyltransferase
MVRILGGKARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFLDLFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLPLGERRVYGENALTLVEV
>NZ_AP019801.1|WP_011173005.1|937468_937951_+|pantetheine-phosphate-adenylyltransferase
MHVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSKRGQYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKLGQ
>NZ_AP019801.1|WP_041443404.1|937961_939452_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MWALLSVADKRGIVDFARGLAELGFRLLATGGTYRALREAGLPVTYISDFTGFPEILEGRVKTLHPKVHAALLARPDQEEELKALGLERIGVLAVNLYPFRETVARGASFAEALEQIDIGGPAMLRAAAKNHQAVLPVCDPEDYPRVLEALKAGPSPDFRQKLARKAFAHTALYDAAIAEWLSGEKFPEEKLLALRREASLRYGENPHQEAALYRVVGERGPLLEAQVLQGKAMSFNNYLDAEAAWNLVSEFAEPACVAVKHQNPCGVALGETPLEAYRKAYEADPVSIFGGIVAFNRPLDGPTAEALAEVFLEVVLAPSFSPEARAVLARKKNLRLLQVPFPAQGPYLDLRRLRGGVLLQDADTEDPAEPKVVTERAPTPEEWPDLRFAWKVVKHVRSNAIVVAKGGMTLGIGVGQTNRLAAARHALEAAGERAKGAVLASDAFFPFDDVVRLAASYGIAAIIQPGGSVRDQDSIRAAEEAGIAMVFTGVRHFRH
>NZ_AP019801.1|WP_143591004.1|939510_940809_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MNLKDPICAIATPPGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGGRFALGEVVDPKTGEAIDQAILLVFRAPRSYTGEDLVEFQTHGSPAVLRRVMEVLVAEGARPAGRGEFTFRAYLNGKMDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLNLLAHIQALLDYPEEGVEPMEAERTIREVLAEVEALLAQAKASRLAQKGARLALIGAPNAGKSSLLNALLGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVERALGIAEEADLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEGLDRLKEALREALLGREGGEVLLTERQVEALLRARERLEEALSLPEDLMGLALEEAARALALLTGKEVAEEVVARVFQNFCVGK
>NZ_AP019801.1|WP_011228303.1|940805_941018_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPPKTSEVARKLERLGFKPLPRRGKGGHRVYVHPDGRKVVLPLHSGEIPWGLFKTVLKQAGITEEEFRRA
>NZ_AP019801.1|WP_143591006.1|941007_941238_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKGMRYTVVLRPDPETPGVWLAEVPALPWCATFGHTPEEALENAKDALEAALEALEALGEAPPPDVTVAQISLDAA

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Crispr_ID: NZ_AP019801_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019801_3

1527636-1527738

Orphan

III-A

Consensus_repeat	Method
CCTTACGGGGCTCAATCCCTTGCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019801_3

>merge|NZ_AP019801|3|1527636-1527738|CRISPRCasFinder
CCTTACGGGGCTCAATCCCTTGCAACTAGGAGAGATACGATGAGGGCTCGCCGTAGGCCACTTTCAAGTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC

>NZ_AP019801|3|3|1527636-1527738|CRISPRCasFinder
CCTTACGGGGCTCAATCCCTTGCAAC	TAGGAGAGATACGATGAGGGCTCGCCGTAGGCCACTTTCAAGTCGCAATCC
CCTTACGGGGCTCAATCCCTTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019801.1\|WP_143591498.1\|1532795_1533908_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_AP019801.1\|WP_143591485.1\|1523628_1524117_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_AP019801.1\|WP_014510689.1\|1518210_1518471_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019801.1\|WP_143591475.1\|1518501_1519725_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_AP019801.1\|WP_143591491.1\|1525799_1527512_-\|M3-family-oligoendopeptidase	unknown	unknown	gnl\|CDD\|274069
NZ_AP019801.1\|WP_008633133.1\|1531453_1532731_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_AP019801.1\|WP_143591479.1\|1521347_1522208_+\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NZ_AP019801.1\|WP_143591483.1\|1523216_1523612_-\|DUF3197-domain-containing-protein	unknown	unknown	gnl\|CDD\|371529
NZ_AP019801.1\|WP_143591487.1\|1524135_1524765_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_AP019801.1\|WP_024118673.1\|1534148_1535672_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_AP019801.1\|WP_143591477.1\|1519749_1521336_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223571
NZ_AP019801.1\|WP_143591500.1\|1535813_1536254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019801.1\|WP_143591489.1\|1524714_1525785_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|211340
NZ_AP019801.1\|WP_143591494.1\|1529406_1529655_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187766
NZ_AP019801.1\|WP_011228753.1\|1537296_1537710_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|161843
NZ_AP019801.1\|WP_143591481.1\|1522198_1523155_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176233
NZ_AP019801.1\|WP_143591502.1\|1536250_1536646_-\|alpha/beta-hydrolase	unknown	unknown	unknown
NZ_AP019801.1\|WP_143591496.1\|1529653_1531453_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_AP019801.1\|WP_172967287.1\|1536642_1537275_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP019801.1\|WP_011228296.1\|1527974_1528928_+\|IS110-like-element-IS1000B-family-transposase	unknown	unknown	gnl\|CDD\|376564

Protein	Function_ID	Function_description	E-value
NZ_AP019801.1\|WP_143591498.1\|1532795_1533908_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.51293e-58
NZ_AP019801.1\|WP_143591485.1\|1523628_1524117_-\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	1.6177e-07
NZ_AP019801.1\|WP_011228753.1\|1537296_1537710_+\|PaaI-family-thioesterase	gnl\|CDD\|161843	TIGR00369, Putative_esterase, uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.	8.03813e-38
NZ_AP019801.1\|WP_143591475.1\|1518501_1519725_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_AP019801.1\|WP_143591491.1\|1525799_1527512_-\|M3-family-oligoendopeptidase	gnl\|CDD\|274069	TIGR02290, oligoendopeptidase_F, oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.	0
NZ_AP019801.1\|WP_008633133.1\|1531453_1532731_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_AP019801.1\|WP_143591479.1\|1521347_1522208_+\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	1.94919e-116
NZ_AP019801.1\|WP_143591483.1\|1523216_1523612_-\|DUF3197-domain-containing-protein	gnl\|CDD\|371529	pfam11432, DUF3197, Protein of unknown function (DUF3197). This bacterial family of proteins has no known function.	3.49682e-51
NZ_AP019801.1\|WP_143591487.1\|1524135_1524765_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	0.00167803
NZ_AP019801.1\|WP_024118673.1\|1534148_1535672_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	3.68403e-65
NZ_AP019801.1\|WP_143591477.1\|1519749_1521336_+\|AAA-family-ATPase	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	3.2974e-145
NZ_AP019801.1\|WP_143591489.1\|1524714_1525785_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|211340	cd02575, PseudoU_synth_EcTruD, Pseudouridine synthase, similar to Escherichia coli TruD. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD makes the highly phylogenetically conserved psi13 in tRNAs.	7.3003e-103
NZ_AP019801.1\|WP_143591494.1\|1529406_1529655_-\|hypothetical-protein	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.91479e-13
NZ_AP019801.1\|WP_143591481.1\|1522198_1523155_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	9.73116e-141
NZ_AP019801.1\|WP_143591496.1\|1529653_1531453_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	5.77891e-73
NZ_AP019801.1\|WP_172967287.1\|1536642_1537275_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.27011e-06
NZ_AP019801.1\|WP_011228296.1\|1527974_1528928_+\|IS110-like-element-IS1000B-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.28212e-29

>NZ_AP019801.1|WP_143591491.1|1525799_1527512_-|M3-family-oligoendopeptidase
MEWNLGDLYAGPADPRIEEDLKAALALAQGLDPQGLLDPKGAQDLLGRYEKALELAYKPLNYASLYFATRTQDPEAKALLDRVRSRFTEVRNRLVPLEVALRKLPEEAFQRLLAHPGLADLGHFLKRQRAYAPHTLSEREEELLNLKALVGRSAWSQFYTEYTGRFRFRVGERELTEMEVRALRRDPDPEVRREAHRALYGKLLAEAPTLSAVFNAVYLDYLQDLRLRGYRHPLEPVALRDEVEVREIEALLEATKAHYPLVERYYRWKAGRLGREKTPSEDLLAPLGEKPKVPFAEARALVLEAFRRFSPELAEIAREFFEKRWIDVYPRPGKRGGAFCSGGLPSTHPYILLNHTDDLDSAHTLAHELGHGVHFYLARKQRLLNFGASTPLAETASVFAEILLDDLLLERLSGEEKTLLLAERVEDAINTLFRQVMYTFFEQRSLEARKEAALSPEAFHALWDEEQRRLYGEAVAWTELDRAAWAGIPHFVHYRFYTYSYALGYLVVLALYGKYREEGEAFVPKYLRILEAGESASPKEILAEAGVELGSEAFFRYGFGVLESWLKALP
>NZ_AP019801.1|WP_143591489.1|1524714_1525785_-|tRNA-pseudouridine(13)-synthase-TruD
MDLVFRPERYPFLTQDLPGVGGEIRVEPEDFQVEEVPAYLPKGEGEHLYLLLEKEGRTTREVLEFLRDEVGVPEKEIGVAGLKDKRAKTRQWFSIPRKYEDALCLLENLQGVRLLAADLHTNKLRTGHLKGNRFHILIRRPKGGVAEAEAVLKRLAEKGVPNYYGPQRFGLGGLNPVRGYKLVKEGKGRGSPWLKRFLIGSLQSLLFNDWVALRMALGLYDRVVPGDWAKKHATGGEFLVEDPGEAERALRLEISATGPLFGKKYPEAQGEARAIEDEVLARYGLKREEFRARRGARRPIRVPLSEWKVEEAPEGLWLSFFLPKGSYATSLLREVMKVEALDHLEAEPAPEDAEGL
>NZ_AP019801.1|WP_143591487.1|1524135_1524765_+|YkgJ-family-cysteine-cluster-protein
MEAVERAFRALDEGIADYLARKGIRPSCGPGCFACCYGWVTASRLEAQALLPHLTEAQKARVLEEGPRRLALLAREKDDPGFSRRFFLSRSPCPLLEEGLCGVYAHRPLACRGVLTDEDPAYCDPENPHPAPKPHHGPGHFLRAPHRMARRRMEELWEEERAQTGFLVLGELSGLLYLLLTGLPEDREGVEARLEALGVLGGRFGFQVV
>NZ_AP019801.1|WP_143591485.1|1523628_1524117_-|DinB-family-protein
MPAPFLEPLEPGVSPAVSAWIKGLKEVALHLDKWAFDLPEEPFWRRPKEGANPIGGLVRHITGSSLRLAHYALGVELPEWARKGREWELLGAPEPKEAVEARFREAWEVLLAAFRRVEEAALAEGVRVGHLGAEAPRAHVLHHLVEHAQHHAGQVIYARKLL
>NZ_AP019801.1|WP_143591483.1|1523216_1523612_-|DUF3197-domain-containing-protein
MVRVGMRAAPRVSLEALKAALGGLKLSEAKVYLITDWQDKRDQARYALLLRTGKKDLLVPDAFGPAFPGGEEALSELVGLLLAQGARKFYEAVVSPGEMTALLDLPPEELLKRVMAIANPTDPGIYLKRAA
>NZ_AP019801.1|WP_143591481.1|1522198_1523155_-|zinc-binding-dehydrogenase
MRAVVLKGFGGLEMLEERDLPVPEPGPGEVLVRNLAVAVNPVDAKIRAAGRWAGVEPPFVLGYDAAGVVAKVGPGVKDLKEGDEVYYTPEIFGNPHGTYAEYTPVPAGIVAKKPKNLSFEEAAAIPLAGGTAWEAVVRRLAVRPGETVLVMGGAGGVGSFAVQFAKAAGAYVIATASAENLPVLKELGADLALDYRGPWAEEVLKATEGQGVDAALETAGENLVERVIPVVRPFGRIATILPPQGNLSGLYTKNQTLYGVFLTRERKRLLEMRPLFERGLARPLIAEVLPFSLENLRKAHARMDSGHGRGKIVLTFQA
>NZ_AP019801.1|WP_143591479.1|1521347_1522208_+|hydroxymethylglutaryl-CoA-lyase
MKASVRWVECPRDAWQGFSRFIPTEEKVAFLNKLLEAGFAHLDLTSFVSSKWVPQMQDAEEVLKALPPPDGRTYLAIVANEKGLERALAAPNLTHVGYPFSLSETFQRRNTNRSIEASWPLVAAMVERTGGRLGLVVYLSMAFGNPYGDPWSVEAVLEALARLREMGVREIALADTYGVAEPERIHEVLKAAVARFGPEGLGAHLHARPEGALAKVEAVLAAGVTWLEGALAGVGGCPFAGDELVGNLPTEVVLPHLEKRGLATGVDLSRLPLLAEEAARLKALYA
>NZ_AP019801.1|WP_143591477.1|1519749_1521336_+|AAA-family-ATPase
MGGMLRRLEVQNLAVIREAALDFAPGLNVLTGETGAGKSLLVDALALLLGGRAEGLIGPYGESLLVTAFFEGPPGEAVLSRRVGARSTPRVDGEVVTLKELQAEAERRLSLHAQHTALALLSPRRQREALDALLPEGLLAAYQEAYARREALLKEKAALEESLKARAEREDLLRYQIREIEEARVRPGEEEELLALAERLRHLETIRERLARALALLTEREAQDLLALAAKEVRAAARHDPALEALAKELSGAAEAVRAVARELEDHLEGLDLDPEELDRVEARLSLLERLKRKYGPTLADVLAHAQKAREELARMEGGEERLSEVERLLKALHEEVEARGQALRRAREEAARRLTEGMVRELPALGLAGARFAVVLEPLPEPGPQGLEAVAFRVAPNPNLPPAPLEALSGGELSRVALALALLTGTEAPTVVFDEVDAGVGGETAWRLAERLKRLAERRQVLVVTHLPQVAAVAQRHFRVTKTPEGVRVEPLAGEARVQEIARLLSGAYTQAALAHARELLEAQGAL
>NZ_AP019801.1|WP_143591475.1|1518501_1519725_+|serine-hydroxymethyltransferase
MVSTLKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEALARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLEGPSEALREEVRRLALAHPMP
>NZ_AP019801.1|WP_014510689.1|1518210_1518471_-|hypothetical-protein
MREKAQTGLRWALALFGALVLLVLLFNFLFVPAAPAGALAPGRCSYWFFGWRGVGTGTFFLVVLLLGFLLGLGLGLYLKRNAPRRA
>NZ_AP019801.1|WP_011228296.1|1527974_1528928_+|IS110-like-element-IS1000B-family-transposase
MTFAGIDVSKTHLDLALVSNSPKPTRLRFPNSPEGRQALLAALAHHNPAWVALEPTSAYHLPLLKLLAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHEDLRAYTLPPETLRELKALVGYREDLAGRERTILNQMEAAEWAGSKEVLALLQKELACVKGLLGEVEARIQALLATLPEAEVLMALPGVGPQVAAAVLALLPPELWGRAKRAASYAGLIPEREESGKSVERSRLSKKGPPLLRRKLYMGALVAVRHDPEMRAFYHRLLSRGKRKKQALVAVAHKLLRRMMGRLREYYATQLDQGVA
>NZ_AP019801.1|WP_143591494.1|1529406_1529655_-|hypothetical-protein
MRGSDRTGLGVHPRRSAKLGGVYLNEEGRRRLIQLFEERLLEEVSHPLGFRKPLGETIEVQAQRLKAALLGRGRYTPFYLWR
>NZ_AP019801.1|WP_143591496.1|1529653_1531453_+|RNB-domain-containing-ribonuclease
MLRGVAALVVYKGKPALAEEKGGRLELTLEGGAKLRVRPKDVLFLHPGPASLGLKVPEGEEEAAWELLEGQTVSLRELAELVYGAYTPEAALGAYLLAQKGERFVLEGEGVRARTREELRALEEAERKRAERERAFQEALKRLKEGSPAPEDRPLLAEVEALARGERKESPVLRALNLPETPETAHAFLLRLGLWQRENPHPRRLGLPLQPPDLPVPPLPEEDRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGGFRLFVHVADVAALVPPKSPLDEEALRRGANLYLPEGTVPMLPPAVTEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVRVTRLTYREALGVEALRPLEALAEAFRAKRLAAGALEIALPEVKVRVEGEEVRITPLPPYPSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPARRVEGEGLAAMWEQRKAMKRAQLKAVPAPHKGLGLPLYAQVTSPLRRYLDLVAHQQLRAWLKGERPLSQAEVLERVGAAEAVADLVREAERKSKLHWTLLHLEAKGYEGPGVLVERRGGQGVFLLPELGLSAQVALPKALPLNAEARLRFLEADLPALEARFALV
>NZ_AP019801.1|WP_008633133.1|1531453_1532731_-|NADP-dependent-isocitrate-dehydrogenase
MAYKHIRIPEEGEKITIKDGVLQVPDRPLIGFIEGDGTGPDIWRAAKPVLDAAVEKAYGGRRRIVWVEIYAGEKANQVYGEPVWLPEETLEFIREHLVAIKGPLTTPVGGGIRSINVALRQELDLYACVRPVRWFQGVPSPVKHPELVNMVVFRENTEDIYAGIEWPAGSEEVRKVLDFLKREFPKAYAKIRFPETSGLGIKPVSKEGTERLVEAAIEYAIKEDLPSVTLVHKGNIMKFTEGAFREWGYALAREKYGAVPLDGGPWHVMKNPRTGREIVIKDVIADNFLQQILLRPDEYSVIATLNLNGDYISDALAAQVGGIGIAPGANINYKTGHAVFEATHGTAPKYAGQDKVNPSSVILSGEMMLRYLGWNEAADLILQAMERTISKGLVTYDFHRLLQAEGKPATLLKTSEFGRALIEHM
>NZ_AP019801.1|WP_143591498.1|1532795_1533908_+|FAD-dependent-oxidoreductase
MPDVLVVGAGIVGAASAYRLAEKGLRVLVLEKEATYAQGSTGKSAAGVRVQFSEPLNVLLSYRSILEYREIPEAAYRPTGYLFLVPEAQAEAQEEALRVQKALGVPVEKLSLAEAQRKVPFREEGLAYATFGPMDGTIDPHGATAYYLREARRLGAEVRFSEPLLRAERREGVWRVETPKGLYEAPFLLLCTGAWTGEVGRTLGLEIPVQPVRRMVFATAPTPFPHAFPLTVDLGTGFYFRSEGGRLLFGRSNPEEPPGFREGMDWGWLGPTLEAGLARFPFLERLALDRKASWWGYYEVTPDHNPILGFVEEGLLVAAGFSGHGVQQAAMVGRLMAEEVAFGQAQSLDLTPFRLRRFWEGKPLRERGIV
>NZ_AP019801.1|WP_024118673.1|1534148_1535672_+|tRNA-lysidine(34)-synthetase-TilS
MDVPAFRERLLRLAPKDPLVLAVSGGGDSVALALLVKEAGRQAVVAHLDHGLRPESPLDQAFVRALAERLGFPFFTERVEVARIAQARGENLEAVAREVRYAFLHRVAREVGARAILTAHTLDDQAETVLLQLLQGTARATGIREREGIVVRPLLAHTREELRAYLRARGEAWREDPTNQDPALDRNFLRLFVFPLLEERFPAAKRALARFAEARAEEEGVLERQAEARLLPDPRFFVPAFRAAPLLEAPPAVRRRALRRLLEKLGLRPEARLVLLLEEALRGRPQTLPGGVLARRKGGTLFLLPPRPRLPLPPGFRRPAPGDYLERPSGRKRLVDFLAEKGVPRELKPLWPVRAEGSRVVEVLGLYPPPPEEAHMAEALAEAASAFREGEVPVGAVLVLPGRVLRAHNRVEGLRDPTAHAEMLLLREAGPEARGGRLYVTLEPCLMCHHALAQAGVEVVYGAENLKEGALTRFGLPTRARGGVRERECAKLLRDFFARLREGCRSG
>NZ_AP019801.1|WP_143591500.1|1535813_1536254_-|hypothetical-protein
MRKLLATAVLLLGLASAQFSVENLKPSFALVGGTQGFGGELSWHCLLFQPPVGEVRPALDLAYTLGGSLNGAFLFRYLYPVAEGLKAGAGLGVALPGFSFANLGLYFRADAEYDLAQFLNAPAFVGADLGLAGGTLAAQFKVGYRF
>NZ_AP019801.1|WP_143591502.1|1536250_1536646_-|alpha/beta-hydrolase
MKRAGYLHLYGLNLVFDRVGKGPPVLLVAEEASCWPEALPEGYAFYLLDLPGYGRTEGPRMAPEELAHFVAGFAVMMNLGAPWVLLRGLGLALGPHLEALGLRVLPAEGVEVAAVLSSKLSYGNIDLGGNL
>NZ_AP019801.1|WP_172967287.1|1536642_1537275_-|alpha/beta-hydrolase
MGEIRLFPGLLAPPAGLDFLLDLPSEEGLHLVAFAEGALDALKVAFQEGATSLVLLSPVLFRDALLSARLGALRFGLERGGVEGFARVGRALFFGALSVGSEEVYEAWKEGLSEAGLWRWLGRLEALADERRWLRGTEARVLVVQGALDAFTPPLHGAKVADFAKGEALRFVVDEAGHLVPWEAQEEVRDLVADFLLGEGFRPLPGGLAL
>NZ_AP019801.1|WP_011228753.1|1537296_1537710_+|PaaI-family-thioesterase
MEVKAFLERETLDRTLGVRYLKAEKDEVVAELVVTPKVHQPFGFLHGGATVALAESVASVGGFLNCPPGHAAFGLEINCNHLRKKREGTIRAVGRPLHVGRTTQVWEVKVYDEEGRLVAASRCTLAVVPLEPAKEPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019802_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019802_1

40047-41322

Unclear

Consensus_repeat	Method
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CRT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	PILER-CR
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CRISPRCasFinder

17 spacers

cas2,cas1,cas4,WYL,cas8b5,cas5,cas3,cas6

The CRISPR arrays of NZ_AP019802_1

>merge|NZ_AP019802|1|40047-41322|CRT,PILER-CR,CRISPRCasFinder
GCATAAGTGCAAGTTTTGAGTAACGAGGTTTGCAACCTGAATGGAGCTTCCCTCCCGCCCGACTGGGAAGTGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACTGGTGGAAGGAGAAGGAGGGCGTATGCCTAAGCGGAAGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACCCCCAGGGGAGGGGAGGAGGCCAGGCAAAAGGTGCTCACCGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACGGCCCCTAGGGCGATGTCCCCGGTGGGGCTGGAGAGGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACCTGGGCCAGAGCCACCGAACCAAAAAGAGCCAAAACGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACGAGAGGAGGGCGGTCATGGGGCCGGAGAGGATCTCCAGGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACCTAGGTCCACGTAGAGCCTCGGGGAGAGGGGAGGCTGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACAAGGGGGTCCGCTCTGTTGCCCACCTCGCAGGGGAACTGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACGGTGCAGATTTTGCACGGGGGGGGTGCAGATTTTGGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACAACACAGCGCTACTGCGACCTTCTACCCCTACAGCGCGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACGAAGGAGGGAGTATGCCGAAGAACCTGACGCCGCAAGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACCCGAGGGGACCTGGAGACGCTCCTCGCCCTGATGGAGGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACGGAAGTACGCTCGCCCCCAGCGCCCCTCGGCCACGTAGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACCGGCAGCCCAGGTGGTCAACGCCATCGGGAGCACCTAGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACTGTCCCCCGTCTGGGTGATGGGCTGAGTGTCCTCCAGGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACGGGCAAGGGGGGAGAGGGCCTTCCTCCCCCCCTAGTTGGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAACGGAGGTCCTGCTCGTCTGCAGGTTTCAGCTCAGGCATCGTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC

>NZ_AP019802|1|1|40047-41322|CRT
GCATAAGTGCAAGTTTTGAGTAACGAGGTTTGCAAC	CTGAATGGAGCTTCCCTCCCGCCCGACTGGGAAGT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	TGGTGGAAGGAGAAGGAGGGCGTATGCCTAAGCGGAA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CCCCAGGGGAGGGGAGGAGGCCAGGCAAAAGGTGCTCACC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGCCCCTAGGGCGATGTCCCCGGTGGGGCTGGAGAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CTGGGCCAGAGCCACCGAACCAAAAAGAGCCAAAAC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GAGAGGAGGGCGGTCATGGGGCCGGAGAGGATCTCCAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CTAGGTCCACGTAGAGCCTCGGGGAGAGGGGAGGCT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	AAGGGGGTCCGCTCTGTTGCCCACCTCGCAGGGGAACT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGTGCAGATTTTGCACGGGGGGGGTGCAGATTTTG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	AACACAGCGCTACTGCGACCTTCTACCCCTACAGCGC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GAAGGAGGGAGTATGCCGAAGAACCTGACGCCGCAA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CCGAGGGGACCTGGAGACGCTCCTCGCCCTGATGGAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGAAGTACGCTCGCCCCCAGCGCCCCTCGGCCACGTA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CGGCAGCCCAGGTGGTCAACGCCATCGGGAGCACCTA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	TGTCCCCCGTCTGGGTGATGGGCTGAGTGTCCTCCAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGGCAAGGGGGGAGAGGGCCTTCCTCCCCCCCTAGTTG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGAGGTCCTGCTCGTCTGCAGGTTTCAGCTCAGGCATC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC

>NZ_AP019802|1|1|40118-41322|PILER-CR
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	TGGTGGAAGGAGAAGGAGGGCGTATGCCTAAGCGGAA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CCCCAGGGGAGGGGAGGAGGCCAGGCAAAAGGTGCTCACC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGCCCCTAGGGCGATGTCCCCGGTGGGGCTGGAGAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CTGGGCCAGAGCCACCGAACCAAAAAGAGCCAAAAC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GAGAGGAGGGCGGTCATGGGGCCGGAGAGGATCTCCAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CTAGGTCCACGTAGAGCCTCGGGGAGAGGGGAGGCT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	AAGGGGGTCCGCTCTGTTGCCCACCTCGCAGGGGAACT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGTGCAGATTTTGCACGGGGGGGGTGCAGATTTTG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	AACACAGCGCTACTGCGACCTTCTACCCCTACAGCGC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GAAGGAGGGAGTATGCCGAAGAACCTGACGCCGCAA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CCGAGGGGACCTGGAGACGCTCCTCGCCCTGATGGAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGAAGTACGCTCGCCCCCAGCGCCCCTCGGCCACGTA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CGGCAGCCCAGGTGGTCAACGCCATCGGGAGCACCTA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	TGTCCCCCGTCTGGGTGATGGGCTGAGTGTCCTCCAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGGCAAGGGGGGAGAGGGCCTTCCTCCCCCCCTAGTTG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGAGGTCCTGCTCGTCTGCAGGTTTCAGCTCAGGCATC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC

>NZ_AP019802|1|1|40118-41322|CRISPRCasFinder
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	TGGTGGAAGGAGAAGGAGGGCGTATGCCTAAGCGGAA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CCCCAGGGGAGGGGAGGAGGCCAGGCAAAAGGTGCTCACC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGCCCCTAGGGCGATGTCCCCGGTGGGGCTGGAGAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CTGGGCCAGAGCCACCGAACCAAAAAGAGCCAAAAC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GAGAGGAGGGCGGTCATGGGGCCGGAGAGGATCTCCAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CTAGGTCCACGTAGAGCCTCGGGGAGAGGGGAGGCT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	AAGGGGGTCCGCTCTGTTGCCCACCTCGCAGGGGAACT
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGTGCAGATTTTGCACGGGGGGGGTGCAGATTTTG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	AACACAGCGCTACTGCGACCTTCTACCCCTACAGCGC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GAAGGAGGGAGTATGCCGAAGAACCTGACGCCGCAA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CCGAGGGGACCTGGAGACGCTCCTCGCCCTGATGGAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGAAGTACGCTCGCCCCCAGCGCCCCTCGGCCACGTA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	CGGCAGCCCAGGTGGTCAACGCCATCGGGAGCACCTA
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	TGTCCCCCGTCTGGGTGATGGGCTGAGTGTCCTCCAG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGGCAAGGGGGGAGAGGGCCTTCCTCCCCCCCTAGTTG
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	GGAGGTCCTGCTCGTCTGCAGGTTTCAGCTCAGGCATC
GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019802.1\|WP_143591865.1\|28316_29279_-\|recombinase-XerD	unknown	unknown	gnl\|CDD\|227308
NZ_AP019802.1\|WP_143591869.1\|34326_35346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019802.1\|WP_024119818.1\|30755_31769_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019802.1\|WP_143591867.1\|31874_32450_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019802.1\|WP_143591874.1\|47823_48738_+\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_AP019802.1\|WP_143591873.1\|44761_47062_+\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl\|CDD\|235175
NZ_AP019802.1\|WP_011174371.1\|41561_41846_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_AP019802.1\|WP_143591872.1\|43550_44744_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_AP019802.1\|WP_143591875.1\|48704_51158_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NZ_AP019802.1\|WP_143591870.1\|35373_36048_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_AP019802.1\|WP_143591876.1\|51157_51952_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_AP019802.1\|WP_011228296.1\|53684_54638_-\|IS110-like-element-IS1000B-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_AP019802.1\|WP_038039435.1\|32452_32650_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019802.1\|WP_143591868.1\|32660_34250_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293818
NZ_AP019802.1\|WP_143590208.1\|38874_39975_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NZ_AP019802.1\|WP_011174369.1\|42810_43395_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_AP019802.1\|WP_143591866.1\|29727_30759_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019802.1\|WP_143591877.1\|54895_55216_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NZ_AP019802.1\|WP_172967314.1\|41842_42820_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_AP019802.1\|WP_143590208.1\|36084_37185_+\|transposase	unknown	unknown	gnl\|CDD\|379252

Protein	Function_ID	Function_description	E-value
NZ_AP019802.1\|WP_143591865.1\|28316_29279_-\|recombinase-XerD	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	3.16431e-07
NZ_AP019802.1\|WP_143590208.1\|36084_37185_+\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	0.000969931
NZ_AP019802.1\|WP_143591877.1\|54895_55216_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	1.0525e-30
NZ_AP019802.1\|WP_143591873.1\|44761_47062_+\|hypothetical-protein	gnl\|CDD\|235175	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50.	1.42668e-06
NZ_AP019802.1\|WP_011174371.1\|41561_41846_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.78454e-25
NZ_AP019802.1\|WP_143591872.1\|43550_44744_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.26291e-42
NZ_AP019802.1\|WP_143591870.1\|35373_36048_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	4.65985e-16
NZ_AP019802.1\|WP_143591876.1\|51157_51952_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.28234e-33
NZ_AP019802.1\|WP_011228296.1\|53684_54638_-\|IS110-like-element-IS1000B-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.28212e-29
NZ_AP019802.1\|WP_143591868.1\|32660_34250_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293818	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Includes functionally uncharacterized Enterococcus faecalis EF2904. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.35046e-48
NZ_AP019802.1\|WP_143590208.1\|38874_39975_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	0.000969931
NZ_AP019802.1\|WP_011174369.1\|42810_43395_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.57413e-35
NZ_AP019802.1\|WP_143591875.1\|48704_51158_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.17245e-43
NZ_AP019802.1\|WP_172967314.1\|41842_42820_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.74427e-114

>NZ_AP019802.1|WP_143590208.1|38874_39975_-|transposase
MNQAALSLLWTILALMPTPHLRESLKALLFLFLTGHGKARPQHSKTKSPSALSRFLNRYPWPTRALIRLVREEAQKALDRARRRKGPKPRLLVVLDLVTLEKRGHFPHLPLSFFHGKWGLHLVVLYLVYGDLRVPWAYRLWRGKGEKGLSLLALSLLASLPLWMRRTFRIRVAADAAFGTAWFLFGVKQMGFETVVGMRRDRRLRGGGRLLDLRRQGSRVYLWGLSFPVWVAWYRYPLPQGGWEWRYVVATFPATPRTMLTWGKRRFTVEHFFRAAKSEFSLGQFGQRTALGVHRFLVLSLLAYLLAHWVGVEGRGSWREAREGAARVLLPELVVQVILRELHALGLGPPGGGGEGLCGVCGRCKF
>NZ_AP019802.1|WP_143590208.1|36084_37185_+|transposase
MNQAALSLLWTILALMPTPHLRESLKALLFLFLTGHGKARPQHSKTKSPSALSRFLNRYPWPTRALIRLVREEAQKALDRARRRKGPKPRLLVVLDLVTLEKRGHFPHLPLSFFHGKWGLHLVVLYLVYGDLRVPWAYRLWRGKGEKGLSLLALSLLASLPLWMRRTFRIRVAADAAFGTAWFLFGVKQMGFETVVGMRRDRRLRGGGRLLDLRRQGSRVYLWGLSFPVWVAWYRYPLPQGGWEWRYVVATFPATPRTMLTWGKRRFTVEHFFRAAKSEFSLGQFGQRTALGVHRFLVLSLLAYLLAHWVGVEGRGSWREAREGAARVLLPELVVQVILRELHALGLGPPGGGGEGLCGVCGRCKF
>NZ_AP019802.1|WP_143591870.1|35373_36048_+|DUF262-domain-containing-protein
MPLTKGHTRLRLPDLLSRVSSHEFLIPEFQRDLVWKPEQVRELLVSLVRGDFAGVILLLEFNPTSPPFHHKAVYAVPSSPPPPLTHAYSVLDGQQRISALYYAFHHPNLPLPPKGKVVRFFLKLDPFLKGDFDEAVVVERNGSPGFKDLVDEWYRGEALPFGPISGPHPPHLITLYDLLMAPGPSAGSLLDAYLSGTSSPHAPSFGNSKLALMHPGDSYARGTT
>NZ_AP019802.1|WP_143591869.1|34326_35346_+|hypothetical-protein
MGRDIPITVHNLGSPEGKGLNFAREELYRRMDAPMMALAVRIPVYLVNEAQMDRLYPPERRRFFPEEPLRRRLRELRERDPWDDEDPFAPLEDLDRWGEDLRNWNRVKDVVAVGLYVRGSAMGAQGRDFRQEVLRLGEEEARTEGAEEAFLDHEGPVIFLCPERVVGWAEEKGVRVALVQDKVYYHELGHALMDTADPYPDPYGESWGRVVEESLANLVAWRRFRGQEAAWVARLIQDQPPEYRGYAAAAALPHPLFWPEIAHLRVPWEYWEEWWWRYRHFLRGIPGRLRTFLELPFSPDGGSGLYRAWRESKRRGLWREPATQRFWRGVARLLLEESV
>NZ_AP019802.1|WP_143591868.1|32660_34250_+|MBL-fold-metallo-hydrolase
MRRVDLGRLSVWLFGGLGEIGGNQVLLYTEEGGLLLDFGRPFGRWGAFFTEFLSPRTSGLGLRDLLFLRLLPPVPGLYRDGTGDTLLPTELERELLGGLPLDGGKVLALLLSHAHLDHTGSVGYLRQDLPVVTTAATAAIVKAMQDTAQAGVDGEAAYLSPRLPKGDTGLLEGDRKRYLRRPYRLWGRLRAFPHRSPAVQKTLEGHPWEEASSPLALGPFRVEALPVDHSVPGAAAFAVETPEGLVVYTGDLRRHGRWGAKTEAFLRALEGREVFLLLVEGTRLGEPGRARTEEEVKQALHAEVARWEGAPVVVDFAPRNLERLLSCLEVAREVGRRLVVTAKDAYLLWGLAEAEPDPWERVLGEVLVLKEDKNRTSGWERALWDEAPVQGVSPEEVAQDLGSYLLALGFYEVNRLLDLRLLERKAGRVPRRGAYIFSNSYWADQEQILDLEVLLRWLEALDLRLLPEDLAALPQDPQGVRNPFHTSGHAPEADLREVAERLRPRYLLPIHTERPERWREVYEGEVLLP
>NZ_AP019802.1|WP_038039435.1|32452_32650_+|hypothetical-protein
MAIASVRRRGNYLDVYDERGRRIGGFGISTQDELLGWTADTVIVRRGRTVYHYDARGRVKGTRPA
>NZ_AP019802.1|WP_143591867.1|31874_32450_+|hypothetical-protein
MEGRGAGGKVGRAALVLLFAALATGAAPWTEGPGPFRVRTLVDEIDAGGWLHDMAYGAGVFVVVGPFRILVSKDGVRWKKVHAPARMNAVEYTEVGFLAVGNAGTLMASKDGWDWKRYKVGQDLEWDLFGVAYGGGWYFVEANEGVILASRNLRDWVELLRDEDMTGMVYGNGRLVVGSLWKLHVVEPERR
>NZ_AP019802.1|WP_024119818.1|30755_31769_-|hypothetical-protein
MGETSSEVRTEGGRPGRPPGLLGLAALKELPRLDADLLRELGLHKDKVLRQGLKLLLLALEAHRLGADLRWNTGEVLKEGLLEFLREEENARRLLTALAREERAFLGLADGASAGDLREVVEELYLRDHPRGVVQKLLRKLGPLLATLAPTRLGDLPLDRVPETWAAATPLVGAFRGVFLLLERSYGLDSAAFEQAMAASWVFHFLKEPTGTGDPCSCPFGNVHPYLEAKKVRRGTQVLLYRDGAPAGCTCQVARNQPTGKRELYEASRLNDKGPRVPSPALVKHFPAWYEALAKAWKGGDPEPCPFPEGGYDWDLVAEYRHALWAALASSPHGGKP
>NZ_AP019802.1|WP_143591866.1|29727_30759_-|hypothetical-protein
MTRPRRSFQSLLLQALVEAEAGNLGALQAEAFREEARRHLAMGPRGEDPIGQALYLGREALYRLSLGDREEACAKLLQALRLHPYLGGGYAARLVEVLCGERTVEEGSRRGDRALLEEARPEVRLLAFLDGLPPAFWVEAFWPKGEGRAQAEKQGPQAARGEQPSFTRPERRPPSPSRPRLVLAYRPLPREKPPEGEKTIIMRAFLIQDSARFPTPRPQLRRWVAPGGLLEVREGEGELWVRLSGKLWEAYPRAALLVLKGGEQRVLVPLIFGLRTQLLPVAFQEGEDLLGEVWLWEDLTLEALRRLLQETHFHPDVLAAWLIWGLAEGWLDAETLRALLKPE
>NZ_AP019802.1|WP_143591865.1|28316_29279_-|recombinase-XerD
MREGLGLEVWDHPEERRRVVGEALARWDEGALKEALWAYLVRHRKKPDRAAPHYVGYFVRWLALKGRRWPHLEPEDPKAFLLEAKERGFPGGERGPLSWGTVERARASLRHLFPFLDWAGHPMPSHVRLPSRQELPVVAPSRAMPEEAYQDLLEKAGAYPLAYWRPLLRVLLVLLGEVGLTVKEAVELWQEDVREKVLLVRGAKLREVPLSPLAREVLADWLPQRAFLASHQPLPYPHLLLKPAPGKNRGKPLGLEEAKWILAEFVDFAGVKPQGKRRADLALPLRWRAIRRFLKEGHPREKVAYWTGMKSLVVPGWGEE
>NZ_AP019802.1|WP_011174371.1|41561_41846_-|CRISPR-associated-endonuclease-Cas2
MRELYLVIAYDTPDDRRRARLAKLLKGFGERRQYSVFEARLTREQWAHLKGKLEALVNKEEDVLAVYFLPPEAVGRTWRIGHEGLKRLEDPDFV
>NZ_AP019802.1|WP_172967314.1|41842_42820_-|CRISPR-associated-endonuclease-Cas1
MGVVYVLENEAYLSKEGGTLKVSRRAGREVLLQKPLIAVEEIVILGNAVVTPALLKHCAQEGVGIHYLSPTGTYYAGLTRTPSKNAPARVAQFKAYLEPTWKLALAQRFVLGKIRNGLVFLRRNGAEGWERLKEALLEAERAQDEEALRGAEGRAADLYFRAFAELLPEEFAFGERSRRPPRDPANSLLSLAYTLLAKECESALLVAGLDPYVGYLHEVRYGRPSLALDLMEEFRSVLADSVVLSLLNNRRVTLEDFDDSEGFPRLRKEAWPKFLRAWEERLNERIQHPLLGKRLVYREILLAQARILVKHLLGELPRYEPFAVR
>NZ_AP019802.1|WP_011174369.1|42810_43395_-|CRISPR-associated-protein-Cas4
MGHGGAVEYLPLSKVNTVVYCPRRFYLEYVLGEAHANHHLIEGHYLHERAYTEPGEESGLWVWSDRLGLLGVVDRLEWRRGEACPVEYKLGRAKEEAYLSDAVQLAAQALCLRESRGIKARRGFVYYHKSHTRREVVFTPELFRAVEAAVVRMRALLQSPRPPRVEVPPSKCEGCSVQGACQPELWRKGVAGWA
>NZ_AP019802.1|WP_143591872.1|43550_44744_+|WYL-domain-containing-protein
MVGTTPAAPGKVWPRTGAIPFPLSDPPSKLGLFPWNRGPWSKRRRRFWRKGGKPGGLWGKEGFVVEWAQSMESRLPDFLRLLRESPKGLPVREIAARLGVRRQSVYRLRDKAQSLGVWVETHGENPEVPPGWMRLEAPLEVTVRLTLEEAEALRAAVERMEPLTPLAKRALERLALRTLAAPGKDRQDPVVYTPLADEYPPGLFERAVRAIRERRTCQVTYKNAKGEVKTYRFDPYALIARDPHLYLVGANHNSRRAGHDPVKDLRLDQILDLRLTRERFRKPRFDVRAYAQRRFRAFAGEGAPVRVRVRFSPEKAGFIRRTRRHPTQVVEDLPDGSVVWQVEVPLSEDLVHFILGYGPHATVLEPEELRRRVVAWAKGAVAANEGVLSPEGVTGLD
>NZ_AP019802.1|WP_143591873.1|44761_47062_+|hypothetical-protein
MERVMVQASTVARAKRLVADVRFGEAPREALLAYKEALDEPEFAAFLERIDPRIVRYLRVAPGGSQALSDPKGKDLLLYLHPLPGERQMRAAYEVAIEGFLEHLEAKGYPVVERGAGWVKAYVSPKAPSLDLEGAWKAYIEEAFSLEGLSARLLPLLNSVRLAGRGISAPKVPVPTLGARDFLAAWYLANLLSVKERLAWRDQEIRRLEEEASRLPEGSEKSRKLRELEKRRQDQEKELKKYGGELRKKWEEIVREEEKRAEKRRKLEERLQRAKPKDRPRLENELLALESPLAEWALEGLEKAKDDPGRLWTWLDPESPEAPGAIQRLKPYLGRFGPLAKEQLNTAVGNKFTKILEELLRLLSLSSPEVEVPPLVSETPFTLDLRDPGDKADVCYGCGRPLGKDKLKASKLVFASPSQRLQSGNGQEEPWVCPSCAALALLSPIKPGEGSVLVQVGSYGAPEAAKHFARLLVTGTLHVAAGRYLLLNSPQVRGKPLAQALGRVVYALQALGQEVNPKVLERFPFYLVEGAQEIPLPPRALWLSHVLQRAFASRPDEGGEVNRPLGEALRYALGDLPWHALYTLARRYGRVADRFSLEDGLLRYASLLEKEVGMKENTDLSQRFRDVAGLTGLLSAWVGYVEGQVGRNSQEAKRAVVKLLDNLERPGDFLYVAAYHLDSTQARLYEAGGAFFYQEAKRLLQEAGARAQEAEEGSGRFLTVSQDDLHRVYAHLAARYPGKAWEGFIYEVRLSLASRFPQYIRMEKEG
>NZ_AP019802.1|WP_143591874.1|47823_48738_+|hypothetical-protein
MPPKEKRFSSATGGGRPWRRFGGWPRLLWRRTFRLWLPLPNMYAIALRIRPTSALTFRVLPGSILDIATYPFVPPTTLSGWLRRLFWAQEGLLPPDQREGNTPRFYVLPRRYLPLGAYPVGEWRVHRTHRHGPRAFTHSEFSRLRREGKPPKGGDLQLHTWEYLLAEEFLGAVLAEKEEDLRRLQGLVGYGAKLGKEGFAYLEAVGEPLEVRLEEGDAPFTPVRAEAWGGAIQGAYPLYRFRFGEAEDPDPASPDPSPVMGYEGAYFVLPRGRGLAKGFSLEGRFFAWDLVEFLWARASGGSSS
>NZ_AP019802.1|WP_143591875.1|48704_51158_+|CRISPR-associated-helicase-Cas3'
MGEGIGRVFFLKDEVGFQPLSNHQGLVVKLLESWREGDEPLALSPKTKERLLLAARYHDDGKRFTFHIVPDGKGGLTYSFRGHRFRVAQAVQDPYAQALVRGHHDYSTREVVNLAADFLEEGLGHRFPEDLFLLMMADQLEAELAVRLWQGRAGEVRPFVEFDLLPDGEGGFLLDPWPFRVDEVALDFLVYFHPYRGEEAKVVEGWGRALVGALEEGKVPEAFREEKRRVRLRPWAAGARKADDPEAFYDRFGLKPTPFQREVFKVAEGDPAHLLLAPTGTGKTEAAAFPALARGERLVFVLPTRSLVDDLEGRFRRYLKILAQEEGRPKALVVDTGHRQARFRFSPDGQEEATKERHLYHADVILTTLDKLLYRYFGYAEGVKSYTFPRRIHDRRTLFVFDEVHLYEATAWVNFRHLIASLYKAGVRFLVMSATMPGTYREELLLEGTLEHPAAKRPSRVLRYMPQGNPMEIIQSHRGKRVLVVLEEVKEAAELYKRLKGEGVFLYHGRLAEGQRRRVFRKVKRRDKAQKPYLLITTPAIEVGVDLDAEVLVTTLCPPENLLQRLGRVNRRGGGQGKAYVVGETYPDYLGSLPEGYLELLKALDGQDLAQGGEERLRQAIRYPKYLDPRAETFFEALQDYVYGLDLTQEPLHRKGFVATRGWTPSVRLRQGEDEVEVPIDRLVGRKEELTPVRVVERLLTDGETGNRRREEVPLRSGELYGRELVLDYPYPYDAELGFVELPKVFQRLRHPDPQRVQLLYAPEKDAGEAPEGVMDTDQVAGGGRRVLWYLGESAWAEPAKSGEVAEETEEEEEEGD
>NZ_AP019802.1|WP_143591876.1|51157_51952_+|CRISPR-associated-endoribonuclease-Cas6
MPQAVVLELVGEKPPLYPARYAHGLFFALLSRVSPELAQKLHEAPRKPFTLAPLPRAGPEGATLKGTLRLRLTTLDDGLFASFLRALLEAAPDGLPLGDSSYRLARVLATREGHPLAGATSWEELKEAPKREKATFRFLTPTVFATSKPGGRTRYTPLPDPRLIAGSLLDKWQAHSPFPYNPKEEAALRELFELDLEVAGFRNLRFHRVQAGKGFFPGFTGEATLRLWSQSLEAQEALGRLHALAFFSGVGAKTPYGMGLAVPL
>NZ_AP019802.1|WP_011228296.1|53684_54638_-|IS110-like-element-IS1000B-family-transposase
MTFAGIDVSKTHLDLALVSNSPKPTRLRFPNSPEGRQALLAALAHHNPAWVALEPTSAYHLPLLKLLAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHEDLRAYTLPPETLRELKALVGYREDLAGRERTILNQMEAAEWAGSKEVLALLQKELACVKGLLGEVEARIQALLATLPEAEVLMALPGVGPQVAAAVLALLPPELWGRAKRAASYAGLIPEREESGKSVERSRLSKKGPPLLRRKLYMGALVAVRHDPEMRAFYHRLLSRGKRKKQALVAVAHKLLRRMMGRLREYYATQLDQGVA
>NZ_AP019802.1|WP_143591877.1|54895_55216_+|antibiotic-biosynthesis-monooxygenase
MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKDPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGTLPKEAFLGPSRLEAFEVVLDSEGRDG

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Crispr_ID: NZ_AP019802_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019802_2

52192-53673

Unclear

Consensus_repeat	Method
GTTTCAATCCTCTACGAGGCTGACGGGGTTTGCAAC	PILER-CR
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CRISPRCasFinder
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CRT

20 spacers

cas6,cas3,cas5,cas8b5,WYL,cas4,cas1,cas2

The CRISPR arrays of NZ_AP019802_2

>merge|NZ_AP019802|2|52192-53673|PILER-CR,CRISPRCasFinder,CRT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACCTGGACCTGCACCGTGGTGCGGCGGGACAAGGCCATGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACGTAGTGCTCCTCCAGAGTGGAGCCATCTGGCCGCTCCAGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACGTGGTAGAGATCCGCTCCGTGTCTGGCCGCCGGGTCCGGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACGGCGATTATCGCGGCGGTGGTGCTCGCCCTCACCGCGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTTGGCCCTCCTCACGGGGGCATACGCCTACACCGTGGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACATAATCCAGTCCGGCACGGGCGGAAGCCCGGTCTCGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTTCTCCAGGCTCTCCACGCGGAGGGCCCCCAGCCCGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTAGCCAAACCCGCCGTTGCCGTCCGTCCTCGCCACCTGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTTGAGATGGGTGAGGCATGCGCTATTTGCCTGCTGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACCAGGACCTTGGGACAGAGGCTCTTGGCGCCGCCAGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACAGGTGGGGGCGCTCCTTATCGGAGAGGGGCGCCTCGAGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACAGGGCATGGAGCTTCGCCCCGACCCTCTGCACTATTTGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTGCTCCTTGTAGGCGCCCTGGTACTTCCGCCGGGCCAGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTGATAGGCGCGCCCCACCTGCCGCAGCAACCTACGCGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACCCCGAGGTTCCGGGGGGCACCAGGCTGCCGTCCGGCAGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTCAAAGGGTCCCTCTATTACCCTGGCGTGGAAGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACTGAGGAGGGTCGTCTTCCCCGTGCGGGGCGGTCCCAGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACAAGGTGGGCGAGTTCGTGGTGCCCTCGGGGGCCACGGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACAGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCCGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAACGGCTTGGGAAGCCCCTCAGCCAGCTCGTCCACCAGCGTTGCAAACCCCGTCAGCCTCGTAGAGGATTGATAC

>NZ_AP019802|2|2|52192-53601|PILER-CR
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CTGGACCTGCACCGTGGTGCGGCGGGACAAGGCCAT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GTAGTGCTCCTCCAGAGTGGAGCCATCTGGCCGCTCCAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GTGGTAGAGATCCGCTCCGTGTCTGGCCGCCGGGTCCGG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GGCGATTATCGCGGCGGTGGTGCTCGCCCTCACCGC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTGGCCCTCCTCACGGGGGCATACGCCTACACCGTGG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	ATAATCCAGTCCGGCACGGGCGGAAGCCCGGTCTC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTCTCCAGGCTCTCCACGCGGAGGGCCCCCAGCCC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TAGCCAAACCCGCCGTTGCCGTCCGTCCTCGCCACCT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTGAGATGGGTGAGGCATGCGCTATTTGCCTGCT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CAGGACCTTGGGACAGAGGCTCTTGGCGCCGCCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGGTGGGGGCGCTCCTTATCGGAGAGGGGCGCCTCGAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGGGCATGGAGCTTCGCCCCGACCCTCTGCACTATTTG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGCTCCTTGTAGGCGCCCTGGTACTTCCGCCGGGCCAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGATAGGCGCGCCCCACCTGCCGCAGCAACCTACGCG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CCCGAGGTTCCGGGGGGCACCAGGCTGCCGTCCGGCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TCAAAGGGTCCCTCTATTACCCTGGCGTGGAA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGAGGAGGGTCGTCTTCCCCGTGCGGGGCGGTCCCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AAGGTGGGCGAGTTCGTGGTGCCCTCGGGGGCCACG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC

>NZ_AP019802|2|2|52192-53673|CRISPRCasFinder
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CTGGACCTGCACCGTGGTGCGGCGGGACAAGGCCAT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GTAGTGCTCCTCCAGAGTGGAGCCATCTGGCCGCTCCAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GTGGTAGAGATCCGCTCCGTGTCTGGCCGCCGGGTCCGG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GGCGATTATCGCGGCGGTGGTGCTCGCCCTCACCGC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTGGCCCTCCTCACGGGGGCATACGCCTACACCGTGG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	ATAATCCAGTCCGGCACGGGCGGAAGCCCGGTCTC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTCTCCAGGCTCTCCACGCGGAGGGCCCCCAGCCC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TAGCCAAACCCGCCGTTGCCGTCCGTCCTCGCCACCT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTGAGATGGGTGAGGCATGCGCTATTTGCCTGCT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CAGGACCTTGGGACAGAGGCTCTTGGCGCCGCCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGGTGGGGGCGCTCCTTATCGGAGAGGGGCGCCTCGAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGGGCATGGAGCTTCGCCCCGACCCTCTGCACTATTTG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGCTCCTTGTAGGCGCCCTGGTACTTCCGCCGGGCCAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGATAGGCGCGCCCCACCTGCCGCAGCAACCTACGCG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CCCGAGGTTCCGGGGGGCACCAGGCTGCCGTCCGGCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TCAAAGGGTCCCTCTATTACCCTGGCGTGGAA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGAGGAGGGTCGTCTTCCCCGTGCGGGGCGGTCCCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AAGGTGGGCGAGTTCGTGGTGCCCTCGGGGGCCACG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GGCTTGGGAAGCCCCTCAGCCAGCTCGTCCACCAGC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGATAC

>NZ_AP019802|2|2|52192-53673|CRT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CTGGACCTGCACCGTGGTGCGGCGGGACAAGGCCAT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GTAGTGCTCCTCCAGAGTGGAGCCATCTGGCCGCTCCAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GTGGTAGAGATCCGCTCCGTGTCTGGCCGCCGGGTCCGG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GGCGATTATCGCGGCGGTGGTGCTCGCCCTCACCGC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTGGCCCTCCTCACGGGGGCATACGCCTACACCGTGG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	ATAATCCAGTCCGGCACGGGCGGAAGCCCGGTCTC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTCTCCAGGCTCTCCACGCGGAGGGCCCCCAGCCC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TAGCCAAACCCGCCGTTGCCGTCCGTCCTCGCCACCT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TTGAGATGGGTGAGGCATGCGCTATTTGCCTGCT
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CAGGACCTTGGGACAGAGGCTCTTGGCGCCGCCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGGTGGGGGCGCTCCTTATCGGAGAGGGGCGCCTCGAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGGGCATGGAGCTTCGCCCCGACCCTCTGCACTATTTG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGCTCCTTGTAGGCGCCCTGGTACTTCCGCCGGGCCAG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGATAGGCGCGCCCCACCTGCCGCAGCAACCTACGCG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	CCCGAGGTTCCGGGGGGCACCAGGCTGCCGTCCGGCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TCAAAGGGTCCCTCTATTACCCTGGCGTGGAA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	TGAGGAGGGTCGTCTTCCCCGTGCGGGGCGGTCCCA
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AAGGTGGGCGAGTTCGTGGTGCCCTCGGGGGCCACG
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	AGCCGATACCCCTCTCTCCAGTCCAGGGGGGCCTCC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC	GGCTTGGGAAGCCCCTCAGCCAGCTCGTCCACCAGC
GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019802.1\|WP_143591880.1\|59858_60905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271141
NZ_AP019802.1\|WP_143591874.1\|47823_48738_+\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_AP019802.1\|WP_011229089.1\|58621_58936_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019802.1\|WP_143591879.1\|55825_56731_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238569
NZ_AP019802.1\|WP_143590208.1\|36084_37185_+\|transposase	unknown	unknown	gnl\|CDD\|379252
NZ_AP019802.1\|WP_143591877.1\|54895_55216_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NZ_AP019802.1\|WP_011229087.1\|56834_57860_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
NZ_AP019802.1\|WP_143591873.1\|44761_47062_+\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl\|CDD\|235175
NZ_AP019802.1\|WP_011174371.1\|41561_41846_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_AP019802.1\|WP_143591872.1\|43550_44744_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_AP019802.1\|WP_143591878.1\|55208_55829_+\|DUF3386-family-protein	unknown	unknown	gnl\|CDD\|371771
NZ_AP019802.1\|WP_172967314.1\|41842_42820_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_AP019802.1\|WP_024118782.1\|57852_58632_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_AP019802.1\|WP_011228296.1\|53684_54638_-\|IS110-like-element-IS1000B-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_AP019802.1\|WP_143591881.1\|60952_62137_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NZ_AP019802.1\|WP_024118783.1\|58947_59862_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_AP019802.1\|WP_143590208.1\|38874_39975_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NZ_AP019802.1\|WP_011174369.1\|42810_43395_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_AP019802.1\|WP_143591875.1\|48704_51158_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NZ_AP019802.1\|WP_143591876.1\|51157_51952_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848

Protein	Function_ID	Function_description	E-value
NZ_AP019802.1\|WP_011229087.1\|56834_57860_+\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.48972e-78
NZ_AP019802.1\|WP_143591880.1\|59858_60905_+\|hypothetical-protein	gnl\|CDD\|271141	cd14658, Imelysin-like_IrpA, Imelysin-like domain in iron-regulated protein A. This family includes putative iron-regulated protein A (IrpA) mainly from Bacteriodes, proteobacteria and cyanobacteria, with domain similar to insulin-cleaving membrane protease (imelysin, ICMP) protein. It has been shown to be essential for growth under iron-deficient conditions in the cyanobacteria Synechococcus sp. The conserved GxHxxE motif is similar to other known imelysin-like proteins that are regulated by iron, such as ICMP, IrpA and EfeO. Imelysin is a membrane protein with the active site outside the cell envelope. The tertiary structure shows a fold consisting of two domains, each of which consists of a bundle of four helices that are similar to each other, implying an ancient gene duplication and fusion event.	1.46596e-53
NZ_AP019802.1\|WP_143591879.1\|55825_56731_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238569	cd01149, HutB, Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	3.55234e-83
NZ_AP019802.1\|WP_143590208.1\|36084_37185_+\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	0.000969931
NZ_AP019802.1\|WP_143591877.1\|54895_55216_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	1.0525e-30
NZ_AP019802.1\|WP_143591873.1\|44761_47062_+\|hypothetical-protein	gnl\|CDD\|235175	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50.	1.42668e-06
NZ_AP019802.1\|WP_011174371.1\|41561_41846_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.78454e-25
NZ_AP019802.1\|WP_143591872.1\|43550_44744_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.26291e-42
NZ_AP019802.1\|WP_143591878.1\|55208_55829_+\|DUF3386-family-protein	gnl\|CDD\|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	3.28367e-20
NZ_AP019802.1\|WP_172967314.1\|41842_42820_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.74427e-114
NZ_AP019802.1\|WP_024118782.1\|57852_58632_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	8.13046e-88
NZ_AP019802.1\|WP_011228296.1\|53684_54638_-\|IS110-like-element-IS1000B-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.28212e-29
NZ_AP019802.1\|WP_143591881.1\|60952_62137_+\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	3.71724e-117
NZ_AP019802.1\|WP_024118783.1\|58947_59862_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	5.70611e-55
NZ_AP019802.1\|WP_143590208.1\|38874_39975_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	0.000969931
NZ_AP019802.1\|WP_011174369.1\|42810_43395_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.57413e-35
NZ_AP019802.1\|WP_143591875.1\|48704_51158_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.17245e-43
NZ_AP019802.1\|WP_143591876.1\|51157_51952_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.28234e-33

>NZ_AP019802.1|WP_143591876.1|51157_51952_+|CRISPR-associated-endoribonuclease-Cas6
MPQAVVLELVGEKPPLYPARYAHGLFFALLSRVSPELAQKLHEAPRKPFTLAPLPRAGPEGATLKGTLRLRLTTLDDGLFASFLRALLEAAPDGLPLGDSSYRLARVLATREGHPLAGATSWEELKEAPKREKATFRFLTPTVFATSKPGGRTRYTPLPDPRLIAGSLLDKWQAHSPFPYNPKEEAALRELFELDLEVAGFRNLRFHRVQAGKGFFPGFTGEATLRLWSQSLEAQEALGRLHALAFFSGVGAKTPYGMGLAVPL
>NZ_AP019802.1|WP_143591875.1|48704_51158_+|CRISPR-associated-helicase-Cas3'
MGEGIGRVFFLKDEVGFQPLSNHQGLVVKLLESWREGDEPLALSPKTKERLLLAARYHDDGKRFTFHIVPDGKGGLTYSFRGHRFRVAQAVQDPYAQALVRGHHDYSTREVVNLAADFLEEGLGHRFPEDLFLLMMADQLEAELAVRLWQGRAGEVRPFVEFDLLPDGEGGFLLDPWPFRVDEVALDFLVYFHPYRGEEAKVVEGWGRALVGALEEGKVPEAFREEKRRVRLRPWAAGARKADDPEAFYDRFGLKPTPFQREVFKVAEGDPAHLLLAPTGTGKTEAAAFPALARGERLVFVLPTRSLVDDLEGRFRRYLKILAQEEGRPKALVVDTGHRQARFRFSPDGQEEATKERHLYHADVILTTLDKLLYRYFGYAEGVKSYTFPRRIHDRRTLFVFDEVHLYEATAWVNFRHLIASLYKAGVRFLVMSATMPGTYREELLLEGTLEHPAAKRPSRVLRYMPQGNPMEIIQSHRGKRVLVVLEEVKEAAELYKRLKGEGVFLYHGRLAEGQRRRVFRKVKRRDKAQKPYLLITTPAIEVGVDLDAEVLVTTLCPPENLLQRLGRVNRRGGGQGKAYVVGETYPDYLGSLPEGYLELLKALDGQDLAQGGEERLRQAIRYPKYLDPRAETFFEALQDYVYGLDLTQEPLHRKGFVATRGWTPSVRLRQGEDEVEVPIDRLVGRKEELTPVRVVERLLTDGETGNRRREEVPLRSGELYGRELVLDYPYPYDAELGFVELPKVFQRLRHPDPQRVQLLYAPEKDAGEAPEGVMDTDQVAGGGRRVLWYLGESAWAEPAKSGEVAEETEEEEEEGD
>NZ_AP019802.1|WP_143591874.1|47823_48738_+|hypothetical-protein
MPPKEKRFSSATGGGRPWRRFGGWPRLLWRRTFRLWLPLPNMYAIALRIRPTSALTFRVLPGSILDIATYPFVPPTTLSGWLRRLFWAQEGLLPPDQREGNTPRFYVLPRRYLPLGAYPVGEWRVHRTHRHGPRAFTHSEFSRLRREGKPPKGGDLQLHTWEYLLAEEFLGAVLAEKEEDLRRLQGLVGYGAKLGKEGFAYLEAVGEPLEVRLEEGDAPFTPVRAEAWGGAIQGAYPLYRFRFGEAEDPDPASPDPSPVMGYEGAYFVLPRGRGLAKGFSLEGRFFAWDLVEFLWARASGGSSS
>NZ_AP019802.1|WP_143591873.1|44761_47062_+|hypothetical-protein
MERVMVQASTVARAKRLVADVRFGEAPREALLAYKEALDEPEFAAFLERIDPRIVRYLRVAPGGSQALSDPKGKDLLLYLHPLPGERQMRAAYEVAIEGFLEHLEAKGYPVVERGAGWVKAYVSPKAPSLDLEGAWKAYIEEAFSLEGLSARLLPLLNSVRLAGRGISAPKVPVPTLGARDFLAAWYLANLLSVKERLAWRDQEIRRLEEEASRLPEGSEKSRKLRELEKRRQDQEKELKKYGGELRKKWEEIVREEEKRAEKRRKLEERLQRAKPKDRPRLENELLALESPLAEWALEGLEKAKDDPGRLWTWLDPESPEAPGAIQRLKPYLGRFGPLAKEQLNTAVGNKFTKILEELLRLLSLSSPEVEVPPLVSETPFTLDLRDPGDKADVCYGCGRPLGKDKLKASKLVFASPSQRLQSGNGQEEPWVCPSCAALALLSPIKPGEGSVLVQVGSYGAPEAAKHFARLLVTGTLHVAAGRYLLLNSPQVRGKPLAQALGRVVYALQALGQEVNPKVLERFPFYLVEGAQEIPLPPRALWLSHVLQRAFASRPDEGGEVNRPLGEALRYALGDLPWHALYTLARRYGRVADRFSLEDGLLRYASLLEKEVGMKENTDLSQRFRDVAGLTGLLSAWVGYVEGQVGRNSQEAKRAVVKLLDNLERPGDFLYVAAYHLDSTQARLYEAGGAFFYQEAKRLLQEAGARAQEAEEGSGRFLTVSQDDLHRVYAHLAARYPGKAWEGFIYEVRLSLASRFPQYIRMEKEG
>NZ_AP019802.1|WP_143591872.1|43550_44744_+|WYL-domain-containing-protein
MVGTTPAAPGKVWPRTGAIPFPLSDPPSKLGLFPWNRGPWSKRRRRFWRKGGKPGGLWGKEGFVVEWAQSMESRLPDFLRLLRESPKGLPVREIAARLGVRRQSVYRLRDKAQSLGVWVETHGENPEVPPGWMRLEAPLEVTVRLTLEEAEALRAAVERMEPLTPLAKRALERLALRTLAAPGKDRQDPVVYTPLADEYPPGLFERAVRAIRERRTCQVTYKNAKGEVKTYRFDPYALIARDPHLYLVGANHNSRRAGHDPVKDLRLDQILDLRLTRERFRKPRFDVRAYAQRRFRAFAGEGAPVRVRVRFSPEKAGFIRRTRRHPTQVVEDLPDGSVVWQVEVPLSEDLVHFILGYGPHATVLEPEELRRRVVAWAKGAVAANEGVLSPEGVTGLD
>NZ_AP019802.1|WP_011174369.1|42810_43395_-|CRISPR-associated-protein-Cas4
MGHGGAVEYLPLSKVNTVVYCPRRFYLEYVLGEAHANHHLIEGHYLHERAYTEPGEESGLWVWSDRLGLLGVVDRLEWRRGEACPVEYKLGRAKEEAYLSDAVQLAAQALCLRESRGIKARRGFVYYHKSHTRREVVFTPELFRAVEAAVVRMRALLQSPRPPRVEVPPSKCEGCSVQGACQPELWRKGVAGWA
>NZ_AP019802.1|WP_172967314.1|41842_42820_-|CRISPR-associated-endonuclease-Cas1
MGVVYVLENEAYLSKEGGTLKVSRRAGREVLLQKPLIAVEEIVILGNAVVTPALLKHCAQEGVGIHYLSPTGTYYAGLTRTPSKNAPARVAQFKAYLEPTWKLALAQRFVLGKIRNGLVFLRRNGAEGWERLKEALLEAERAQDEEALRGAEGRAADLYFRAFAELLPEEFAFGERSRRPPRDPANSLLSLAYTLLAKECESALLVAGLDPYVGYLHEVRYGRPSLALDLMEEFRSVLADSVVLSLLNNRRVTLEDFDDSEGFPRLRKEAWPKFLRAWEERLNERIQHPLLGKRLVYREILLAQARILVKHLLGELPRYEPFAVR
>NZ_AP019802.1|WP_011174371.1|41561_41846_-|CRISPR-associated-endonuclease-Cas2
MRELYLVIAYDTPDDRRRARLAKLLKGFGERRQYSVFEARLTREQWAHLKGKLEALVNKEEDVLAVYFLPPEAVGRTWRIGHEGLKRLEDPDFV
>NZ_AP019802.1|WP_143590208.1|38874_39975_-|transposase
MNQAALSLLWTILALMPTPHLRESLKALLFLFLTGHGKARPQHSKTKSPSALSRFLNRYPWPTRALIRLVREEAQKALDRARRRKGPKPRLLVVLDLVTLEKRGHFPHLPLSFFHGKWGLHLVVLYLVYGDLRVPWAYRLWRGKGEKGLSLLALSLLASLPLWMRRTFRIRVAADAAFGTAWFLFGVKQMGFETVVGMRRDRRLRGGGRLLDLRRQGSRVYLWGLSFPVWVAWYRYPLPQGGWEWRYVVATFPATPRTMLTWGKRRFTVEHFFRAAKSEFSLGQFGQRTALGVHRFLVLSLLAYLLAHWVGVEGRGSWREAREGAARVLLPELVVQVILRELHALGLGPPGGGGEGLCGVCGRCKF
>NZ_AP019802.1|WP_143590208.1|36084_37185_+|transposase
MNQAALSLLWTILALMPTPHLRESLKALLFLFLTGHGKARPQHSKTKSPSALSRFLNRYPWPTRALIRLVREEAQKALDRARRRKGPKPRLLVVLDLVTLEKRGHFPHLPLSFFHGKWGLHLVVLYLVYGDLRVPWAYRLWRGKGEKGLSLLALSLLASLPLWMRRTFRIRVAADAAFGTAWFLFGVKQMGFETVVGMRRDRRLRGGGRLLDLRRQGSRVYLWGLSFPVWVAWYRYPLPQGGWEWRYVVATFPATPRTMLTWGKRRFTVEHFFRAAKSEFSLGQFGQRTALGVHRFLVLSLLAYLLAHWVGVEGRGSWREAREGAARVLLPELVVQVILRELHALGLGPPGGGGEGLCGVCGRCKF
>NZ_AP019802.1|WP_011228296.1|53684_54638_-|IS110-like-element-IS1000B-family-transposase
MTFAGIDVSKTHLDLALVSNSPKPTRLRFPNSPEGRQALLAALAHHNPAWVALEPTSAYHLPLLKLLAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHEDLRAYTLPPETLRELKALVGYREDLAGRERTILNQMEAAEWAGSKEVLALLQKELACVKGLLGEVEARIQALLATLPEAEVLMALPGVGPQVAAAVLALLPPELWGRAKRAASYAGLIPEREESGKSVERSRLSKKGPPLLRRKLYMGALVAVRHDPEMRAFYHRLLSRGKRKKQALVAVAHKLLRRMMGRLREYYATQLDQGVA
>NZ_AP019802.1|WP_143591877.1|54895_55216_+|antibiotic-biosynthesis-monooxygenase
MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKDPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGTLPKEAFLGPSRLEAFEVVLDSEGRDG
>NZ_AP019802.1|WP_143591878.1|55208_55829_+|DUF3386-family-protein
MVETPPAWVLLKRARERIYTLPPDFPGFRARLGLCLDGVWYVGAVEAEGFAPKVLGLFGEAGAIAEKELGSLLGHRRPAPFEEGEGRYPMRLFAEGPLGTGIALEDPFRSRIWVKEGRLALIERHLPEGSFRIHLETWREVGERLLPHRFLLVHRDPRGHLLKVERFRDEYAQVGPYWLPVEREVVVEGEGLGVLVLRLEEVEVKG
>NZ_AP019802.1|WP_143591879.1|55825_56731_+|ABC-transporter-substrate-binding-protein
MRRLLLLLGVFGALASAQSYRVVDARGKAVEVRSVERIVSLDGITTEILFALGVGEKVVGRDDSSYYPPEAQRLPSVGYQFRLSAEGILSLKPTLVIGREDVRPKEVVEQLERAGVAVVLVPTEPSVEGAKAKIRTVAQAVGRVEQGEALVRALERDLLLLRAFQAQHAAKGKLRAFFLYLRGPGTTFVCGEGSTPVGVMELAGLENAAKGIRECQPMTAESVVAARPEVIVVFKKGLESVGGLEGLLKLPGVAQTPAGQKRKVVAMDDLYLGSFGPRAGRAALDLFRAAYLQEGFVEVGP
>NZ_AP019802.1|WP_011229087.1|56834_57860_+|iron-ABC-transporter-permease
MVGLFPRFRRYRLALLGFSLALPLTLLLGAGLGAYPIPPLAIPGILLRGEGVEYQVLVALRLPRVLGAAVVGGLLALAGAVLQGLFRNPLVDPGLIGVSSGAALGAALFIVLVPGAGPLEVYALPLFAFLGGLLATSLLWRLAQSPWGTQVTILLLSGIALNALVGAGIGLLTFLATEEELRSLTFWTLGGFSALTWRLLLVGVPFAFLAFALLLPLARPLNALALGEREAFHLGIDLERLKRRAVAGAALGVGVAVALAGGVGFLGLVAPHLFRLLAGPDHRYLLPGSALLGGSLAVLADLLARTLAAPAEIPVGVVTALLGGPFFLYLVLRHKREVYRA
>NZ_AP019802.1|WP_024118782.1|57852_58632_+|ABC-transporter-ATP-binding-protein
MLKVQNLGYRVGERWLLRGVDLAVGEGEFLAVLGPNGSGKTTLLRLLAGELRPTEGEVFLLGEPLAVYGPQALARQRAVLSQVREMAFPYTAYEVAFLGRLPHLVGRERPLDHRKTLEALERVRALSLKERLFPSLSGGEAMRVEVARLLNQEARLLLLDEPTNHLDPRYALELLCLFRALAYEGKGVVAVLHDLNLAGLFADRVLLLKEGRAVAYGPPQAVLHPGLLEEVYEVAFSVLGQPGGPTFWVPLPREVVRGA
>NZ_AP019802.1|WP_011229089.1|58621_58936_+|hypothetical-protein
MEPEHAEVVARLSEGRYLARCSCNGGTYHLHWDAATFRLTPEGLTFLAQVLEDLLAQGNDEGAVWLGSVGLRFRKGEGWGLLRLLRQGLLPGKEPPRALLRHLN
>NZ_AP019802.1|WP_024118783.1|58947_59862_+|iron-siderophore-ABC-transporter-substrate-binding-protein
MQKSLWLVGWVAALALAQAACPGGRVAHDLGEVCLPAPPKRVVTLDWRPLEDLLLLGVRPVAGADLEDFPRWVRLSLPPGIQNLGSRTAPNLELLAALKPDLILGYTGFQGRLYPELSRIAPTALYDYLPPEGQLAAMERHFLLHARLVGKEEEGKKVLEDLKRFLAQSGQSLRDKGLAEKPFLLVQAWAREKVYNVFTRATLASELLERIGLRNAWKGRAEAYGLSRVGPEGLVRLVRENPEVLVFLIAQPENNPFKDPAVGPLLRLTRAQILPLAPTTWTYGGPHSARVLVEEVLRAIGGVK
>NZ_AP019802.1|WP_143591880.1|59858_60905_+|hypothetical-protein
MRRIGIGLVLFGVALAQGFKEDLRATVEPLLLGLAGGTEVLAEAAEAYAGGPTTEGLNRLRLLWLAARRPWEELEAFAFGPVGEFDPYLDTWPISPEDLKRTLGSPAADLPPEVRGFHALEYLLFQEPARTPEAARHLARLARDLAEKAAALRRAYLDYLEKTPEEELVEELYAASLELAEELFSEKLKHPESPYAQASAEDYRANARGLAKALALLPLPGLAWALALDLERAVAALPSPLERAWDDPKVALALARAQDLYAALGKAPVGRAERRALLWLRAFREEYLDEGEVDEGLEALEGLKAALAGTPREEEALKLVEALEAKVRAAAPKEEVEPLVKALEDLLR
>NZ_AP019802.1|WP_143591881.1|60952_62137_+|c-type-cytochrome
MGMRRLLLGLLPLLLAGLPARYLVQDASSRAFGHPLPGLPEEALEAFRLGDQAFQRVFVREDGLGPRFVHQSCAGCHVGDGRGRPLFAERSEALVRTRAPDGQSPHPLFGLQLQDHALPGHTPEGRVELYWEEVEGRYPDGTPYRLRRPRLRVLDLEGKPVPGVYSLRIAPPVFGTGLLEKVPEAAILALEDPQDEDGDGISGRAARLEGGLGRFGWKASTASLLEQSALAYREDMGLSTPLFPEEGRAEVSEEELERVTFYVAHLAVPAPRHLPEDLRGKRLFREVGCASCHRERLGGLPAYTDLLLHDMGEALADGVAEGAASPAEWRTPPLWGIGLTRKVLGEGVYLHDGRAQSLEEAILWHGGEAEEAKRRFMALPKADREALLRFLRGL

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Crispr_ID: NZ_AP019802_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019802_3

103931-104265

TypeI

I-C,III-B

Consensus_repeat	Method
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	PILER-CR
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CRISPRCasFinder
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CRT

4 spacers

cas3,cas5,cas8c,cas7b,cas4,DinG,cmr6gr7

The CRISPR arrays of NZ_AP019802_3

>merge|NZ_AP019802|3|103931-104265|PILER-CR,CRISPRCasFinder,CRT
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAACGTCTACAGCACGGGGGCCGGGTACGGGGCCCAGAGAGGTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAACTCCCCAGGCATCCAGTCCCGCCCCTCGCGGATGGCGTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAACCCGCCATCCCCGTGGTGGGGCCGGTCCTCGCGGCGGCCGGTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAACCTCGCCCGCCTGCTCCAGGGGAGGAAGGTGTGGGTGGAGGTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC

>NZ_AP019802|3|3|103931-104265|PILER-CR
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	GTCTACAGCACGGGGGCCGGGTACGGGGCCCAGAGAG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	TCCCCAGGCATCCAGTCCCGCCCCTCGCGGATGGC
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CCGCCATCCCCGTGGTGGGGCCGGTCCTCGCGGCGGCCG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CTCGCCCGCCTGCTCCAGGGGAGGAAGGTGTGGGTGGAG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC

>NZ_AP019802|3|3|103931-104265|CRISPRCasFinder
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	GTCTACAGCACGGGGGCCGGGTACGGGGCCCAGAGAG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	TCCCCAGGCATCCAGTCCCGCCCCTCGCGGATGGC
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CCGCCATCCCCGTGGTGGGGCCGGTCCTCGCGGCGGCCG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CTCGCCCGCCTGCTCCAGGGGAGGAAGGTGTGGGTGGAG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC

>NZ_AP019802|3|3|103931-104265|CRT
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	GTCTACAGCACGGGGGCCGGGTACGGGGCCCAGAGAG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	TCCCCAGGCATCCAGTCCCGCCCCTCGCGGATGGC
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CCGCCATCCCCGTGGTGGGGCCGGTCCTCGCGGCGGCCG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC	CTCGCCCGCCTGCTCCAGGGGAGGAAGGTGTGGGTGGAG
GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019802.1\|WP_143591900.1\|95707_96553_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NZ_AP019802.1\|WP_143591899.1\|93425_95711_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239168
NZ_AP019802.1\|WP_143591913.1\|125899_126946_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_AP019802.1\|WP_143591910.1\|120533_122057_+\|transcription-antiterminator-BglG	unknown	unknown	gnl\|CDD\|223153
NZ_AP019802.1\|WP_143591908.1\|114211_119161_+\|RecQ-family-ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|223588
NZ_AP019802.1\|WP_143591904.1\|99098_100937_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|273839
NZ_AP019802.1\|WP_143591901.1\|96580_97333_+\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|377121
NZ_AP019802.1\|WP_143591911.1\|122654_123431_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_AP019802.1\|WP_143591903.1\|97947_99102_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_AP019802.1\|WP_041443918.1\|101544_103728_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_AP019802.1\|WP_143591906.1\|107371_112759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226973
NZ_AP019802.1\|WP_011174438.1\|120015_120558_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130902
NZ_AP019802.1\|WP_143591909.1\|119179_120019_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_AP019802.1\|WP_011174431.1\|100845_101535_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_AP019802.1\|WP_143591907.1\|112755_113859_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|307488
NZ_AP019802.1\|WP_143591902.1\|97607_97958_-\|Dna2/Cas4-domain-containing-protein	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_AP019802.1\|WP_143591897.1\|90886_92110_-\|DUF4143-domain-containing-protein	unknown	unknown	gnl\|CDD\|224292
NZ_AP019802.1\|WP_143591912.1\|123433_125146_-\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|225277
NZ_AP019802.1\|WP_172967316.1\|92214_92766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019802.1\|WP_143591905.1\|104357_107372_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|273634

Protein	Function_ID	Function_description	E-value
NZ_AP019802.1\|WP_143591900.1\|95707_96553_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	1.89398e-89
NZ_AP019802.1\|WP_143591899.1\|93425_95711_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|239168	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_AP019802.1\|WP_143591913.1\|125899_126946_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.35736e-49
NZ_AP019802.1\|WP_143591910.1\|120533_122057_+\|transcription-antiterminator-BglG	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	0.00458855
NZ_AP019802.1\|WP_143591908.1\|114211_119161_+\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.31522e-101
NZ_AP019802.1\|WP_143591904.1\|99098_100937_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|273839	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. We designate this family Csd1 (CRISPR/Cas Subtype DVULG protein 1). The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria. In a few species (Xanthomonas axonopodis pv. citri str. 306 and Streptococcus mutans UA159), homology to this protein family is split across two tandem genes; the trusted cutoff to this family is set low enough to capture at least the longer of the two.	0
NZ_AP019802.1\|WP_143591901.1\|96580_97333_+\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|377121	pfam03746, LamB_YcsF, LamB/YcsF family. This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes, lamA and lamB, involved in the utilisation of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. The exact molecular function of the proteins in this family is unknown.	2.35587e-140
NZ_AP019802.1\|WP_143591911.1\|122654_123431_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.27724e-06
NZ_AP019802.1\|WP_143591903.1\|97947_99102_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.82894e-87
NZ_AP019802.1\|WP_041443918.1\|101544_103728_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	8.23968e-53
NZ_AP019802.1\|WP_143591906.1\|107371_112759_-\|hypothetical-protein	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	4.59862e-06
NZ_AP019802.1\|WP_011174438.1\|120015_120558_+\|hypothetical-protein	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.93849e-05
NZ_AP019802.1\|WP_143591909.1\|119179_120019_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	9.34151e-07
NZ_AP019802.1\|WP_011174431.1\|100845_101535_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.33328e-90
NZ_AP019802.1\|WP_143591907.1\|112755_113859_-\|DUF11-domain-containing-protein	gnl\|CDD\|307488	pfam01345, DUF11, Domain of unknown function DUF11. A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond.	9.58578e-09
NZ_AP019802.1\|WP_143591902.1\|97607_97958_-\|Dna2/Cas4-domain-containing-protein	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.50572e-18
NZ_AP019802.1\|WP_143591897.1\|90886_92110_-\|DUF4143-domain-containing-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.33234e-59
NZ_AP019802.1\|WP_143591912.1\|123433_125146_-\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|225277	COG2414, COG2414, Aldehyde:ferredoxin oxidoreductase [Energy production and conversion].	9.48354e-99
NZ_AP019802.1\|WP_143591905.1\|104357_107372_-\|DUF11-domain-containing-protein	gnl\|CDD\|273634	TIGR01451, unnamed_protein_product, conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.	6.1073e-09

>NZ_AP019802.1|WP_041443918.1|101544_103728_-|CRISPR-associated-helicase/endonuclease-Cas3
MDPKAHTPNPQGAWHALKDHLEAVSRLAGGFAQHFGTPSLGQALALLHDLGKATRDFQAYLKVAAEGKRTNSVPHAVWGAALAYVALGSGQHEGWEAFGLPVMGHHAGLPKRGEAASKLAQALKEEPFKEVAAFLRSSELRTRLEGLLNEALKEVRSKTAGDPLRLDFLVRMAFSALVDADYLDTEAHFDPSVARLRQEGYSLEKLWARFHRDQEALLQRVRPSLVNSVRREVYEACLQAAELSPGLFRLTVPTGGGKTRSGLAFALRHALKHGLRRVVVAIPYTSIIDQTAQVYREILGEEAVLEHHSAYEPPLGEEQEENVLRQRLATENWDAPLVVTTTVQLFESLFSNRPSKMRKVHRLARSVILLDEVQTLPPELLKPTLEALRLLATPVEEGGYGATVVLSTATQPTFEVVPTFQGLPVREIVPDYPRHFARLQRVVYERRPKPLSWEELARELQARPQVMVVLNTRKDALALLEALGEDPHAYHLSTLLCPAHRREVLEEVRRRLREGAPVRLISTQVVEAGVDLDFPEVWRAIGPLDRVVQAAGRCNREGRLDKGKVVLFWPEEGTTPRGPYRVGVEKARLLLEEHPPERLHDPGLYQAYFKELFTTVKTDKGIQEHRKDLDYPEVARRYRLIQEDTVSVVVPYGEGLARLEAFQKAPSLQNWRRLQAYVVGLFRNQVRERRGFLEAVPGFQDLYVWRGSYDPRRGLVEEYADPSDLIV
>NZ_AP019802.1|WP_011174431.1|100845_101535_-|type-I-C-CRISPR-associated-protein-Cas5
MARLKVKVWGEYACFSRPEFKVERVSYPVPTPSAARGLLEAIFWKPEFRYEVRRIGVLRLGTPFALLRNEVGNRMGAKPFFVEDARQQRTSLVLKDVAYLVEADMVLRPHATDPLPKYLEQFERRLKKGQYHHTPYLGTREFPAYFSPPDGEVPDGGLNLDLGPMLFDLAFVEDPGRPELTFKRPGRGEVQGYALPLFFHARIREGWLEVPAEKYQELYRLEEGHAKGA
>NZ_AP019802.1|WP_143591904.1|99098_100937_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MPGSGKVGWRFPPKSTRSSTGWRKAMLRELKEAFHRFRKEGVLLPLAYKRKSVAWFIRLEGGKARLEGPYGKREGVEPIPAPDRQRSGKASEANLKPYLLVDDARYVLGLFEEGREDEAALLHKGFKELTEKAWRETQSPHVKAVLDLLSSPELGDLREEFRQKGGKPRDLLAFKVHGVLPTELEEVQAFWARHLAEEIQGGKGYCALCGTLGPVLRIFPREVVVLGQKCQLVSFNQKAFESFGKEQAANAPLCFTCASQVVDTLDYLIRSERHSRPLYREEEGGLRNQLAVFWLSEKVEVPLETPVDLETILGAVLSGALVHSPTPPADLTQLQELLATPWTGKAWPLNLDETRFHLAVLSANKGRLVVREWLAVSLSRLKETLGRFLEGTRLVRPWGEAPQPVPVGALVQALGDGNPGLVRGLLRTAYLGTPPPHALSLAIHLLRNPKTLTPEEREGWGRLHALVAALKLWLFYGKEEAKRMAELDKERKNPAYLSGRLLAVLEEAQKRASSYTLRRTLVDRFYGAASTTPAATFGVLLRLSTTAHLPKVGQELNQAVEEILSRLDEAGGFPRTLNLVGQAEFALGFYHQRAHFRANRAGKKGESAQGGS
>NZ_AP019802.1|WP_143591903.1|97947_99102_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MMSARYLDPKKRHEFVFLFDVRDGNPNGDPDAGNLPRVDPETMHGLVTDVALKRKIRDYIALTREGKPRFAIFVQSRVALNRLILEGFQEAGIEPVSLQLAEEQMANESLLEHLDGLAEAGFSREGSTLYYSGQATTEKEIAKLLMGEEEAVAPFKKELEKLAKELAKAVKGRKITEEDREKAQAKLLERFFDIRMFGAVLSTGLNAGQVRGPVQLTFARSLDPIAPLEVSITRVAITREEDRARKETEMGRKPLVPYGLYRAHGFFNPFLAAKTGVQPEDLEALWDALQHLFELDRSAARGEMTVRGLAVFSHEDAKGNAPAHRLFGLIRVERREGVEAPRSFADYRVRAPKEGSLEAHGFPEVHLAWLVRPEGLEDLPPHVG
>NZ_AP019802.1|WP_143591902.1|97607_97958_-|Dna2/Cas4-domain-containing-protein
MWDESIPISALQHFVYCPRQCALIHLEGVWEDNLYTLRGRRAHEGLDLPEGLVREGVRVEYALPLFSERLGLVGRADVVEFHSGVPYPVEHKVGPRRARKADEATSAQSGEGRGGA
>NZ_AP019802.1|WP_143591901.1|96580_97333_+|5-oxoprolinase-subunit-PxpA
MKVDLNADAGESYGAFAYGHDREIFPLVTSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPGTVYEEEARKAGLRVVLEAFPERAYLRNGQLAPRSMPGSWITDPEEAARRALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAPEVARAVREALEQAGVEVRAF
>NZ_AP019802.1|WP_143591900.1|95707_96553_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MKGKARVRVARLEGGRWREVRDEVAAEAPLEIRLRYRDEVASLGVVLRTPGQDAELAAGLLYTEGLLQDPKEVLAIAPCADGSLPPEAREGVIQVFLRHPLPPPPRRHLALTAACGACGREALPDPGRLGLSPPPPLAVDPDLLLALPERLGEAQRLFRATGGLHAAALFDREGRLVALREDVGRHNALDKLIGWAFLQGKLPLHDHILLVSGRAGYELLVKAVAAGIPVFCAVSAPTSLAVALAQAYGLTLVGFLRPGRMNVYAGRERVGPPRGPPNPCG
>NZ_AP019802.1|WP_143591899.1|93425_95711_+|FdhF/YdeP-family-oxidoreductase
MAWLNPFWSSPKAYVRPPKRGLAPELWASRIPFTHLENFYEVFRALWENRDNLPYAWRILKDGVCDGCALGTSGLEDWTLHGVHLCNVRLRLLRLNTLPPLDPKVLEDVEALKGRKSRELRRLGRLPYPMLRRKGERGFRRVSWDEALGLAAEYLRRHLPEGAFFYLTSRGVPNETYYVVQKAVRALGCNHVDNAARICHSPSTVVLKEALGVAATTCSYTDLIGTDLVVFLGSNVANNQPVMMKYLYHAKKAGTKVAVVNPYREPGMERYFVPSDLESALFGTRIADRFFQILPGGDIAFLHGAAKWMLEEGWVDPGFIRAHTAGFEAYKALLEAIPFAELEKAAGVSREEMRAFAEMVGRAERAVFVWGMGITQHTHGEDNVRAIVNLALLKGFVGREGCGLMPIRGHSGVQGGAEMGAYATAFPGGLPVNPENARRLAELWGFPVPDRPGLTTPEALDRALEGKLGVLWAIGGDFREVMPDPEAVEEALRRVPLRVHQDIVLSSQMLLEPGECVLLLPATTRYEVPGGVTETSTERRVIFSPEIPGPRPPEARPEWEVFQELVHRLRPELKDRFRFASTAEIREEIARVIPLYEGIQRLKAKGDQFQYGGRRLCEGWRFPTPDGKAHFCPVPLPQKEVPEGAFRVVTRRGKQFNSIVHEDQDPLTGAFRDAVYMNPKDAARLGLKPGDPVVLENAFGRYAGRVYLAEVKEGTLEVHWPEGNVLVDPKARSPLAHIPAYKEILAHLRRGEAEAPSPLRP
>NZ_AP019802.1|WP_172967316.1|92214_92766_+|hypothetical-protein
MNANPTLIHLAQLLAGRCPRRLLQGRLREAERAKDPGPGEDRGEAHHREVDRLLTLYRERGYWARTRVNVAFLETPLFPTTELDPVVADGERAAVVEVKTGEPRLEHLFQALRPRLPLGVGGATSWARRRQCSRTSLGLASLRTKPRLPIGARTCTRHPDLCKASPVCEGITRLRARGGFRVC
>NZ_AP019802.1|WP_143591897.1|90886_92110_-|DUF4143-domain-containing-protein
MFPRHLADRIKQALEDRPVVLLLGGRQVGKSTLAQALVAEGRLDRYLTLDDLTLLAAAQLDPQGFLSGLQGRVVLDEVQRAPGLFLPLKALVDRDRRPGRFLLTGSANVLALPRAAEHLVGRMALFTLWPLSQGELEGRKEGFLSALFAEEVPPVQGEGRWPLERLLRGGYPEAVRLPPERRGAWFRDYLATVLAREVRELSQVERLGELPRLYALLATRPAQLLNWAELSRASSLPATTLKRYFALLEALYLVRTLPPWQANLGKRLTKSPKVLPTDPGLALHAAGLDGARLEGDPILLGKYLEAFVAMEVVKQAGYAGVAVEVFHYRSHSGEEVDLVLEGPGGKVVGVEVKARGSLRPEDLRGLKSLAQALGPRFHRGVVLYLGRETVPFAKDLYALPLEALWRL
>NZ_AP019802.1|WP_143591905.1|104357_107372_-|DUF11-domain-containing-protein
MRAVLALALAALALSTWAEAQTVRPFSPRYEVNGHLDLRVVGNSLEACSSGAYTTITPTTPPSPSSCTTSGNNNSYTMAFVDFDADPSTFNASAAYLDLPSGAEVLWAGLYWGGSRGGSVSPPDPSAIGQVLFRKEGAPYQAVTAQQVDTGISHPQDPYAAFAEVTELVRAWGPGWYWVANVQASRGTVTGGTYAGWSLVVVYRLASLPLRHVSIYDGFLNQSASGAPTTITVSGFLTPYLGTVEASLGFVAQEGDLGTSGDSLRLNGVPLSGGSLRPSNNFFNSSATALDGSRNVIAFSQRQPGYSNLLGWDLGLVVADGVLPPGSSSATVTFSTNGDGYYPQVLAFLVNIYVPDLATTFTKTASDLNGGDLLVGDLLEYAVSFSNTGLDGATNVVVVDPIPAGTQYVPGSLRVVQNAAAAPTGTFTDAPGDDIAEYSPSCPEAGGGPCVRFRLGTGADASQGGLVLPGQGAEVRFRVQVLPSAAGQTISNTAKVSYNAQTLGTGFRQEATSSASVTVVGFTLAGQVYHDLEPNGLKSSGESWSDGATVWVKLLQGGSVVAQAQVDPGSGVFSFTGVAPGSYTLFLDNNNDPSDTTPTPPPGWLFVNPPSGSLNVSVSQDLSGLDFGLFHGARLVGTVFYDDGEGGGAANDAWQTGGERGVSGVAVTAQGSGTRSATTDGQGRYVLYIPWNFGPFTLSHPLRPATGWNDGSTAHQVSGWSEAQSPTFPTLDAGAIAGTEVARNFGVVRESRLYPPQTGQAASPGVVVYAHHYRPGTLGSLTLSLANAPSWTVQVRVDGNRDGDFDDPGEGFASLPQTLPMGPSWPREADGSLKACALEVRVLVPPGVPAGAVDVALLQGGLSWANNPGVVDLRSLADTTTVSGGEVRLEKRVRNVSQGTGFGTLGEGRPGEVLEYCVAYRNLGTASVSQFVLTDPVPFFTDPLPSVPDYGGKAIRWSHGSATLYLTASQGDDAGEVSGGVVRVEVGNVGPGEAGEVCYRAQIR
>NZ_AP019802.1|WP_143591906.1|107371_112759_-|hypothetical-protein
MKRVFALVLLLLPALAQPVARELKATVVGDGVGWETHALRIWLVIPEKGRVRLDLFSPGFDPTDYRSALLGKPELGDERYDGGKGELKATFRLYRDGKPLREMAFGVEPHRWVPFFEGEMEAGVYLFESELLGNGKNTFVLRVEAPSFKLSLDPKPQLILDVFTQTTTLRLLPDERGRVWVEPLGVYSEGPLEVAFYDEDGPEELRARVRYEDGSVEERPVSGDREWTTYTKRPGLALFGFTQPPTARQHSNTVAFRVGACTSLENGVLKAIPPGEARARVVDEEGRPLPVPVEEKDRVFRPLLPEGASLLRVEARGAVLVRGDRVAVGCPGGEVTFVVRLPKPPPPERPPQGEVRFRVVAALPGGELPAKATLRLGDLEAPVDGERTLALPQGRYPLAVLAEGARVEAPQEVEVLPGKRQEVLVRLLPEVALSLAPKEVYLRVGEEGEVVLTATTPYPGLLPAELSLELPEGLTPLGASRAQGPLTKDRPFQLRVRFLAEKEGTYALSGLLAPWGLRAEGRAVVVRPATFRLVKEALTPEVEAGGVARFRVTVVNEGDEEGRAVLVDRFLGTEERREVFLKAKEGRSYEFAFPVPLEAQGTLVNRAELSTGEKAEAGVRVLRPKAHLERSLPHRVYLPGEEVVLSFLVENRGEAPMRYVLEDACPDWLSPLGPARFEGHLEPGERALHAYRARVLLGPEAEGACAATLRTPTETLRAEVALKRRPLLLEKEADPPRLLEGGQGVFRLRVRNPADHRVEVELRDIPGKGLGMDPWSERVALEAGEERVFTLPFRAEAMGELENGLSAFLGETPAAFPVKAKVAVLPVLVPERTSVVRLPFRVEGEGDALLLGFKPPEGAEYSPGSARLDGRPVEEPRVLPDGTLVWRLPFAREGLLTLTLLHTRALPPLPEPALTLLRLDRELPLKGGLRLRDYEGAKPLSAKRKGPIREPMDGAIVQQEAVALRIEAPLGPIAVRVNGLEVESRLLGEAQYDEERKVQRLAYYGVPLRPGRNVVEVEGPGFYDKVEVFRPGPPKDLVLEPVRLRADGRTPLEFRLKAVDGMGLPTGFGLATLEADPEPIAPDASPLEPGYQVLLRDGVGTVTLKPLLTPKEVRLRARFNKLEKTFRLFAGGAQEPLWLAQGSVGVAYDPEEGRPRLFGLARGYVEAPLEGGFLQGALDTTGGLSQTPEAGFFPVTGSGEEARRPLASDDPVALRYTTPEYTLAYERGPLAPGLGEATALRLATRGDARVEAFLALLPKGSVREEIVPDGTAFYRLSGSPAPGSLRLFLVEGGRTRALEAGVDYTYDFLSGEIVLAKPLAPFTPEFAPVRLVAEYAPLSAPREELALGARAAYEAGPWRFGLGGYLRLDLQGFASQGYALGASLAYGEGGSEVGLEAAFAGKWRFGLSAALSEGPLEARGNLAYEEGGEVQGAFRAAYDLGPGVVALEHTTPGRTGLVYEAKLARGFRFGLGAGYAWREGGLYLLGRAAYQEGRARFGLSHAYLLFGGQETRLDLLWPLGEALEAEGSLAYLWGEGLQGAFGLRQRLGSANLALSYQLPTASGEGNRARFGLEAPLPLTENLSANLGLYALYAFSGGQGELGGSLGLRYAREGLVATFGVEGALGPKLTLRGGAAGSLDPENTLGLDFALSLLPEAKGRFSLAYALRASDLSLLTYHRYATETGLLEGQLAALYAPYPEWSLRPAFGYRYPFPDPEGATYALGLYATFFPTELLGLGGGASYTFQPATGAGDLSFSVEATLRLSPLWLSLGYQFGASLFAPEGVYLRLDVFGGER
>NZ_AP019802.1|WP_143591907.1|112755_113859_-|DUF11-domain-containing-protein
MRVRVKADTPDDTLLQNRFTLTSESTPNPLVSNEVRHPVLSVNLALSKEVAPKEAAPGDLLTYTLKVTNPASTPLEVRLEDTPDPRLAYLEGSARGGRCGGSLNPLEPVREGASLRWTLSLGPKESFCLEYRMRVLPGAPATLVNLAKAQGLSAHGAATAQVQARAQVRVRLGPLGLERGVLLGRVYLDVNEDGRYDPGNDVPLPGARVVLANGWQTLTDREGRYAFRDLEPGVWQVMLDPASAPFPPLPHPEALGEGYRHGVRVQGLSVSDFPLKAPKGFLEAYRETTLRFGPLTLEKRLLPLKEGFRVVLLLRSQEPLEDLTVRDPQPDGTEKTFHFALFSGEEVLEYALEEPYMSDPEVRWRYP
>NZ_AP019802.1|WP_143591908.1|114211_119161_+|RecQ-family-ATP-dependent-DNA-helicase
MAFGVSHPVALDLEATSTDPSEAEVLEVAAVDGEGRVFHRYLATQRPLPPDHEVFQLTGIPYEEYEAKKVAPKEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLPRWQGEALDTLRLAHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRLLDQGRRALAQHPGLVRAWRELGLPEGHLFPEDEGLIKDLLAREADVEAFFVEKEGRPFPAPTDLGPDLLPKPRPAQRRMFQLVEEALSREEILLLEAPTGTGKTKGYLYPVLHQRKPTWVATHTKVLQAQAMEELRAVAQRGYRVRAALVKSPQDTLCPDRLLEAFLREARSGKPGEDVGAAIAVLLHYAAQRGHDLEALPAYWHFLEGFREVRGRVGTNPDRCRRECPFASACAYQAILRRREEAQILVTNQAYLLHSLLGEKALPEARPALVLDEAHHLEDVATEALTLKVDGEGLRHLLEALANPSKRSGLLQERDYLKSLEDDLRASAETLAKEAVPKALEALKAYSERMERFLKRRGVGSPEHGLTLPLEPSWTRDEEYPLLDREERHLIQSLEALAKGLEGLLDAHPPPWPLLLREIRPLLQELRQAIRLFLRRKRVLKGEADEALHLTRLDPVTETWSHLAEPIEVAAELEEKLWPAFRGVVLTSATLAVPTETDPEGFAFLQRALGLPPQARAERLPPSLPYHRAHLLVPRHLPEARESTLPRFQRLLHRELRLVLGRVPRTLTLFTSLGRLEAAKKALEDLPHLRAPLTRREREDTVRFARSNPTEPLAALGSRSFMEGVDLPHLRVVNLERLPFPYPSPLLKRRMALAYERGLDPWEDYYLPKAVLSFVQAFGRLIRDDRQVAGDGAFILWDKKLLHADYQELFYRALPDGVAHHFPGDRQAFYRKLEEILGLAFPGAEEELSEEAWAKVKAILAEAGLDPLERARRLAEEVHGVLVDEARWAKQREAVRAALEGRHLLALLPTGFGKSLAFQIPAWMSPGLTLVISPLVALMKDQVDRLQELGLPALALHGLMSWGEQASVLDEVRAGQVRLLYLAPERINRSEAVRKALRELREAGKLVRVVFDEAHCLLEWGYDFRPDYLKALEWLRELGLPMSFFTATLTPEERARLKEVAGIPEAVEVLPETFHRPNLRFVVRQAPGEVGKFDRLAQALLWVEKTGGSAIVYATSRAETERLAWALDRLFPSLGVEAYHAGLGPVLRKEVQERFMRGESRVVVATTAFGMGVDKPDVRLVVHWRPPLSLEEYAQQAGRAGRDGKEAYALLLYTHGDWGFLRWMVGLGQRGTERLEALAERLLARLPFRGYRKELLELLMTEGAEEAAEEEASDLEAGPALSGEDLERLLLGMEQAGLIRYEYLPGKASLYLSPEQWEAFARTPGLAERLVRAGYRPGSRQNVLDLSKLPREEAEDLDRYLYQAYRKGEAILYRYREPLLLVERVDPGKIVHWRASLEASRARALERLGRVQAYATQGRCRALVLLSHLNGERRRCGTCDVCAQDGGPWEAMENFHEEELLRAYKPLDTLLAFFRWAEDHYPQKPLLGRKATLMALRGKAWTGNGPLHRRYLENRFFGHLSFLKPKELEQAFREALERGYLEQKGSWQGHPLFGLTDHGRQRLRKGARGKEAR
>NZ_AP019802.1|WP_143591909.1|119179_120019_+|hypothetical-protein
MDPSKAFRIPSLEELPPRETSLRPTTPPLPEFTPTGEGALPALDPKAKATPAPPPERGPLSLQGELKRTRDQLERLKVKLAQAEKARAEAVKERDKARQEAAVLRKQVEALTASHAALKQALEKAQEDLKILQEELETLKKEKGELETLRKERDELFARAARWEKAETLRERLQEPFPLEAFFRMLFVPYSELGPGPEVRLLALIEGYRALLQGKEHPMLSRTNRELLSGEPEGIVLLGVERLLLDLAESPLPRWLKTHAWLAEAFLTREKLSSPREEA
>NZ_AP019802.1|WP_011174438.1|120015_120558_+|hypothetical-protein
MTWEEEKKALEARFREDLAWYEREWEACRRKLEEERQEWNATRKRLLNELSQSSRKVWELKKRLEALQGLEERYSALEREVRGLRRKLAALDRPAIGRRYLEALREDLALWDELLLAEAERLQTRGLEGFLQELWAKREAAFRHWQAGEDVDFATVRTALVLEWAIWTWLEAGWNPGRTP
>NZ_AP019802.1|WP_143591910.1|120533_122057_+|transcription-antiterminator-BglG
MEPWAHAVNLHRAVEAALEAQNLAHLQVRRENVEGAKPLVRALWTGEWRADPLAKSRDGVVPGYLLLGFLGGHFFDRDLPENDLAFWPEFHRALGLNQGQPTPKQRDKLWKVLEGLPGTKAFLRFHADGKRDFVGTLKALFGARTLRLKEILDHLRLYRDEAKLQEEALGPYASLVRGLKEALDLLAEEALDAAEQEDVEALVARLEALGFYAEEPHPLRFLFHRSPKAFAELYAEWRGEKKTTPLRHPQVRVEVLQGKEVLERVLPQIRREVLVEGALVYGQVRLKSGLFRGFSWRPRLDTEGNPIPEEVAVPLSEGQVVLRLHHRAWGVRFLDERGQVCPEWRPPEPLEVRPLVDEGTPVRFLLEGGGDPVERLEDLPLELGLPEDALVVEALVFGSREHGEWRPLGRLPVRLEARLEERLSETALELEVFPRGPLEAVWLAPAGPKQTFPEGRACIPRDLWPAKILVKAWGRAWEILVPPKGWPEKAWRRGLGLPAVGANKFGK
>NZ_AP019802.1|WP_143591911.1|122654_123431_+|CPBP-family-intramembrane-metalloprotease
MRALYWTFGLSWSLALAAYLLGLRPQNPAYLAFAVLYMWVPGLVALAFARKEGVGLPLALRPNRFWLFAWLFPVALTLLSLPLSLPFAPWKGLAWALPEGLPRIPEAALWALVLLQGLFAGATVNLLAALGEELFWRGYLWEKLRERGFWPASLEIGFYWGLWHAPLVLLFGHNYPDHRLLGVGMMVLFTLALTPALLYAREKGGSLWAPALLHGTLNAVAGLSLLAVERTHDLLVGVVGLPGLFLLALFNLWLRRRV
>NZ_AP019802.1|WP_143591912.1|123433_125146_-|aldehyde-ferredoxin-oxidoreductase
MWRSLRVDLKARKAYWQEVPPEEVAFGGRYRTGQVLLEREAYRVDPLSPENPLVFAVGPLAGTGFSNANRTSVGTRSPLTLGIKEANGGGTFGYALGQLRLAHLVLEGESPEWVVLRLTRSGEVHFDPAQDLLGLGNFEAARRLFAAYGQRIAFALLGPVGEYLGLLSGIAFSDTDGRPSRIAARGGVGAVMGRKRVKAIVVEVPGKAEVVDKPKVAEAIRRYAKLLREDPLVMQFYNAIGTMGMADFQNAFGGLPVRNFREGRLAPPEAFRMGGQYIAPLNKSRGGKHTHACMPGCVIQCSNVIVDEKGEEVVSPLEYETIGLLGTNCGLNDPDQLARLNRLANDLGIDTIETGATLALLMEKGLAPWGDYAFMEAKLKALYTPSEEARFLAQGTARVGEALGLKRVPVIKRQAISAYDPRVVEATGITMMVTAQGADHTAGNAPRLETRARKAEEVLEASYTAQVNAAANDSLGLCVFGGSVTNKEVAFVVESVNAALGTDFSPELWRKLGEGVLRLEHRFNHLAGFTHEDDRLPAFFYEEPVPPKGYTARFRPEDLGPLYERLHQEP
>NZ_AP019802.1|WP_143591913.1|125899_126946_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MGRRSALEGVRLPQGKEPHRGLWLDKFLRSARREDTEAKRVLVREAAGIPEPGEYRAFFERYRGALEALGAEIREARTLSRLVVGLGGEGVLETALTLHRAYGVPYIPGSALKGLASRYAHLYLEGEAWRRDLARFHRGEAQAGLFGTTEEQGLVVFWDALPLPGKWKLHPDILNPHHPDYYGSGEAPPADWDGPVPVPFLSATGTFLLALSPAPGVSPEEAGPWLRAAWRILAWALREEGVGAKTSSGYGRMALEEPASQGEKPLAPGPSPVLQDLLTRARALSYREVPRFLASQVEAILGLSVEEAQALRRALEERGFLRNPQDLKRWRKEHPGLEGVLAKLGLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019802_1	1.1\|40083\|35\|NZ_AP019802\|CRT	40083-40117	35	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40083-40117	0	1.0
NZ_AP019802_1	1.2\|40154\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40154-40190	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40154-40190	0	1.0
NZ_AP019802_1	1.3\|40227\|40\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40227-40266	40	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40227-40266	0	1.0
NZ_AP019802_1	1.4\|40303\|36\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40303-40338	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40303-40338	0	1.0
NZ_AP019802_1	1.5\|40375\|36\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40375-40410	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40375-40410	0	1.0
NZ_AP019802_1	1.6\|40447\|38\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40447-40484	38	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40447-40484	0	1.0
NZ_AP019802_1	1.7\|40521\|36\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40521-40556	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40521-40556	0	1.0
NZ_AP019802_1	1.8\|40593\|38\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40593-40630	38	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40593-40630	0	1.0
NZ_AP019802_1	1.9\|40667\|35\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40667-40701	35	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40667-40701	0	1.0
NZ_AP019802_1	1.10\|40738\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40738-40774	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40738-40774	0	1.0
NZ_AP019802_1	1.11\|40811\|36\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40811-40846	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40811-40846	0	1.0
NZ_AP019802_1	1.12\|40883\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40883-40919	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40883-40919	0	1.0
NZ_AP019802_1	1.13\|40956\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40956-40992	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	40956-40992	0	1.0
NZ_AP019802_1	1.14\|41029\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41029-41065	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	41029-41065	0	1.0
NZ_AP019802_1	1.15\|41102\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41102-41138	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	41102-41138	0	1.0
NZ_AP019802_1	1.16\|41175\|38\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41175-41212	38	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	41175-41212	0	1.0
NZ_AP019802_1	1.17\|41249\|38\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41249-41286	38	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	41249-41286	0	1.0
NZ_AP019802_2	2.1\|52228\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52228-52263	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52228-52263	0	1.0
NZ_AP019802_2	2.2\|52300\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52300-52338	39	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52300-52338	0	1.0
NZ_AP019802_2	2.3\|52375\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52375-52413	39	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52375-52413	0	1.0
NZ_AP019802_2	2.4\|52450\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52450-52485	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52450-52485	0	1.0
NZ_AP019802_2	2.4\|52450\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52450-52485	36	MH673671	Thermus phage phiKo, complete genome	4089-4124	0	1.0
NZ_AP019802_2	2.5\|52522\|37\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52522-52558	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52522-52558	0	1.0
NZ_AP019802_2	2.6\|52595\|35\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52595-52629	35	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52595-52629	0	1.0
NZ_AP019802_2	2.7\|52666\|35\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52666-52700	35	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52666-52700	0	1.0
NZ_AP019802_2	2.8\|52737\|37\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52737-52773	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52737-52773	0	1.0
NZ_AP019802_2	2.9\|52810\|34\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52810-52843	34	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52810-52843	0	1.0
NZ_AP019802_2	2.10\|52880\|34\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52880-52913	34	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52880-52913	0	1.0
NZ_AP019802_2	2.11\|52950\|38\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	52950-52987	38	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	52950-52987	0	1.0
NZ_AP019802_2	2.12\|53024\|38\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53024-53061	38	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53024-53061	0	1.0
NZ_AP019802_2	2.13\|53098\|38\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53098-53135	38	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53098-53135	0	1.0
NZ_AP019802_2	2.14\|53172\|37\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53172-53208	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53172-53208	0	1.0
NZ_AP019802_2	2.15\|53245\|37\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53245-53281	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53245-53281	0	1.0
NZ_AP019802_2	2.16\|53318\|32\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53318-53349	32	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53318-53349	0	1.0
NZ_AP019802_2	2.17\|53386\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53386-53421	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53386-53421	0	1.0
NZ_AP019802_2	2.18\|53458\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53458-53493	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53458-53493	0	1.0
NZ_AP019802_2	2.19\|53530\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53530-53565	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53530-53565	0	1.0
NZ_AP019802_2	2.19\|53530\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53530-53565	36	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	228016-228051	0	1.0
NZ_AP019802_2	2.20\|53602\|36\|NZ_AP019802\|CRISPRCasFinder,CRT	53602-53637	36	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	53602-53637	0	1.0
NZ_AP019802_2	2.20\|53602\|36\|NZ_AP019802\|CRISPRCasFinder,CRT	53602-53637	36	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	227944-227979	0	1.0
NZ_AP019802_3	3.1\|103968\|37\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	103968-104004	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	103968-104004	0	1.0
NZ_AP019802_3	3.2\|104042\|35\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104042-104076	35	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	104042-104076	0	1.0
NZ_AP019802_3	3.3\|104114\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104114-104152	39	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	104114-104152	0	1.0
NZ_AP019802_3	3.4\|104190\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104190-104228	39	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	152739-152777	0	1.0
NZ_AP019802_3	3.4\|104190\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104190-104228	39	NC_010878	Thermus sp. 4C plasmid pL4C, complete sequence	1678-1716	0	1.0
NZ_AP019802_3	3.4\|104190\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104190-104228	39	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	104190-104228	0	1.0
NZ_AP019802_1	1.3\|40227\|40\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40227-40266	40	NC_004462	Thermus thermophilus phage IN93, complete genome	4323-4362	1	0.975
NZ_AP019802_1	1.3\|40227\|40\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40227-40266	40	AB063393	Thermus thermophilus phage IN93 DNA, complete genome	4323-4362	1	0.975
NZ_AP019802_2	2.17\|53386\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53386-53421	36	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	38350-38385	1	0.972
NZ_AP019802_2	2.17\|53386\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53386-53421	36	NC_017590	Thermus thermophilus JL-18 plasmid pTTJL1802, complete sequence	135987-136022	1	0.972
NZ_AP019802_2	2.17\|53386\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53386-53421	36	NZ_LR027519	Thermus thermophilus isolate TTHNAR1 plasmid 3, complete sequence	47267-47302	2	0.944
NZ_AP019802_2	2.18\|53458\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53458-53493	36	NC_004462	Thermus thermophilus phage IN93, complete genome	6182-6217	2	0.944
NZ_AP019802_2	2.18\|53458\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53458-53493	36	AB063393	Thermus thermophilus phage IN93 DNA, complete genome	6182-6217	2	0.944
NZ_AP019802_1	1.15\|41102\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41102-41138	37	MH673671	Thermus phage phiKo, complete genome	5093-5129	3	0.919
NZ_AP019802_3	3.3\|104114\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104114-104152	39	NC_004462	Thermus thermophilus phage IN93, complete genome	9676-9714	3	0.923
NZ_AP019802_3	3.3\|104114\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104114-104152	39	AB063393	Thermus thermophilus phage IN93 DNA, complete genome	9676-9714	3	0.923
NZ_AP019802_1	1.2\|40154\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40154-40190	37	NC_004462	Thermus thermophilus phage IN93, complete genome	2946-2982	4	0.892
NZ_AP019802_1	1.2\|40154\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	40154-40190	37	AB063393	Thermus thermophilus phage IN93 DNA, complete genome	2946-2982	4	0.892
NZ_AP019802_1	1.14\|41029\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41029-41065	37	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1743854-1743890	8	0.784
NZ_AP019802_1	1.14\|41029\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41029-41065	37	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1582302-1582338	8	0.784
NZ_AP019802_1	1.14\|41029\|37\|NZ_AP019802\|CRT,PILER-CR,CRISPRCasFinder	41029-41065	37	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	433966-434002	9	0.757
NZ_AP019802_3	3.3\|104114\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104114-104152	39	NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	5312-5350	10	0.744
NZ_AP019802_3	3.3\|104114\|39\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	104114-104152	39	NZ_AP019793	Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence	30435-30473	10	0.744
NZ_AP019802_2	2.15\|53245\|37\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53245-53281	37	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	213569-213605	11	0.703
NZ_AP019802_2	2.15\|53245\|37\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53245-53281	37	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1599543-1599579	11	0.703
NZ_AP019802_2	2.17\|53386\|36\|NZ_AP019802\|PILER-CR,CRISPRCasFinder,CRT	53386-53421	36	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	243475-243510	11	0.694

1. spacer 1.1|40083|35|NZ_AP019802|CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ctgaatggagcttccctcccgcccgactgggaagt	CRISPR spacer
ctgaatggagcttccctcccgcccgactgggaagt	Protospacer
***********************************

2. spacer 1.2|40154|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tggtggaaggagaaggagggcgtatgcctaagcggaa	CRISPR spacer
tggtggaaggagaaggagggcgtatgcctaagcggaa	Protospacer
*************************************

3. spacer 1.3|40227|40|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ccccaggggaggggaggaggccaggcaaaaggtgctcacc	CRISPR spacer
ccccaggggaggggaggaggccaggcaaaaggtgctcacc	Protospacer
****************************************

4. spacer 1.4|40303|36|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ggcccctagggcgatgtccccggtggggctggagag	CRISPR spacer
ggcccctagggcgatgtccccggtggggctggagag	Protospacer
************************************

5. spacer 1.5|40375|36|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ctgggccagagccaccgaaccaaaaagagccaaaac	CRISPR spacer
ctgggccagagccaccgaaccaaaaagagccaaaac	Protospacer
************************************

6. spacer 1.6|40447|38|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

gagaggagggcggtcatggggccggagaggatctccag	CRISPR spacer
gagaggagggcggtcatggggccggagaggatctccag	Protospacer
**************************************

7. spacer 1.7|40521|36|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ctaggtccacgtagagcctcggggagaggggaggct	CRISPR spacer
ctaggtccacgtagagcctcggggagaggggaggct	Protospacer
************************************

8. spacer 1.8|40593|38|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

aagggggtccgctctgttgcccacctcgcaggggaact	CRISPR spacer
aagggggtccgctctgttgcccacctcgcaggggaact	Protospacer
**************************************

9. spacer 1.9|40667|35|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ggtgcagattttgcacggggggggtgcagattttg	CRISPR spacer
ggtgcagattttgcacggggggggtgcagattttg	Protospacer
***********************************

10. spacer 1.10|40738|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

aacacagcgctactgcgaccttctacccctacagcgc	CRISPR spacer
aacacagcgctactgcgaccttctacccctacagcgc	Protospacer
*************************************

11. spacer 1.11|40811|36|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

gaaggagggagtatgccgaagaacctgacgccgcaa	CRISPR spacer
gaaggagggagtatgccgaagaacctgacgccgcaa	Protospacer
************************************

12. spacer 1.12|40883|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ccgaggggacctggagacgctcctcgccctgatggag	CRISPR spacer
ccgaggggacctggagacgctcctcgccctgatggag	Protospacer
*************************************

13. spacer 1.13|40956|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ggaagtacgctcgcccccagcgcccctcggccacgta	CRISPR spacer
ggaagtacgctcgcccccagcgcccctcggccacgta	Protospacer
*************************************

14. spacer 1.14|41029|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

cggcagcccaggtggtcaacgccatcgggagcaccta	CRISPR spacer
cggcagcccaggtggtcaacgccatcgggagcaccta	Protospacer
*************************************

15. spacer 1.15|41102|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcccccgtctgggtgatgggctgagtgtcctccag	CRISPR spacer
tgtcccccgtctgggtgatgggctgagtgtcctccag	Protospacer
*************************************

16. spacer 1.16|41175|38|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

gggcaaggggggagagggccttcctccccccctagttg	CRISPR spacer
gggcaaggggggagagggccttcctccccccctagttg	Protospacer
**************************************

17. spacer 1.17|41249|38|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ggaggtcctgctcgtctgcaggtttcagctcaggcatc	CRISPR spacer
ggaggtcctgctcgtctgcaggtttcagctcaggcatc	Protospacer
**************************************

18. spacer 2.1|52228|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ctggacctgcaccgtggtgcggcgggacaaggccat	CRISPR spacer
ctggacctgcaccgtggtgcggcgggacaaggccat	Protospacer
************************************

19. spacer 2.2|52300|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

gtagtgctcctccagagtggagccatctggccgctccag	CRISPR spacer
gtagtgctcctccagagtggagccatctggccgctccag	Protospacer
***************************************

20. spacer 2.3|52375|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

gtggtagagatccgctccgtgtctggccgccgggtccgg	CRISPR spacer
gtggtagagatccgctccgtgtctggccgccgggtccgg	Protospacer
***************************************

21. spacer 2.4|52450|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgattatcgcggcggtggtgctcgccctcaccgc	CRISPR spacer
ggcgattatcgcggcggtggtgctcgccctcaccgc	Protospacer
************************************

22. spacer 2.4|52450|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to MH673671 (Thermus phage phiKo, complete genome) position: , mismatch: 0, identity: 1.0

ggcgattatcgcggcggtggtgctcgccctcaccgc	CRISPR spacer
ggcgattatcgcggcggtggtgctcgccctcaccgc	Protospacer
************************************

23. spacer 2.5|52522|37|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ttggccctcctcacgggggcatacgcctacaccgtgg	CRISPR spacer
ttggccctcctcacgggggcatacgcctacaccgtgg	Protospacer
*************************************

24. spacer 2.6|52595|35|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ataatccagtccggcacgggcggaagcccggtctc	CRISPR spacer
ataatccagtccggcacgggcggaagcccggtctc	Protospacer
***********************************

25. spacer 2.7|52666|35|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ttctccaggctctccacgcggagggcccccagccc	CRISPR spacer
ttctccaggctctccacgcggagggcccccagccc	Protospacer
***********************************

26. spacer 2.8|52737|37|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tagccaaacccgccgttgccgtccgtcctcgccacct	CRISPR spacer
tagccaaacccgccgttgccgtccgtcctcgccacct	Protospacer
*************************************

27. spacer 2.9|52810|34|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ttgagatgggtgaggcatgcgctatttgcctgct	CRISPR spacer
ttgagatgggtgaggcatgcgctatttgcctgct	Protospacer
**********************************

28. spacer 2.10|52880|34|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

caggaccttgggacagaggctcttggcgccgcca	CRISPR spacer
caggaccttgggacagaggctcttggcgccgcca	Protospacer
**********************************

29. spacer 2.11|52950|38|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

aggtgggggcgctccttatcggagaggggcgcctcgag	CRISPR spacer
aggtgggggcgctccttatcggagaggggcgcctcgag	Protospacer
**************************************

30. spacer 2.12|53024|38|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

agggcatggagcttcgccccgaccctctgcactatttg	CRISPR spacer
agggcatggagcttcgccccgaccctctgcactatttg	Protospacer
**************************************

31. spacer 2.13|53098|38|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tgctccttgtaggcgccctggtacttccgccgggccag	CRISPR spacer
tgctccttgtaggcgccctggtacttccgccgggccag	Protospacer
**************************************

32. spacer 2.14|53172|37|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tgataggcgcgccccacctgccgcagcaacctacgcg	CRISPR spacer
tgataggcgcgccccacctgccgcagcaacctacgcg	Protospacer
*************************************

33. spacer 2.15|53245|37|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

cccgaggttccggggggcaccaggctgccgtccggca	CRISPR spacer
cccgaggttccggggggcaccaggctgccgtccggca	Protospacer
*************************************

34. spacer 2.16|53318|32|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tcaaagggtccctctattaccctggcgtggaa	CRISPR spacer
tcaaagggtccctctattaccctggcgtggaa	Protospacer
********************************

35. spacer 2.17|53386|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tgaggagggtcgtcttccccgtgcggggcggtccca	CRISPR spacer
tgaggagggtcgtcttccccgtgcggggcggtccca	Protospacer
************************************

36. spacer 2.18|53458|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

aaggtgggcgagttcgtggtgccctcgggggccacg	CRISPR spacer
aaggtgggcgagttcgtggtgccctcgggggccacg	Protospacer
************************************

37. spacer 2.19|53530|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

agccgatacccctctctccagtccaggggggcctcc	CRISPR spacer
agccgatacccctctctccagtccaggggggcctcc	Protospacer
************************************

38. spacer 2.19|53530|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 0, identity: 1.0

agccgatacccctctctccagtccaggggggcctcc	CRISPR spacer
agccgatacccctctctccagtccaggggggcctcc	Protospacer
************************************

39. spacer 2.20|53602|36|NZ_AP019802|CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ggcttgggaagcccctcagccagctcgtccaccagc	CRISPR spacer
ggcttgggaagcccctcagccagctcgtccaccagc	Protospacer
************************************

40. spacer 2.20|53602|36|NZ_AP019802|CRISPRCasFinder,CRT matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 0, identity: 1.0

ggcttgggaagcccctcagccagctcgtccaccagc	CRISPR spacer
ggcttgggaagcccctcagccagctcgtccaccagc	Protospacer
************************************

41. spacer 3.1|103968|37|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

gtctacagcacgggggccgggtacggggcccagagag	CRISPR spacer
gtctacagcacgggggccgggtacggggcccagagag	Protospacer
*************************************

42. spacer 3.2|104042|35|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

tccccaggcatccagtcccgcccctcgcggatggc	CRISPR spacer
tccccaggcatccagtcccgcccctcgcggatggc	Protospacer
***********************************

43. spacer 3.3|104114|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ccgccatccccgtggtggggccggtcctcgcggcggccg	CRISPR spacer
ccgccatccccgtggtggggccggtcctcgcggcggccg	Protospacer
***************************************

44. spacer 3.4|104190|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgcccgcctgctccaggggaggaaggtgtgggtggag	CRISPR spacer
ctcgcccgcctgctccaggggaggaaggtgtgggtggag	Protospacer
***************************************

45. spacer 3.4|104190|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_010878 (Thermus sp. 4C plasmid pL4C, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgcccgcctgctccaggggaggaaggtgtgggtggag	CRISPR spacer
ctcgcccgcctgctccaggggaggaaggtgtgggtggag	Protospacer
***************************************

46. spacer 3.4|104190|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgcccgcctgctccaggggaggaaggtgtgggtggag	CRISPR spacer
ctcgcccgcctgctccaggggaggaaggtgtgggtggag	Protospacer
***************************************

47. spacer 1.3|40227|40|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NC_004462 (Thermus thermophilus phage IN93, complete genome) position: , mismatch: 1, identity: 0.975

ccccaggggaggggaggaggccaggcaaaaggtgctcacc	CRISPR spacer
ccccaggggaggggaggaggccagacaaaaggtgctcacc	Protospacer
************************.***************

48. spacer 1.3|40227|40|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to AB063393 (Thermus thermophilus phage IN93 DNA, complete genome) position: , mismatch: 1, identity: 0.975

ccccaggggaggggaggaggccaggcaaaaggtgctcacc	CRISPR spacer
ccccaggggaggggaggaggccagacaaaaggtgctcacc	Protospacer
************************.***************

49. spacer 2.17|53386|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 1, identity: 0.972

tgaggagggtcgtcttccccgtgcggggcggtccca	CRISPR spacer
tgaggagggtcgtcttccccgtgcggggcggcccca	Protospacer
*******************************.****

50. spacer 2.17|53386|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_017590 (Thermus thermophilus JL-18 plasmid pTTJL1802, complete sequence) position: , mismatch: 1, identity: 0.972

tgaggagggtcgtcttccccgtgcggggcggtccca	CRISPR spacer
tgaggagggtcgtcttccccgtgcggggcggcccca	Protospacer
*******************************.****

51. spacer 2.17|53386|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR027519 (Thermus thermophilus isolate TTHNAR1 plasmid 3, complete sequence) position: , mismatch: 2, identity: 0.944

tgaggagggtcgtcttccccgtgcggggcggtccca	CRISPR spacer
tgaggagggtggtcttccccgtgcggggcggcccca	Protospacer
********** ********************.****

52. spacer 2.18|53458|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_004462 (Thermus thermophilus phage IN93, complete genome) position: , mismatch: 2, identity: 0.944

aaggtgggcgagttcgtggtgccctcgggggccacg	CRISPR spacer
aaggtgggcgagtttgtggtgccctcgggggccact	Protospacer
**************.********************

53. spacer 2.18|53458|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to AB063393 (Thermus thermophilus phage IN93 DNA, complete genome) position: , mismatch: 2, identity: 0.944

aaggtgggcgagttcgtggtgccctcgggggccacg	CRISPR spacer
aaggtgggcgagtttgtggtgccctcgggggccact	Protospacer
**************.********************

54. spacer 1.15|41102|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to MH673671 (Thermus phage phiKo, complete genome) position: , mismatch: 3, identity: 0.919

tgtcccccgtctgggtgatgggctgagtgtcctccag	CRISPR spacer
tgtcccccgtttgggtgatgggctgggtgtcctccaa	Protospacer
**********.**************.**********.

55. spacer 3.3|104114|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_004462 (Thermus thermophilus phage IN93, complete genome) position: , mismatch: 3, identity: 0.923

ccgccatccccgtggtggggccggtcctcgcggcggccg	CRISPR spacer
ccgccatccctgtggtggggcccgtcctcgcggcggcca	Protospacer
**********.*********** ***************.

56. spacer 3.3|104114|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to AB063393 (Thermus thermophilus phage IN93 DNA, complete genome) position: , mismatch: 3, identity: 0.923

ccgccatccccgtggtggggccggtcctcgcggcggccg	CRISPR spacer
ccgccatccctgtggtggggcccgtcctcgcggcggcca	Protospacer
**********.*********** ***************.

57. spacer 1.2|40154|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NC_004462 (Thermus thermophilus phage IN93, complete genome) position: , mismatch: 4, identity: 0.892

tggtggaaggagaaggagggcgtatgcctaagcggaa	CRISPR spacer
ggggcgaaggggaaggagggcgtatgcctaagcggaa	Protospacer
 **  *****.**************************

58. spacer 1.2|40154|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to AB063393 (Thermus thermophilus phage IN93 DNA, complete genome) position: , mismatch: 4, identity: 0.892

tggtggaaggagaaggagggcgtatgcctaagcggaa	CRISPR spacer
ggggcgaaggggaaggagggcgtatgcctaagcggaa	Protospacer
 **  *****.**************************

59. spacer 1.14|41029|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.784

cggcagcccaggtggtcaacgccatcgggagcaccta	CRISPR spacer
tcgcagcccaggtgttcatcgccatcgggttcgcgta	Protospacer
. ************ *** **********  *.* **

60. spacer 1.14|41029|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.784

cggcagcccaggtggtcaacgccatcgggagcaccta	CRISPR spacer
tcgcagcccaggtgttcatcgccatcgggttcgcgta	Protospacer
. ************ *** **********  *.* **

61. spacer 1.14|41029|37|NZ_AP019802|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

cggcagcccaggtggtcaacgccatcgggagcaccta	CRISPR spacer
tcgcagcccaggtgttcatcgccatcgggtttgcgta	Protospacer
. ************ *** **********  ..* **

62. spacer 3.3|104114|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 10, identity: 0.744

ccgccatccccgtggtggggccggtcctcgcggcggccg	CRISPR spacer
gtggggactacgtggtggggcccgtcctcgcggcggcca	Protospacer
 .*  . *. ************ ***************.

63. spacer 3.3|104114|39|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 10, identity: 0.744

ccgccatccccgtggtggggccggtcctcgcggcggccg	CRISPR spacer
gtggggactacgtggtggggcccgtcctcgcggcggcca	Protospacer
 .*  . *. ************ ***************.

64. spacer 2.15|53245|37|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 11, identity: 0.703

cccgaggttccggggggcaccaggctgccgtccggca	CRISPR spacer
tcctgctcggcgaggggcaccaggctgccgtcgggcg	Protospacer
.** .  .  **.******************* ***.

65. spacer 2.15|53245|37|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 11, identity: 0.703

cccgaggttccggggggcaccaggctgccgtccggca	CRISPR spacer
tcctgctcggcgaggggcaccaggctgccgtcgggcg	Protospacer
.** .  .  **.******************* ***.

66. spacer 2.17|53386|36|NZ_AP019802|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 11, identity: 0.694

tgaggagggtcgtcttccccgtgcggggcggtccca	CRISPR spacer
gcgccaccgtcgtcttccccgtgccgggcggaccgg	Protospacer
  .  *  **************** ****** ** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36084 : 81154

Staphylococcus_phage(33.33%)

integrase,transposase

attL 76268:76327|attR 81096:82288

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143590208.1\|36084_37185_+\|transposase	transposase	NA	NA	NA	NA
WP_143590208.1\|38874_39975_-\|transposase	transposase	NA	NA	NA	NA
WP_011174371.1\|41561_41846_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_172967314.1\|41842_42820_-	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_011174369.1\|42810_43395_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_143591872.1\|43550_44744_+	WYL domain-containing protein	NA	NA	NA	NA
WP_143591873.1\|44761_47062_+	hypothetical protein	NA	NA	NA	NA
WP_143591874.1\|47823_48738_+	hypothetical protein	NA	NA	NA	NA
WP_143591875.1\|48704_51158_+	CRISPR-associated helicase Cas3'	A7WK98	Acidianus_filamentous_virus	2.4e-05	23.1
WP_143591876.1\|51157_51952_+	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_011228296.1\|53684_54638_-\|transposase	IS110-like element IS1000B family transposase	A0A1S7J231	Thermus_phage	3.0e-28	36.4
WP_143591877.1\|54895_55216_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_143591878.1\|55208_55829_+	DUF3386 family protein	NA	NA	NA	NA
WP_143591879.1\|55825_56731_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011229087.1\|56834_57860_+	iron ABC transporter permease	NA	NA	NA	NA
WP_024118782.1\|57852_58632_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.6e-11	25.7
WP_011229089.1\|58621_58936_+	hypothetical protein	NA	NA	NA	NA
WP_024118783.1\|58947_59862_+	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_143591880.1\|59858_60905_+	hypothetical protein	NA	NA	NA	NA
WP_143591881.1\|60952_62137_+	c-type cytochrome	NA	NA	NA	NA
WP_143591990.1\|62587_63352_-	diguanylate cyclase	NA	NA	NA	NA
WP_143591882.1\|63415_63904_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_143591883.1\|63952_64831_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_172967315.1\|64945_65530_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_143591885.1\|65438_66842_+	redoxin domain-containing protein	NA	NA	NA	NA
WP_143591886.1\|66829_68071_+	HD domain-containing protein	NA	NA	NA	NA
WP_143591887.1\|68000_68564_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_143591888.1\|68560_69178_-	anti-sigma factor	NA	NA	NA	NA
WP_143591889.1\|69167_69731_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_024118791.1\|69846_70302_+	hypothetical protein	NA	NA	NA	NA
WP_143591890.1\|70431_72111_-	ribonucleoside-diphosphate reductase subunit alpha	Q2XUY0	environmental_halophage	4.7e-178	54.8
WP_024118792.1\|72121_73096_-	ribonucleotide-diphosphate reductase subunit beta	M4I0Q2	Staphylococcus_phage	5.2e-76	45.2
WP_143591891.1\|73076_73478_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_008633599.1\|74091_74334_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_008633600.1\|74314_74770_+	PIN domain-containing protein	NA	NA	NA	NA
WP_124105774.1\|74826_75261_+	ParA family protein	NA	NA	NA	NA
WP_143591892.1\|75257_75629_+	ATPase	NA	NA	NA	NA
WP_143591893.1\|75625_76222_-	HNH endonuclease	NA	NA	NA	NA
76268:76327	attL	NA	NA	NA	NA
WP_143590208.1\|76268_77369_-\|transposase	transposase	NA	NA	NA	NA
WP_143591894.1\|77622_78588_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	1.0e-15	30.0
WP_143591895.1\|78590_79067_-	PIN domain-containing protein	NA	NA	NA	NA
WP_008633605.1\|79038_79215_-	hypothetical protein	NA	NA	NA	NA
WP_143590208.1\|80053_81154_+\|transposase	transposase	NA	NA	NA	NA
81096:82288	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP019801

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP019802

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection