CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	17 crisprs	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041614_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_1

10197-10311

Orphan

Consensus_repeat	Method
TTTGCAGACGATAAAAATATTGTTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_1

>merge|NZ_CP041614|1|10197-10311|CRISPRCasFinder
TTTGCAGACGATAAAAATATTGTTGCCACTTGCAGTTTACAGACATCTTCCGTGATTGCTGTTATCAACTACAACTATCAATTGCCTTTTGGAGACGATAAAAATATTGTTGCCA

>NZ_CP041614|1|1|10197-10311|CRISPRCasFinder
TTTGCAGACGATAAAAATATTGTTGCCA	CTTGCAGTTTACAGACATCTTCCGTGATTGCTGTTATCAACTACAACTATCAATTGCCT
TTTGGAGACGATAAAAATATTGTTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144044303.1\|13237_15307_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP041614.1\|WP_144048758.1\|8561_8945_+\|cytochrome-C	unknown	unknown	unknown
NZ_CP041614.1\|WP_143564343.1\|3959_6380_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP041614.1\|WP_144048759.1\|22472_22706_-\|sulfurtransferase-TusA	unknown	unknown	gnl\|CDD\|178967
NZ_CP041614.1\|WP_143564341.1\|1423_2524_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP041614.1\|WP_143564342.1\|2860_3958_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP041614.1\|WP_143564344.1\|7287_8514_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239028
NZ_CP041614.1\|WP_143564346.1\|9343_10081_-\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|212112
NZ_CP041614.1\|WP_143564348.1\|11186_11969_-\|5-oxoprolinase-subunit-PxpB	unknown	unknown	gnl\|CDD\|224960
NZ_CP041614.1\|WP_144048757.1\|6955_7285_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NZ_CP041614.1\|WP_144044307.1\|22001_22439_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP041614.1\|WP_144044304.1\|15318_16224_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP041614.1\|WP_144044305.1\|16404_17004_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP041614.1\|WP_143564345.1\|8946_9297_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP041614.1\|WP_143564340.1\|15_1404_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP041614.1\|WP_144044309.1\|23349_23850_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP041614.1\|WP_144044306.1\|17116_17707_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144044308.1\|22873_23353_-\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_CP041614.1\|WP_143564349.1\|12118_13186_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144044303.1\|13237_15307_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP041614.1\|WP_143564348.1\|11186_11969_-\|5-oxoprolinase-subunit-PxpB	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.2182e-82
NZ_CP041614.1\|WP_143564343.1\|3959_6380_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP041614.1\|WP_144048759.1\|22472_22706_-\|sulfurtransferase-TusA	gnl\|CDD\|178967	PRK00299, PRK00299, sulfurtransferase TusA.	3.27882e-48
NZ_CP041614.1\|WP_143564341.1\|1423_2524_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	0
NZ_CP041614.1\|WP_143564342.1\|2860_3958_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	8.43046e-123
NZ_CP041614.1\|WP_143564344.1\|7287_8514_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239028	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). .	2.49047e-118
NZ_CP041614.1\|WP_143564346.1\|9343_10081_-\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|212112	cd10801, LamB_YcsF_like_1, uncharacterized proteins similar to the Aspergillus nidulans lactam utilization protein LamB. This mainly bacterial subfamily of the LamB/YbgL family, contains many well conserved uncharacterized proteins. Although their molecular function remains unknown, those proteins show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	1.05729e-123
NZ_CP041614.1\|WP_144048757.1\|6955_7285_+\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.36317e-17
NZ_CP041614.1\|WP_144044307.1\|22001_22439_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	2.64333e-13
NZ_CP041614.1\|WP_144044304.1\|15318_16224_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP041614.1\|WP_144044305.1\|16404_17004_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	4.74474e-114
NZ_CP041614.1\|WP_143564345.1\|8946_9297_+\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.54953e-19
NZ_CP041614.1\|WP_143564340.1\|15_1404_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041614.1\|WP_144044309.1\|23349_23850_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.53224e-10
NZ_CP041614.1\|WP_144044308.1\|22873_23353_-\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.02408e-76
NZ_CP041614.1\|WP_143564349.1\|12118_13186_+\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	7.47153e-35

>NZ_CP041614.1|WP_143564346.1|9343_10081_-|5-oxoprolinase-subunit-PxpA
MKLNPKGYPIDLNADLGEGGTNDEALLQLITSANIACGGHAGDQSSMQTTVKIALASGVNIGAHPSFPDRENFGRQPMIISDQELSTSLNQQIGSLKAVCSSLGAKLFHVKPHGALYNQAAFSERLGQILINAIKRIDPSLKLMILAASPLVPLARQHGLTVIEEAFADRTYLADGSLAPRTMPGAIIEDDNQSIKQVEQVLANRPLTTLDGSMLQLKADSICLHGDNEHALRFAQKIAEYLKNK
>NZ_CP041614.1|WP_143564345.1|8946_9297_+|c-type-cytochrome
MKKLIGIAFIFLISIVAVGVSAAEPQQGNIEQGRQLANTRCEACHGPVMLSQAGLFPSLRGQKQAYLYKQLKDFKSGDRADINMQAQAGGLTDEQMRDLTFYYSLLTPINLNTKVK
>NZ_CP041614.1|WP_144048758.1|8561_8945_+|cytochrome-C
MHAQAVELSDTNTSIAKIDYPVDAKSGLIKAPGWELVNGQCNACHSSLIVPQNHGDRDFWQETIQWMVDTQGLWDLSDTWEPTLDYLSTYYNQVDIDMTLFRRKPIDKDSLPPSQKADIGTVIKRDE
>NZ_CP041614.1|WP_143564344.1|7287_8514_+|molybdopterin-dependent-oxidoreductase
MSLDRRAFIKGAIATSAVAILPVKWVFAGNMPLGMASLDISSLTWSKAEDLPDYFTVLNTKPLNAYPAEHMLDKAVTPGDVAFIRWNGQMPDFKAMDLKTWTFKVDGESVKTPKTYTLDELKQRFKHHTRRLVLECGGNSRVNFFPGTKGNQWNNAAVYCSEWTGVLVRDVLYDCGIKEDAVYTGHHGIDKHLSGHGEAISRGVPIDAALSDDALIAWSMNGEDIPYMHGYPLRIVFGGRPASVSQKCAVGISVRNKLHDGHKMAAPAYQVPKYPVAPGEKVDNKDFEIIEQMIVKSLITFPESGTEMKLGKKTVLRGHAWAGLREVIKVEVSYDYGTRWHVVELEKPKNATAWQQWQTELDLPEQGYYEIWARATDSEGDTQPVVQPQWNPKGYMFNGCHRIAVRVV
>NZ_CP041614.1|WP_144048757.1|6955_7285_+|cytochrome-c
MFNLRSAEPALSLTLSSLVMLAVLASSAAQAGESPQLLNMCIACHGTVGTNDFPNIADLRWQNQEYLVKQLQAFKSGERSDKTMSKVAQLLTDEDMQSLAQYFYTGENK
>NZ_CP041614.1|WP_143564343.1|3959_6380_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEVVITIHVDGSVSVKDDGRGIPVEIHPEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRNGKLYEQFYTSGEPDAPIKEIGDATSTGTELRFWPSHETFTTNIEFHFDILVKRVRELSFLNSGVGIRLIDERDNRDEFFQYQGGISAFVDYLNVNKTPVNKDVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPNEARLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKKGRQEQYLKDELALTEFLTNLALDGGELHSSADAPAISGAPLEKLVYQYREVETIFERLNLRYPTLLTERMLYHPALDAEVLADEAKVKLWCDAFVADLTEKESGGVIYKAEPIMDPERKVYLPNVHIRKHGIDTSYLFTYEFLNSSDYERMAKLAAALEGLIVEGGYIKRGERIKEISTFVEALNWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAIGADQLFTCLMGDQVEPRRNFIEENALNVANLDV
>NZ_CP041614.1|WP_143564342.1|2860_3958_+|DNA-replication/repair-protein-RecF
MSLTRLHIETFRNIVSAQLLPAEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQHSDDKLTLFANLNVQDKESKIGLRRFRSGETEVKIDGDKVKRLSTLAESLPIQVITPESFALLFEGPKSRRQFIDWGAFHCDKTFHSAWVNVKRILKQRNQLLKNEASYDQIQYWDRELVRYSEVVTDIRTQYVNSLNELLKGIIEEFLPQVDVKISFTRGWDSKTDYAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPIQDALSRGQLKLLVCALRIAQGKLLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLNTPPSKVFHVEQGRVTVIEQPTRE
>NZ_CP041614.1|WP_143564341.1|1423_2524_+|DNA-polymerase-III-subunit-beta
MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHTLKMTGTDLEVELVGQVQLEGDVLEGRTTVPAKKLLDIVKSLPDQVEIKIEQQENRLLLRSGRSRFTLATLPAEEYPNVEAFESDIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETDGNVLRAIATDGHRLALSHRQIEATLPEKQVIVPRKGVVELQRLFEGEDLDVTIAIGDNAIRATTSSAVLTSKLVDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRVQLENNLIKITANNPEQEEAEEILDVEYDNTPLEIGFNVSYLLDVLNNLPSDDVRITLIDGNSSALIENHIEENSMYVVMPMRL
>NZ_CP041614.1|WP_143564340.1|15_1404_+|chromosomal-replication-initiator-protein-DnaA
MAVTLWQQCLGRLQDELSSQQFSMWIRPLQAEMDGDTLVLYAPNRFVLDWVRDKYINIINQFFTEQLGSDAPKLRFDIGSKPAAPRPVQATPAMAPPRVQMNTRPTKTSFNVNMPEPAITANHRSNINPAYQFENFVEGKSNQLGKAAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNAIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQVILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGVNLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREENHDIKEDYANLIRTLSS
>NZ_CP041614.1|WP_143564348.1|11186_11969_-|5-oxoprolinase-subunit-PxpB
MSDDLLPKLFRLGEKALVLDCASLSGSNSKLQIQRQIWHIADLCKTSGDFDDIVPGNNNLTLFFKDSKKISFWSNQINKLWTNKQVQDKPSKLIQIPVQYGGEYGPDLNAVAEYHKLTPREVIAIHTSTQYSVLFLGFQPGFPYLDGLDKQLFTPRLATPRLSIPAGSVGIGGEQTGIYPAQSPGGWQLIGRSALTLFDSSSEHGALLKPGDRVEFVSVRSILDPSISEQPILDQAISDRSNPEKAISKQAKTSHKESSR
>NZ_CP041614.1|WP_143564349.1|12118_13186_+|HDOD-domain-containing-protein
MVIKLFNKLFNIRDKTSISEPKGFRQDTSVQDKLADTSAKPQDPTATEEVLTSDSVDVAALFYSLLFPTKSNDTGGIANNLEKAVMDDVENALMSPQDVADKVLKLPSKLTELDRRLKDESVDIKVLVDEIHDDPVLSVEVIKLCNSPLFKRGDREVTSLQQAFVQLGRDQLRRLVTTCMVREMIVIKPIYYRRFGLQIWRHSMQVAYLSSELAADHSDQDPDTAFLLGLLHDVGKIAIFKMLLDEFQIAEPGEQPSSWLFRQVMTTKSLSLSALLAQCWHLPVCFESSLSQLANLDSTPTEPLAALVWRANLISECSMLYHGKKLDEPCLARLLIDANLSRDEFEVLHEKLKEV
>NZ_CP041614.1|WP_144044303.1|13237_15307_-|glycine--tRNA-ligase-subunit-beta
MNFENLLIEIGTEELPPKSLRKLAESFLSNFTDELKKAELSFETAVWHAAPRRLALSVNQLATAQADKVVEKRGPAVAQAFDADGNPTKAAMGWARGNGITVEQASRLKTDKGEWLLHQAKVVGVETKSLISAMAQRALDKLPIPKPMRWGSNKTQFIRPVHTVTMLLGSEIVAGELLGIKSDRVIRGHRFMGQASFELDHADNYLSALKEKGKVLADYEARKAIIKTDAEAAAAEIGGIADLENELLEEVCSLVEWPVVLTASFEEKFLDVPAEALVYTMKGDQKYFPVFDKAGQLLPNFIFVTNIVSKDPQVIISGNEKVVRPRLADAEFFFENDKKQTLEDRLVSLETVVFQKQLGTIKQRVERISEIAGFIATSIDANAEEASRAGLLSKSDLMTNMVMEFTDLQGTMGMHYARLNGETEAVALALQEQYKPKFSGDTVPAAAISVCVALAEKLDTLVGIFGIGQAPKGAADPFALRRAAIGILRICVENNLQLDLVDLIAKAQALHGSNLSNDTTAEQVLEFFMNRFRAWYQDQGVSVDVILAVLARRPTSPADFDSRIKAVSHFRTLEQALALAAANKRVSNILAKVEGDIPANIDASLLTENAEKALAEKLKDLQPKLAPLFASANYQEALALLADLRESVDTFFEDVMVMVDDEALKNNRLALLSSLRDQFLHAADISLLQ
>NZ_CP041614.1|WP_144044304.1|15318_16224_-|glycine--tRNA-ligase-subunit-alpha
MTTKHDVKTFQGFIMTLQEYWAQQGCAIVQPLDIEVGAGTFHPQTFLRSLGPEPMSSAYVQPCRRPTDGRYGDNPNRLQHYYQFQVVLKPSPSNIQELYLGSLEAVGVDMGVHDVRFVEDNWESPTLGAWGLGWEVWLNGMEVSQFTYFQQVGGIECSPVTGEITYGLERLAMYIQEVDSVYDLVWTDGPMGKIMYGDIFHQNEVEQSTYNFEHADVDVLFKLFDDCEKACERLLSLEKPLPLPAYEQVMKASHAFNMLDARHAISVTERQRYILRVRTLAKGVAQSYYQAREALGFPMCK
>NZ_CP041614.1|WP_144044305.1|16404_17004_+|DNA-3-methyladenine-glycosylase-I
MDKKRCGWVGDDQIYLDYHDYVWGRPVYDNQELFAKLCLDGQQAGLSWITILKKQKTYEAAFANFDPAVIAKFDDAKVAELLQDKGIVRNRLKVNSIIKNARGYMANFSDTKGEQGNDFSEFLWSFVGGSPIVNHFEAMEEIPVQTPESVAMSKALKKMGFNFVGPTICYAFMQAVGMVNDHATYCFCYDKCNKEEISS
>NZ_CP041614.1|WP_144044306.1|17116_17707_-|hypothetical-protein
MRKIEYHRQSSDVSTDISLSFMLSKSLIPLEIYKSNNKFPLTNSKMFFSEKNDIYKSMNIRKVVVDSNYIKQLLTEENSEELKSLVGIKPLSSDFELIKFMFKFEIDDLSFFSSLDDFKLAMMSKIIKSTFIPFNGNILEFKLDKGYQGFQFGETDLNKHIRVNVYSEKMLLELTFNEYTQQEIDFFLSQIKLIEQ
>NZ_CP041614.1|WP_144044307.1|22001_22439_-|MOSC-domain-containing-protein
MSTLIAIGFKPIKQKPMTLVTKANVTCNHGVEQDFFGRPGKRQVTVMSKEQWQTVCAELNTMLPWTTRRANLLVEGLSFTPAHVGKILQIGELKLEITGETDPCKKMEIAHAGLEAALRPDWRGGVTCRVLNDAEINTGDSVLLS
>NZ_CP041614.1|WP_144048759.1|22472_22706_-|sulfurtransferase-TusA
MNQADHHLDAIGLRCPEPVMMVRKSVRKMEAGETLLIVADDPATTRDIPSFCEFMDHKLLSSSTDKTPYQYLIQKGL
>NZ_CP041614.1|WP_144044308.1|22873_23353_-|Cys-tRNA(Pro)-deacylase
MTPAIDALKKAKVEFTIHEYHHEPGCDSYGLEAAEKLGLQLEQVFKTLVVQLDGKQLVVAIIPVASKLSMKLIAKAANAKKAVMANADDVQRSTGYKLGGVSPIAQKKALKTYIDISAENHPQIYVSGGQRGLDIELAPEQLQQMTKAQVSPLTSELKS
>NZ_CP041614.1|WP_144044309.1|23349_23850_-|GNAT-family-N-acetyltransferase
MELVLLADKPKAIPQIAKWYSDEWGHISNDSSRSTSALETKLNGYLNTDKLPLMLLATVNNQMVATAQLRFQEMTTYPETSHWLGGVYVDKAHRGKAIGQSLINGILDLARRHQVSELYLQTEDHSGGLYKKMGWKAVEQVTYHGVKVLVMKLKVNERVCEEQKRA

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Crispr_ID: NZ_CP041614_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_2

224723-224802

Orphan

Consensus_repeat	Method
TCCAGTTCGGCTTGTAACTCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_2

>merge|NZ_CP041614|2|224723-224802|CRISPRCasFinder
TCCAGTTCGGCTTGTAACTCTGGAATAGTTATTTCTGAAATGTTTATACTCAGATTTTCCAGTTCGGCTTGTAACTCTGG

>NZ_CP041614|2|2|224723-224802|CRISPRCasFinder
TCCAGTTCGGCTTGTAACTCTGG	AATAGTTATTTCTGAAATGTTTATACTCAGATTT
TCCAGTTCGGCTTGTAACTCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144044449.1\|214854_215916_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213028
NZ_CP041614.1\|WP_144048770.1\|218165_221354_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP041614.1\|WP_144044446.1\|209983_212530_-\|peptidase-M14	unknown	unknown	gnl\|CDD\|349457
NZ_CP041614.1\|WP_144044457.1\|227156_228140_-\|heme-A-synthase	unknown	unknown	gnl\|CDD\|367131
NZ_CP041614.1\|WP_144044461.1\|230999_231569_-\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|235341
NZ_CP041614.1\|WP_144044459.1\|229801_230020_+\|DUF2909-family-protein	unknown	unknown	gnl\|CDD\|378564
NZ_CP041614.1\|WP_144044460.1\|230127_231003_-\|cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|238834
NZ_CP041614.1\|WP_144044465.1\|235309_235927_-\|repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP041614.1\|WP_144044448.1\|213495_214833_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP041614.1\|WP_144044453.1\|222204_224304_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP041614.1\|WP_144044464.1\|234764_235277_-\|cell-division-protein	unknown	unknown	gnl\|CDD\|380271
NZ_CP041614.1\|WP_144044462.1\|231571_233200_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_CP041614.1\|WP_144044450.1\|215964_217005_-\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	unknown	unknown	gnl\|CDD\|234828
NZ_CP041614.1\|WP_144044463.1\|233209_234331_-\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224537
NZ_CP041614.1\|WP_144044458.1\|228139_228706_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144044456.1\|226179_227094_-\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NZ_CP041614.1\|WP_144044454.1\|224344_224707_-\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP041614.1\|WP_144044451.1\|217078_217915_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|214534
NZ_CP041614.1\|WP_144044452.1\|221560_222136_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP041614.1\|WP_144044447.1\|212781_213360_+\|Fe-S-biogenesis-protein-NfuA	unknown	unknown	gnl\|CDD\|183027

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144044449.1\|214854_215916_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213028	cd10973, CE4_DAC_u4_5s, Putative catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases which consist of a 5-stranded beta/alpha barrel. This family contains many uncharacterized bacterial polysaccharide deacetylases. Although their biological functions remain unknown, all members of the family are predicted to contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily.	2.77581e-65
NZ_CP041614.1\|WP_144048770.1\|218165_221354_-\|PAS-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.74456e-92
NZ_CP041614.1\|WP_144044446.1\|209983_212530_-\|peptidase-M14	gnl\|CDD\|349457	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup. Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	2.03809e-84
NZ_CP041614.1\|WP_144044457.1\|227156_228140_-\|heme-A-synthase	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	1.16376e-81
NZ_CP041614.1\|WP_144044461.1\|230999_231569_-\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|235341	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional.	1.57196e-108
NZ_CP041614.1\|WP_144044459.1\|229801_230020_+\|DUF2909-family-protein	gnl\|CDD\|378564	pfam11137, DUF2909, Protein of unknown function (DUF2909). This is a family of proteins conserved in Proteobacteria of unknown function.	3.98639e-11
NZ_CP041614.1\|WP_144044460.1\|230127_231003_-\|cytochrome-c-oxidase-subunit-3	gnl\|CDD\|238834	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.	1.53846e-86
NZ_CP041614.1\|WP_144044465.1\|235309_235927_-\|repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	8.71542e-113
NZ_CP041614.1\|WP_144044448.1\|213495_214833_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	7.57804e-145
NZ_CP041614.1\|WP_144044453.1\|222204_224304_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP041614.1\|WP_144044464.1\|234764_235277_-\|cell-division-protein	gnl\|CDD\|380271	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA. A three-gene cassette encoding ImuA, ImuB, and ImuC (""inducible mutagenesis"") is induced by DNA damage, is capable of DNA synthesis across DNA damage lesions, and consequently is associated with mutagenesis. This family, ImuA (previously misnamed SulA in Pseudomonas putida) shows some homology to SulA itself and to RecA. ImuB resembles Y-family polymerases but may be catalytically inactive. ImuC is a C-family polymerase, and catalytically active.	6.16077e-24
NZ_CP041614.1\|WP_144044462.1\|231571_233200_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_CP041614.1\|WP_144044450.1\|215964_217005_-\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	9.96693e-173
NZ_CP041614.1\|WP_144044463.1\|233209_234331_-\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	9.38859e-70
NZ_CP041614.1\|WP_144044456.1\|226179_227094_-\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	6.39347e-149
NZ_CP041614.1\|WP_144044454.1\|224344_224707_-\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.7479e-68
NZ_CP041614.1\|WP_144044451.1\|217078_217915_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|214534	smart00138, MeTrc, Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.	6.5597e-103
NZ_CP041614.1\|WP_144044452.1\|221560_222136_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	6.97778e-47
NZ_CP041614.1\|WP_144044447.1\|212781_213360_+\|Fe-S-biogenesis-protein-NfuA	gnl\|CDD\|183027	PRK11190, PRK11190, iron-sulfur cluster biogenesis protein NfuA.	4.35582e-154

>NZ_CP041614.1|WP_144044454.1|224344_224707_-|response-regulator
MKKILAVDDSASMRQMVCFTLKTAGFDVTEACNGDEALKVAQQGEYDLVISDVNMPIMDGLTLIRNLRTLPNYKFTPLLMLTTESGTDKKQEGRSAGATGWIVKPFNPDQLLATVRKVLG
>NZ_CP041614.1|WP_144044453.1|222204_224304_-|chemotaxis-protein-CheA
MEIDLSQFSQVFFEESLEGLDAMESELLNLDVNKPDEEAINTIFRAAHSIKGGSATFGFSQVANYTHLLETLLDEIRDGRRQMTSEHQDMLLLSVDLLRNMFDALMRKIDFDDPLLAQLEKQFTIEIDKGTKGSVSEELDSSSDTLAEQETPGLLRWVIDFQAGIDILRCGNDPYLMFNELRQLGELSVCLAGHSSPEFNDIDPEACYLNWQLELITDQPLERLKEVFEWVEDECTINYSSSPVINDNTEQDDELSNRDPAEAASSQEQQGSEAVQRELESNKVDEAQGPKPKAVSQAKTPETSSIRVSIDKIDLLINMVGELVITQAMLGQIGQQDKIDEESLISLKQGLEQLATHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVNLVLKGEDTELDKTVMEKIVDPMVHLVRNSLDHGLETPEERLAKGKSEAGTITLNAFHQGGSIIIEIIDDGAGLDTDRILRKAREKGLVGQEEELSTEAIHKLIFKPGFSTADAVSDLSGRGVGMDVVRRNINELNGSIELKSSQDKGSRFTIRLPLTLAILDGQLVRVGKHIYVVPLVSIHESLQVEPSKINRLSDGHELIQLRNEYLPVIKVYQEFCHTSDAKEIKDGLVMVVDSNNEKIGLLVDELLSQQQVVIKSLEDNYNRVPGVSGATILGDGTVALIIDVTGLVSMAGIASMKEDAA
>NZ_CP041614.1|WP_144044452.1|221560_222136_-|purine-binding-chemotaxis-protein-CheW
MTEQTQSMQPQYEQGIKQDNDEDSQQYLTFIMANEEYGVEILSVQEIRGWESTTVIPNAPSHVKGVINLRGTIVPIIDLRQRFGIEVLDYGATTVVIVVKVAMANEHKVIGIVVDAVSDVFSVNNDDVRDAPNFGEDTDLSFIKGLTNAGEKMVILLDINRLLGSEILPEAEQLSNLINTLDARQQQAVNA
>NZ_CP041614.1|WP_144048770.1|218165_221354_-|PAS-domain-containing-protein
MFEQALTEVSNALISNEAPKFSDLSLPGWELLTSRIDELYQKRQRDETSLKALDICNANVMMADADHNITYLNDAVNVMMTKNEKTLQTELASFDVKKLVGQNIDIFHKNPAHQRRMLDSLTTTYETTIQVAGLNFNLIANPIFNDGVRTGTVVEWQDITAKLAREVEEKQQAADTNRIKQALDVCKANVMMADADYNIIYFNESLNEMLSDNERTLQQSLAKFDMKTLMGTNIDIFHKNPAHQRGMLDRLTSTYATSIQVSGLTFELIATPVFDDGERTGTVVEWQDVTAKLAKEKEEAQQAAETGRIKQALDVCKANVMMADADYNIIYFNDSLNEMLGENEKTLQQSLKKFDMKTLMGSNIDIFHKNPAHQRGMLDKLTETYATSIQVSGLTFELIATPVFDNGVRTGTVVEWQDVTAKLAKEKEEQLQAAETGRIKQALDVCKANVMMADADYNIIYFNESLNEMLSENEKNLKKSLNRFDMRTLMGSNIDIFHKNPAHQRGMLDRLTETFETNIEVSGLTFGLIATPVFDNGERTGTVVEWQDLTVKLAREAEEQQLAAENARIKQALDNVSANTMVADADLNIIYMNNAVGNMFRNAQSDIVKDLPNFDANNLMGVNIDDFHKNPAHQRGLLGGLTSTYSSQLLVGGRTFKVVANPIKDDNGERIGTVVEWTDRTAEVAIEHEIDTIISSAAAGDLSHRVSTEGKDGFFLNLSNGLNRLVGIADNVISDVVNMFDGLAKGDLTRQINGEYEGQFGKLQTDANATVSRLTEVLGGINESANTVTSGAEEIAQGNADLSQRTEEQAASLEETASSMEEMTATVTQSAQNATLANELAQEANSKAEHGGKVVEQAVSAMEAINDSSKRISDIIGVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKELIRDSVGKVTDGTQLVNQSGETLEDIVQAVTKVADMISQISIASDQQSAGIQEVNKAISQMDEMTQQNAALVEQVSAAGEAMADQARNMKTQLGFFQTSGNTSSGMASAPLALVSGDTHGNLSISKEEWNEF
>NZ_CP041614.1|WP_144044451.1|217078_217915_-|methyltransferase-domain-containing-protein
MTQQDFDFIQSLAYQETGIVLPERKKHMVYSRLSRRLRHLGLKNFNQYCDHVQSEPGELMNFVNALTTNLTAFFREEHHFDYLDKEIAPLWRRRRNKRLRVWSSACSTGEEPYSIAMTLADHFSGAEWDLKILATDLDTNVLSKAAKGCYAEDSITGLPERYREKYIKTTPNGILMKQSIQKKIHFKQLNLLQKWPMTGPFDVIFCRNVLIYFDNETKAKIIAKFRKLLAPDGLLFIGHSETLTNISDEFELIGQTMYQPLRGGHAKIHGERKKALTG
>NZ_CP041614.1|WP_144044450.1|215964_217005_-|chemotaxis-specific-protein-glutamate-methyltransferase-CheB
MISVLVIDDSPLVRQLLSHLLNDADDIKVVATAEDPYEARNLIKKFNPDVLTLDIEMPKMDGIAFLRNIMKLRPMPVIMVSTLTAKGAAVTLEALSIGAVDFISKPKSDLTNQLMGYKQELIDKVRLAYKSNARPKSLSAPTIKPLNGEMFSNRLIAIGASTGGTEAIQSVLMRMPSNTPPVVIAQHIPAAFSTSFAKRLNNNCAMKVIEAQGGEQLKPGTAYLAPGSKHMIIERKGGLLFTKLVDSDPVNRHKPSVDVLFNSVAESAAKSTIGIILTGMGKDGAKGLLNLKNKGSYTIAQDEASSVVWGMPGAAVDLDAHHEQMHLDKIPQKLLFLLKTENSKAS
>NZ_CP041614.1|WP_144044449.1|214854_215916_+|polysaccharide-deacetylase-family-protein
MFKNVMITLLVLFSLSFQAFTAQAAVILQYHHVSEETPAITSVTPAQFKEQMQYLADNGFIVTPLSQVVDAIRNQKAIAENTVVITFDDGYKSIAETAHPILKEYGFPYTLFVSIEPIKAKYSEMMSWEELIELSKEGAEIANHSWGHEHLIRKSAGESEAQWMSRIETNILETEAEISKATGQDHKMLAYPYGEYNQALEDMLSRNGFVGLGQQSGAAGAYSSLTALPRFPVAGVYADLASLKVKMHSLNMPVLSITPNDPELKDGNWRPELKISLDMSDIYPHQMMCFIQGQGAKKPLWLSENEFSIRAEFDLPPGRSRYNCTVPSKSKSGYYWFSQAWVRPEDDGSWRKE
>NZ_CP041614.1|WP_144044448.1|213495_214833_-|MATE-family-efflux-transporter
MTPVELIRNKQKNRQLLALALPMILSNITVPLLGLVDTAVVGHLSNAYYLGGVAVGSTIITLILWMLGFLRMATTGLVAQSYGAGDTQAQYKLLLQAGSLALILGLSAVLLQLPILNTALMLTDASLEVQRYTREYFEIRIWSTPFALLNLVLLGWLLGRQQPKAAMWQLIVANLANIILDLLFVLGLGWGVQGAALASVFADMSGFLVALTMVYKQVQKTGGFDFFKLCKSLSLTSYHKLLSLNADIFVRSLCLQIAFAFMTFHGASLGDNTVAANAVLLNLLLLISYALDGIAYYAEAEVGKAYGQRNKTKMREAVTLAWFWSAISAILFTLVFAFGGESIIKMLTNIEEVRSVADEYLFWIVLLPILSFGSYLFDGVYIGAAKGKVMRNSMIISTFGVFFPVWFFLQDNGNHALWAAMSCFMLARSITLTLHYRYKLRDAEF
>NZ_CP041614.1|WP_144044447.1|212781_213360_+|Fe-S-biogenesis-protein-NfuA
MITISDAAQAHFVTLLADQPEGTHIRVFVISPGTATAECGVSYCPPDAVEADDTELEFTGFNAMVDEKSVPFLEDASIDFVTDQLGSQLTLKAPNAKMRKVSSDASLNERIEYVIQSEINPQLASHGGNIMLMEVSEEGVAILQFGGGCNGCSMVDVTLKDGIEKQLLDMFPGELTGVKDITEHQAGEHSYQ
>NZ_CP041614.1|WP_144044446.1|209983_212530_-|peptidase-M14
MFKTGLFLLTLLCSLSLASPVIAADLQKVIPLSNSNLDPVITSPDSFLGYPLGQWHLRHDQVNYYLKQLASDSDKVSIEHTGQSHEARQQLTAVITSSKNQAKLDEILTQRRAVKSGATQDGPLVIWLAYSIHGDEASGAHAALALSYFLASSRDEWVEDLLDEAIVLITPSQNPDGMDRFSTWTNNYRGQTDVSDSNHKEHRQNWPNGRTNHYFADLNRDLLFLRHPETRGRVALFHKWQPHYVGDFHEMGRDRNYFFQPGVPSRTNPATPKTNQALTEKLAHFHRAALDELKQSYFSREAFDDFYYGKGSTYPDINGSVGILFEQASPRGQVQITQNGELRLSQAINNQVATSISSLKGSLELKDELIEYQSEFYQGRDKVLQRGRQTGFLLGAPANRERIEDLTQVLTQHKIKFYYLTETVRQGSQDFAANSSVFIPINQPQKSLLLALFDNSTEFEDPTFYDVSSWNLEHAYHLQMVRNSKLDIDVLSRQAPAKFNFQVNEQAVAVLVNWQQDLAAPMLQALLQDNVTVKFAKKPFIIEVAGKAHKFPAGTLQIPLKQPGISLDEINNKLVKLSKQYPLTLYSVTTSAAISGIDLGSPNFKVIKPIKPLLITGRGTDASEVGELWYYLDRKLAVPVTLIDAGHISKIKLNRYTHVIMAGGTYSSLDEKFSRKLGQFTSDGGTVIAQKGALTWLNKNNLLKSAIKGKRFYKQLFDTRGLSYGDKEKLAARQSIGGAIVELALDPSSPINFGIRGNRLPILKNKAIGLTTSSTPFTVAAKYADEPLLSGYLAKEYQASFSNNPAIVLETRGKGAIVGLADNLMFRNIWLGSEKIYANALYFVPALN
>NZ_CP041614.1|WP_144044456.1|226179_227094_-|protoheme-IX-farnesyltransferase
MAKPLSISVTEPKTNGEPLQWRAYYEMTKPKVVALMLLTVLVGMCLAVPGSVPLQPLIIGMMGIGMMAGAAAAFNHIIDRRIDGLMARTYNRPLPKGRISITKALIFSVSLALLGFALLYTLVNELTAWLTFASLVGYAIIYTAYLKRATPQNIVVGGLAGAMPPLLGWTAITGEFHGHALLLVIIIFTWTPPHFWALAIHRKAEYAKVDIPMLPVTHGVEFTKTCILLYTLLLAIACLLPVIVGMCGPIYLVGSTILSCAFIYKAWELKYDDKPGLAMQVFRFSIYHLMILFILLLVDHYLWV
>NZ_CP041614.1|WP_144044457.1|227156_228140_-|heme-A-synthase
MGIQNLLRITLVFTLCVILMGAYTRLSDAGLGCPDWPGCYGMMKVPSQHSELMQAQDAFPGQKIEPKKAWLEMIHRYIAGALGLLVLVIFILCLKKLDAPKKLPTLIAILILFQAALGMWTVTMKLMPVVVMSHLIGGFTLISLLLLLYLRTKPLRIPGGDFVARKLAPLALAGMGVLILQIILGGWTSSNYAALACTSLPICEGDWYKNLQLTQAFNPFQGEHETYEFGVLDYSSRMTIHVAHRFGAILTTGILLWLAYQLFTRSQSALLKRASLVLTGLVILQVGLGISNVVLHLPLGIAVSHNAGAAMLLLTLVFINYALWRKA
>NZ_CP041614.1|WP_144044458.1|228139_228706_-|hypothetical-protein
MSFLRREYELPKKSGAKPLILLFLVFVLPVAAAKIVLSLDLYQGGATNKGVLLPIGTSYQSLKMDNPKPREWQLLYLLPNKCDQQCQDHLYILQQSHIALGRDQDRVHTLILLSKDSDLHALASYKFETAKANDAIIKMLDRQQMIVVDPLGSLVMRYPAVNGIDKQIMQGKSLIVDLRKMLKLSRVG
>NZ_CP041614.1|WP_144044459.1|229801_230020_+|DUF2909-family-protein
MNLLIIFKIVLVLLLLFIMFNLARALFILVKGESETPVSHFLGRRVIFSVLVVLFILVALGTGVITQNPRPY
>NZ_CP041614.1|WP_144044460.1|230127_231003_-|cytochrome-c-oxidase-subunit-3
MTTKHEPYYVPAQSAWPIIGAVGLFLIAFGAGSYVQQLKSDGGSGGIILLTGIAVIIFMIFGWFRTVIAESMSGLYSKQMDRSFRQGMSWFIFSEVMFFGAFFGALLYARMIAVPWLGGDSNNAMTNEVLWPGFEAVWPLLTTPDGTKTEAMPWTGLPLYNTIILLTSSVTLHMAHVSLEKGKRSAITVWLGITILLGMSFLTLQVEEYIHAYQEMGLTLASGVYGNTFFLLTGFHGMHVTLGTVFLIVLFLRVLKGHFTPDKHFAFQAGSWYWHFVDVVWLCLFIFVYVL
>NZ_CP041614.1|WP_144044461.1|230999_231569_-|cytochrome-c-oxidase-assembly-protein
MSNNQGKSNRRLIGMLIAGAVGMFGFGFALVPLYDVLCEQLGINGKTQNSASTYKPITIDESRTITIEFMAQIQSDMPWEFKPEVKRMQVHPGELIRTNFNAKNLSLKDTIGQAIPSVSPGQGAAYFNKTECFCFNQQRLTAKESAELPLIFFVDPDLPDSITTLTLSYTLYNITDRGYVGSVEQGAAR
>NZ_CP041614.1|WP_144044462.1|231571_233200_-|cytochrome-c-oxidase-subunit-I
MNTLTREAEPNMEMVQVEEASDHHDEHQELYPSGIKRWLFTTNHKDIGTLYLWFSFIMFLTGGAMAMVIRAELFQPGLQLIEPNFFNQMTTVHGLIMVFGAVMPAFTGLANWLIPMMIGAPDMALPRMNNWSFWILPFAFAILLSSLFMEGGGPNFGWTFYAPLSTTYSPDSTALFVFSIHIMGISSIMGAINVVVTIVNMRAPGMTWMKLPLFVWTWLITAFLLIAVMPVLAGTVTMVLTDKYFGTSFFDAAGGGDPVMFQHIFWFFGHPEVYIMILPSFGIISAIVPTFSRKRLFGYSSMVYATSSIAILSFLVWAHHMFTTGMPVFAELFFMYCTMLIAVPTGVKVFNWVATMWRGSLTFETPMLFAVAFIILFTIGGFSGLMLAITPADFQYHDTYFVVAHFHYVLVTGAIFSIMAAAYYWLPKWTGHMYDERLGKIHFWCSVISVNVLFFPMHFLGLAGMPRRIPDYAVQFADVNQIVSIGGFAFGLSQFIFLALVIKCIRGGEKAAAKPWEGAEGLEWTLPSPAPYHSFTTPPEIK
>NZ_CP041614.1|WP_144044463.1|233209_234331_-|cytochrome-c-oxidase-subunit-II
MKRVLYIFLALLFTPYVLASEMPLNMTKGVTDISGQVYNLHMIILYICCAIGVVVFGVMIYSMINHRKSKGAVAANFHESTKVEIAWTITPFIILIIMAIPATKTLIAMEDSSDADITIKITGSQWKWHYSYFDQDIEFYSLLSTPRAQIEGTEEKGENYLLEVDKPLVLPINKKVRFLMTSEDVIHSWWVPAFAVKKDANPGFINEAWTRIDIPGTYRGQCAELCGKDHGFMPIVVEALSQADFDIWVAEQKNQASTAAAEAEASLSKSLSMNELMAQGEQVYMSRCAACHQPNGMGLPGVFPPMKGSPITTGPLTDHLEMVINGKAGTAMQAFGKQLTAQEIAAVITYERNAWDNNTGDTVQAADVSQHGQ
>NZ_CP041614.1|WP_144044464.1|234764_235277_-|cell-division-protein
MKNLIGNSPRHPGLWTNPLDQASITQECGSITTVSTHTQGRVELKKVSNRLATLSHQGQWIVLISPPNIGYKQMLAEAGVRMDRVLLVHAKDEIETLWAMEKALISGTSSAVICWTQVLDSRDNRRLRLVEKSARALGIVIEDANSHLHAKAHEQTDAHFNQACLFGSLH
>NZ_CP041614.1|WP_144044465.1|235309_235927_-|repressor-LexA
MRPLTPRQAEILELIKRNISDTGMPPTRAEIAKRLGFKSANAAEEHLKALAKKGRIEIIPGTSRGIRLTQAAEPEDLGLPLIGQVAAGEPILAQEHIEQHYQVDPSMFRPCADFLLRVRGDSMKDIGILEGDLLAVHKISQAKNGQIVVARVEEDVTVKRFEKKGSMVYLHAENEDYAPIVVDLTSQSLSIEGLAVGVIRNGNWQ

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Crispr_ID: NZ_CP041614_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_3

795806-795908

Orphan

Consensus_repeat	Method
GGCCTGCAGTGGTTAGAGCTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_3

>merge|NZ_CP041614|3|795806-795908|CRISPRCasFinder
GGCCTGCAGTGGTTAGAGCTAAATTATTCTAAACTGCGTAAATGATGGTGTATCAGTTTAACAATGCGTCTACTGTTATTGGCCTGCAGTGGTTAGAGTTAAA

>NZ_CP041614|3|3|795806-795908|CRISPRCasFinder
GGCCTGCAGTGGTTAGAGCTAAA	TTATTCTAAACTGCGTAAATGATGGTGTATCAGTTTAACAATGCGTCTACTGTTATT
GGCCTGCAGTGGTTAGAGTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144044864.1\|789165_789465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144044870.1\|793569_794916_-\|outer-membrane-channel-protein-TolC	unknown	unknown	gnl\|CDD\|236529
NZ_CP041614.1\|WP_144048804.1\|789925_790231_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144044866.1\|790338_791076_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_CP041614.1\|WP_144044881.1\|807892_811093_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|236798
NZ_CP041614.1\|WP_144044877.1\|804102_805680_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP041614.1\|WP_144044865.1\|789611_789830_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP041614.1\|WP_144044873.1\|797562_798135_+\|esterase-YqiA	unknown	unknown	gnl\|CDD\|182945
NZ_CP041614.1\|WP_144048802.1\|786684_787764_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP041614.1\|WP_144044875.1\|800130_801294_+\|L-sorbosone-dehydrogenase	unknown	unknown	gnl\|CDD\|225044
NZ_CP041614.1\|WP_144044880.1\|807200_807893_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176505
NZ_CP041614.1\|WP_144044872.1\|796057_796504_+\|DUF1249-domain-containing-protein	unknown	unknown	gnl\|CDD\|377720
NZ_CP041614.1\|WP_144044869.1\|792593_793343_+\|TIGR04219-family-outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|275061
NZ_CP041614.1\|WP_144044867.1\|791107_791584_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP041614.1\|WP_144044874.1\|798190_800077_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP041614.1\|WP_144044868.1\|791614_792586_+\|DUF2333-family-protein	unknown	unknown	gnl\|CDD\|378387
NZ_CP041614.1\|WP_144044879.1\|806734_807067_+\|DUF3392-family-protein	unknown	unknown	gnl\|CDD\|378746
NZ_CP041614.1\|WP_144044878.1\|805749_806676_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240625
NZ_CP041614.1\|WP_144044876.1\|803645_803837_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|381078
NZ_CP041614.1\|WP_144048803.1\|787912_788881_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144044870.1\|793569_794916_-\|outer-membrane-channel-protein-TolC	gnl\|CDD\|236529	PRK09465, tolC, outer membrane channel protein; Reviewed.	0
NZ_CP041614.1\|WP_144048802.1\|786684_787764_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.80318e-25
NZ_CP041614.1\|WP_144044866.1\|790338_791076_-\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	6.28451e-78
NZ_CP041614.1\|WP_144044881.1\|807892_811093_-\|mechanosensitive-ion-channel	gnl\|CDD\|236798	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional.	0
NZ_CP041614.1\|WP_144044877.1\|804102_805680_+\|PAS-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.73009e-64
NZ_CP041614.1\|WP_144044865.1\|789611_789830_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.3506e-09
NZ_CP041614.1\|WP_144044873.1\|797562_798135_+\|esterase-YqiA	gnl\|CDD\|182945	PRK11071, PRK11071, esterase YqiA; Provisional.	2.6276e-69
NZ_CP041614.1\|WP_144044875.1\|800130_801294_+\|L-sorbosone-dehydrogenase	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	5.11724e-55
NZ_CP041614.1\|WP_144044879.1\|806734_807067_+\|DUF3392-family-protein	gnl\|CDD\|378746	pfam11872, DUF3392, Protein of unknown function (DUF3392). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.88615e-37
NZ_CP041614.1\|WP_144044880.1\|807200_807893_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176505	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.	6.10347e-59
NZ_CP041614.1\|WP_144044872.1\|796057_796504_+\|DUF1249-domain-containing-protein	gnl\|CDD\|377720	pfam06853, DUF1249, Protein of unknown function (DUF1249). This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.	1.23487e-37
NZ_CP041614.1\|WP_144044869.1\|792593_793343_+\|TIGR04219-family-outer-membrane-beta-barrel-protein	gnl\|CDD\|275061	TIGR04219, hypothetical_protein, outer membrane protein. Members of this protein family are outer membrane proteins (OMP), as can be seen by their homology to YfaZ protein (see ) and by the OMP targeting region at the C-terminus, including a C-terminal Phe residue. Members of this protein family are found in the great majority of genomes with the GlyGly-CTERM protein sorting signal and the rhombosortase putative sorting enzyme, although the relationship may be fortuitous.	9.47093e-81
NZ_CP041614.1\|WP_144044867.1\|791107_791584_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	2.10047e-40
NZ_CP041614.1\|WP_144044874.1\|798190_800077_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP041614.1\|WP_144044868.1\|791614_792586_+\|DUF2333-family-protein	gnl\|CDD\|378387	pfam10095, DUF2333, Uncharacterized protein conserved in bacteria (DUF2333). Members of this family of hypothetical bacterial proteins have no known function.	0
NZ_CP041614.1\|WP_144044878.1\|805749_806676_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	1.85496e-115
NZ_CP041614.1\|WP_144044876.1\|803645_803837_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|381078	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain. This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.	3.1802e-22
NZ_CP041614.1\|WP_144048803.1\|787912_788881_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0

>NZ_CP041614.1|WP_144044870.1|793569_794916_-|outer-membrane-channel-protein-TolC
MKFKIRTICAALTLAFSTSAVQADDLLQIYQQALTSDPIALQAQAQRDALYEQIEENRAPLLPTISASVGYDKSWRNEDTMSNTDASGINAGVTLNQVIYDHSAWVGLSLAELAASQADAAYASSLQTLIIRVTSAYFAVLSAKDTFEFQGSEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQYDLARAQEILAENELINSYEALREITGIEHKTINILDTERFSAVSPSPARTADWLKMAESNSVDLLTTRIGKDIAQETISLYKAGHMPTLSLNAGYTTNIQQENSSESESVNDFDNGTVGLTLSIPIFEGFKVSSKVNQAQYQYVEASEKMEQTHRKVVKDVRNNFNNVGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYGYINSILALKQAAGTLNEDDVIAINNGLTAQATQTTTQ
>NZ_CP041614.1|WP_144044869.1|792593_793343_+|TIGR04219-family-outer-membrane-beta-barrel-protein
MKKTLVACALLASLVGTSAQAASLIGFKVGGDYWKADTSGTFAENGQPQQDFNYSSSSQGSIWVAIEHPIPLVPNVKIRENRLDASGSSVADGFEFGGQTYNGDINTNSDLSNTDFILYYELLDNDLVALDVGAAYKKMHGSFRVNDKATSGRVNSEIELDSGIVMAYADAQVGIPGLGLYGFADVMIGVDESSVYDYSVGLGWQFDGVALDTKVRVGYRDFNFDVNDFDGVTANTQFKGYFAGVELVF
>NZ_CP041614.1|WP_144044868.1|791614_792586_+|DUF2333-family-protein
MQMTWKKWTGIAVFIILIGYFISVWWSVAPDVIQPQQFSAGQESGVVGYATTTSLIMTMETLLNKRGGWLSNDVTPPSIFMDNMPAFEFGALEQARDLALIMRKEFSRSQSQSMADKDLLAAHSKLNIEHTSWLVPSAEGEYKDAIKLLKLYRAKISDPNNQEAQFYARADNLNEWLKEVQKRLGSMSQRLSASVGQDRLNTDLAGDSEASQSTPKQASQQIKTSWWKIDDVFYETRGATWALLNFMKAIEVDFADVLRKKNAEVSLQQIIRELEETQQSVWSPIILNGSGFGVVANHSLVMANYISRANAAVIDLTNLLIKG
>NZ_CP041614.1|WP_144044867.1|791107_791584_+|copper-chaperone-PCu(A)C
MEFKTLKQIFKHMFNFVLLFGASFSAMANVMLVDGQVRAMPPSVPNTAAYLTLENHGPSIKLVAVEADFVKEAQLHTVIEEDGMVKMRQVESFTIPQHGQLTLSESGKHIMLLGLKQPLVSGKSVNLTLKFDNGSELPVSLMVSKQAMTKSEGHHHHH
>NZ_CP041614.1|WP_144044866.1|790338_791076_-|enoyl-CoA-hydratase
MSTIQVKDEQGVRIITINRPEKRNALSLEMYTNLTEYLIQGESDNAIYCFLIKGQQDCFTSGNDVADFLKNSNLDSKHPAFNFLFHLLDLKKPIVAAVTGAAVGIGTTLLLHCDLVYADNTAKFQLPFVNLALVPEAGASLLLPQLVGPQKAAELLLLGESFDAQTAKTLNIINDVIPSETIFDFALAQAVKLAKQPPLALQASRALMRSNKELVRQQMKDELAQFSIRLKSDEARTRFEAFLKK
>NZ_CP041614.1|WP_144048804.1|789925_790231_+|hypothetical-protein
MIAALVMALEIWGVSEFVSRKFLNVEPLFWMDVSLWSVLVTSVMLLVILLWLTVAFSVLALVSALCILAALIMVVSGFSLLWPVLLLLLAAWGVGKSSQFD
>NZ_CP041614.1|WP_144044865.1|789611_789830_+|PspC-domain-containing-protein
MSAFSSTDRYMRRMKRPTSLVCGVAAMMADKFNWSCLWTRVVWAAVILLNPVMGLLIYFVLALVLPKWEANS
>NZ_CP041614.1|WP_144044864.1|789165_789465_+|hypothetical-protein
MFNSTVSKIAKASLVVAVLMGASMGAHADGLILTDLTRNIEQNISAQMQDMMQVAQRELSLSLQTQLSEAMFELEDSGKTSELVKQQSKAVITSAMVKD
>NZ_CP041614.1|WP_144048803.1|787912_788881_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MKPLNRTFSIAPMLDWTDRHYRYLARIMSTELLLYTEMVTTGAIIHGKGDYLAYNSEENPLALQLGGSNPQDLATCAKLAAERGYDEINLNVGCPSDRVQSGRFGACLMAEPKVVAECVTAMKQVVDIPVTVKTRIGIDDQDSYEFLTEFVDTVSDVGCDTFIVHARKAWLQGLSPKQNREIPPLDYQRVYRLKQDYPKLHISINGGVKTLDECREHLLHIDGVMVGREAYQNPYILAEVDQLLCGSNKPVLSRDAVLEKFIPYIEKHLVDGGRLNHITRHMTGMFQGEPGSRAWRRYISENAHKQGAGIEVIEQARKKMDC
>NZ_CP041614.1|WP_144048802.1|786684_787764_-|tyrosine-type-recombinase/integrase
MASFTIEKRTKASGKFSYRCTVRVKESGEIIHRESKTFSKKDVARTWGKIRCDAIEHHGALNTHKVVPLGTLLNLYFEDHDLWGKTGRTKRYVIKMLMDCDIYKVKSGSLKTSDLIEHCKTRRAAGAGPATIYHDIAYLRSVMKKALPVWDIFANYQIFDDAVPVLIEMGLVGKSQKRTRRPTKNELEKLKEGLQARMDFRPNGKTRIPFLDILDFSILTCMRIGEVCKLRWEDLNQDHKTVLVRDRKDPRKKAGNHMIVPLLAGSFDIVKRQTQHNDLIFPYNPRSVTAGFQRVRNELGINDLRYHDLRREGASRLFEKGYSIEEVAQVTGHKNLNILWQVYTQLFPHKLHDKFSDNK
>NZ_CP041614.1|WP_144044872.1|796057_796504_+|DUF1249-domain-containing-protein
MSSASSLNPKRYQPNINRFLALCGRNYFHILRWLPNGAEQGASWQVGGDYGLLDVRLLENTRYTQLIEISRNVGKTDFVDTPKITVRVYHDAKLAEVLTSRQIYQLSPVYDYPNVRMHHRDEKYRVNAFLEELLRIDNHTSVVCLAES
>NZ_CP041614.1|WP_144044873.1|797562_798135_+|esterase-YqiA
MLLYIHGFNSSPLSDKGLVTAQFFAEHYPDLNFHQPQLPSTPREAMELLSGLVESALEDGETLTYIGSSLGGYFASYLAEKYGGRAVLVNPAVTPFELFDDFIGQQYNPYIEEYYQVLPEHKDQVAAFNTDVILNPDRFLVLLQSGDEVLDYRQAVQKYHCCQLLIQSGGDHSFVGYETQMHFICQFLFS
>NZ_CP041614.1|WP_144044874.1|798190_800077_+|DNA-topoisomerase-IV-subunit-B
MTNQYTSDAIEVLNGLDPVKRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHATKIEITLHKDNSLEVIDDGRGMPVDIHPEEGISGVELILTKLHAGGKFSNDNYQFSGGLHGVGISVVNALSSRVEITVRRSGIVYDIAFENGDMVEELRETGTCGRRNTGTRVHFWPIPSYFDSANFSVSKLTYLLKAKAVLCPGLKIKFTNKQTDEVQEWFYESGLTDYLQSSVKDALMLPEEPFIGSLQGNNEAVDWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQGLLESMREFCEFRNLMPRGVKLTPEDIWDRSSFILSIKLLDPQFSGQTKEKLSSRQSAAFVSGIVRDAFSLWLNTNTEQAMALAEMCINNAHKRLKSAKKVARKKVTSGPALPGKLTDCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCDPDCSDISELRYGKICILADADSDGLHIATLLCALFMKHYKILVEKGHIYVAMPPLFRIDVGKEIFYALDEAEKQGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDVEDTIALMDMLLAKKRSGDRKIWLESKGDLADI
>NZ_CP041614.1|WP_144044875.1|800130_801294_+|L-sorbosone-dehydrogenase
MLLNQKKNQRRWSLLLAYVAVLFSPNLLATQPMMITVTKGFGLTLYASGLGDAKQMALGDKGTLFVGSHKKGTIVALVDSNADGRVDKRYTVAKGLDNPEAIAFHLGDLYVAVDEKIVRFVDIENRLRRPGRGKEVYDRLPGQTNKSRRAMHFGPDGRLYVAVGAPCNVCEAVAPFGSIIAIDMETGSSEQVATGIRSVTGFDWSPTDDALWFADLGRDWMGDRLPPDEINRLEKTGEHFGFPYIHAASVIEPAYDKPKNLKITLPNFELPAHVSPMGLHFYRGQAFPAKYHNQMFVAENGSWNRSSKIGYQVVMLEIEQQKVVKRSTVVSFLDGGFPVARPYALLTAPDGAMYISDDLKGNIYRLYYKDIVKKETEQAAQAEENEK
>NZ_CP041614.1|WP_144044876.1|803645_803837_-|(2Fe-2S)-binding-protein
MYVCLCFAVTDTQIKEAVSQGDVSLADVKKRLGVGSQCGKCTKMAGQIIQRQLDIEPNFYEVA
>NZ_CP041614.1|WP_144044877.1|804102_805680_+|PAS-domain-containing-protein
MRQNLPVTQKNYDYPSDWILLSTTDTSSMIKYANHSFCEVAGFSLDELMGEPHNLVRHPDMPPQAFEDLWNTINGGNPWKGLVKNRCANGDHYWVDAFVTPIAENGKVIEFQSIRSKPKNEQVQRAEEAYKELNEKGRVSKLKRVLSLSMKLALLACFSLLPMLYLAIESGVLGIGLLLITLMALFIGGNLVLSRFKVIVDKCKGIYSNPLMSYLYTGYVDDVAQIDLALQMQNSEMKAMLGRALDSCEQTAKKSLESVAKSEDVKTNSHSLTKEVEQVATAMQEMTATLGDMASNCSDAATSSQAASEEADAGDKIVSQTISSIQSLSEQLTNTSEVITELEEQSKGIGTVLDVIQSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTHESTTEIQTMINLLQQGTGKAVHSVHQGVDSAQLCSEQADQAGSALRTIRDAVASITDMTHHIASAVEEQSSVAVEVNRSVVTISELNGSSNDLGDEMVGINHEVVDNINSQKMLVEQFLKRSQKQM
>NZ_CP041614.1|WP_144044878.1|805749_806676_-|D-2-hydroxyacid-dehydrogenase
MRYKLLLLTGDNERYRSLLESCHLPEVEILGDETHQISQANIWLAEPSLAAPLLPHGKHIIWMQSTEAGVDALVKPRQRKDYRLTNVRGIFGPLMSEYLFGYLLAHQREHTLYRSQQAQKIWRPGSFKTLQGQHLLLLGTGNIAKHIAKTAKHFGMHVTGINRGAKPTIGFDDVNTLSNLPHYLPQADAIASILPSTPDTRGTLNAQTLSLIKPNGILFNLGRGDVLDLDALYLQLKENSGQNAILDVFNQEPLPQHHPIWSLDNVIITPHIAAPSFPEQVVEIFADNYHKLLRGERLSYEVNFERGY
>NZ_CP041614.1|WP_144044879.1|806734_807067_+|DUF3392-family-protein
MEHIISVFHQVGSLLYPWLNEISTAIIACFLIVFGADINRLLSRKLIGRSFVLRTLVFVLINAFGYGLLIVTASPILANKMAQVSAHWLLFLIIGFFIFIGIWAQRHRKI
>NZ_CP041614.1|WP_144044880.1|807200_807893_-|glycerophosphodiester-phosphodiesterase
MIIFAHRGASGYAPENTLAAMKKAIELGARAIEFDIHNVEGELYVFHDRRLDNKSNGTGLIEEVSRSYLDSLRVDGEPIPTLWQVMSYLNQHNCLVNIELKGMNCLEIFIDTYPKLINQLNFSTDKLIISSFHHGFLATFRQRFPQALLAPLFEGVALNSQETTSRLDAYSLHLSLSFLTQDCVTQAQSRGLKVFVYTVDNESDMTQLQKMGVDGIFTNFPDRAMKALQA
>NZ_CP041614.1|WP_144044881.1|807892_811093_-|mechanosensitive-ion-channel
MRTIFLLLMAFTGFSAAASSPLELNKRLGLTQPASATLTAEQKLAYIQHSIEEQVLIEKNHLKLVNNYQGHKLSLERQLQEAKSPLPWSKTNDPTQQASLAYLRLSELKEIEAELNTKVTDLIKQHNQLPSDIASARQSLNQHKKNQIDNSDGNQDMLLRAQRQLYIQILATLEAEQASSQKRINLNQQQMLLVRQQLSQQESLIEEINKATAKQRQKKTDATIAKSLFETSAEQSPLTQQLSQRNLGYANKLTILTKDTNRAVLAQEAAENLYQVQAKQLTNIQQQVGLIKLNSAFGERFLQMLQSLPAPPNQDKLQTKIAQARLERYQLEQELTINNQQQLANEPLTKIQMRLLTSQNDLLTQLLLSQDLYLSELTDLRVIYEQLTQQNIALKSILNEHLFWVPNANSIDKLWVTDLFQSVKWLMGQTFWPDISVSFDEQSEYWSWWIILFVLCLVAQDLLTPKFKSAMANDITFVGNVTQDLFSYTFRALINSLLYCVIKPLPVIAAGAILLLSSLNLTAAIGMGVLVIGLLYLLYRFTYLLALNRGLLIGHFKGEKEIIRQGQLRFKTFIIMAIPFFWVMGFTEFIDNSVLRNSIGRGAFIIFSLFLFGFYKDILSLSKKNKHQHQDDKNKKLLQRFLWSVLLLVPPVCAILAFRGYYYTAFQVLLQLQLSLLISLGFMLLYQLIKRWMLIERRRIAFDRAKARRAEILLQRERDEDPQSNTDPLDTYEEPVVDLETISSQSLGLVRSLLLLAFLASLIGLWTQTHTALFSLLDGVTLWTSNSLVNGIEQQLPITLKSLLLGLVIVGFSLMIATNLPGLLELTILQRLDLSQGTGFAITTMSRYLVVFFGILSGFSTLGMEWSKLQWLVAALSLGLGFGLQEIFANFISGLIILFEKPVRIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIIPNKAFITEQLINWSLSDPITRVIVYVSVARDSDPARVEAALYQAVKGCDDALESPEPEVWFAGFGKHTQDYEVRAYAKDMNTRWPLRHKLHKAISKKLQENQLELAYPQLEVHINNTQSKEAQGVIRS

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Crispr_ID: NZ_CP041614_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_4

868480-868586

Orphan

Consensus_repeat	Method
TTCCAGTGGTGATGATATGACTATGTTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_4

>merge|NZ_CP041614|4|868480-868586|CRISPRCasFinder
TTCCAGTGGTGATGATATGACTATGTTGCCTGAAGGTCGGACAATATTTATCAGTCTTAAATGTAAGCTGCTACTCGTTCCAGTGGTGATGATATGACTATGCTGCC

>NZ_CP041614|4|4|868480-868586|CRISPRCasFinder
TTCCAGTGGTGATGATATGACTATGTTGCC	TGAAGGTCGGACAATATTTATCAGTCTTAAATGTAAGCTGCTACTCG
TTCCAGTGGTGATGATATGACTATGCTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144048805.1\|874366_875086_-\|deoxyribonuclease	unknown	unknown	gnl\|CDD\|185091
NZ_CP041614.1\|WP_144044911.1\|848604_849114_+\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144044918.1\|866909_867338_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144044917.1\|865462_866512_-\|methyltransferase	unknown	unknown	gnl\|CDD\|181902
NZ_CP041614.1\|WP_144044923.1\|875274_875823_-\|SprT-family-zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|179886
NZ_CP041614.1\|WP_144044916.1\|862211_863345_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100081
NZ_CP041614.1\|WP_144044927.1\|884859_886209_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144044920.1\|871059_872421_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|224699
NZ_CP041614.1\|WP_144044922.1\|873630_874359_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NZ_CP041614.1\|WP_144044913.1\|851020_851464_-\|TIGR02444-family-protein	unknown	unknown	gnl\|CDD\|378196
NZ_CP041614.1\|WP_144044914.1\|851553_853464_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NZ_CP041614.1\|WP_144044912.1\|849208_850804_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|225186
NZ_CP041614.1\|WP_144044915.1\|853645_853846_+\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|131496
NZ_CP041614.1\|WP_144044925.1\|877420_878332_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP041614.1\|WP_144044910.1\|847451_848423_-\|hydrolase	unknown	unknown	gnl\|CDD\|182883
NZ_CP041614.1\|WP_144048806.1\|878451_883008_+\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|236307
NZ_CP041614.1\|WP_144044921.1\|872493_873447_-\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP041614.1\|WP_144044924.1\|875973_877140_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238279
NZ_CP041614.1\|WP_144044909.1\|847212_847449_-\|YheU-family-protein	unknown	unknown	gnl\|CDD\|377710
NZ_CP041614.1\|WP_144044926.1\|883274_884669_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144048805.1\|874366_875086_-\|deoxyribonuclease	gnl\|CDD\|185091	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional.	8.97836e-110
NZ_CP041614.1\|WP_144044917.1\|865462_866512_-\|methyltransferase	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	6.36467e-80
NZ_CP041614.1\|WP_144044923.1\|875274_875823_-\|SprT-family-zinc-dependent-metalloprotease	gnl\|CDD\|179886	PRK04860, PRK04860, SprT family zinc-dependent metalloprotease.	2.12655e-82
NZ_CP041614.1\|WP_144044916.1\|862211_863345_-\|site-2-protease-family-protein	gnl\|CDD\|100081	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.	1.1578e-34
NZ_CP041614.1\|WP_144044920.1\|871059_872421_-\|alkaline-phosphatase	gnl\|CDD\|224699	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism].	8.93606e-132
NZ_CP041614.1\|WP_144044922.1\|873630_874359_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	4.14653e-98
NZ_CP041614.1\|WP_144044913.1\|851020_851464_-\|TIGR02444-family-protein	gnl\|CDD\|378196	pfam09523, DUF2390, Protein of unknown function (DUF2390). Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.	3.53898e-30
NZ_CP041614.1\|WP_144044914.1\|851553_853464_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NZ_CP041614.1\|WP_144044912.1\|849208_850804_+\|FAD-binding-protein	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.26134e-60
NZ_CP041614.1\|WP_144044915.1\|853645_853846_+\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|131496	TIGR02443, Hypothetical_protein_yheV., conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.	5.82804e-18
NZ_CP041614.1\|WP_144044925.1\|877420_878332_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.23644e-71
NZ_CP041614.1\|WP_144044910.1\|847451_848423_-\|hydrolase	gnl\|CDD\|182883	PRK10985, PRK10985, putative hydrolase; Provisional.	3.83185e-126
NZ_CP041614.1\|WP_144048806.1\|878451_883008_+\|ATP-grasp-domain-containing-protein	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	9.23835e-155
NZ_CP041614.1\|WP_144044921.1\|872493_873447_-\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP041614.1\|WP_144044924.1\|875973_877140_-\|hypothetical-protein	gnl\|CDD\|238279	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.	2.2967e-10
NZ_CP041614.1\|WP_144044909.1\|847212_847449_-\|YheU-family-protein	gnl\|CDD\|377710	pfam06794, UPF0270, Uncharacterized protein family (UPF0270).	1.27479e-16
NZ_CP041614.1\|WP_144044926.1\|883274_884669_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	1.01437e-130

>NZ_CP041614.1|WP_144044918.1|866909_867338_+|hypothetical-protein
MRLLATWMLVLYLFCAHSTAAQVIVNGSAIDFPLPAQELRLIFSMQKIYWPDGQKIQVFILSPSSELHKEFCFKQLDMMPYMLQRRWDRLVYSGTGERPIILKNEVEMQEKIAKTPGSIGYLAEPALSGNNRVARSLYEASR
>NZ_CP041614.1|WP_144044917.1|865462_866512_-|methyltransferase
MLTNPSQVILRNSNLFENQNVLVINYEDDRLPKHLLEHANKVTALALDFHHHLQMEPEASQELSLFFSHCLPNDELFDTAIIYYPKAKALAAYLLNLAGQHLKPGGQLVVVGENKGGIRSLVKQIPAYFDKPFKQDNARHCLLYISELIEQAPKVRLDEWVSQYQLDTPQGEITVCNLVGVFSEKKLDEGTKLLLSNLPRMKGRVLDFGCGAGVITAALLKEQPQLQVECIDINAMALASCELTLTANNFIATTYPSDGLAQTQDKFDGIISNPPFHDGLKSTTDIAKNFVSDSVKKLKKGGIWHIVANRHLAYSDTIEDNFGQVNVIAENNKYKIYSNKFNKINKQTR
>NZ_CP041614.1|WP_144044916.1|862211_863345_-|site-2-protease-family-protein
MELLRIDCLGKELRLEGSMAGWQQLFWGDTLVSVKQASADNEGLKTHEFELATQVNQVNTNPDTNIEKSIASQAIKISLEINLTWQPFSLDYRLIKDDQIINSGTRDTKDIERQVPVKPIEAKRKVSLVGLASLGFKLLKSAKVIKVVLAGASVAAYSWLFSFQFALALIACLVFHEYGHIRAMKHFGMKTKGIYLIPFMGGLALSDEKINTRWQDVVISIMGPTFGLLMSIMALIAYWLTGNVFFAGLAAFNALLNLFNLLPILPLDGGHILKSISFSMNSVLGLGACVAGAAVGVYLSYTLGLALLGFLLLIGSLEIVFEWKTRHQSHLLPLDRYGQIFSTIWYFLTVGALIAIIWYLAGSGDNMLGLPLKILQS
>NZ_CP041614.1|WP_144044915.1|853645_853846_+|YheV-family-putative-metal-binding-protein
MAEVRVKKRFVAGAKCPKCKAVDSIVLFKEQGVETVECVECDYREQQTDEKVAKKASGDIIGVFKP
>NZ_CP041614.1|WP_144044914.1|851553_853464_-|ABC-transporter-ATP-binding-protein
MISISQAQLIRGTKTLLDETSLTIYPGHKVGLVGANGTGKTSLLALILGKISLDKGDISLPSGWQIATVAQETPALDVSALDYVIDGDFEYRELEAKLVQAQHDDNGNEIAHLHGKIDAIGGYLIRSRAASLLAGLGFNETEQSNFVRHFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDTMYWLEGWIKAYQGTLILISHDRDFIDGIVDEIIHVEHHKLNFYKGNYTAFERIRAERMAQQQVAFERQQKERSHMQSFVDRFRYKASKAKQAQSRLKALERMTELLPSQADSPFHMSFREPEALPNPLVTMEHVSVGYGDKEILKSVHLNLVPGARIGLLGRNGAGKSTLIKLLSEELAPMKGKYETNPGLNIGYFAQHQLESLRLDDSPLQHLSRLAPTHREQELRNFLGGYGFNGDMVLSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTNHLDLEMRHALTMALQTFEGAMIIVSHDRHLLRLSCSDYYLVDKGQVTSFDGDLDDYHQWLLDAAKAANKTEASTEAKPAQDKKLQKRLEAELRQKLSPMRKVQLKLEKAQQQANDRLSEIETMLADMSLYDAENKAKLTQVLAERTTLAQALEESEMEWLDIQENIEEIELQVRSQL
>NZ_CP041614.1|WP_144044913.1|851020_851464_-|TIGR02444-family-protein
MTFVNHFDISLWKICDGYYHQHQALCLELQDNHQLNVNLLLLSLWLDKQDYLLSTLDWSQLQSETHQWEERVLLPYRKLRKLSKNSLASDEYQQMLDVELMLERKSQGLILHKLKQLSPSGESSNLGTYLSLFNLDKVDYPSLVELV
>NZ_CP041614.1|WP_144044912.1|849208_850804_+|FAD-binding-protein
MAIPDPIVEGLASGWKHIDASQLSQDQTLEADVVIVGSGAGGGVAAEILTDAGLTVIIVEGGPLKSSESFNMEERRAYPNLYHQAAAMKTKDKAIGIFQGRAVGGSTTVNWTTSIRTPKPTLDFWAKDKSVQGLSREELDPWFDKMEKRLNISKWEYEPNRNNQALKLGCENLGWHYTVIKRNVKGCWNTGYCGMGCPVNAKQSMLVTTIPAALDKGATLVSRAKVIELEHHNDKILAVKAQALNEQMQPTEVKLVFKAKHYIIAAGAIHTPTILLRSNLADPHELLGKRTFLHPTLLSGAIFSDPINGHSGAPQSIYSDEFVWKHGAASGELGYKLEVPPVHPVLIASKTIGYGKTHAALMEQFNQLQVTIALIRDGYHEQSQGGQVQLTDTGFAIDYPLNETFWRSVRRAFGSMAELQFAAGAKRVLPITEGAPYLNSWKEAKSAIETLDLGPLKTVVASAHVMGGCPMGEDTKLSMVDSQGNSHYYENLSVMDGSVFPTSLGANPQLTIYGMTARNATLLAERLKSSS
>NZ_CP041614.1|WP_144044911.1|848604_849114_+|twin-arginine-translocation-signal-domain-containing-protein
MERRTFLTTALVGTAALALGVNLYAPEHIKVNKALDSEHRLLFSVLLPVFLDDALPEVEKLRIAAQNRTLDAITQTISLLPADGQAELEQLLDMLENRLGLLVLTGSMTPLMMRNPDQLIAMLEYWRNSFLDMMVTAYQGLRELVLASYYSCPEHWNRLNYAKPTFLEV
>NZ_CP041614.1|WP_144044910.1|847451_848423_-|hydrolase
MMRYFSPPWWARNPHVQTILPVLTKVDRPDLTRQRLELSDGDFIDLDWLGQPKAHQPIVIIIHGLEGSSESHYVRRLLNDCRRQSICALVHHHRSCSGETNRRARSYHSGDTQDLQENLSQLRLKYPDSPLLAVGYSLGGNVLTKYLGEHTNTSLIERAVIISAPLQLSACAKRLESGFSKVYQSYLIKQLQQKTTEKVKNPQLAQDMPVSLSQIPQLQTFYDFDHRVTAPLHGFNGVDDYYRRASGMDFLQYIHKPTLVIHAADDPFMTADVIPTAEQCASQVTYELHSRGGHVGFIDGGTPFKPRYYLEQRILHFLIPQEA
>NZ_CP041614.1|WP_144044909.1|847212_847449_-|YheU-family-protein
MLVPYDALLQLPSTTMDNLIKEYLLTQVEDGGFSDTDERVYISAIERCKQLLKQEVLVVEFSEDDESIAIKHKEHLSR
>NZ_CP041614.1|WP_144044920.1|871059_872421_-|alkaline-phosphatase
MLAMGMTQKMKIFKQCMLAGVALIGSMGVAAQAVTPVQNLLGDAPSVPKNIVIMIGDGMGPAYTSAYRYYKDNPDTQEIEQTVFDRLLVGTSSTYPARVSGYVTDSAASATALATGTKTYNGAISVDTNKQPIATIMEKAKALGLSTGVAVTSQINHATPAAFLSHNESRSNYDELAYSYLKTDADVMLGGGQKYFPTSLIKKFEAKGYQYLSDFNQLDSIKQGKVIGLFADVQLPWAIDDSDSHKLSKMTAKALELLSQNDQGFVLLVEGSLIDWAGHNNDIAAAMGEMEEFANAIEVVEQYIRKNNDTLMVVTADHNTGGLSIGANGEYRWDTSIIRGVQASPDFIANDTLADGDWRARVSLNLGFEPNEDELSQLSRARMQGKEVMTTSIKHLIDSRSNTGWTTGGHTGVDVQVFATGPAARLFAGYQDNTDIATKLISLLPKAKSQPNK
>NZ_CP041614.1|WP_144044921.1|872493_873447_-|glutathione-synthase
MIKLGIVMDPISDINIKKDSSFAMLLAAQSRGYQLFYMEMRDLAMVNGKAMANMRALTVKSDPQNWFELGETIDTPMSDLDVVLMRKDPPFDTEFIYATYMLERAEEEGVLIVNKPQSLRDANEKLFTAWFSEFTPDTIVTRDETRIRNFYQEKGDIILKPLDGMGGSSIFRVKKNDPNLGVIIETLTDHGQQYAMIQAFIPDITSGDKRILVIDGEPVPYSLARIPQKGETRGNLAAGGRGVAQPLSESDWHIARSIGPELKKRGLIFVGLDVIGDKLTEINVTSPTCIKEIEAAYDVDITGMLMDAIEARIKARI
>NZ_CP041614.1|WP_144044922.1|873630_874359_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRIPRIYQDSPLAIGDSLALHDEAASHIGRVLRMTPGEQISLFNGSDHDYLAEIISASKKNVSVKVLSSSANASESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGERLEKKIHQWQKIVIGACEQSGRSRVPEIRPAMSLEAWCGEQTDSLKLNLHPRAAHGIGGLSLEVAKVRLLIGPEGGLSETEILKTEQDKFTDILLGPRVLRTETAALTAISALQLKFGDL
>NZ_CP041614.1|WP_144048805.1|874366_875086_-|deoxyribonuclease
MGLALSLLLSSPSFASPSHPTSFSQAKRLAKKIYSSELPHTSFYCGCDIKIQGKKWQPDLQSCGYQVRKQEKRAARIEWEHLVPAWELGHQRKCWQEGGRKNCGKNDPKYKKMESDLHNLVPAIGEINGDRSNYRFSQWSAKPEQYGRCAMVVDFKSRKVEPPGYTRGRIARTYLYMQDTYDLKIAKSQLKLFKAWDKTYPVDTIECKRDEAIARTQGNHNPFVKQRCDSPAVNTQIAE
>NZ_CP041614.1|WP_144044923.1|875274_875823_-|SprT-family-zinc-dependent-metalloprotease
MFNLFGSKNTAQAGSFETAHYEFEDERHQQIAEQVLDYYRQAETHLKRTFPHPEISFKLRGKSAGTAHLQLNLLRFNSTLLAENHQAFIDQVVPHEICHLLAYQLYGKVKPHGKEWQALMIKVYQLEPATTHTLNTESVSGKTFDYLCDCGNIPLSIRRHNKVIRGETQYRCRCCKQELKRA
>NZ_CP041614.1|WP_144044924.1|875973_877140_-|hypothetical-protein
MTKSCLAVAGLITGAMFSTIAMASLDIEEARVSTATQAMPEVVGRYQALVDSLEEQYKQQTDELLMTQMVARQGERLWQQAVRDVQSGGQDDRPLYWGRLAMKTLLKQQAPSFQIAPWQRNINLSAVEKSSRGFSNISFAADTQVKILLTGFDPFFLDRNIDQSNPSGLAALALDGYQFSVNGKKAQIQTVMIPVRFADFDQGIIESLLTPYYRENSLDMIITVSMGRDDFDLERFPGRNRSAAAPDNLNVLTGGNNEKPIAPMFNGKTLNGPEFVEFSLPVAAMQTVQGDAAKWKVNDNHSVTTLARGKFNATSLSELQAAISVEGSGGGYLSNEISYRAVLLQQQFNSKIPVGHIHTPRVESFDAKTETDIVEQIRAMVIAGAKSL
>NZ_CP041614.1|WP_144044925.1|877420_878332_-|LysR-family-transcriptional-regulator
MPDLNGMMLFAAVVRAKGFSQAARETGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVGALFYQHCISIRDEIEAAKATIENTNNDVSGSLRIAIPVSFSQELIANLCSSFMRLYPNVELDVQFTDSEVGLVGEGYDIAIKYGPLQSSDLVARLLFERKPILVASPGYLKTNGTPATPQELANHDGILLGTSRSAPIWPLGKGSRKTMVSFKRKVRVNSAVMVKKLAQDDFGIAMLSNSVCKNELASGSLVPILQEWPIEAFKVYGVYSSRRQLATNISVFLDFFTKRFSSQESLQSLMM
>NZ_CP041614.1|WP_144048806.1|878451_883008_+|ATP-grasp-domain-containing-protein
MTSKNQPTNKTQAQSADPLFLKAEHLAQDFSLFPEHSKQSLAEEIKGLLGEDTIQANLKELEQLDVDGYVTKVIQPTLDKNRAGAKRVIADLKGKLIAENHQGPFYSAEIELNFGTRTRRIGFIAQERTTNNGAWMPEHHLAACKAIRKFAELSMPIIYLIDTPGADAGEVANSQNQAHSISKAIAESANVDVPTVGIVIGAGYSGGAIPLASANILLSLRDGIFNTIQPQGLQSIARKYNLSWQECAKSVGVAPEELYTSGCIDGIIDFSPADKDERQHNLRRAIISSIEAVENAAVQFVRESKDLREHYDRSLTRFLNPTKNLEALEHHAELAVANNPTMHLNLFGSSYRYLRYLTLRSRIQSISQEQYGRLSKVSVPEGDLLARIQQEQDRVFQSWLSNPDKLVYDEELNKLWGNFTAKRDEVSTERNMLTRLILGEPKENYKKARKALIFNISWSLFHRWKGNAENNFKGLIQYLETLPSEVTQADWPEVNKLTVLDVVVHDELREDFIWQCHNILIFNALYDNVVGNLASIAKEAMMSKSLSRASVDNLLHSSIDRALSTQDTANDKSKFYKWLKYFMSQSNRAELLTKTEQWKSVGFPQLNDSLFVILTYFFERLLPEYFDSEEESGEYTGAINPVRIGRRKDFWNRLTMGYQDLLIQKVLRDDKRAGKMGWESVIGKFFTDFDEINGDKMSANLLNFPGFRLSIEDALDKGIRPCGLITGMADFERNGQQMRVGVAVSNTAFQAGAFDMASAEKFSALLIECAKRKLPVICFISSSGMQTKEGAAALFSMAVVNDRITRFIRDNELPVLMFGYGDCTGGAQASFVTHPLVQTYYLSGTNMPFAGQMVVPAYLPSTATLSNYLSKVPGAMNALVINPFSDTIDDQLSSIDPLMPKPTAKIEDVIANALSTLVPEMMAADEEIVQDDPRELMKPIKKVLIHARGCTAVKLIRKAHDNGIDVVLVASDPDMNSVPADMLKGNDKLVCIGGNTSDESYLNAYSVLKVAEYENVDALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQDNGVPVVPGSHGILSNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVERQGDMISLFQQTATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVVEESGSTMLPPELKEKVLQYTLDLGNATDYMGAGTVEFIYNLDTNEVYFMEMNTRLQVEHPVTEATSGIDIVSAGFDIAAGRSIEDLKPQDKGYAIEVRVTAEKAALDNHGVLQLLPHPGMITEYVMPERDDIEIISIAEAGKEVSPYYDSLIAQIICRGESREDVINKLHDYLADHVVIKGIATNIPLLTRILKDGTFNEGVYDTNYLPRLMAELDVPELIAEMEAAAETVGVDTASLRVGESNELKVMAQGAGIFYTSPAPGEADFVKEGDIVTVGQTLALTEAMKMFSQLSLAGYNRPDAVLYPEDKKYRIERVLNSNGQQVSQGDLLFVVSPVES
>NZ_CP041614.1|WP_144044926.1|883274_884669_+|30S-ribosomal-protein-S6--L-glutamate-ligase
MTNKIIVGSEEWCSLPGLGIKAVKARVDSGATTSSIHAINIKTFKRNGSTWVSYEVHPIQGSRKVTLLCESKLIDRRVIKSSNGETERRYVIREQLQLGNQSWDVDLTLSNRANMGFRMLLGREAMGQKILVDPSANFNFGDYTEDETNLLYGNKNMPSTGLKIGLLASNPNLYSNRRIMEAGQQRGHEMFFYNIQQCYMKLDASEPEVHYRGGRILNDLDAVIPRIRPSMTFYGCALTRHFESLGVMALNNSAAITQSRDKLFSLQLLQKNNLAIPTSGFANSPADTTDLIDMVGGAPLIVKLLEGTQGKGVVLAETRKAAESVINAFKSLKANLLVQEFIKEAQGKDLRCFVIDGKIVASIERTAAPGEFRANIHQGGTASIVQISPEEKKLAIKAAKTMGLQVAGVDIIRSSKGPLLLEINSSPGLEGIEAATGIDVASAMIDSIEKKLGWKRVSLEDAQA
>NZ_CP041614.1|WP_144044927.1|884859_886209_+|hypothetical-protein
MPEKITKKLNGIADKIVDNSPWVIGGTVLLLLVYLSVVGQAQARIHDHPEQSEFNLSLSGFGTLGVVRRSSDELYFHRELSMNASDSEYSFKPDSLLGLQVNVDFTESLDAIAQVVLKDRASDTVLDSLELMFLRYRPNRDWAIRLGRTSTDLYMLSEYRNVSYAYLWSRPIPEFYAITSSIAKIDGVDISYTHELGGGSWETKLAYGTTHSVLAVEAGFFDVNLKNVFALTSIYTWENWIFRLAAASVEVDELEFQTNELVEGLNLVPDTLWPEAGVLAQNIDGPGQKLQYYTLGLQYDHMNWVIQSELGYINSDWGITQSFYNGYLSVGYRVDEMTFYGVLAHIDNSEEPTRYVSPLLPDHLPPELSGGIKTLYEGAVEALSASQIEQTTFSLGMRWDLYPNTCVKFQWDHTWVDSRGTALWTQAQEQIGDAEVDLLSLNFNFIFNL

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Crispr_ID: NZ_CP041614_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_5

1229607-1229708

Orphan

Consensus_repeat	Method
GTTCTGACCCCTTTATCCGCTTTATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_5

>merge|NZ_CP041614|5|1229607-1229708|CRISPRCasFinder
GTTCTGACCCCTTTATCCGCTTTATCTTTAATTTATCTTATTGTTTAATCATAATATTTTGTGGGGTTTCGTCAGGTTCTGACCCCTTTATCTGCTTTATCT

>NZ_CP041614|5|5|1229607-1229708|CRISPRCasFinder
GTTCTGACCCCTTTATCCGCTTTATCT	TTAATTTATCTTATTGTTTAATCATAATATTTTGTGGGGTTTCGTCAG
GTTCTGACCCCTTTATCTGCTTTATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144045162.1\|1230490_1231522_-\|transposase	unknown	unknown	unknown
NZ_CP041614.1\|WP_144045165.1\|1234685_1235636_+\|DUF808-family-protein	unknown	unknown	gnl\|CDD\|377542
NZ_CP041614.1\|WP_144045169.1\|1239443_1241216_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|378184
NZ_CP041614.1\|WP_144045155.1\|1223596_1224334_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NZ_CP041614.1\|WP_144045158.1\|1227317_1227737_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144045168.1\|1238807_1239242_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341361
NZ_CP041614.1\|WP_144048841.1\|1220801_1222145_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_CP041614.1\|WP_144045159.1\|1228176_1228698_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239824
NZ_CP041614.1\|WP_144045157.1\|1226291_1227131_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225319
NZ_CP041614.1\|WP_144045160.1\|1228905_1229244_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144048842.1\|1237635_1238037_+\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|377131
NZ_CP041614.1\|WP_144048840.1\|1219594_1220347_-\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP041614.1\|WP_144045167.1\|1236536_1237424_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP041614.1\|WP_144045161.1\|1229794_1230127_+\|zinc-chelation-protein-SecC	unknown	unknown	gnl\|CDD\|200353
NZ_CP041614.1\|WP_144045154.1\|1222244_1223162_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP041614.1\|WP_144048839.1\|1218248_1219478_-\|ATP-dependent-RNA-helicase-SrmB	unknown	unknown	gnl\|CDD\|236877
NZ_CP041614.1\|WP_144045156.1\|1224541_1226266_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP041614.1\|WP_144045166.1\|1235834_1236494_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP041614.1\|WP_144045164.1\|1233360_1234017_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP041614.1\|WP_144045163.1\|1231633_1232197_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144045165.1\|1234685_1235636_+\|DUF808-family-protein	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	1.12609e-138
NZ_CP041614.1\|WP_144045155.1\|1223596_1224334_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	6.20345e-87
NZ_CP041614.1\|WP_144045167.1\|1236536_1237424_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.30218e-73
NZ_CP041614.1\|WP_144045168.1\|1238807_1239242_-\|CBS-domain-containing-protein	gnl\|CDD\|341361	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain. The putative Acetoin Utilization Protein (Acub) from Vibrio Cholerae contains a CBS pair domain. The acetoin utilization protein plays a role in growth and sporulation on acetoin or butanediol for use as a carbon source. Acetoin is an important physiological metabolite excreted by many microorganisms. It is used as an external energy store by a number of fermentive bacteria. Acetoin is produced by the decarboxylation of alpha-acetolactate. Once superior carbon sources are exhausted, and the culture enters stationary phase, acetoin can be utilised in order to maintain the culture density. The conversion of acetoin into acetyl-CoA or 2,3-butanediol is catalysed by the acetoin dehydrogenase complex and acetoin reductase/2,3-butanediol dehydrogenase, respectively. Acetoin utilization proteins, acetylpolyamine amidohydrolases, and histone deacetylases are members of an ancient protein superfamily.This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT (aspartate kinase/chorismate mutase/TyrA) domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.43878e-26
NZ_CP041614.1\|WP_144048841.1\|1220801_1222145_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	2.48597e-148
NZ_CP041614.1\|WP_144045159.1\|1228176_1228698_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239824	cd04332, YbaK_like, YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).	3.79928e-21
NZ_CP041614.1\|WP_144045157.1\|1226291_1227131_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|225319	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only].	9.74392e-88
NZ_CP041614.1\|WP_144048842.1\|1237635_1238037_+\|CidA/LrgA-family-protein	gnl\|CDD\|377131	pfam03788, LrgA, LrgA family. This family is uncharacterized. It contains the protein LrgA that has been hypothesized to export murein hydrolases.	3.75778e-22
NZ_CP041614.1\|WP_144048839.1\|1218248_1219478_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP041614.1\|WP_144045161.1\|1229794_1230127_+\|zinc-chelation-protein-SecC	gnl\|CDD\|200353	TIGR04102, SEC-C_motif_domain_protein, SWIM/SEC-C metal-binding motif protein, PBPRA1643 family. Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.	2.96579e-61
NZ_CP041614.1\|WP_144045154.1\|1222244_1223162_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	2.39612e-158
NZ_CP041614.1\|WP_144048840.1\|1219594_1220347_-\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	4.01723e-56
NZ_CP041614.1\|WP_144045156.1\|1224541_1226266_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP041614.1\|WP_144045166.1\|1235834_1236494_+\|peptidylprolyl-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.72765e-60
NZ_CP041614.1\|WP_144045169.1\|1239443_1241216_+\|alkaline-phosphatase	gnl\|CDD\|378184	pfam09423, PhoD, PhoD-like phosphatase.	1.26269e-132
NZ_CP041614.1\|WP_144045164.1\|1233360_1234017_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	9.09594e-135

>NZ_CP041614.1|WP_144045160.1|1228905_1229244_-|hypothetical-protein
MRFKQIISVEMANTTDILSVSFGKEIEVVSNDGSRVADYWQEVAYLVLLDGKAVDDGHTRSNANEVAKKWQIDDDLRLTGLGTHSNKRYWQLPIKLQRQIRQFGSVLPSLAP
>NZ_CP041614.1|WP_144045159.1|1228176_1228698_-|YbaK/EbsC-family-protein
MAIAITLSEYLSKNNVKYELVKHKHTAASLDSSKSAHIPSSHMSKPVVLVNKSGEHIMAIVSAGNRLSLPRLNDITGQEYNLVSEQKLGELFPDCDRGAIPAIGEAYQMKMLVDDSLLATEHVYIEASDHNHLIKMPHKQYVNMLDKTPHGDISGKRIGISRSARRYQRDWRL
>NZ_CP041614.1|WP_144045158.1|1227317_1227737_-|hypothetical-protein
MNILLVVAGALSALAALAHIGCIYFGASWYRFFGAGEQMAIMAEQGSLRPTIITSGIALVLSIWSLYAFSAAGLIGKLPLIRTALIIITAIYLLRGVAGFFFISNPLGRSPEFWFWSSAICLSLGLLHLIGLKQQWASL
>NZ_CP041614.1|WP_144045157.1|1226291_1227131_-|methyltransferase-domain-containing-protein
MLGYYLHSINAKQALEAIAKGLSCIRLSTDLNLSERDFSLSDQSLVLDDDNRLSIDELKRIAKKTQRIYLCRDGDMVPLEDRSSGYYKLVPTSGAPLLEISGVKMHISKGTDPFVSASEMAKQAVSKGDKVLDCCSGLGYAAIAAHRLGASEVLTIELSPEVMGLRAQNPWSNDLGKEGIVQRQGSSFELITTMPAISFDAVVHDPPRFSLAGELYSEEFYREIFRVLRPGGRLFHYTGNPHVVKKGSSFVDGVIRRLKAAGFKHVKKVEHLMGVSAQK
>NZ_CP041614.1|WP_144045156.1|1224541_1226266_+|single-stranded-DNA-specific-exonuclease-RecJ
MIHKIVRRSKVDDTHLPDSFSPLLKQIYASRGTTAEECDLTLSRLLRPNTMKGLDIASKIIADGIRDNRAILIMGDFDADGATSTCVCMLALKMMGASKIDYLIPNRFDFGYGLSPEIVAVAHSKGAELLITVDNGISSIEGVAAAKALGMQVVITDHHLPGKTIPDADAIVNPNQVDCSFASKSIAGVGVAFYLMSALRAELRQRNWYQDQGISEPNLGHLLDIVALGTVADVVALDGNNRILVEAGLQRVRAGRCRAGITALLEVAKRNPAKIVAADFGFAVGPRLNAAGRLDEMALGVETLLCDDMMSARRMAAELDGLNAQRRDLEADMQQEALKSLESVELNEASLPWGIALFQEDWHQGVIGILASRIKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINSRHPGMILKFGGHAMAAGLSLRAKDFETFEQAFDQAVRELLKLEQLTGEFVTDGDLSAGDMNLTIASELRNAGPWGQEFPEPLFDGHFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNIDLKTWPDATIEHAQVVYKLDVNEFRGNQTVQLMVEQIEPM
>NZ_CP041614.1|WP_144045155.1|1223596_1224334_+|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MKFTRIFSLVLAVVIAPFAMATSNTTSDTIANSAELKQKLSETLNVEVHSLNQSPIPGLYEALTDRGVLYISKDGSKLLHGSLYDLDNGMKNLTEAAMAGPRIEMMKPLEDHMLVYKAKNEKHVVTVFTDISCGYCRKLHNQMDEYNDLGITIRYLAFPRRGVPSANADEMEAVWCAADPLKAMTEAKAGKSVKHKQCDAKIAEQYNLGQSFGINGTPAIILEDGSMIPGYQPPKDLLRALEAIN
>NZ_CP041614.1|WP_144045154.1|1222244_1223162_+|site-specific-tyrosine-recombinase-XerD
MAEPAESKQYQPDPLIDTFLDDLWSNRGLSDNTLSAYRTDLRHFDRYIQKLGAGLVQVSQELIRDYLDVRFDKGFARTSSARLMSSLRRFYGFLLLKKLIQADPIARIKSPKLARKLPDSLSEADVDILLNEPDLQDPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGELAVNEVEHYLEGARAELLKGKLSDVLFPSKRGQMMTRQTFWHRIKLYALRAGIVTHISPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPRG
>NZ_CP041614.1|WP_144048841.1|1220801_1222145_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MGQKVQNKQMSMADTLGLGFMTFAFFLGAGNLIFPPLAGFLAGENMTLAMIGFLITAVTLPLITLIAVAKANGKIMGLLPPLAATIFAIAIYIVIGPAFAAPRAGLVAYEMGFKPFLADSNATFMIAGIVLNVSQLIYTLIFFGGAMLMALYPGKLLDSVGKVLTPIMIFLLVGLAISVMVLPGSDVGQAVGDYQTNPLTKGILEGYNTMDTLASLIFGMLIIDILRRKGVSDSKDQTKYLIRAALIAAAGLAFVYISLFYLGASAGELANGADNGGTILTNYVNHEFGSLGQILLAAVVTLACLTTVIGLVTACAEFFNDLLPRISYKMFVVIMSLACATVANVGLSQLISISVPVLYTIYPVAIALVAVTFLTNKFAMPELSHRIVLSVALVFGIIDGLKAAGIDMGLVDFMPMNNEGMAWLLPTGLAIMACLFIKKSKAEPVLG
>NZ_CP041614.1|WP_144048840.1|1219594_1220347_-|methyltransferase
MQNRSDSMPFTFKQFHIDDHNCGMPVSTDAVILGAWAPLTQAKNILDIGAGSGLLSLMAAQRSEGIITAIELDETAASACERNFQASKWDKRFTIEQCAIQDFALQGLDTQVKFDHIICNPPYFKGGTQSKNQLRAKARHTDSLDFSCLIKAITRLLAADGTASLILPSQSMPKFQQELACSELVMTRVMDIADSAAKKPHRHVFNLAHRQAPSPEQSNRVDSSHFCIKESDGSYTQEMIALITGFYLKY
>NZ_CP041614.1|WP_144048839.1|1218248_1219478_-|ATP-dependent-RNA-helicase-SrmB
MLFEDFLLDPILLESLRAMGHKKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAIQHLIDFPRRFGGQPRVLVLTPTRELASQIHRYASHLSTGLDLDIAIITGGMPYGPQEEALKNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRKQTMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNILRQEDVTRTIVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVNVLLATDVAARGIDVDDISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVGKIERYIDQVLKRRFIKDLRPKNKEAKPPGKNKVKPGATKTFSKKNKKKKKK
>NZ_CP041614.1|WP_144045161.1|1229794_1230127_+|zinc-chelation-protein-SecC
MHDLYYKGRIYTRENHIISGYNTKRIVKLGTEKQPLSLVVNSDERKKEVVALVADNGLFAEITVDSAIDENINDLNAVINKPTTTRFDKTPNRNDPCLCGSGKKYKKCCG
>NZ_CP041614.1|WP_144045162.1|1230490_1231522_-|transposase
MTSARRTLIDPESTPFYHIINRCVRRAFLCGEDKLTGKSFEHRRGWIVEKIKALSAIFCIDVCAYAVMNNHYHLVLKIDLDRANSLSNREIIELWCKVTKGHDVATKYMNGDTLIEDERLLLDGLLAEWHERLSSISWFMRCLNEEIARRANREDGCKGAFWEGRFKSQALLDEQALLACMMYVDLNPIRAGIANTLQASDYTSIQERITELSTSDKNTKPNDDKSAATSSEPLKPLAQFDGAAHLATQSGIPFHFCDYLQLIDWTGRAIRPDKKGFIDSTQPKLLNELGIAPEAWITSAKEFRRQYSGMSGRWDAMCAFKKQHNCGLWCKGKASSNALHPAP
>NZ_CP041614.1|WP_144045163.1|1231633_1232197_-|hypothetical-protein
MMYKSLMMTVLILIQVSCASYTKEEIDYVVRDLIGECYKVNVDSFLYSLNRCSSADICYGIQAYTDKSKSIKYKNTPYSHEQVIGDLDFWNDVINRDPNLPGIGKGEYIGTVPAGTEFEFVDIDYKNMPGYREFWAAEVVLKDGEFKEHHVRIPDLSYKQIFPPWTVASPFVNGPVWNKKYIAKCML
>NZ_CP041614.1|WP_144045164.1|1233360_1234017_-|ribose-5-phosphate-isomerase-RpiA
MTQDEMKKAAGWAALQYVEKDTIVGVGTGSTVNHFIDALATMKADIEGAVSSSAASTEKMKALGIPVYDLNSVNELSVYVDGADEINERMDMIKGGGAALTREKIIAAVAEKFICIVDNTKQVDILGEFPLPVEVIPMARSYVARQLVKLGGDPVYREGCLTDNGNIILDVYNMKIMKPKELEEQINQIVGVVTNGLFANRGADVLLVGTPEGVKTVK
>NZ_CP041614.1|WP_144045165.1|1234685_1235636_+|DUF808-family-protein
MAGASLLTLLDDIAAILDDVALMSKVAAKKTAGVLGDDLALNAQQVSGVSADRELPVVWAVAMGSLRNKCILVPAALLISAFIPWAVTPLLMFGGLFLCFEGFEKLHHTYEKRKKKAAALAQGGAAHDVDDELPHIDDLGEYEAKKVKGAIRTDFVLSAEIIAITLGVVAESSFLTQVVTLSVIALVMTIGVYGLVAAIVKMDDVGLYLSLRKGASLLTRCGRWLGAKMVNAAPYLMRGLTIVGTIAMFMVGGGILTHGLHWISVQIETVAALVDQLAIIGPVLSFLTPSLLNTIFGVIAGALALLVMSGVQKLRT
>NZ_CP041614.1|WP_144045166.1|1235834_1236494_+|peptidylprolyl-isomerase
MNKFAVSIASSLVLAGVLTACGGGSDDSTTPPPITPPTPTPELAQDYCYTMSTSMGDISLAIDATNTPITGENFKQYVDTGFYDGLIFHRVIHQFMVQGGGFKSGPMSKAGNDPIVNEAGVGISNLRGTLAMARTSDPDSATSQFFINSVDNAFLDKANSSDGHGYAVFGQVIEGIEIIDQIDIVDTANAVTESGGILTDVPVEDIVINSIAQMACPAT
>NZ_CP041614.1|WP_144045167.1|1236536_1237424_-|LysR-family-transcriptional-regulator
MDLRVIRYLIEIVDSGGFAKASERVHITQPALSKAIQQLEHELEVTLLERGKRGTRVKLTPSGELVYRHGQTLLANKQALLNELAAQRGLTSGQLTLGLAPLGSAELFAPVIAKYRDTYPKIEMELLVRGSVEQKEALIKGEIELATGIIALNKEFEGILVRDEPMVVILPKHHVLASEKSLRLEQISEEPQIMFEPGFSLHSMVLDSCEQAGFTPKNITRISQAEFGIALVAAGAGNMLLPKMIAERHRVAGVVSVPLIGSDLRWKMSLFWRKEQALSFAAKAMIEMIKQTSPV
>NZ_CP041614.1|WP_144048842.1|1237635_1238037_+|CidA/LrgA-family-protein
MLQTLVQVSLFCLLAVICVQAEQYFNLPIPGSVIGLAIVLLLLLTKTIPEHRVSLGSAWLIAELLLFFIPPVVSVIKYQSLFENYGVQLIVMLVLGTVFVLVGTGFVVDRVFRFERRMNRQRAQALLAPGMEG
>NZ_CP041614.1|WP_144045168.1|1238807_1239242_-|CBS-domain-containing-protein
MKVQDIMTREVVCISDQASLKDAHALMTNRNVRHLPVISEQDSSLVGILTHKKMVATVMALVNKYGSGALDRRERAQTVESIMDKHYQHLTADEPLPIVVEYFIDNKLGCLPVINAQGKVEGIVTSSDFVKLCAKLLKLKPEAA
>NZ_CP041614.1|WP_144045169.1|1239443_1241216_+|alkaline-phosphatase
MKRRFTRRDFLEMSAKGVGAAVVSYGLMGCSDSNGSSDDAVKAEFLHGVASGDPSHDAIILWTRVTPEVEGELTVAWELATDTDFSNLVTNGETTTSAERDYTIKVDATGLDAGTQYFYRFKQGEAVSEVGRALTLPQGAIDQVKLAVLSCANFPAGHFNVYALAAQQEGLDAVIHLGDYIYEYARGEYASEHAAELGREVLPAGELFTLGDYRTRYAQYRTDPSLTGLHAKVPFITVWDDHEVANDTWKDGAENHNEEDGDFDARKQGALQAYFEWLPIRPWREGNHEEIYRSFSFGDLVDLHMLDTRVLARDKPLDYVDYIDPVTKAMDSQKFMAAVTGTERTLLGTEQLQWLQSSLLTATGKWQVLGQQVLMGSMMLPAAIAMQQLSVSEFGELAALAKIAARWEAKDPTVTTFEYTFLIENQHRLTPEAMALLQMPAVPYNLDAWDGYAYEREVVLATAKSIGCNLVVLAGDTHNAWANELMDSHGDPVGVEFATSSVSSPGLEYYLGIPEDQQVQTEAGIKEMVEGLKYTNLRDRGFMVLTFTAEQVRSDWHYVDTILSADFSEDMSKQQACVCAIGTAQVVSVS

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Crispr_ID: NZ_CP041614_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_6

1434585-1434690

Orphan

Consensus_repeat	Method
CATCTTTCTCAGGATGTTAAACCGAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_6

>merge|NZ_CP041614|6|1434585-1434690|CRISPRCasFinder
CATCTTTCTCAGGATGTTAAACCGAGTGCAGTGTTAAGTGAGGTCTAGTGCTTAGGTTCAAGTCTCATTATTCACTAGCATCTTTTCTCAGGATGTTAAACCGAGT

>NZ_CP041614|6|6|1434585-1434690|CRISPRCasFinder
CATCTTTCTCAGGATGTTAAACCGAGT	GCAGTGTTAAGTGAGGTCTAGTGCTTAGGTTCAAGTCTCATTATTCACTAGC
ATCTTTTCTCAGGATGTTAAACCGAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144045302.1\|1436894_1437299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144045303.1\|1437359_1438307_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP041614.1\|WP_144045296.1\|1427274_1427751_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP041614.1\|WP_144045298.1\|1428929_1430354_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP041614.1\|WP_144045310.1\|1446505_1446901_+\|invasion-protein	unknown	unknown	gnl\|CDD\|377264
NZ_CP041614.1\|WP_144045304.1\|1438380_1439238_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP041614.1\|WP_144045297.1\|1427740_1428784_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224616
NZ_CP041614.1\|WP_144045294.1\|1421910_1422411_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369304
NZ_CP041614.1\|WP_144048856.1\|1430443_1430686_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275272
NZ_CP041614.1\|WP_144045301.1\|1433110_1434202_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP041614.1\|WP_144045299.1\|1431054_1432191_+\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	unknown	unknown	gnl\|CDD\|181564
NZ_CP041614.1\|WP_144045300.1\|1432395_1432980_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP041614.1\|WP_144045295.1\|1424754_1426299_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP041614.1\|WP_144045307.1\|1442587_1443430_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP041614.1\|WP_144045306.1\|1440179_1441430_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP041614.1\|WP_144045305.1\|1439238_1439910_-\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|377063
NZ_CP041614.1\|WP_144045308.1\|1444009_1444960_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144048855.1\|1422840_1424664_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP041614.1\|WP_144045309.1\|1445072_1446086_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|238113
NZ_CP041614.1\|WP_144048857.1\|1436477_1436891_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144045303.1\|1437359_1438307_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP041614.1\|WP_144045296.1\|1427274_1427751_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	1.27688e-64
NZ_CP041614.1\|WP_144045298.1\|1428929_1430354_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP041614.1\|WP_144045310.1\|1446505_1446901_+\|invasion-protein	gnl\|CDD\|377264	pfam04247, SirB, Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.	8.49337e-40
NZ_CP041614.1\|WP_144045304.1\|1438380_1439238_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	2.56263e-174
NZ_CP041614.1\|WP_144045297.1\|1427740_1428784_-\|AAA-family-ATPase	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	1.56516e-161
NZ_CP041614.1\|WP_144045294.1\|1421910_1422411_+\|hypothetical-protein	gnl\|CDD\|369304	pfam07295, DUF1451, Zinc-ribbon containing domain. This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.	3.98751e-60
NZ_CP041614.1\|WP_144048856.1\|1430443_1430686_-\|hypothetical-protein	gnl\|CDD\|275272	TIGR04479, bcpD_PhpK_rSAM, radical SAM P-methyltransferase, PhpK family. Characterized members of this family are B12-binding domain/radical SAM domain enzymes that use methylcobalamin as a methyl donor to methylate a phosphorous atom during the biosynthesis of natural products such as bialaphos and phosalacine. These syntheses create an extremely rare C-P-C bond. All members of the seed alignment derive from genomic regions that include a non-ribosomal peptide synthase. Note that a single organism, Pelosinus fermentans JBW45 from Cr(VI)-contaminated groundwater, has eight additional homologs of unknown function that score between trusted and noise cutoffs of this model. [Cellular processes, Toxin production and resistance].	0.00392318
NZ_CP041614.1\|WP_144045301.1\|1433110_1434202_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP041614.1\|WP_144045299.1\|1431054_1432191_+\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	gnl\|CDD\|181564	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional.	0
NZ_CP041614.1\|WP_144045300.1\|1432395_1432980_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	6.3339e-104
NZ_CP041614.1\|WP_144045295.1\|1424754_1426299_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP041614.1\|WP_144045307.1\|1442587_1443430_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.91747e-124
NZ_CP041614.1\|WP_144045306.1\|1440179_1441430_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP041614.1\|WP_144045305.1\|1439238_1439910_-\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|377063	pfam03550, LolB, Outer membrane lipoprotein LolB.	3.51813e-47
NZ_CP041614.1\|WP_144048855.1\|1422840_1424664_+\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.76468e-69
NZ_CP041614.1\|WP_144045309.1\|1445072_1446086_+\|trypsin-like-serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	7.23985e-12

>NZ_CP041614.1|WP_144045301.1|1433110_1434202_+|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTKAGIEASNFPFCTIEPNTGVVPVPDSRLDALAQIVNPERVIPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFEDENIVHVANKISPAEDIEVINTELALADLDSCERAIHRQAKRAKGGDQEAKFEVSVLEKMLAPLNEGTMLRSLDLSVEEKAAVAYLNFLTLKPTMYIANVADDGFENNPHLDTVREIAAKENAVVVAVCASIESELGEMDPEDRDEFMADLGLEEPGLDRVIRAGYDLLTLQTYFTAGVKEVRAWTVAIGATAPQAAGVIHTDFERGFIRAQVMAYDDFITYKGEAGAKEAGKLKVEGKSYIVKDGDVMHFLFNV
>NZ_CP041614.1|WP_144045300.1|1432395_1432980_+|aminoacyl-tRNA-hydrolase
MSNIKLIVGLANPGEKYAQTRHNAGAWYVQELARICGATLIADSKYYGLTARVNLHGKDVRLLIPSTFMNLSGKSVGAMANFFRIQADEILVAHDELDMPPGVAKFKLGGGHGGHNGLKDIIASMGNDKGFYRLRIGIGHPGDRNQVSNYVLGKASAAEQTQIETVLDEAVRSTELLFTEDMAKAMNRLHTFKA
>NZ_CP041614.1|WP_144045299.1|1431054_1432191_+|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase
MIGAATAIGLAQLGLSVTVIEAFRPEAYCSEQAIDLRVSAISLATETLLERLGALESLTQMRRAPYLGLETWELEGCITRFHANAIGVSHLGHIVENRLIQLALWQEFESLDNLELLCPRSLDSFSRSENGVCVTLDDGQRLDAKLLVGADGANSQVRTWAGIGLTGWDYAQSAMLINIETAIEQQDVTWQQFTPKGPRSLLPLPGNNASLVWYDDASRIAQLSKLSNTALAQQIKMHFPERLDRQFEVLNKGSFKLTRRHAQSYFSDNLVILGDAAHTINPLAGQGVNIGFKDVDALISVISNKLSQQEAWWSNAALSEYQTRRYRDNQLMMSAMDLFYAGFSNDLLPLKVLRNAALKFANIDSPIKKQVLKYAMGL
>NZ_CP041614.1|WP_144048856.1|1430443_1430686_-|hypothetical-protein
MEVITVTYRSPIDYALYQYTTELLAYFRLQIQADIYTQARAGSMQMAQSIHRQLQADKSARKAPNTLNTWQGNTYSPQYF
>NZ_CP041614.1|WP_144045298.1|1428929_1430354_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSKKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTDDAAEADVLLLNTCSIREKAQEKVFHQLGRWKKLKDKNPNLIIGVGGCVASQEGKMIKERAQCVDIIFGPQTLHRLPEMVDQVKQGGKAVIDISFPEIEKFDRLPEPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPVDDVILEVAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIAAIDGIDRVRFTTSHPIEFSQDIIDVYEDTPELVSFLHLPVQSGSDHILTQMKRGHMAIEYRSIIRRLRKARPDIQISSDFIIGFPGESKQDFADTMKLIEDVAFDHSFSFIYSARPGTPAADLPDDVTLAEKKERLAILQERITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFEADPKHIGSFVDVEIVDVYANSLRGTFIRGEDEMDLRRSLRPSDIVLKHKKDDELGVTQYIP
>NZ_CP041614.1|WP_144045297.1|1427740_1428784_-|AAA-family-ATPase
MSNKLTTLNLYLEPSEIHRLASLCGPFDDNIKQLERRIGVEITYRNNHFQIVGQARNCLTSSNLLRALYVETQPIRGNTQDLEPDTVHLAIQEAVALEAEVPRDDKEFYIKTKRGVIKPRNPNQSDYVANIMRHDITFGVGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMMGFEKVERLIEKNIIEVAPLAYMRGRTLNDAFIILDESQNTTLEQMKMFLTRIGFNSRAVITGDITQIDLPKSQKSGLRHAIEVLSKVEEISFNFFQSKDVVRHPVVARIVEAYEEHEQKAQQAKEKRDNQYKLQEKTLNES
>NZ_CP041614.1|WP_144045296.1|1427274_1427751_-|rRNA-maturation-RNase-YbeY
MNLKHKHLELDLDLQVAIENESLPSQTDFELWVRIALRDTMTQAELTIRIVDEAESQTLNSSYRGKDKPTNVLSFPFEAPPEIDIPLLGDLIICAPVVECEAKQQNKSLQAHWAHMVVHGCLHLLGYDHIQDAEAEEMESLETQLIEKLGFNNPYKEQ
>NZ_CP041614.1|WP_144045295.1|1424754_1426299_-|apolipoprotein-N-acyltransferase
MLNKLRAFAHHEKIRLVLAYLAGASTALAFAPYGLWPIYLIATVFALHQSSGLSPRAGLTYWLSFGFGCFSVGISWIHVSMSTYGGIPLIASMALMALLALYLALYPALTGYLLQKISPTTSIMRNIILFPALWTLTEWLRGWVLTGFPWLWAGYSQTEGPIKVLASVIGALGLSFVLALIAGVFALCLQKRWRPAVIIFPLLGLATYLSPMLSSVEPDGETVKVAMVQGNIPQSMKWEPETLWPTMSKYMDLSRPLLDADIIIWPEAAIPAPEYMVSEFLDNASKVANLNNSAIITGIISHQQDNFYNSLIVLGNHNSEHQSQADYIGDGSNEFKKHHLLPIGEFVPMESLLRPLAPLFNLPMSSFSRGAYQQPNLNALGHQIAPAICYEIAFPEQLRANVNEGTELLLTVSNDAWFGSSNGPLQHMEIAQMRSIELGRPLVRATNNGVTAVVDELGNITHQLPQFETGVLVADIPLVKGQTSFSKWGQSPILILSAMLLGLAILRQRWLLKK
>NZ_CP041614.1|WP_144048855.1|1422840_1424664_+|HAMP-domain-containing-protein
MLSLACLSGYQYFQVKQQIYQQVSGSVDELASSMSNNIEAIMAEKKSITEYAASMLGTDLSDEHFLEVLDQPIIKQHFILSGMGLESGHFVGNDPSWNPGSSYDPRQRTWYQETKNQGEFLFTAPYADAGSGEILVSAAMPLSENGEFKGALFTDISLKSLADISNRANLFGAGYAFIVGKKGEFIAYPDSSKNGRPMSQVFGSQLDTSMASSQLDIDGKMHLVIFRPLSGLDWSLGIVLDEGVIFSAADDLRRDAILYSVLALIVAILLMSGIIRQLMKPLDILNEAMRDVSTGEGDLTRRLSTDSDVEFATLAGNFNNFVIKLQDLIQQVKSIGSEVSQGTQATARGASEALEAMGQQTQEVEQLATAMHEMSVTASDVANNAQSAAYAVQQADNAVSEGVTAVVQTTESIEQLSAQIDNAANAVKELEADTVSIESILGVINAIAGQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAARTQQSTSEIKEKIEKLQVGVATVVSVMDDSRQTTVTTVEKAQVANETLVKIRSSIEEITDMNLQIASAAEEQSQVAEEMNRNTSNIRDLSTQVANNSEQANEAMRNQLEQVKRQEQLLNQFIV
>NZ_CP041614.1|WP_144045294.1|1421910_1422411_+|hypothetical-protein
MSKRSTELLSVYEALLAQVKSDYSEDNSITIKELFHIVTNSKDFLSIKDRAKDNELALVEQFLKRDIANFLHEKNDLDLSHSPTMITVENTLWHWLSSITDRSQIEWHEVLQDFKHQGHYQSGEIVNQGNMVCTHCGHEMRIEFPGIIPDCPQCDKSDFIREALAP
>NZ_CP041614.1|WP_144048857.1|1436477_1436891_+|hypothetical-protein
MSGFLYAAPSELVIDSKVKPKSYERYIRAVHKEIPASKNIKFTRFAIIEGMLNTKGIAWVFEGEGDGYILARFDYRGDTNVMRIEYDDKLVQLKYHAALGDYICENNLDDICYKNSRGYYNYIKNLRNSIKRELAKG
>NZ_CP041614.1|WP_144045302.1|1436894_1437299_+|hypothetical-protein
MKVKISIILILLFSLSSQAYELKFYANPVPFSPYVEDIDGLLEPAVSRNHWTYRVEEGRRYAHLEYKSYRIEVELLVENGGVSIVELSVARPECKRKCNIDQDKVDAWLVGMRRHIALAVTKAFREDALKQIYL
>NZ_CP041614.1|WP_144045303.1|1437359_1438307_-|ribose-phosphate-diphosphokinase
MPDIKLFAGNATPALAKKIADRLFCKLGNAAVGVFSDGEISVQINENVRGADVFIIQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLLEDMLSKNLDNPVVVSPDIGGVVRARAVAKLLDDSDLAIIDKRRPQANVAQVMHIIGDVQGRDCIIVDDMIDTGGTLCKAAEALKEHGANRVFAYATHPVFSGNAAKNIAESVIDEVIVTDTIPLEKDIEALEKVTQLSMSAVLAEAIRRVSNEESISAMFKH
>NZ_CP041614.1|WP_144045304.1|1438380_1439238_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MTDTNLSLGWPAPAKLNLFLHINNQRDDGYHELQTLFQFVDYCDYLDFRVTQSSDLTLHSNMNNAVADCDNLILLAAKSLQKFCNCQKGAEIWLDKRLPMGGGIGGGSSDAATTLVALNALWDTQLSKDQLMVLGLELGADVPVFINGLSAFAEGVGEKLIPFAPKEHWYLILIPDVHVSTAAVFQNPQLTRDTPKLDIDSLMSAPWKNDCQDFVVKRYPQVANTLGWLIEYAPSRMTGTGACIFGQFELQHQALEVLAKLPKDMRGFVAKGTNISPLESHLTRL
>NZ_CP041614.1|WP_144045305.1|1439238_1439910_-|outer-membrane-lipoprotein-LolB
MNNLSYITKTPLLLVLLSLSLLSACTTTPTNLVPIQVDKVSQANAWEMRGKLAVKTPEDSFSTNLYWLHTQTKNEFKLTTMLGTTLLSLTTEHGMARLEVDGKTYEHHDAQQLLTNVTGWSIPVDALPLWITGQVSSDDEVSSFDEKNRPVSLFTPLETPPWQVEFLKWQHQSGAQIPRLLQLKRVDLRLKIQVTQWQALANNDLVPSTNQINKSTKIDASTR
>NZ_CP041614.1|WP_144045306.1|1440179_1441430_+|glutamyl-tRNA-reductase
MSLVAIGINHKTATVDLREKVAFSPDKIHEAMKSLARHTKTGEAVIISTCNRTELYTNTADEAEVVRWLEEYHQLSHEEVESCLYKYHGQAVVQHLMRVSSGLDSLILGEPQILGQVKQSFAKAREAGTVAITMDRMFQNTFSVAKKVRTETDIGAAAVSVAFAAVSMAKHIFSALSATKVLLIGAGETIELVARHLKDNGVDSMVVANRTLSRAEGMCEEFGATAITLEQIPDFLAQADIVISSTASPLPILGKGMVEKALKQRRHQPMLLVDIAVPRDIEAEVADLDDAFLYTVDDLQSIIEQNMASRREAAEQAEIIAEEESHLFMEWIRSLESVDSIREYRSQSMAIKDELVERAIKKLAQGGDSEQLLLELANKLTNKLIHAPTQALTAASRQGDLNSIGQLRTALGLDKN
>NZ_CP041614.1|WP_144045307.1|1442587_1443430_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MHQTLAGALDWASPQLVDVSDTPKLDAEVMLLHIIHKQRGYLYTWPDERLTSDQVVDYTKMVQRRVLGTPIAHIVGEREFWSLPFMVNPTTLIPRPDTEILVETALNLPLAENAQVLDLGTGTGAIALSLAYEKKEWQITAVDKIIEAVALAKANREHLKLQQVQIIQSDWFDSVTCYDFNLIVSNPPYIDETDAHLDQGDVRFEPQSALTAGEAGFADLYHIASSARDYLAPGGYLLLEHGYQQAIPLRKKMIELGYENVATVRDFGSNDRCTLGRFPR
>NZ_CP041614.1|WP_144045308.1|1444009_1444960_+|hypothetical-protein
MNFKISFTALVLLTTFNATAYEQYSVFQDNMDINTVLSNVERLTQVRKNVAGNISVAGTYRYDHNGRVTQRDYADSRFDYVYNSDGLLITASALMKHGVINSYVRHTKINFISEYTYNDQGKVIRENKQVFNGLTSSLDSVPISTYRIKYIYDERGMLIKRTQITKSGDDLGNLEFHYTYHNDGKLRKIQEIKKIRPREKSTLLFQYHNNGEIKKATQTIFGKGTKTIEMEYIDDGSLIYGVYYADPVKEWKVDMDFFGLSFYPIKKLTQTVEDQVTYYKYLYKNNDGDLLPDSLTLELTLPTGVIYDLNYIMENK
>NZ_CP041614.1|WP_144045309.1|1445072_1446086_+|trypsin-like-serine-protease
MKKTNIGLPSVVLFSALCGIYSPLSLAVEGNDVAASDAPYMVYLKDAHCSGTIIAPKTVLTASHCVSQVTVGSYVYLLHSRGEDFSHNGVRVKVVKDYTATHIYRINGEFDRSKFDDIAILELESMPEGVTWLPVSASPIPLEAEVYPIGYSTSNLKRMPIPARVAAKAHSPDYEREAFMRFCPDSIYFSREYFTQEYPFSSVSNCSWRETSHEKLVESGTYIPNQHSITIENPPLDPSDTRWSMNELGTVETKYSTFRGDSGGPLIFEGKIYGVASSGTDSYSQIHNVATYYAGFTRPGIIQWIVDTVKDIQSRSDVSAMSHSLDPEQRAIIFPDY
>NZ_CP041614.1|WP_144045310.1|1446505_1446901_+|invasion-protein
METLNSFYPAIKHVHLTFVAASVLFFLVRFVLHMRQSPIMDKKLVKIAPHVIDTLLLLSGLTLCFVIQQYPFVDPWITEKLGAVVAYILLATISLKANKGKLFKVFAAFGAIAWVVYAAKIAIFKQAVLMV

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Crispr_ID: NZ_CP041614_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_7

1934758-1934865

Orphan

Consensus_repeat	Method
ACGTTTAAATAAATGCTCTGATGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_7

>merge|NZ_CP041614|7|1934758-1934865|CRISPRCasFinder
ACGTTTAAATAAATGCTCTGATGTGATCCTTACCCTAGATGATTTTCTCGATGACTTATCAGGCCTTGATAAATGTCCTATGACGTTAAAATAAATGCTCTGATGTGA

>NZ_CP041614|7|7|1934758-1934865|CRISPRCasFinder
ACGTTTAAATAAATGCTCTGATGTGA	TCCTTACCCTAGATGATTTTCTCGATGACTTATCAGGCCTTGATAAATGTCCTATG
ACGTTAAAATAAATGCTCTGATGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144045663.1\|1944362_1944821_+\|aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|234859
NZ_CP041614.1\|WP_144045652.1\|1924803_1925706_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NZ_CP041614.1\|WP_144045658.1\|1935189_1938300_+\|putative-selenate-reductase-subunit-YgfK	unknown	unknown	gnl\|CDD\|236630
NZ_CP041614.1\|WP_144045662.1\|1943430_1944363_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|223614
NZ_CP041614.1\|WP_144045650.1\|1921982_1923194_+\|YgeY-family-selenium-metabolism-linked-hydrolase	unknown	unknown	gnl\|CDD\|183836
NZ_CP041614.1\|WP_144045664.1\|1945192_1945987_+\|molybdopterin-dependent-oxidoreductase-FAD-binding-subunit	unknown	unknown	gnl\|CDD\|182083
NZ_CP041614.1\|WP_144045667.1\|1950498_1951815_+\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419
NZ_CP041614.1\|WP_144045666.1\|1949020_1950433_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP041614.1\|WP_144045655.1\|1931578_1933174_-\|EF2563-family-selenium-dependent-molybdenum-hydroxylase-system-protein	unknown	unknown	gnl\|CDD\|132352
NZ_CP041614.1\|WP_144045651.1\|1923310_1924711_+\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|236240
NZ_CP041614.1\|WP_144045660.1\|1942008_1942491_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP041614.1\|WP_144045659.1\|1938311_1939640_+\|putative-aminohydrolase-SsnA	unknown	unknown	gnl\|CDD\|235963
NZ_CP041614.1\|WP_144045665.1\|1945989_1948860_+\|molybdopterin-dependent-oxidoreductase-Mo/Fe-S-binding-subunit	unknown	unknown	gnl\|CDD\|182084
NZ_CP041614.1\|WP_144048893.1\|1919403_1920591_+\|knotted-carbamoyltransferase-YgeW	unknown	unknown	gnl\|CDD\|235961
NZ_CP041614.1\|WP_144045649.1\|1920670_1921876_+\|diaminopropionate-ammonia-lyase	unknown	unknown	gnl\|CDD\|236186
NZ_CP041614.1\|WP_144048892.1\|1917274_1918987_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226350
NZ_CP041614.1\|WP_144045661.1\|1942484_1943336_+\|dehydrogenase	unknown	unknown	gnl\|CDD\|224238
NZ_CP041614.1\|WP_144045653.1\|1925820_1927452_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237198
NZ_CP041614.1\|WP_144045654.1\|1927461_1931103_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NZ_CP041614.1\|WP_144045656.1\|1933207_1934140_-\|putative-selenium-dependent-hydroxylase-accessory-protein-YqeC	unknown	unknown	gnl\|CDD\|274467

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144045663.1\|1944362_1944821_+\|aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	1.94237e-71
NZ_CP041614.1\|WP_144045652.1\|1924803_1925706_+\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NZ_CP041614.1\|WP_144045658.1\|1935189_1938300_+\|putative-selenate-reductase-subunit-YgfK	gnl\|CDD\|236630	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional.	0
NZ_CP041614.1\|WP_144045662.1\|1943430_1944363_+\|aspartate-carbamoyltransferase	gnl\|CDD\|223614	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism].	1.77455e-157
NZ_CP041614.1\|WP_144045650.1\|1921982_1923194_+\|YgeY-family-selenium-metabolism-linked-hydrolase	gnl\|CDD\|183836	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase.	0
NZ_CP041614.1\|WP_144045664.1\|1945192_1945987_+\|molybdopterin-dependent-oxidoreductase-FAD-binding-subunit	gnl\|CDD\|182083	PRK09799, PRK09799, putative oxidoreductase; Provisional.	7.61504e-124
NZ_CP041614.1\|WP_144045667.1\|1950498_1951815_+\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0
NZ_CP041614.1\|WP_144045666.1\|1949020_1950433_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.60845e-152
NZ_CP041614.1\|WP_144045655.1\|1931578_1933174_-\|EF2563-family-selenium-dependent-molybdenum-hydroxylase-system-protein	gnl\|CDD\|132352	TIGR03309, matur_yqeB, selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.	1.01135e-133
NZ_CP041614.1\|WP_144045651.1\|1923310_1924711_+\|dihydropyrimidinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	0
NZ_CP041614.1\|WP_144045660.1\|1942008_1942491_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	9.69651e-57
NZ_CP041614.1\|WP_144045659.1\|1938311_1939640_+\|putative-aminohydrolase-SsnA	gnl\|CDD\|235963	PRK07203, PRK07203, putative aminohydrolase SsnA.	0
NZ_CP041614.1\|WP_144045665.1\|1945989_1948860_+\|molybdopterin-dependent-oxidoreductase-Mo/Fe-S-binding-subunit	gnl\|CDD\|182084	PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.	0
NZ_CP041614.1\|WP_144048893.1\|1919403_1920591_+\|knotted-carbamoyltransferase-YgeW	gnl\|CDD\|235961	PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family protein; Validated.	0
NZ_CP041614.1\|WP_144045649.1\|1920670_1921876_+\|diaminopropionate-ammonia-lyase	gnl\|CDD\|236186	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.	0
NZ_CP041614.1\|WP_144048892.1\|1917274_1918987_-\|AAA-family-ATPase	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.64882e-172
NZ_CP041614.1\|WP_144045661.1\|1942484_1943336_+\|dehydrogenase	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.23397e-56
NZ_CP041614.1\|WP_144045653.1\|1925820_1927452_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|237198	PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional.	0
NZ_CP041614.1\|WP_144045654.1\|1927461_1931103_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NZ_CP041614.1\|WP_144045656.1\|1933207_1934140_-\|putative-selenium-dependent-hydroxylase-accessory-protein-YqeC	gnl\|CDD\|274467	TIGR03172, Uncharacterized_protein_YqeC, probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems. [Unknown function, General].	3.85822e-53

>NZ_CP041614.1|WP_144045656.1|1933207_1934140_-|putative-selenium-dependent-hydroxylase-accessory-protein-YqeC
MMLFDAIYNQDHASTQLLALVGGGGKSTTAFVLARQAKARGLTVLITTTTKMYLPKSDQFDTIIDAENLSYQIDSHDSSASQAAPRAFIFTTVSPGCGDTTESAPSQTRHYTPSSWPTANICFCYQDIIEHPENKEKNKVTGISFAMLDKLKSAALFDLIIIEADGAKHLPIKAPSGHEPCIPSSVDTVIAVTGCEVINQKIDPRQIHRWTDFQHITQCKTSEILDQQVLGRLIAHEDGMFKHAPNRAKRVWIINKVELSPNYIAVKALAMALLRQEMQLDVICLANMQASIPIKEVMTKRSITMSDEDG
>NZ_CP041614.1|WP_144045655.1|1931578_1933174_-|EF2563-family-selenium-dependent-molybdenum-hydroxylase-system-protein
MNIFAHAAELEELNIPFALANILETSGSAPRHQGQMIIKADGTTLGTIGGGMIERYVIEQAIEAIQQRDPRVVKGRMTRTGPDSMDMDCGGTMSIHIDVFGLKAPLILIGAGHVNQAVAQAAHVLGFDITVVDTYADSLAEENFPRGCKQVFAETMEQAIDKLTITDQTYLVIASNHEDKDAITKIIKQETKYIGLLASKRKLQTLFSHLKNIGISDERVQAVYSPIGFSIGAETPEELAVSIMGEILKVKNGAAGGLMKDDPRINRKRLVLIRGAGDIATGVAIRLHNVGFKVVMTDIAKPEVIRRSVSFAQCLFDDTATVEGITAQKANSYNSIFKLIDKGMIPVLVDEECKTAAKLQPNFVVDAILAKRNLGTTKALAPHTVALGPGFMAGVDCDAVIETNRGHHLGRIIYQGETAPNTGIPGNIGGYTHQRVLRAPEAGTMRCHVSLGDIVKEGELIAQVNDTPVIAPMSGKVRGLLNEGLEVHQGLKIGDIDPRGDKADHLSVSDKARAIGGSVLEALLHLDMRSI
>NZ_CP041614.1|WP_144045654.1|1927461_1931103_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MKTTELNSVTASMHTCDGNEAAAHIAYRVSEVCAIYPITPSSTMAELAEEWAAKDIRNIWQGIPLIASMQSEGGAAGTVHGSLQSGALTTTFTASQGLLLMLPNMYKIAGELTATVFHVAARSLAAQGLSIFGDHQDVMAARGTGFALLASSSVQESHDMAMVAHAATLDARIPFMHFFDGFRTSHEVNKIALISDSDIRTMIDDKLVRAHRERGLSPNKPFIRGTAQNPDVYFQGRETVTAFYNKTPEIVQACMDKLGDITGRYYKLIEFYGDEAAERVIIAMGSGIETVKETVDALNRAGEKVGLLQVRLYRPLSAEYLFAALPKTVNKIAVLDRTKEPGANGDPLYQDILTSLVDSYSEQDNLSQMPMLVAGRYGLSSKEFTPAMVSAVFDNLAKDKPKKHFTLGIIDDVCHSHLEFDASYDIESKDVVRAIFYGLGADGTVGANKNTIKIIGEDPDYFAQGYFVYDSKKSGSQTESHLRFGNHAINSPYLIQSANFIACHQATFVDTTDMLAKATENAVFLLNTQASADKVWDTLPAKMQSQLIEKKMSMHVIDAYKVGEDTGMGKRINTIMQTCFFALSGVLEKDVAIDKIKKSIVKTYTHKGPKVIEKNFAAVDHTLAHLEEVKIPASVTAKVIDRPIVDEKAPDFVKQVTAKMMAGKGDLIPVSMLPVDGTYPSGTTQWEKRDIALQIPVWEETACIQCGNCSIVCPHGAIRAKFYDKSLLNKAPDGFKSHTITARGFPDTRYTLQVYAQDCTGCTLCVDACPMVIQEATDTSPEVKAINMQPKGPYMEQAKKDLDFFTSIPYNDRSRVDFSHVRGAQFLQPLFEFSGACSGCGETPYLKLVSQLFGDRLMIANATGCSSIYGGNLPTTPWAKNDAGRGPAWANSLFEDNAEFGFGFRLAAIKQQEMAKQLLVRISQDPQGDLRPELIDKLLNCEQASESDIQAQIKRVDELKLELEKHGTEDALNLISVADQLIRRSIWIIGGDGWAYDIGSSGLDHVLASGADVNVLVMDTEVYSNTGGQMSKSTPLGAVAKFAAAGKQTTKKDVAMQAISYNNVYVARIALGGDPQQTLLAMREAEAYKGPSIIIAYSHCIAHGIDMEKGLRQQQLAVKSGHWPLFRYNPQLREVGENPFSLDSLRPSISLKEYRSHEARFNMLTRSDPDLAESLTNRAQHVLERRWKLYEEIASRPGGAVAAHVEVDVEDIH
>NZ_CP041614.1|WP_144045653.1|1925820_1927452_+|FAD-dependent-oxidoreductase
MRHTSKDMTLPPDLTTKKGSGAVRSKFPIYANSLPPCNHACPTGSNIQEWLSLAQEEEYEAAFQALIKNNPMPAIHGRVCYHPCESACNRNDVDQSVSIHAVERYLGDQAIAHKWPVRFEAKPSGKRVLIIGAGPSGLATAYHLKRKGHDVEIRDSAPMAGGMMHFGIPAYRLPRKVLDQEIQRIQDMGIKIVLNTKVESILAEKVSGQFDAVFLAIGAHIGRGVDIPNADPEKVTDAVSYLRDVELGKAPKLGNVVVVYGGGNTAMDAARTAKRFGAQVKVVYRRDRANMPAHDFECVEAMEEGVEFHWQRTINQIDGQQFTLEKMAINAEGKPQPTGEFETLQADSLILALGQNIDTKLTKAIPDVEHKWDGSVVVNDNMMTGYKGLFAGGDMVPCDRTVTIAVGHGKKAAANIDAFLQGRIFTKVEKTPLIKLDKLHLWYKTDAEQSEQPATDPVERRTNFDEVLGGLTEQEALYEAQRCYSCGNCFECNGCLAACPHGAITYLGKGKGYKIDYDKCTGCHACYSQCPCHAIEMVAAEQA
>NZ_CP041614.1|WP_144045652.1|1924803_1925706_+|carbamate-kinase
MKPIAVVALGGNALLRRGDAPTYANQLANIKIAAAAIAEIAKDYRVAIVHGNGPQVGLLALQNLAYTKVSPYPLDVLGAETEGMIGYMLAQEVQNLMPDREVSTLLTRIEVDANDKSMLDPTKFVGPVYNEDEAGVLAEANNWIMKRDGEFIRRVVPSPKPINILDKHAIDTLLAADEVVICCGGGGIPVCKSDLGYVGVEGVIDKDLSATLLAKQLNAEKLLILTDADAVYLDWGTENQRALRNATPAELSQYDFPAGSMGPKVEAVSDFAAFGGKAYIGALEHGLDVLAERSGTCVSN
>NZ_CP041614.1|WP_144045651.1|1923310_1924711_+|dihydropyrimidinase
MTSTAILIINGTLVDAHGQSKKQLLLIDGKIAKVSETITDTPAETKIIDAQGLYVMPGGIDVHTHFNIDVGISRSIDDFYTGTRSAACGGTTMIIDHMGFGPKGCSLGHQLAVYKEYAQDKAVIDYSFHGVIQHVDEQVLADMQTMVEKEGISSFKLYLTYGYKLDDDSTLKAMARLNELNALTTVHPENDAAIAQRRAQLIKAGKIAPKYHAVSRPLECEAEAIARTINLASLSGNAPLYIVHLSNGLGLDYIRLARKNQQAVWAETCPQYLLLDDSLYENEDAVKYVMSPPLRPKAELEKLWLGLEDGSIDTVATDHCSFTYHDQKHKGVDDFTACPNGMPGVETRMPLLFSEGVSKGRISPEKFVEVTSFKPAKLFGLYPQKGCLLEGSDADIVLFDPELKVNISHDRLHDNTDYTPYESHAVTGWPVMTISRGEVVANHGEFLGKAGAGHFVHRKPFDKNNI
>NZ_CP041614.1|WP_144045650.1|1921982_1923194_+|YgeY-family-selenium-metabolism-linked-hydrolase
MTIPFNEVLVKAEEYKADMTKFLRDMIAIPSESCDEEKVVLRIKEEMEKVGFDKVEIDPMGNILGYIGHGPHLIAMDAHIDTVGVGNLDNWTFDPYIGMEDDEIIGGRGTSDQEGGMASMVYAGKIIKDLGLEGEYTLLVTGTVQEEDCDGLCWQYIIEQSKIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVPGVSCHGSAPERGDNAIFKMGHILGEVEALAQNLGDDDFLGKGTLTVSEIFYTSPSRCAVADSCAVSIDRRLTWGETWEGALEEIRALPAVQKAKGVVSMYEYDRPSYTGLVYPTECYFPTWKIDSEHVATKALESSFELLFDKKPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKAHLVTCAAMYAVIPMMYLDQLKK
>NZ_CP041614.1|WP_144045649.1|1920670_1921876_+|diaminopropionate-ammonia-lyase
MSTFSLNMEIADNRHYNGQLSSLFTAAEAKKALAFHSGIEGYQSTPLQSLDCLAKEFGLGKILVKDEAHRFDLNAFKMLGGAYAIARLLCDEFKLDINAFDFDKLKNDITEKMTFATATDGNHGRGVAWAANKLGQNAVVYMPKGAAVERVNSIKSLGAECIVTDMNYDDTVRLAIKTAAQNNWKVVQDTAWEGYQEIPTWIMQGYTTLALEAVEQMAEQNVKAPTHVFLQAGVGALAGGVLGYLASIYGPDKLHSVVIEPETADCIYRSGISANGEMVNVDGSLDTIMVGLACGEPNPIGWPVLRDCATQFVSCDDAVAALGMRVFGNPLGTDPRVVSGESGAVGLGLLAAIHFHKDKADLMQKMGLNKDSVVLLINTEGDTDPLNYRDIVWGGKYPTMA
>NZ_CP041614.1|WP_144048893.1|1919403_1920591_+|knotted-carbamoyltransferase-YgeW
MKSINTLIKEINELESQLDQKDLLLTWEQTPAELERVLKTAKVLKTMRDENIATNVFNNGLGISLFRDNSTRTRFSYASAINMLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGIRDDMYLGAGNAYMREVGEALDEGVEKGVLPSRPALINLQCDIDHPTQSMADLAWLEEHFGDLKELKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPEVVEQAKKNAKASGGSFTQVDTMAEAFEGADIVYPKSWAPYQVMGKRTELLRANDQEGLKALEQACLAQNAKHKDWHCTEEMMTKTKDGEALYMHCLPADISGVSCKEGEVEESVFEKYRIATYKEASWKPYIIASMILNRKFSEPGKILKELLTDAKKRVK
>NZ_CP041614.1|WP_144048892.1|1917274_1918987_-|AAA-family-ATPase
MKLQPTILEFTQKLSAVLQLDAEVVDANLVRIAGTGPYNKFIGKKLNTSSRIFRYIIETKNNKVVVKTRTDPICEGCTTRDSCEETAFLGVPIILNESCIGVISLVAFNQKSRELIKNNTQLFLDYIQHISQIFVIKVSESKKSSSGLDDVFSSLINNMDQGVLVLDGSNRVLHGNAPALANLNISQTELTSIEINIQPLLVHDNKLKGPEQHIITLGKRQELVVGQFHVIKSQQLFLMSFYQPHNAISQDDTSMNLFKDIIGESSQMLQLKTLISRVARSPSSILIDGESGTGKEVFAKAIHAHSDRNKQSFIAINCAAIPEQLLESELFGYVKGAFTGALTKGRVGLIQAANNGTLFLDEIGDMSMTLQSKLLRVLEEREVMPIGSNSPVPVNIRIISATNRNFKEMIAQNDFREDLYYRLNVIPMHLPALRERKGDIEHLVYHFLERHSHAIGACYPGITETVINSLNAYHWPGNIRELSNLIEYLVNIVPVGDQIDVDLLPPYFDNQVEVSETKTRVTDDYLNLEEIEKIKIEECISRLGNRKLVAKELGIGVATLYRKIKKYQLS
>NZ_CP041614.1|WP_144045658.1|1935189_1938300_+|putative-selenate-reductase-subunit-YgfK
MGDIMRPVPFDELLHRMFSEFKQSQSIFGIPAKQFYRKNDANKLAVWGENCQTPVGPAAGPHTQLAQNIICSWLAGGRFMELKTVQKLDTLEIAKPCIDAEDECFNTEWSSEFTLPKAYDEYVKAWVALYLLEEVFQPLVDGEEKSFVFNMSVGYDLDGIKTAPMQAFIDNMIDSSKHPLFVQHIEQLKCFVAAGDFEQKYGVKVAANRIDGLLNAISPQISKGVTLSTMHGCPPAEIEAICQYMLEEKKLNTFVKLNPTLLGFKRVRSILDNAGFTHVVLSEESFSHDLQIDGAKAMLHRLVDLGKTLNIGFGVKLTNTLGTINKKGRLPDKEMYMSGRALFPLSINVALELSNEFDGELPISYSGGASKFNIKEIFEAGIRPITMATDLLKPGGYMRLTDCVNELANSSEWGMTKVNIPKLAELAKKSLTVDYTQKEWRGPEDITVNKALPLTDCSVAPCVTACPISQDIPEYLRLMGEKKYAEALEVIYSRNALPAITGQICDHQCQYNCTRRDYEGALNIREMKKIALEKGWDEYKAKWHQPSLTDKAPAAVLGAGPAGLSAAYFLARAGHPVTIFEKEANAGGVVKNIIPHFRIPAAAIEHDIEFVTNHGVNIEYGCKTDLTVDALRASGFKYICVGIGADKGNPMSLEGGNTHVFKSLEFLAQYNNGFFDSRDNKLGKHVAVVGAGNTAMDSARAALKVDGVEQVTVLYRRTVAEMPAYKDEYDEALAAGVQFMFLTNPESLSQDGKLVARVMELGEKDAKGRRRPVATDRTIELNVDALITAVGEQSNCDVLSKIGIPMGQDGWPIVSADTGETGLENVYLIGDANTGPSSIVSAISGGRKAASSILAKESVTECQYSVISDLDVEELYQRKAEIQVKLVNSDDQDAFIEQEAKRCLECSYVCSKCVDVCPNRANISLAVPGFKDKFQVLHIDAYCNECGNCAQFCPWNGRPYHDKLTIFNSLADMNASHNSGFLVEDERLTVRANEEIYTCELNNGKYFTLPDSLSDISRIIKFVVTEHDYLLGQLGE
>NZ_CP041614.1|WP_144045659.1|1938311_1939640_+|putative-aminohydrolase-SsnA
MILLQNVTAVQFEPCFVKEGVDILIDGTTIKEVGSNLRSEYPQAEVTDMKGKLVMPGIVCSHNHFYSGLARGVMADIKPSPDFISILKNLWWRLDLALDEEAVYYSGLICSLEAIKNGCSSVIDHHASPNYIAGSLKTLRSGFIKAGLRGMTCYETTDRNAGMKEMQAGVEENIAFAQLIDAAKKKGDEPYLVEAHIGAHAPFTVTNEGLSMMAEAVKVTGRGIHVHVAEDRYDVAHSHHHYGQDIVERLDSFGLINDKTLLAHGLFLSDRDIEILNARGGFLAHNARSNMNNNVGYNHQLAKFDNVVLGTDGIGADMFEELKFSFFKHRDSGGPLWPDSFLRNLWLGNDILAKNFGAKFGRLEAGNKADLTILDYMSPTPLLADNLPGHIAFGINAGNVNSVMVEGRFVYQDRQFPFDVAPIYAEARKVAQRIWTNMDKLS
>NZ_CP041614.1|WP_144045660.1|1942008_1942491_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MKICFKLNGQAVKVDVDPLQPLLHTLRERLGMTSAKQGCGEGECGSCSIIMDNQLVNTCLIPTIQAKGTALVTLEGLRDTPKGLCVIDALLEAKGVQCGFCSPAMVLALYHLLDNRVCASITPTDKQIREALAGNLCRCTGYAMIVEAGKIAARKGEGLW
>NZ_CP041614.1|WP_144045661.1|1942484_1943336_+|dehydrogenase
MVNIYRPTKLEQALELNAIYCATLFAGGTDLMVQGMAHYGDSDNAVVFLDDIAEIKGIELDNKTSEPRLVIGAGVTLYELIAHESVPFMIKDAARRIAAPALRNRATLVGNICNASPAADMLPALYLLDARIELGSPGGKRELAIEEFISGPGQTQRLADEIVTKVSLTLPMFDDYLYHKVGTRKANALTKLSILAGVRIESGIIQDWRLTFGAIGPTVVRNVEFEQGLIGQSADVLQQAETIDKIVDFYSQKIAPIDDHRSTAEYRRCAALNLLRRWLENIG
>NZ_CP041614.1|WP_144045662.1|1943430_1944363_+|aspartate-carbamoyltransferase
MSNPLYNKHIISISDLSRSELELIVSTANKLKKKPNPELLKNSVIASCFFEASTRTRLSFETAVHRLGGSIIGFPDSGNTSLGKKGETLADSVKVISSYCDAFFMRHNQEGAARLASEFSSVPVINGGDGSNQHPTQTLLDLFSIYETQGTLDKLQVAFVGDLKYGRTVHSLTQALSLFDCEFHFIAPSALSMPDYIIDELNAKGCKFTLHDTLDGVVDNLDILYMTRVQKERFDETEYQHLKSSFILSAKMLEGVKDNLKVLHPLPRVDEITTDVDYTPYAYYFQQAENGVYARQALLALVLTNEYGDE
>NZ_CP041614.1|WP_144045663.1|1944362_1944821_+|aspartate-carbamoyltransferase-regulatory-subunit
MKKHLKVEAIENGTVIDHIAPGQGIKILKFFELSKGQQRLTIGFNLPTSSGDFKDLIKIEHTVFDQNQANQLALFAPEATINVIENFDVVDKFKVAIPERISGVLTCPNSNCISHNEPVDSRFNIKQERIGVKLKCHYCEKSFISGVFREFH
>NZ_CP041614.1|WP_144045664.1|1945192_1945987_+|molybdopterin-dependent-oxidoreductase-FAD-binding-subunit
MIEHFLKPSSADQALNLMKEHAANATWFAGGSKLNARPSLTKKTVAISLNNLALETIELRGNSLYIDAMCRVQSVLENELTPYGLKQAAKFIYSKHLRNQATIGGEIAAFQEEALLLPVLIALKARIVTADVGEMGIEDYLESASRGLILQVVIPDVNLVCLAYNMTRSAAGLSIINVAVSLDQAGDSVIAIDGVSPRRAGYSIPVRLRDVEAQKLTDEQLEKAVANSVFPEADIRGSVDYKQYISGILVTDLLAECQRLVKEA
>NZ_CP041614.1|WP_144045665.1|1945989_1948860_+|molybdopterin-dependent-oxidoreductase-Mo/Fe-S-binding-subunit
MSINLTINDRQQELACRLGDNVQTLLNKAGFRSVRNSDDGFGFAGSDVILVDGRLLNASLLIAAQLEGAEIYTAESLGKWNQLNHVQQAMIDVGVVQSGYNDPAMALILTELLKDNPNPNRDEIDDALTGIFSRDAGYQQYYEVIELAVNRLKDPEHDKQYAPEFRDDLTFIGKNTPKLDSAKMVQAKPCYVEDRIPKDACVIKMLRSPHAHAWLTHLDVTKAEALEGVVTVITYKNCPDIPYTPGGQSAPEPSPLDRRMFCQKLRHVGDRVAAVVAESVEIAERALELIEVKYDVLKPVISIDEARAADAPIIHNGPIEYVVGAPDDLAEQNENADIRDGKVILNFPIGCFPRKNIAASIRGHIGDINKGFSEADHVIERTYESKQVQQLPTETHICYSYMDGDRLVMHDSTQVPWHVRRQVAKIIGVKQNKVHIVKERVGGGFGSKQDILLQDVCGWATWITGRGVYFHYTREEEFIANSTRHVAKVHVKIGAKKDGTLTAIDMDFLANTGPYGNHALTVPCNGPALSLPLYPCDNVDFRVTTYYSNICPTGAYQGYGAPKGNFALTMAMAEMAEVLGIDHLDMVEINRVREGQELKILAAIGEGKMPATAPRALSCALEPILKQGRELINWDGDKQADGDWRIGRGVAIIQQKSGIPDIDQANCSIKMASDGTFIVHSGGADIGTGLDTVVAKLTAEVLRCPIDEITIHSGDTDHAPFDKGAYASSGTCFSGNAAKIAAEAMRTKILTCGAEMLDEAVEDVVLAAPGVVKGKQGEVSYFDIARRAESGTGWGQLLANGCYTTSLFAFPYGANFTEVAVNVRTGEIKLEKFHALLDCGTPINPNLALGQIYGASLRAIGHSLTEELIYDENGIPLTRDLKSYGAPMIGDIPKEFKAVLVPSDDKVGPYGAKSISEIGVNGAAPAIASAIHDACGVWIRDWHFTPEKVLEGLNKL
>NZ_CP041614.1|WP_144045666.1|1949020_1950433_+|purine-permease
MKLLYKIEDKPPMGVSIVLALQHMLAAMGAIVAVPLVVGSAIGMATDEMVILVNAALMVSGLVTIIQCKGAGPVGIRLPVVMGTSFTFVAISISIGLESGVSAIFGSALIGSLVMIIGSRFMPQIRKLFPPVVSGTVVLLIGLTILPVAVDWFAGGFVGQEGYGDYNNLLLGLLVLVVVIVLSQLGKGIVSAAAIVIGMFVGYLVAIILGIVDFSPVGSAPVFALPSLLPFGLSFTISGIIGMSIAYLVTIMESTGDFLALSDATNTKLTGSKLSKGILCDGLGSALASTLGTTPFSSFSQNVGIVSITGVASRHVVALTGLIMVFAGLFPKIGALVVTIPSPVLGGAGLVMFAMIISAGIGILARINFTKRNMMIIAVGVAFGMAVTFRPEILHSFPDSIRVIFSSGITAGSLVALLLNLVLRVSRSDEVQCTAEKRESLKEQIEESEADNLSEADNLSELDEKTNYNN
>NZ_CP041614.1|WP_144045667.1|1950498_1951815_+|guanine-deaminase
MGCNHTIKVIRASFLDILSVVDDPADIEKNLRFIEDGLMFVANGRIEWIGTWEEGKDKIPADVRVRSYPGKIVMPGFIDTHIHYPQSEMVGAYGEQLLEWLDNYVFPTEARYKDKDYAKEMSEFFVKQLLRNGTTTAMVFGTVHPESVNSLFEVAENINMRMIAGKVMMDRNAPDYLLDTPEISYNQSKELIEKWHKRGRLLYAITPRFAPTSSPEQLDVAGRLKQEFPDTYVHTHLCENKDEIKWVKELFPERASYLDVYHHHGLTGPKSIFAHSIHLEDCEWDCLHETDSAVSFCPTSNLYLGSGLFKLQEAWKRKVKVGVGTDIGAGTTFSMMQTLNEAYKVMQLQDYRLSAFEAFYLATLGGAKSLSLDHLIGNFEIGKEADFVVIDPCATPLQQLRYDNSKSLADELFVLITLSDDRSIYRTYVDGQLVYARN

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Crispr_ID: NZ_CP041614_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_8

2224011-2224114

Orphan

Consensus_repeat	Method
CTGTAAGTGAGCCTGCGAACGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_8

>merge|NZ_CP041614|8|2224011-2224114|CRISPRCasFinder
CTGTAAGTGAGCCTGCGAACGTTCATCTTGGCTTGAAGTTTTTCCGTAAGCGAAGCGTTGATCTTAGCCCTAAGCTTTTACCGTAAGTGAGCCTGCGAACGTTC

>NZ_CP041614|8|8|2224011-2224114|CRISPRCasFinder
CTGTAAGTGAGCCTGCGAACGTTC	ATCTTGGCTTGAAGTTTTTCCGTAAGCGAAGCGTTGATCTTAGCCCTAAGCTTTTA
CCGTAAGTGAGCCTGCGAACGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144045874.1\|2224172_2225129_+\|LPS-O-antigen-length-regulator	unknown	unknown	gnl\|CDD\|367147
NZ_CP041614.1\|WP_144045882.1\|2236625_2237645_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|379238
NZ_CP041614.1\|WP_144045881.1\|2235600_2236626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366335
NZ_CP041614.1\|WP_144045883.1\|2237634_2239101_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144045877.1\|2226659_2228072_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NZ_CP041614.1\|WP_144045869.1\|2212685_2213789_+\|response-regulator	unknown	unknown	gnl\|CDD\|381107
NZ_CP041614.1\|WP_144045870.1\|2214170_2214518_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NZ_CP041614.1\|WP_144045880.1\|2234170_2235604_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|225153
NZ_CP041614.1\|WP_144045872.1\|2216943_2218476_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP041614.1\|WP_144048912.1\|2219055_2219598_+\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|131010
NZ_CP041614.1\|WP_144045871.1\|2214887_2216366_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP041614.1\|WP_144045878.1\|2231974_2232901_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187550
NZ_CP041614.1\|WP_144045873.1\|2220735_2223471_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|224512
NZ_CP041614.1\|WP_144045879.1\|2232893_2234066_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99740
NZ_CP041614.1\|WP_144045868.1\|2211791_2212619_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NZ_CP041614.1\|WP_144045876.1\|2226179_2226629_+\|GDP-mannose-mannosyl-hydrolase	unknown	unknown	gnl\|CDD\|239522
NZ_CP041614.1\|WP_144045875.1\|2225148_2226138_+\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	unknown	unknown	gnl\|CDD\|274398
NZ_CP041614.1\|WP_144045866.1\|2209003_2209348_-\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|225166
NZ_CP041614.1\|WP_144045865.1\|2208306_2208711_+\|DUF2802-domain-containing-protein	unknown	unknown	gnl\|CDD\|378523
NZ_CP041614.1\|WP_144045867.1\|2209404_2211555_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144045874.1\|2224172_2225129_+\|LPS-O-antigen-length-regulator	gnl\|CDD\|367147	pfam02706, Wzz, Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.	1.03925e-13
NZ_CP041614.1\|WP_144045882.1\|2236625_2237645_+\|glycosyltransferase	gnl\|CDD\|379238	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1.	4.30091e-19
NZ_CP041614.1\|WP_144045881.1\|2235600_2236626_+\|hypothetical-protein	gnl\|CDD\|366335	pfam00852, Glyco_transf_10, Glycosyltransferase family 10 (fucosyltransferase) C-term. This is the C-terminal domain of a family of fucosyltransferases. This enzyme transfers fucose from GDP-Fucose to GlcNAc in an alpha1,3 linkage. This family is known as glycosyltransferase family 10. The C-terminal domain is the likely binding-region for ADP (manuscript in publication).	2.97363e-08
NZ_CP041614.1\|WP_144045877.1\|2226659_2228072_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP041614.1\|WP_144045869.1\|2212685_2213789_+\|response-regulator	gnl\|CDD\|381107	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains. Pseudomonas aeruginosa RssB is an orphan atypical response regulator containing a REC domain and a PP2C-type protein phosphatase output domain. Its function is still unknown. Escherichia RssB, which is not included in this subfamily, is a ClpX adaptor protein which alters ClpX specificity by mediating a specific interaction between ClpX and the substrates such as RpoS, an RNA polymerase sigma factor. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.7913e-49
NZ_CP041614.1\|WP_144045870.1\|2214170_2214518_+\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	2.20132e-41
NZ_CP041614.1\|WP_144045880.1\|2234170_2235604_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	1.92855e-07
NZ_CP041614.1\|WP_144045872.1\|2216943_2218476_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	5.40504e-87
NZ_CP041614.1\|WP_144048912.1\|2219055_2219598_+\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|131010	TIGR01955, Transcriptional_activator_rfaH., transcription elongation factor/antiterminator RfaH. This model represents the transcription elongation factor/antiterminator, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes. [Transcription, Transcription factors].	5.57021e-61
NZ_CP041614.1\|WP_144045871.1\|2214887_2216366_-\|MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.36441e-153
NZ_CP041614.1\|WP_144045878.1\|2231974_2232901_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.43341e-124
NZ_CP041614.1\|WP_144045873.1\|2220735_2223471_+\|sugar-transporter	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	1.66001e-25
NZ_CP041614.1\|WP_144045879.1\|2232893_2234066_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.24152e-108
NZ_CP041614.1\|WP_144045868.1\|2211791_2212619_+\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	3.31771e-90
NZ_CP041614.1\|WP_144045875.1\|2225148_2226138_+\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	7.38203e-99
NZ_CP041614.1\|WP_144045866.1\|2209003_2209348_-\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|225166	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].	1.13309e-25
NZ_CP041614.1\|WP_144045865.1\|2208306_2208711_+\|DUF2802-domain-containing-protein	gnl\|CDD\|378523	pfam10975, DUF2802, Protein of unknown function (DUF2802). This bacterial family of proteins has no known function.	1.10841e-21
NZ_CP041614.1\|WP_144045876.1\|2226179_2226629_+\|GDP-mannose-mannosyl-hydrolase	gnl\|CDD\|239522	cd03430, GDPMH, GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus closely related to the regulation of cell wall biosynthesis. Enzymes in this family are believed to regulate the concentration of GDP-mannose and GDP-glucose in the bacterial cell wall.	2.7792e-72

>NZ_CP041614.1|WP_144045873.1|2220735_2223471_+|sugar-transporter
MLHKTKKIIIAGISALVLLSTQAQAVMPSPQMIEQFKKLPASEQQRLAKQYGIDPSMISGGSSQQRQLENPQLVNERQLIDNRGGEGKKAKLDFDEDKAKAELKRFGYDLFQGEPTTFAPVSDVPVPSEYMVGPGDNIKVQLYGKDNKEYDLVINREGVIQFPELGPINVAGLNFEELKKQLTTRINHQMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQALFVSGGVNKIGSLRNIQLKRNGKLIGIMDLYDLLMRGDASGDERLRSGDVVFIPSVGGLVSVTGEVRRPAIYELKKHETIGDIISMAAGLKPGAYPRSSSVERFNSKGLKTVTNLDLTTDSGKATKARSGDVVRIKSASNRYENAITVVGAVVRPGKYQWYQGQKISDLVPSIWGDLQASADLDYGIIVREINDYGDVEIHQFAPGLAISDKIPSEDLLLKSRDKVIFFNFSDEAQNRYELNKLVKERVAKMTKLAGDSLIGNDIFSAGFSQLQKQGLEQRSQLGGVIIAKEAPEDDQAAAVIGEVNKMLINLFDDKDLIKLSSVMNRGELLYPVVMKLSSQGRAGKGVMVVAVNGKVRHPGIYPLAVNARVNDLIKAGGGLKEGAFTARAELTSTVTDNSGSSINHANVDLKSAIEGNVTANVLLKGRDILTVMTTPEWQENKTVEIRGEVKFPGVYNIRRGETLEDVLKRAGGFTEYAYLPSSVFVRESVRLQEQLEIKKLADQLRRDIATRGVSKDGNVVNYADAQMMLTDLENIKAVGRLVVDLSAISIGIEQADLQLEDSDVLYIPSTKQTIAVMGEVQHAATHRFKQGLTLDQYLAMSGGVRERADDDRTYVIKANGSVMMPSNSMWFSSADDLQPGDTIIVPLDTEYKDSLTLWTQVTSIIYNTAVAFATVANL
>NZ_CP041614.1|WP_144048912.1|2219055_2219598_+|transcription/translation-regulatory-transformer-protein-RfaH
MKAWYLLYCKPRGEARAVHNLTLQEIETYLPTIGEEKKVKGQVTVKRIPLFPGYLFIYFDPQITSVARIHSTRGVGRIVGCKELMTTVDDSIIHSIKMREHKLLSELLPEYKAEGAESDGLHDSDIEFTQGEKIRFTEGPFAELEGIFEEKNGDKRCHVLFEIMGQQKRVSVPKKSIKPI
>NZ_CP041614.1|WP_144045872.1|2216943_2218476_-|MBL-fold-metallo-hydrolase
MSNFQNVDIIHHGAVDGVTGSCHQLNINSESAVLIDCGLFQGAETAGKANANTLEVNFDIDNLVALLVTHCHIDHVGRIPYLLAAGFNQPIYATTATAALLPIVIADALKVGVTKNKRLIKLYLNKLQQLIIPIEYNLWFPLPVKPIALNSSDEIYSSFNTAKAKFKPAGHILGSAYIEIELSDLNINALSDEDNANKLASIAINAAVDSRVNKHRVVFSGDLGATYTPLLASPKSPYRADTLIIESTYGDKNHESRQKRTHCLKQVIEKAVSDNGVVLIPAFSIGRTQELLYELEQIIHQKRTHPLWSQMEIIVDSPLAAKFTEQYIQFKRLWDNEAKKKLNLNRHPLDFEQLYTVDSHEEHLSTINYLANRNKPAIVIAASGMCSGGRIMNYLEKFLPKSTADVIFVGYQAKGTLGREIQTYGPRGGYVYINGDKIDIKAGIHTISGYSAHADQHNLVNFVKRMHHKPRHIRIVHGDDNAKHALAAKYRQLLPRAEIVIGRAEMMDKT
>NZ_CP041614.1|WP_144045871.1|2214887_2216366_-|MFS-transporter
MSVTKPQGTMLGHPKGLFLLFTTELWERFSYYAMRAILVLYLVDSVQSQGGHGLGWTSADAISLYGTFTGLVYLTPLIGGWLADNYLGQRRSIMIGGALMAAGQFILGTPHAWVPGMEIQAFYLGLGVLILGNGLFKPNISTMVGDLYEEGDHRRDGAFTIFYMGINVGAFLSGIIVGSVVSAYDGNFQMGFLCAGIGMVFSLIIQFFFAQRLLGDIGRYPAAKLERDKAKAAGKTDVEKVPLTSVERDRIKVIMVMGLFTIIFWAGFEQAGGLMNLFTNDFTDRMIGGWEVPTTWFQSLNAMFIVIFAPVIASIWIRLGKNEPNSPVKFALGLVLLGIGFLFMIGAVLEMGGNPDGKSSMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGAWFLFVAAANKIGGFVGSFIGHGGPKEEQLANAMAIFAGIAITSALSGIVLYFMADKLVSWMHGAEGDHVHTEEEALEEEMAVTADHEGIKH
>NZ_CP041614.1|WP_144045870.1|2214170_2214518_+|four-helix-bundle-protein
MRFEKLELWKKACNLSCSIYEITRHSNDYGFRDQITRAGLSIPSNIAEGVERPSAKEQIRFLYIARSSAAEVITQLFIGMKIGYINNEIGHCLIKDIKTIVTMITALIKSKQMKG
>NZ_CP041614.1|WP_144045869.1|2212685_2213789_+|response-regulator
MALEELVILLVEDDPVFRRIVATFLNSRGAKVIEANDGAQGLDKFKQYAFDIVLADLSMPIMGGLDMLKKMSELKPDTPSIVISGNQVMADVVEALRLGASDYLVKPVSDLFLIENAIKQCLESNVSKEVHLEDLEELSYQELQDNLVLLEQNEQAAKSVQQQLFPPSQINYLTAKVDYSLYKSDEVSAYFIDTVNVGDNHLVMYMAHFHPQDNRAAFASVLLKSFVNQKLKLYRNGTTQAIIEPYNMLSYLNERMTKSGLDICIDIVYVVIELTQYRASIAQAGNGLRCYIRNQQGLTPLALPDSLQLGILDWGHPSAQFRTLMPGERLCIVSCKPEHKKMLLDNQFHGLAYDTEIPTGGYMQVSF
>NZ_CP041614.1|WP_144045868.1|2211791_2212619_+|VacJ-family-lipoprotein
MKLKWIASVVVALGLNHGIHGLVFATESATEQGNNSQPEVLAVNPSSQDQVVVLYNDDRDPLEGFNRAMWDFNYLFMDRYFYRPVAHGYKDYVPRPVKTGINNFVTNFEEPSSMVNNTLQGKWGWAANAGGRFTINTTLGLLGVIDVADMMGLPRKQDEFNEVLGYYGVPNGPYFMAPFLGPYVTRELASDWVDDLYFPLSELTMWQSLVKWGLKNLHRRAAAIDQERLVDNALDPYTFVKEAYFQHMDYKVYDGDVPVDQDEDDLLDEYMQELD
>NZ_CP041614.1|WP_144045867.1|2209404_2211555_-|hypothetical-protein
MSDPLSSVPKAGATLSKTQVENRQAQTTQGSSLPRAHNQEVLDPKVLKQDALTQDVLNREALRISSTSQANVKLTPTTAEIQSLALKPATIQFSPKTDHLSVDGSRYLVSFSSIKHRQVAAVATSYQLVASQQVLDLPSAVTGDKGRLGDTINTATTSGSSVIDSRLTANSQHGLYQNQIKNILLALGKSVSIALPIALKQRLNQQGLDIQQMKVLSSRAQGYPLPMTQLSNNKLIFSNGTSVPISNMTVSEIANNAQFNQAKPNPLSVIPSIHYQNKHWLLTLSPVIDELQIKLTPETTKNPTTPIKGEQIVLAKPEIGNIYTQLFKMLSQASMDNSQGPGKSALPPELQTELKSNHSQTLAVANSKKQPSVQASDETTNKQLSKEAGKVQSTELNKVLSKETHKAIDLTSTTSTSSVKTTKTEPDTIQPSKQNMMQVSIQKAYGKFSGKQAVVEATTKPANSLLANLTKLLPQLRPLSLNALALPSTIKDELSAIASLHSQVNPLSISASPLTHINSIGLLFQLLLGVKASHASGNTDKLSGPAQKYLQKLQAQLGGSTSLLNLLDKAGATEALGKLFSNLSLYSQASNDTGTQVNWYFTLPYSLNQHQEALEGHLSEDKDDDDNPKANSWRLQLKFNLTKGPLLIQAQVTDNRINMTFNGSNDTLLKKIDALLPPLMNKLSDIGFTPDRIETKLTKVPASLLPGEHFLVKIKA
>NZ_CP041614.1|WP_144045866.1|2209003_2209348_-|flagellar-biosynthesis-protein-FlhB
MNDDKEEAKEDGAAQAKTEREAVALSYDGQQAPVITATGKGVVADEIIALAKEAGVHIHKDAHLSDFLQRLELGEEIPKQLYLLIAELIAFAYTLDGKFPEQWNNMHQKILEEV
>NZ_CP041614.1|WP_144045865.1|2208306_2208711_+|DUF2802-domain-containing-protein
MISDGILIAALVYVIACLGLVLYQQKQTSKLRVKVEALTLLIKESDRQRETVKRELQELRSGTIGVGRRMLELEKRTSKQDARLDEVNQQDPQARLYSRAMKMVDLGASIDELIQECELPKAEAELIIRLHGKG
>NZ_CP041614.1|WP_144045874.1|2224172_2225129_+|LPS-O-antigen-length-regulator
MSTDINKYNDSQFAQTTNDDEIDLRELFAVIWQGKWLIIAITAVFAIGAVIYAINLPNIYKSEALLAPASEEQSGGLSALAGRFGGLASMAGINLGGGGGVDKTKMAIEVMKSRQFTSQFIQRHQILPDLMAIDKWNMSDNSIIYDDKLYNLTTNTWVREVNAPFKPEPSMQEAYKEFNKVISVNSAKDTGMVTVSVEHLSPVIAQQWVTWLIEDINRVMKERDVDEANRSSQFLNKQIALTNVADIRSILYKLIEEQAKTIMFAEVRDEYVFKTIDPALISEEKFKPKRAFISIIGTMLGVMLALIFVFIRYFARKK
>NZ_CP041614.1|WP_144045875.1|2225148_2226138_+|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase
MNFRVNKIEETDNYQHTEKLIKRFKSKTQVLNQKQIYVYCPVDREREIGEIIDDYSFDIVVNDYSITDFSCKVICHFESSHLSKEKRQFLVQATELGAWVEPLVSYLDARLGYTEVRLLHSGYFLHQKAFSILSTKRTQLAKRIIDIIAITMLSILAIPICILAAIAIKVESKGPILYRQRRTGQYNDEFYVIKFRSMCSDAEKFGAQWASKNDTRVTRVGEFIRKTRIDELPQIINILKGEMSIVGPRPEREVFISELEKEIPYYRFRHAVKPGVTGLAQVSYPYGASVEDAVWKHKYDIFYIKHHSSWLDIKILFKTVKVVLFGMGR
>NZ_CP041614.1|WP_144045876.1|2226179_2226629_+|GDP-mannose-mannosyl-hydrolase
MYLDEDVFSLIVANTPLVSIDLIVLNEKKQILLGKRINKPAQNHWFVPGGRILKDETLAQAFKRLTRIELGNEIDITQAVLLGPYEHFYPDNFYNEEYSTHYIALGYQLSLELSLLQLPKRQHAHYQWFDGNELLSRDDVHLHTKWYFA
>NZ_CP041614.1|WP_144045877.1|2226659_2228072_+|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MILPVIMAGGTGSRLWPLSRELYPKQFLTVSGNQSLLQQTIERLSGIEHQEPLLICNEEHRFIAAEQLRIAGFGHNGIILEPVGRNTAPAIALAAIQALKNSDLGEDPILLVLAADHLIQDIAAFSSSVAKALPFAENDQLVTFGIVPTSAEIGYGYIKAGKSDNDAFNVEKFVEKPNLETAEAYISSGDYYWNSGMFMFKASRYLEELRNHCPEILNACERSMQVTNLDMDFIRVDKTEFEKCPDDSIDYAVMEKSKGVVVVPMNAGWSDVGSWSTLWEVSQKDRNNNVCKGDVISINSSQCYLHSEHKLIATVGIDNIVVVETKDAILVAHKDKVQDVKKIVTHLKKSGRTEHKIHREVYRPWGKYDSIDFGQRDQVKRITVKPGEKLSIQKHHHRSEHWIVVSGTASVLNGDKTILLTENESTYIPLGTIHALENPGKIPLEMIEVQTGSYLGEDDIVRYEDRYGRI
>NZ_CP041614.1|WP_144045878.1|2231974_2232901_+|NAD-dependent-epimerase/dehydratase-family-protein
MKILLTGANGMVGRNILAVSTMHNHEFLSPSSSELDLLDGNAVYQYVEKHQPDMIIHAAGVVGGIQANMARPVKFLVDNMQMGINILTAANDIGVVNFLNLSSSCMYPRDAINPLSEELILKGELEPTNEGYALAKITSTRLCEYISKETPSRLYKTIIPCNLYGRFDKFDPNHSHMIPAVIRKIDEAKNNQVSEIDIWGDGEARREFMYAEDLAEFIFYALDNFAIMPQNLNVGLGTDYTINEYYQAVADVVGYTGEFTHDLSKPVGMRQKLIDDAKLKEFGWVYKTSLEVGIQKTYEFYLSEYCND
>NZ_CP041614.1|WP_144045879.1|2232893_2234066_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MTNYALASSTWNDNEYSAIQRVIESDMFTMGKEVAQYEKDFADFFGTKYALMVSSGSTANLLMIASLFFTKNESLKLKRGDEIIVPAVSWSTTYFPLQQYGLKVKFVDIDRKTLNMDLDKLEAAITEDTRAILSVNLLGNPNDYLRMNEIIAGRDIFILEDNCESMGAMIDGKQAGTFGLMGTYSSFFSHHIATMEGGCVVTDDEELYHILLCIRAHGWTRNLPKFNMVSGEKSDDPFEESFKFMLPGYNARPLEMSGALGIEQLKKLPDFIKTRRKNAQLFQSLFSNHPFIDIQQETGNSSWFGFSLILKENAPYNRAHFVKLLSEHGIECRPIVTGNFLKNTEVLKYFDYEVAGTLEASEYLDKNGLFVGNHQNDIEKEIKLLSTILS
>NZ_CP041614.1|WP_144045880.1|2234170_2235604_+|oligosaccharide-flippase-family-protein
MSIINKNKDVVILAGGKILQVLLALISIKLLTSLLSEEEVGQYYLLLTILTLFNFAFLNPVGQYFGRHVIGWQTDNKLSVATNTLLSVRLLAILVSISVSYFIYSILGYDQYYTLGEFLTFVSISLLSGTYLVLLNNLNTLGMRLLFIKYLISSLFLGLILSLIITQYVTATGIGWLYGIALSQCVFIYPVYVKFVKVGERTKLAGKLNRSSCKKIIAFVIPITITLFLQWGQNSSYRIIIENKYSIETLAYVAVGFSVSSAIFTAVSSLATQYFNPIYFRNITNASKEQRTAAWNELAGVIFPVYICLALFVICLSPYLINVLVSDRFHDAYIYVAIGAIIELLRVSSNIVYLVSQSEVKTTTTIFPYIIGFVCSVTVLYFVDFSQYIWMIAVVLSVSYSIIFILLFVNMRRLLPISIKMKGVCKSVFLSIPFFLVPLIECKPSIISSLLIIVFFGMYLILCIYKLIRMHDGVIIK
>NZ_CP041614.1|WP_144045881.1|2235600_2236626_+|hypothetical-protein
MKKICLVIPKYLQKNEVFNIESPLNRDGIFDKYIKLKSEFRKHNWNLSTDDINTIEVSDVVLYFDMPKTLPSKNKINCSYLILVESSLIRPDNYEFEKHSYFKRIFTWNDELVDNNRYFKLNFSHLFPPNIKVDVKNKDKLCILVSGNKKTPSHNINELYSKRVDAIKWFESNQADKFDLFGVGWGKRRFEGPILLRALNRVPFLCELFAILTGQVYPSYRGVIKNKKIVMENYKFSICYENVKDIPGYITEKIFDSFFAGCVPIYWGANNVSKHIPSNCFVDKRDFQSYEELFDFISNIDDEKYIDYMNNIQNFLNSEDGFKFTGQNFAEVVVCNVLKDF
>NZ_CP041614.1|WP_144045882.1|2236625_2237645_+|glycosyltransferase
MIKKILYVAFKYESGIKSNGLALNYKAWHDNFIDLGYEVDAIFYDDYSIDEIQKEIIIKAEKYKPDLIFFILQKDQVKVSTINHLHMKGFFTVNFFGDDQWRFESFTSVYAPYFSACITTDKFSVEKYISIGQPNIICSQWASLENKIEIDNNDYKYNVSFVGGCNRYRKWFVDTLRKRGITVDCFGNGWPNGRVTYAKIEEIFLSSKINLNISNSSSFDIRYLFSSFKAMLLGIKAVFISGKSSSQTKARNFEIPVQGGFQLTDYVPSLEDYFLIGKEISCYNSIDESEKLIHYFLNNEEEREVIKSSGIKKARNNHTFKHRIVDFMIKLEELKKNDC
>NZ_CP041614.1|WP_144045883.1|2237634_2239101_+|hypothetical-protein
MTVNKIDKLTLTNLVEGHFEADFNSVEHNIITLNSVDLLTHNRFDLAFKLLYLDGICFKSYFSKESYKEHIRAFSLGRYTEPGNDKKNNIESFYQSFHVTYEKIQRIGFDSTESLIPLSCNGSILDGAHRLASAIHLGKKVSCIESNADSKKYDYRFFFSRQVPIKMLDSAATKFVEVANNIYIACIWPSAIGHDDQLEKVIPNIVYRKNVPINLTGAHNLLSQIYSGEKWLGDVKNNYKGVKGKLSECFSNNDDVRFIAFQASCLQEVLEVKECIREIFKIGKHSVHITDTTNEAIELAHLVFNDNALHFLNYGKPNTYINTHIKLNEFIEFMDIHKLNKNEVALDTGMLLALYGIRPASDIDYLSLVEIHTEVSDNIESHDNSLIFHAQDKSNLLLDPEFYFYFKNVKFICFNQVYNMKLNRGEVKDINDIQVMKGMLENNIIKQFIGRVKQKVFYTKAKLFKILVLILKRVGLFDFVYNLYKALK

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Crispr_ID: NZ_CP041614_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_9

2297369-2297464

Orphan

Consensus_repeat	Method
GTACAGATCAACTCGAAATTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_9

>merge|NZ_CP041614|9|2297369-2297464|CRISPRCasFinder
GTACAGATCAACTCGAAATTGAAACCCAATAGCAATAATAGATCTTTTAGGACAATTCTTGGATATTGAAGCGGTACAGATCAACTCGAAATTTAA

>NZ_CP041614|9|9|2297369-2297464|CRISPRCasFinder
GTACAGATCAACTCGAAATTGAA	ACCCAATAGCAATAATAGATCTTTTAGGACAATTCTTGGATATTGAAGCG
GTACAGATCAACTCGAAATTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144045917.1\|2298741_2299227_-\|ferredoxin-type-protein-NapF	unknown	unknown	gnl\|CDD\|319886
NZ_CP041614.1\|WP_144045916.1\|2298187_2298607_-\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
NZ_CP041614.1\|WP_144045924.1\|2307139_2308027_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP041614.1\|WP_144045906.1\|2279467_2280511_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
NZ_CP041614.1\|WP_144045908.1\|2282710_2283052_-\|anti-sigma-factor-antagonist	unknown	unknown	gnl\|CDD\|132914
NZ_CP041614.1\|WP_144045918.1\|2299311_2300325_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|177883
NZ_CP041614.1\|WP_144045909.1\|2283541_2283931_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NZ_CP041614.1\|WP_144045920.1\|2302507_2302846_+\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP041614.1\|WP_144048914.1\|2305940_2306597_+\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_CP041614.1\|WP_144045914.1\|2296554_2297298_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|236702
NZ_CP041614.1\|WP_144045922.1\|2304858_2305845_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP041614.1\|WP_144045907.1\|2280500_2282081_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240532
NZ_CP041614.1\|WP_144045905.1\|2277142_2279266_-\|WecB/TagA/CpsF-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|376775
NZ_CP041614.1\|WP_144045911.1\|2290226_2291729_+\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP041614.1\|WP_144045919.1\|2301613_2302411_+\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020
NZ_CP041614.1\|WP_144045910.1\|2285673_2286552_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NZ_CP041614.1\|WP_144045913.1\|2295590_2296481_+\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP041614.1\|WP_144045921.1\|2303068_2304607_+\|transcriptional-regulator-TyrR	unknown	unknown	gnl\|CDD\|236769
NZ_CP041614.1\|WP_144045923.1\|2306689_2307031_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP041614.1\|WP_144045912.1\|2291788_2292544_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236429

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144045917.1\|2298741_2299227_-\|ferredoxin-type-protein-NapF	gnl\|CDD\|319886	cd10564, NapF_like, NapF, iron-sulfur subunit of periplasmic nitrate reductase. This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	1.91771e-63
NZ_CP041614.1\|WP_144045916.1\|2298187_2298607_-\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	2.60634e-20
NZ_CP041614.1\|WP_144045924.1\|2307139_2308027_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.37753e-52
NZ_CP041614.1\|WP_144045906.1\|2279467_2280511_-\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.75278e-38
NZ_CP041614.1\|WP_144045908.1\|2282710_2283052_-\|anti-sigma-factor-antagonist	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	3.68235e-24
NZ_CP041614.1\|WP_144045918.1\|2299311_2300325_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|177883	PLN02240, PLN02240, UDP-glucose 4-epimerase.	0
NZ_CP041614.1\|WP_144045909.1\|2283541_2283931_-\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	6.16271e-12
NZ_CP041614.1\|WP_144045920.1\|2302507_2302846_+\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	4.38386e-48
NZ_CP041614.1\|WP_144048914.1\|2305940_2306597_+\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	8.57669e-107
NZ_CP041614.1\|WP_144045914.1\|2296554_2297298_+\|YdcF-family-protein	gnl\|CDD\|236702	PRK10494, PRK10494, envelope biogenesis factor ElyC.	2.02014e-40
NZ_CP041614.1\|WP_144045922.1\|2304858_2305845_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.91177e-51
NZ_CP041614.1\|WP_144045907.1\|2280500_2282081_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	4.37861e-21
NZ_CP041614.1\|WP_144045905.1\|2277142_2279266_-\|WecB/TagA/CpsF-family-glycosyltransferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	9.18429e-86
NZ_CP041614.1\|WP_144045911.1\|2290226_2291729_+\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.58407e-178
NZ_CP041614.1\|WP_144045919.1\|2301613_2302411_+\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	6.31322e-146
NZ_CP041614.1\|WP_144045910.1\|2285673_2286552_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	5.26765e-60
NZ_CP041614.1\|WP_144045913.1\|2295590_2296481_+\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP041614.1\|WP_144045921.1\|2303068_2304607_+\|transcriptional-regulator-TyrR	gnl\|CDD\|236769	PRK10820, PRK10820, transcriptional regulator TyrR.	0
NZ_CP041614.1\|WP_144045923.1\|2306689_2307031_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	1.29326e-43
NZ_CP041614.1\|WP_144045912.1\|2291788_2292544_+\|PHP-domain-containing-protein	gnl\|CDD\|236429	PRK09248, PRK09248, putative hydrolase; Validated.	5.90771e-164

>NZ_CP041614.1|WP_144045914.1|2296554_2297298_+|YdcF-family-protein
MMFWLKKAISQLFMPIPLVVLLLLFCIVMLRNRKLVRFVLAVAIVILVFLSSSVGSNLLTASLENQYKVNNQAIGAGCLVMVLGSGHDDEIPGAAVHQLSATALARLTEGVRQYQLGKDCILIVSGWGGSASNTPHAKIMAESAMQLGIPKDRIITFPLAKDTIEEAQYLKWDVGTYPFRLVTSATHMPRSMAIFQSQGLRPEAAPTDFITRQGYWWQLDANNLLSSQRAIHEYVGRLWFKLKYESN
>NZ_CP041614.1|WP_144045913.1|2295590_2296481_+|fructokinase
MLRMGVDLGGTKIELVALNAQGKELFRKRLPTPREYEATLDTIVSLVEEAETRLGMTGSVGVGIPGVISPFSGLVKNANSTWINGKPLDIDLGLRLSREVRVANDANCFAVSEATDGAGAGKGVVFGVIIGTGCGGGIAINGRVHSGGNGICGEWGHNPLPWMSKEEFNSTSCFCGNHDCIETFISGTGFVRDYNQAGGNVTKGSEIMELVDAGDVRAVAAFERYLDRLARSLAHVINTLDPDVVVLGGGMSNIDAIYPKLPEILAKYVLGGECRTPVVQNLYGCSSGVRGAAWLW
>NZ_CP041614.1|WP_144045912.1|2291788_2292544_+|PHP-domain-containing-protein
MKYLVDTHAHTIASTHAYSTVHDYIAVAKEKGLRLFAITDHGPDMADAPHFWHFVNLRVLPRILDGVGILRGIEANIKNDAGEIDYFGDYLQELDIVLAGFHEPVFPPADKQAHTQAMINTIESGNVDIITHPGNPAYPIDIKAVAIAAARSHVALEINNSSFKMSRKGSEANCVAIAKAVRDAGGLLVMGSDSHVAFSLGEFSQALEIIDEAEFPAERILNRSPEALLTFLSKRGHKTLDDFAELYQERF
>NZ_CP041614.1|WP_144045911.1|2290226_2291729_+|response-regulator
MEVKHSFTVLLVEDSMSLGALYTEYLRSEGAKVTHVNHGEDALSELTTWQPDLLVLDIKLPDMSGMEILQKVQSQYPDITVIMITAHGTIDLAVESMKSGAFDFIIKPFDAKRLSITVRNALKQRQLVNLVANYEKSLPKANYMGFIGESLAMQTVYKTIDCVANSKASAFIIGESGTGKEVCAQAIHHAGNRRDKPFIALNCASIPKDLIESEIFGHTKGAFTGAVANRDGAATRAHGGTLFLDEVCEMELELQSKFLRFIQTGIFQRVGGTKEEKVDVRFVSATNRIPWDEVIAGRFREDLFYRLHVIPIELPALRVRGKDVLLLAHKFLKEYNAEEGKQFKSFSGDVKKILQTYHWPGNVRQLQNIIRQIVVLNSSDIIDESMLPTLFKSDSGSGQTQIKPVISIASANQASAIKNCESLAIDELARSNKLQAADSEIVKAETIIPLWLSEKQTIEAAIEQCDGNVPKAAAMLDISASTIYRKRQGWDELQDAVSEN
>NZ_CP041614.1|WP_144045910.1|2285673_2286552_+|PhnD/SsuA/transferrin-family-substrate-binding-protein
MKISQWLNTHLFLPIALFFCGVVTTQASDTKHTVNESSILTFGVVPQQAASMLARKWSPLLAALSQNANFQLHFATAPDIPTFEKRLAKGEYDIAYMNPYHFTVFNESPGYLPLVKEQGKKIKGIIVVQKISTAHSLLDLDGQLLAFPAPAAFAASVLPRANLKIKGINNQIKYVGSHDSVYLAVAQGLVAGGGGVKRTFKTMDKEVTKQLRVLWETPGYTPHAVAIHPRVPVGVREELMIKFTQFSSTQEGTVLLEGLGFKPFEAAKSSDWNDVRALGLGDFSKPLETNDK
>NZ_CP041614.1|WP_144045909.1|2283541_2283931_-|ATP-binding-protein
MNSIQLNLSQKIWSSKLLCAELEQFLQQNSVRTQQRFKVITCILEALSNVLEHTDSRLEQIVVILHCDQEIITIDLLDNSPYTPIDDQVDCPSPFSLSGRGLWIIQSWMDQMRFQASVAGTHLRLSLLR
>NZ_CP041614.1|WP_144045908.1|2282710_2283052_-|anti-sigma-factor-antagonist
MKFSPLALENACLVTLPKEMIMAQTPTLRAAISRQIETGSTKLVMDLHQVEYIDSSGLSILISAHKLTQKHSGEVVLLAPSAGVRALIELTRLHHVFTIFEDRDAAIEHICTQ
>NZ_CP041614.1|WP_144045907.1|2280500_2282081_-|oligosaccharide-flippase-family-protein
MPVLDNSQRETRKGLTKGLFSLGSAQVLGRSIRFASSIILARLLTPEVFGEVAIILASFELISAPTRRITSVPLLKMDDKTFHSALPIANKINWFVAIIAFVAMSLLSWPLAFLHQDSTLIPPMILMATSYLLLPLGMLHATSNLKTNEIPVVGQAIMWQTIADGVLTASLALLGLGIWAIIIPKVLVILIWVGIHRNHTSLVYGSDSQCPPAEHFYYQNHAINSRSEIETTSVSHQVASLAKMKDDTGLADLQNLAISIKLIANLRDAEEIKKITHKLTERAPSTNDMLHMGAHIGLYDLSIALRNNIDYLLVGYFLGLEALGVYFFAVTASLGICTAMGQGSSSKVKPDPHTNPPSDKYSSSQSEIRNRYWHSLSQRLKIAVPIIVLQLVFAPLYLPFVYGEHWLDAGAFPVFILFSLCGLIRPYGEAASQLLTNINMQGINLKFNMGFTLLLVLTIGFFSQWGLKEVALGVFLTQLFTTVLVSYYAQSFILKSSVCKENNSSSNNKENKKMAKEFEQELPNDA
>NZ_CP041614.1|WP_144045906.1|2279467_2280511_-|glycosyltransferase
MTPRVSVIMPIYNVQHFVKSAINSVLMQSFTNFELILVNDGSTDKSVDICHSIHDHRIRIVNHTENKGLSAARNTGIRHAIGKYIAFLNADDMWHSDKLKMHVKHLSQSPKVGISFSRSSFMSHKGRLIHFYQMPQLTGITAAHLLCRNPVGNGSAAVIRREALNDIRFQALNHSENYTCYFDERFRQSEDIECWLRIMATTEWKMEGIPAPLTFYRLSQRGVSSNIMKQLASWEMMIDKAKQFAPKLLKRHEQDARAYQHRYLARQAIRNGQGKNAIKLINSALRISPSILLNETSRTCVTLTAAYLLWLLPSALYKIFENIGQYFMGHVQKVRISKDGVKSSLIS
>NZ_CP041614.1|WP_144045905.1|2277142_2279266_-|WecB/TagA/CpsF-family-glycosyltransferase
MLSETQIDAESTNGYAIRAVDISMAVLLILAAAPALVLKYLYRRCRYGAAIERINIYGTRGKQIDLYQFTGEGICCRWPYLINLLGGDLSLVGSEIEFNFKSHSAMTSDKDDQHIQTRESYIKPGILTFKQMHQRVGLNFESQDAEVCKAHKNPMIYLLAALRISLTQVFTPNKTSSAVAHIPLFGLKLDNLTMDELLENITQHALNHQLAKLNPLSMDTPIGMVQYAFVNADCLNISARDPNYLRCLRTSCHRVFADGSGIRLASQWKGYSPKDNLNGTDMFPRLCEQLSSKGLSVFLLGGEPGVAAKTAVNMQRTLPNLQIAGTHHGFLNTPKLNQAVIDKINDSGANVLLVAMGVPKQEVWLEAHQAKLNIAVGIGVGGLFDFYSGNIKRAPLWVRQLGMEWICRLAEEPVRMWRRYLLGNPLFLYRVLLEIFSPKQSKSVSIKRQASKPDSTCEVLRASHKKSDARFKPVETPLSSKLLNLTNNQVQNRQAINRCQRQLVLARLNSGLKRGVDLVGAITLLILLLPLLLTVSALIRLESKGPVFFSQRRAGKHNALFTMWKFRSMYQDAEYRLNRLQSANEVPGGVLFKMKKDPRITLIGKLIRKMSIDELPQLWNVIHGDMSLVGPRPALESEVKQYSLHDRRRLSVKPGITCIWQVSGRSDIPFEQQVELDIDYIYQQSFVTDIWLLIKTIPAVIWARGAY
>NZ_CP041614.1|WP_144045916.1|2298187_2298607_-|polymer-forming-cytoskeletal-protein
MFGNKKSSTGLTFVAQGTKLSGESHFAGEALIGGEVYGKVSSTGKITIEVDGYVDGEVNCEELKVSGNFKGKLKCKKLNITSTGTVEGEIACESMEIFEGGQFIGMRVREDIALLNTISLDEDSHTEPKADIQGELQAN
>NZ_CP041614.1|WP_144045917.1|2298741_2299227_-|ferredoxin-type-protein-NapF
MSNINQSRRRLFSRKKSNAIRPPWSKTDIEFTDICTRCDKCIKACETQIIIRGDGGFPEINFADDECTFCKKCAEVCPEPLFLDTEQAPWKLKAVVQETCLAYKGVWCQSCKDACDERAISFESAIGQAPKPMIDTGLCTGCGACAAPCPTNAIKLLSLNQ
>NZ_CP041614.1|WP_144045918.1|2299311_2300325_-|UDP-glucose-4-epimerase-GalE
MTILVTGGAGYIGSHTVVELLNAGQDVVIVDNLVNSSIEALHRVEEITGRTVTFYQGDVLNKAFLQKVFSDHKIQSVIHFAGFKAVGESVAQPLRYYENNVTGTLVLCEVMAANDVKNLVFSSSATVYGDPASLPITEDFPTGATNPYGQSKLMVEHILQDLHHSDPSWNIARLRYFNPVGAHSSGRIGEDPNDIPNNLMPFIAQVAVGKRDKLSVFGDDYDTHDGTGVRDYIHVVDLAVGHLRALDKLNTQSGLVTYNLGTGQGYSVIDMVKAFEKACGKPINYQVVPRRPGDIAACYANPDKAQSELNWKATHSLEDMASSSWHWQSSNPNGYGQ
>NZ_CP041614.1|WP_144045919.1|2301613_2302411_+|phenylalanine-4-monooxygenase
MSKNTEYVARLPDADGHIDYPQAEHEIWQALYSRQLGNLSEYACNEYQQGLIDLGLSDSNIPQLQDIDKVLLDTTGWKTAAVPALISFERFFELLANREFPVATFIRSKDEFDYLREPDIFHEVFGHCPLLTNASFAKFSHTYGKLGLSASKEDRVLLARLYWFTVEFGLIRNRDDSLSIYGGGILSSPGETLYAMGGEPQIKPFNLVDVLRTPYRIDIMQPVYYAVDGLSFLDEIVEMDIMGAVAEAKKLGMFAPLYEPKSKAS
>NZ_CP041614.1|WP_144045920.1|2302507_2302846_+|4a-hydroxytetrahydrobiopterin-dehydratase
MSKLSEMKCEACQADAPKVSDGELAELIRMIPDWGVEVRDGVMQLERVYKFKNFKLAMVFTNALAELAEAEFHHPGILTEWGKVTVTWWSHSIKGLHKNDFIMAAKTDQLVN
>NZ_CP041614.1|WP_144045921.1|2303068_2304607_+|transcriptional-regulator-TyrR
MRLEVCCLDRVGLAKDILMILEGYGINLIAIDASNQGFLYLQFAEVNFDVLSELLPLIRKVEGVHDVRTVSFMPSEQEHYALKTLLKTLPDSVFSLDVKGRVRIVNESALMTVGMAEHEIIDEPLNHWVQGFNFSRWLSEGLVLAQATRVNIGQNEYLAEMLPIYLPDENEKSILAGAVVSLKSPARVGKQFNALQSQTVGFENVLVTSDKMKEVLVQARRMAQLDAPLLITGETGTGKELMARACHDASMRREHPFIAINCAALPDSAAEEELFGFVSNGTVVKRGFFEEGKGGTVFLDEIAEMSKSAQVKLLRLLQDGTFRRLGGDNEVRADVRIICSTQKNLAELCQTGEFREDLFYRIHVLSFHMPSLRDRKVDVIPLTEMFLEHYSQQLSIPIRRISAQCREHLLNYAWPGNVRQLKNAIFRAVSMWDGSAELSVEHLKLPSYAEGFGYFDHQFEGSLDQAMKQFESSLLRRLYPAYPSTRQLAKKLGVSHTAIANKLREYKISKQK
>NZ_CP041614.1|WP_144045922.1|2304858_2305845_+|fumarylacetoacetate-hydrolase-family-protein
MKLASYNNGRRDGQLMLVSKDLSKTVAVPAIAHTMQQLIDAWELLQPQLQELYEALNDGLIDNAVDFDEAKCLSPLPRAFQWADGSAYVNHVELVRKARGAEMPETFWTNPLVYQGGSDCFIAPKADIPLASEEWGIDFESEIAVITDDVPMGVSADSAHKHIKLLMLVNDVSLRNLIPGELAKGFGFFQAKPSSSFSPVAVTPDELGARWEDSKVHLPLITHLNNELFGRPNAGVDMTFNFSQLVSHVAMTRPLGAGAIIGSGTISNYDRSAGSSCLAETRMLETIADGKPSTTFMKFGDRVRIEMLDDNEQTIFGSIDQQVVEYKG
>NZ_CP041614.1|WP_144048914.1|2305940_2306597_+|maleylacetoacetate-isomerase
MLKLYGYWRSSAAYRVRIALNFKGLDADLLSVHLVKDGGEQHKADYAKINPQELVPTLVDIDDSGNEFVLSQSMAILEYLEDCYPQSALLPTEAKSKAHVRALALSIACEIHPLNNLKVLQYLAGEIGIADEAKSVWYHHWIHEGFGALEQQLEKHAGRFCFGDSVSLVDLCLIPQVYNAHRFKVDLTCYPNILRVTENCNQLDAFIQAMPENQFDAS
>NZ_CP041614.1|WP_144045923.1|2306689_2307031_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MNSELQVTDIKIGDGKELVKGALITTQYEGFLQDGTKFDSSYDKGRAFQCVIGTGRVIKGWDIGLMGMKVGGKRKLEVPAHLAYGERQIGSMIPANSNLSFEIELLKVLTRDD
>NZ_CP041614.1|WP_144045924.1|2307139_2308027_-|LysR-family-transcriptional-regulator
MDIRQLKHLDALVKTASFTKAAQSLNMAQPALSQSIKRLESSLGVTLVNRASSAKGGSKQLSLTAEGKALHQHALLIIKQLKQAEAHIKSMANLTKGEVRIGVPGMLGSFYLPSRLMAFRHQYPDLKLCLFEGGTRDSLKMLAREEVDIAIITAQDLSPEFDSHLLLKEQMVVAMGPEHPLAEQKNISLAAFFEHELVMFKPGYFHREWMLTQAKSLGLRANIAFETNLINLIKQVVSQGFAITSVLEMVIGDKDDILAKPFQPPVFLDLHIAWKKQRPISQADKAFVDFLMKNR

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Crispr_ID: NZ_CP041614_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_10

2443132-2443243

Orphan

Consensus_repeat	Method
TACTCACTCACTCACTAGCTAGAGTAACCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_10

>merge|NZ_CP041614|10|2443132-2443243|CRISPRCasFinder
TACTCACTCACTCACTAGCTAGAGTAACCAAGCATAACTGAGTTTCATGGCTTGTATGAGGTTTGCTCATCTTTTACTCTACTCACTTACTCACTAGCTAGAGTAACCAAGC

>NZ_CP041614|10|10|2443132-2443243|CRISPRCasFinder
TACTCACTCACTCACTAGCTAGAGTAACCAAGC	ATAACTGAGTTTCATGGCTTGTATGAGGTTTGCTCATCTTTTACTC
TACTCACTTACTCACTAGCTAGAGTAACCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144046010.1\|2430440_2430872_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NZ_CP041614.1\|WP_144046018.1\|2448284_2448575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144046023.1\|2451696_2452236_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|227339
NZ_CP041614.1\|WP_144048920.1\|2436613_2437318_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NZ_CP041614.1\|WP_144046020.1\|2449348_2449819_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP041614.1\|WP_144046019.1\|2448737_2449289_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223736
NZ_CP041614.1\|WP_144046013.1\|2437347_2438565_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
NZ_CP041614.1\|WP_144046016.1\|2441975_2442581_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP041614.1\|WP_144046025.1\|2453809_2454163_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP041614.1\|WP_144048919.1\|2431168_2431861_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225767
NZ_CP041614.1\|WP_144046009.1\|2429861_2430233_-\|NAD(P)H-quinone-oxidoreductase-subunit-3	unknown	unknown	gnl\|CDD\|376344
NZ_CP041614.1\|WP_144046026.1\|2454940_2455294_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144046024.1\|2452389_2453217_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|366709
NZ_CP041614.1\|WP_144046015.1\|2440521_2441985_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP041614.1\|WP_144046022.1\|2450745_2451204_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041614.1\|WP_144046011.1\|2431922_2432891_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP041614.1\|WP_144046012.1\|2436010_2436487_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP041614.1\|WP_144046021.1\|2449818_2450682_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP041614.1\|WP_144046014.1\|2438817_2440518_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP041614.1\|WP_144046017.1\|2445959_2448146_+\|OsmC-domain/YcaO-domain-containing-protein	unknown	unknown	gnl\|CDD\|132588

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144046010.1\|2430440_2430872_-\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	5.34309e-58
NZ_CP041614.1\|WP_144046023.1\|2451696_2452236_+\|EamA-family-transporter	gnl\|CDD\|227339	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism].	3.09855e-30
NZ_CP041614.1\|WP_144048920.1\|2436613_2437318_-\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	1.25044e-56
NZ_CP041614.1\|WP_144046020.1\|2449348_2449819_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	4.24247e-57
NZ_CP041614.1\|WP_144046019.1\|2448737_2449289_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.82068e-24
NZ_CP041614.1\|WP_144046013.1\|2437347_2438565_-\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	2.28523e-35
NZ_CP041614.1\|WP_144046016.1\|2441975_2442581_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	4.4278e-110
NZ_CP041614.1\|WP_144046025.1\|2453809_2454163_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	6.24406e-05
NZ_CP041614.1\|WP_144048919.1\|2431168_2431861_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|225767	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown].	1.51275e-21
NZ_CP041614.1\|WP_144046009.1\|2429861_2430233_-\|NAD(P)H-quinone-oxidoreductase-subunit-3	gnl\|CDD\|376344	pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.	5.11569e-29
NZ_CP041614.1\|WP_144046024.1\|2452389_2453217_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|366709	pfam01569, PAP2, PAP2 superfamily. This family includes the enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 and bacterial acid phosphatase EC:3.1.3.2. The family also includes a variety of haloperoxidases that function by oxidising halides in the presence of hydrogen peroxide to form the corresponding hypohalous acids.	2.86657e-17
NZ_CP041614.1\|WP_144046015.1\|2440521_2441985_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP041614.1\|WP_144046022.1\|2450745_2451204_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.62467e-37
NZ_CP041614.1\|WP_144046011.1\|2431922_2432891_-\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	1.17416e-171
NZ_CP041614.1\|WP_144046012.1\|2436010_2436487_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.06018e-15
NZ_CP041614.1\|WP_144046021.1\|2449818_2450682_+\|EamA-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.32453e-08
NZ_CP041614.1\|WP_144046014.1\|2438817_2440518_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP041614.1\|WP_144046017.1\|2445959_2448146_+\|OsmC-domain/YcaO-domain-containing-protein	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0

>NZ_CP041614.1|WP_144046016.1|2441975_2442581_-|transcriptional-regulator-BetI
MPRPPMKAVRQQQLIDATLISVERHGLHHTTINTISDLAGTSSGLISHYFGGKQGLIEATLKHLLDELKLALLSRTSGKNLTSIERLFMIVEANFTEFQRSTPATKTWLSFWSQAVHEPGLARLQHINNQRLYSNLLFSFKQLLPESEAITASKQTAAMIDGFWLRSALSAYPEKEFEQAQLLCKAFIEAVIIQYGEHQCH
>NZ_CP041614.1|WP_144046015.1|2440521_2441985_-|betaine-aldehyde-dehydrogenase
MSLVVYQNYVHGQSLSNDTGETFEVINPATGEVSYLVEVADEKIQQAAIESAKTGFAIWSKMTPMERSRILLKAVTILRERNDELAVIEVQDTGKPWQEASEVDVVTGADSIEFFAGLAPSIEGNQQQVGDDFYYTRREPLGICAGIGAWNYPLQIACWKSAPALACGNVMIFKPSEETPRGALNLAEVFTQAGAPDGVFNVVQGDGRVGAWLTTHEDIAKVSFTGEVGTGKKVMAAAAGSLKQVTMELGGKSPLIIFNDADVDNAVSAAMLGNFYTQGEVCTNGTRVFVQQDIYPSFIEKLLERTQKNIVCGDPMDPATNFGALISKDHQAKVLEYIEIGKEEGAHLLTGGQALRPENAPNGFFVAPTIFTQCTDEMTLSKEEIFGPVMSVLTFTDEDEVIRRANDTRLGLAAGVFTQDITRAHRVIHQLEAGICWINAYGASPAEMPVGGYKMSGIGRENGSETLKAYTQIKAVYVGMQPLESPF
>NZ_CP041614.1|WP_144046014.1|2438817_2440518_-|choline-dehydrogenase
MNMTNTQTQKQSEYDYIIVGAGSAGCVLANRLSADSANKVLLLETGGSDRSIFIQMPTALSIPMNSAKYAWQFETEAEPHLDNRRMHCPRGKVLGGSSSINGMVYVRGHARDFDEWQQSGAKDWDYAHCLPYFKKAETWAFGADEYRGDAGPLAINNGNNMKNPLYQAFVDAGVDAGYLATADYNGTQQEGFGPMHMTIKNGVRWSTANAYLRPAMKRSNLTVVTHALVHKVLFQGKKAVGVRYERKGKITDIECNNEVVLSAGSIGSPHILQLSGIGEADTLAKAGIDLIHELPGVGENLQDHLEFYFQFKCLKPISLNGKLDPLNKLFIGTRWILNKSGLGATNHFESCGFIRSKPGLEWPDLQYHFLPAAMRYDGKEAFAGHGFQVHIGHNKPKSRGAVKVVSSDPHAAPSIQFNYLSHQDDIEGFRACVRLTREIINQPGLDEYRGEEIQPGTGIQTDEEIDTFVRSSVESAYHPSCSCKMGEDAMAVVDSETRVHGIQGLRVVDSSIFPIIPNGNLNSPTIMVAERAADLILGNAPLTASTVPVTLASDWQQKQRLNPPKR
>NZ_CP041614.1|WP_144046013.1|2437347_2438565_-|BCCT-family-transporter
MTTWLTIGILFTFAAIAFVIYRWGNVECIGVTPVRTFTFIAILFTSGLDVGLIMFPLTEFAGYADVTASPEYGFSNPLAIEFGFWAFLIWAFYFLTCFYFCVIEPRVKFFEIPLIKFINNLVIIGTCAFTAYLLLTNLPWYLPGMGDGETIVSSFYLIVFAVIATAVYSSTSIRYVRTLSLASTWMFLGLIVIMWAGAFLSDGSGVGEFITTFAMIGDYFGNLHHFVLPMNDYHEFYLFWWFAWSIMIGQFTSRFVGGMKTYQVLIAMMVFPSIPIAVWFTVLYYYSANEIATTGFYNLAMVMVGITFVVNSLDSLIRLYTDNLNLTVQRFGKTKYIIGNIVLMSGLTLLFQLDFLQIQWVGAVAIGLILGCFGYILAKKYKQVATIEQSPKENKIDFTKIELAN
>NZ_CP041614.1|WP_144048920.1|2436613_2437318_-|hypothetical-protein
MNNTIKNLALLGLIALPTTAMAGVSSTVTAVSDYTFNGVSQTDNGPALQASLDYAADSGWYVGTWASNVDFGSGDDTWLELDFYGGKFFQLTQSVSLDAGIAYYTYHGDSGSDEYQYPELYTKFGYASSIGQSELNFWYSWDYFGVDAGHYIMMAAHTFNIAEGHDIRIVFDRSTSLDEDKWAWDGDKAYNHYRAEYMTSWKGFDFNLAVEDTSMNMDTSDTRAVLSVARTFGF
>NZ_CP041614.1|WP_144046012.1|2436010_2436487_-|MarR-family-transcriptional-regulator
MEKYEQLLISLRRVIRAIDIHSRQLNKQSGLTGPQLMVMQNIAQLDAPLVKEIAQEVALSPATVTTIIDRLESRKLVFRTRSKTDKRKVHLSLSEDGQALLSNAPKPLQEHFITRYQNLEGWEQSQLLSAVERIASMMDAQELDAAPVLLVGQIQAEE
>NZ_CP041614.1|WP_144046011.1|2431922_2432891_-|cysteine-synthase-A
MSKIFEDNSYTIGNTPLVRLKRVSKGNVLAKIEARNPSFSVKCRIGANMIWDAEKKGLLTQDKELIEPTSGNTGIALAYVAAARGYKLTLTMPNTMSLERRKLLKALGANLVLTDGAKGMKGAIDKAEEIRQSAPEKYVLLQQFDNPANPEIHEKTTGPEIWNDTDGEVDVIVAGVGTGGTITGVSRFIKNAKGKAITSVAVEPADSPVIAQTLAGQPVQPGPHKIQGIGAGFIPGNLDLEIIDRVEAVTNEESIEMAQRLMKEEGILVGISSGAAVVAANRIAELPEFEGKTIVVILPSAAERYLSSVLFQGEFSDAENVQ
>NZ_CP041614.1|WP_144048919.1|2431168_2431861_+|TetR-family-transcriptional-regulator
MTHQLTYVGRQTSRSDGEARRLVILEATLRLIVREGIRGVRHRAVAKEADVPLASTTYYFKDIKDLISDSLTYFAEKTLWMNKKLETRSFELLKQFSSASLGADEEAYKASESTEVLVSKLTQFICTHIREQVSCRDDRILEVAFHEEALRNKQLASAIKQLDESLLATIQGFFEQLGSCSSLADAYQILGLIKLLEYQSIVRDDNSESGPEFEKIISSTIRNIIRGILA
>NZ_CP041614.1|WP_144046010.1|2430440_2430872_-|CBS-domain-containing-protein
MESIKIADYMNRHPVTFTAHMPIAEAVELFLHNKQIGGPVIDENRKVIGFLSEQDCLIKMLEATYLNENHYAVGDVMHGDPLTVKKEASVLDLAQKMTHHKPKIYPIVDEEDKLIGVINRSAVLKALDDHLRAMYERGHTRLV
>NZ_CP041614.1|WP_144046009.1|2429861_2430233_-|NAD(P)H-quinone-oxidoreductase-subunit-3
MVSASFIFYVLAIIIVTMTMIILSHALNPRGHKRSNAYPYESGIVPVGDTNIRWNVNYFLIAISFVIFDIEAVFLYLWSLVVVETSWPGLLTASLFILALFIALIYEIKQGAFNWGIRKEGES
>NZ_CP041614.1|WP_144046017.1|2445959_2448146_+|OsmC-domain/YcaO-domain-containing-protein
MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLVSSALCAAYFVKVYCKARDISTENIRLSQNNIVDPEDRYNQIFQIQVELPDDISDKHREGILRSIDRCTVKKVVQTGPEFKIETVENLDQDANAMLMGQPDDDTSTYILGKDLPLEQTISNMTGMLADLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCNFFYNDQFFGSDIANSEFVHYPNEKWFQLEEDDALPSGILDDYCLDIYNPDGELSGSNLIDTNSGMVERGICAIPYVRHSDGKTAYFPSNLIENLFLSNGMSAGNNLQEAQVQCLSEIFERAVKRQIIEQEIILPDVPMDVLEKYPSILAGIKGLEAQGFPVVVKDASLGGQFPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDVPKPTFDSMTVTEPENFVDHFIDSTGVISWRFFSSKHDYEFCEWDFSGSNEEECQSLFGILKGIGKEAYIAEFDQLGASVCRILVPDYSEVYPVEDLIWDNTNKSLHYREDILNLHSLTDDELTSLAERLEESQLDNQTDIPTLIGIVFDDNTPWGQLTIIELKILIYLALGELEDAMELVGEFLQYNDNTVARGLFYQAVHAVLEVSLDEELALEHYINNFNRMFGKDIMDNVVGSVTGEIKFFGLTQTSIKLEGIEPHLRLIESYKKLHQARKVSASN
>NZ_CP041614.1|WP_144046018.1|2448284_2448575_+|hypothetical-protein
MKKIDYLVKVTILPEDLKQASNDRACELFRTYQIYQLLVESHLLWRVCLIDEFDHTWVEVNFINNDGEPEFHTIKLDEGTYQRVEFDTYRVLDSLA
>NZ_CP041614.1|WP_144046019.1|2448737_2449289_+|cyclic-nucleotide-binding-domain-containing-protein
MNGMTEQLRDLLEKSRHSSSYPLAKGQQLFNCGDKTAHVYWLEQGLLCAYFVTAEGKEFCKEFYWQGDVIYGMRSLLGNEPLPYSVVALEPCNLLRLSVDVYRTMIDQDPQWADYHREQLEQHLLIKERKEAFLLLNTPEQRVFAFHRDYGFLLHRIKDYQIASYLAMTPISYSRIKKRLNLT
>NZ_CP041614.1|WP_144046020.1|2449348_2449819_+|GNAT-family-N-acetyltransferase
MHFITKSFKELTIDELYELLQLRIEVFVVEQTCYYQDLDDKDRHPGAQHLLGYHDGRLAGYLRTLPRGVSYPEYQSIGRVVTSDAVRGQGTGHQLLEEGVALCLAQDAELAIKISAQEHLQGYYGRQGFVTVSDVYQEDGIDHVAMVRAPQQLISQ
>NZ_CP041614.1|WP_144046021.1|2449818_2450682_+|EamA-family-transporter
MKYSGGLLMAMALLVLGNLFATLSDVVVKALGDGNTVFQYLWLRQVATLVLVFPLWWAQGPSQRRPGAIKIHLLRAHLSIIGATCTLFALLHLSLATANVIFYAAPLLTVLAAFIWLKEKVQRQRIINAVIGFIGVMIALRPDQLHWAALVAFVVAITITGFNLLVVKLPKTISVVSVMMWTNLCALPVTSILVLATWQPMSGQEFQDLLILGTCAAITVGIYQGCVVLAFRQADASAAVIAEYSGLIFAALFGYYLFNESLDIYTSMGILLIILPIALQAWQGKRQ
>NZ_CP041614.1|WP_144046022.1|2450745_2451204_-|AsnC-family-transcriptional-regulator
MDAIDLKILEQLQIDAKVSMGDLAHKIGLSEPACYRRVRLLRKSGVIEREIAVVKPKSMGWPLSMMVMITLERDHSSILNQFLTRINKEPEVLDSWYVTGDFDLILRVVAKDMEAYDEFTTRVLHKDDSVKVFQTQVVMRHAKINGPIPASL
>NZ_CP041614.1|WP_144046023.1|2451696_2452236_+|EamA-family-transporter
MGGLSGCWDSDFTANFNQCDESRRDRCALRIGRWRLLGAYVIAGKKAGRQHGQKAPALGLIVASILVFPIGIEKLSFSIIDWNVIMLIALIALLSSVIPLILEMKALRHLPTKTYGVLTSGEPVVGAAVGFFMLGEQLTTLQLLGLATIVIASIGTVTSPIPNIKRVNNKKAMGVTMTK
>NZ_CP041614.1|WP_144046024.1|2452389_2453217_-|phosphatase-PAP2-family-protein
MPAFKQINKRSIDKTNSLMSGFPIILCILFLLHLFTLNQASNYLIFHGINEMSNYMPNWISALVSDFGNGITLGALILCYLVKRPELICRVLLAALLSLIFVPLLKQYFDAPRPAVILEHLNVIGEARHKHSFPSGHSATAFLFAGLIYLSNQQAFLRMSMIFMATLVGISRILVGAHWPADVVMGAIVGLSCAYAASHICPLIRLTFRKRLLAYLLFFSALVSSELHTGYDFSDISIVQYVRWGLLTLSIAAVLMFAMRETMASITAKRQRLHP
>NZ_CP041614.1|WP_144046025.1|2453809_2454163_+|YkgJ-family-cysteine-cluster-protein
MNNNREIIAILRERIPSFECVKGCHDCCGPVTTSSEEMSRLPVKTDAEHEAALDEWNCVHLGPNGCEVYEERPLICRVFGTTPNMPCPNGCRPKEMIDSKTEGQIHHYIANTRQVLV
>NZ_CP041614.1|WP_144046026.1|2454940_2455294_-|hypothetical-protein
MADVQLGGGIGSAVLTYGHIPSSLQVTRKANTSNYGSADNSAAVYESITQVLALDAEHLKGESSVVTRQWGIYIHGNDNFVNFVPKGLSVESQCFLQYSGINAQGDKVRVELIDSSC

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Crispr_ID: NZ_CP041614_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_11

4021589-4021694

Unclear

Consensus_repeat	Method
ACAATAAACGACTCATGAAGCTTCAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP041614_11

>merge|NZ_CP041614|11|4021589-4021694|CRISPRCasFinder
ACAATAAACGACTCATGAAGCTTCACCTATGGCGTGATCAGATTGACCAGCGAGATAGAAGCGCCATCCCACACAAAATAACAATAAACGACTCATGAAGCCTCAC

>NZ_CP041614|11|11|4021589-4021694|CRISPRCasFinder
ACAATAAACGACTCATGAAGCTTCAC	CTATGGCGTGATCAGATTGACCAGCGAGATAGAAGCGCCATCCCACACAAAATA
ACAATAAACGACTCATGAAGCCTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144047096.1\|4024491_4027977_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182649
NZ_CP041614.1\|WP_144047098.1\|4029013_4029289_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|184676
NZ_CP041614.1\|WP_144047089.1\|4014422_4015445_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP041614.1\|WP_144047097.1\|4027966_4028920_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371320
NZ_CP041614.1\|WP_144047099.1\|4029703_4030243_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|179896
NZ_CP041614.1\|WP_144047095.1\|4023822_4024416_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047084.1\|4000022_4001315_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP041614.1\|WP_144047091.1\|4019635_4020148_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP041614.1\|WP_144047086.1\|4007389_4010446_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP041614.1\|WP_144047090.1\|4015448_4017269_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP041614.1\|WP_144047088.1\|4014253_4014433_-\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
NZ_CP041614.1\|WP_144049026.1\|4002274_4002634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047100.1\|4030339_4031350_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NZ_CP041614.1\|WP_144047085.1\|4004123_4007393_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223911
NZ_CP041614.1\|WP_144047103.1\|4034372_4035146_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047087.1\|4013344_4014067_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|274749
NZ_CP041614.1\|WP_144047101.1\|4031701_4033078_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP041614.1\|WP_144047094.1\|4022492_4023725_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP041614.1\|WP_144047102.1\|4033171_4034146_-\|HTH-type-transcriptional-regulator-CysB	unknown	unknown	gnl\|CDD\|183678
NZ_CP041614.1\|WP_144049027.1\|4003040_4004111_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144047096.1\|4024491_4027977_+\|transcription-repair-coupling-factor	gnl\|CDD\|182649	PRK10689, PRK10689, transcription-repair coupling factor; Provisional.	0
NZ_CP041614.1\|WP_144047098.1\|4029013_4029289_-\|acylphosphatase	gnl\|CDD\|184676	PRK14429, PRK14429, acylphosphatase; Provisional.	1.59723e-58
NZ_CP041614.1\|WP_144047089.1\|4014422_4015445_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	7.75304e-160
NZ_CP041614.1\|WP_144047099.1\|4029703_4030243_-\|alpha/beta-hydrolase	gnl\|CDD\|179896	PRK04940, PRK04940, hypothetical protein; Provisional.	9.27432e-127
NZ_CP041614.1\|WP_144047097.1\|4027966_4028920_+\|hypothetical-protein	gnl\|CDD\|371320	pfam10972, CsiV, Peptidoglycan-binding protein, CsiV. CsiV, a small periplasmic protein (cell-shape integrity in Vibrio), is essential for growth of Vibrio cholerae in the presence of DAA, non-canonical amino-acids, the typical components of peptidoglycan side-chains in Vibrio cholerae. CsiV interacts with LpoA, the lipoprotein activator of penicillin-binding-protein1A that is necessary for mediating the assembly of peptidoglycan. CsiV acts through LpoA to promote peptidoglycan biogenesis in V. cholerae and other vibrio species as well as in the other genera where this protein is found.	5.00532e-57
NZ_CP041614.1\|WP_144047084.1\|4000022_4001315_+\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP041614.1\|WP_144047091.1\|4019635_4020148_+\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	7.25862e-49
NZ_CP041614.1\|WP_144047086.1\|4007389_4010446_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP041614.1\|WP_144047090.1\|4015448_4017269_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP041614.1\|WP_144047088.1\|4014253_4014433_-\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.05358e-22
NZ_CP041614.1\|WP_144047100.1\|4030339_4031350_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NZ_CP041614.1\|WP_144047085.1\|4004123_4007393_+\|MMPL-family-transporter	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP041614.1\|WP_144047087.1\|4013344_4014067_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|274749	TIGR03724, Probable_serine/threonine-protein_kinase, Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. [Unknown function, General].	3.98125e-05
NZ_CP041614.1\|WP_144047101.1\|4031701_4033078_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP041614.1\|WP_144047094.1\|4022492_4023725_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	1.34748e-155
NZ_CP041614.1\|WP_144047102.1\|4033171_4034146_-\|HTH-type-transcriptional-regulator-CysB	gnl\|CDD\|183678	PRK12681, cysB, HTH-type transcriptional regulator CysB.	0
NZ_CP041614.1\|WP_144049027.1\|4003040_4004111_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.68625e-56

>NZ_CP041614.1|WP_144047091.1|4019635_4020148_+|DUF2062-domain-containing-protein
MPKKFIEKFMPKPETLRNHKHLQMFGKLLHKENLWALNRRSAPTAFAVGLFVAWLPMPFQMVLAAALAIVFNCNLPIAVALVWITNPVTMPFMFYAAYLLGAKILSHPPQEFAFEATWRWVEASVFTIGPPFMLGCLVLGSVFALIGYFLIKTLWRYSILLKWKSRNSLK
>NZ_CP041614.1|WP_144047090.1|4015448_4017269_-|lipid-A-export-permease/ATP-binding-protein-MsbA
MTNSSNQEVWTVFKRLMGYIKPLKVVFGFAVLGLFMYAAVDATFIAVIKPFIDGGFGGQVSQVTSSSGVANIDLGTSDGFGASSDVLMMAPIVVIVLFSLRGLANFLSTYCISFMSARLIMDLRQEVFEHYLTLPVSYIDRENSGNLISRVTYDTEQIARATGSALITIVRDSITVVGMLAIMFFYSWKLSLCIFVIGPIIGLIISIVSKRFRKVSKRIQAAMGGVTAATEQMIKGHKNVLAFGGQEAESERFALVNEQNRYQNMKLALAQSISQPLVMVIGSFALAFVLYAASFEGMQEELTAGTFATILGAMLAMLQPIKSLTRVNAEFQRGIAACTTVFELLDTKSEVDNGTYQVERVKGELRFNQVSFRYPTQEKLALNKIDFSVKQGQTIALVGRSGSGKSTIASLITRFYTGLEEGSIELDGVNIDDFGLKSLRSQVALVSQQVTLFNDTIGNNIAYAYPGEVTQEQIIEAATLAHAMEFIELLPEGLDTQVGENGVLLSGGQRQRIAIARAILRNSPVLILDEATSALDTESEKAIQLGLDNLRHNRTSIVIAHRLSTIESADQILVIDQGVVVERGDHLSLLAQDGVYANLYKMQFSS
>NZ_CP041614.1|WP_144047089.1|4014422_4015445_-|tetraacyldisaccharide-4'-kinase
MQAFANKLWYPDKDAHPVFRLLKYLLLPLTLLFWVVSLIRRSLFKSGLKQSHSLPVPVIIVGNITVGGSGKTPTVLYLIEVLRKHGLKPGVISRGYGVKFEGVKRVEPQMQAAEVGDEPAMIVARTGVPMVIGADRVKAAEKLLADTHVDVIISDDGLQHYRLGRDIELLILDGERRFGNGMLLPSGPLREGRWRAQSVDFILVNGQAGDNELQMELLPQGIFPVSPSSKHTYEPTPVVAVAGIGNPQRFFNTLDEQGHTVIKTHGFEDHQKFTLDALIQVAGEQPILMTEKDAVKCRGFAKDNWWYLAVDAKLPTRFEADLMDKVHGAMKKKQGKSDGV
>NZ_CP041614.1|WP_144047088.1|4014253_4014433_-|Trm112-family-protein
MAFDRKLLEIVACPVCKGKLDYDKAKQQLICKADRLAYAINDGIPVLLENKAEPWQDEA
>NZ_CP041614.1|WP_144047087.1|4013344_4014067_-|serine/threonine-protein-phosphatase
MPEQTFEAVVGKILNDNQGTRVLKFEHQGQFYWLKQAEKLTGAMRFLKQSPAKALKIEVETLAMLASKGAQVPRLMCSSADYFVIADVGPTISSWLSDKTLTQEEKQQILNDSATALANLHTLGLAHGRPALRDISWSEGLVHFIDFEASQNSKDIAYQQRRDLLVYIHSLYRYMGPEHEMITPAIQAYRDAGGEAIWLNAKQWLTPWQWIYPGLRLFKDIGGKDLRPMYWLLWHFRQVA
>NZ_CP041614.1|WP_144047086.1|4007389_4010446_+|efflux-RND-transporter-permease-subunit
MNLTRLAISRPVTTSMFFVAILLFGLASSRLLPLEMFPGIDMPQVNIEVPYKGSTPAEVERDITSILEESLATMGGIEELRSSSSQNGAEIELRMKWGENVATKSLEAREKIDAVRHLLPKDVERVFIRQFSTADMPVLNLRISSDRELSGAFDLLDKQLKRPLERVEGVSQVTLYGVEQKQIEIRINADKLSASGISIPYLQQRLQQENFIVSAGILRANSRVYQVSPKGEFRNLDDINAVVLKPGITLGDIATISFSLPERLDGRHLDKNYAVGLDVFKESGANLVDVSARVMKVIEAAKQDEQFDGIKLFVMEDQAYGVTSSLNDLLTAGLIGGLLSFAVLYLFLRNLKMTLVVVTSVPISICMTLAAMYLLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQEKQAKGSSSSKESDSAVLTGVNKVSLAVLAGTLTTGIVFLPNIFGVKVELTIFLEHVAIAICISLAASLLVAKTLLPLMLSKMNIEVETKDKESKLQTYYHKSLDWILTRPRTSGVISLIILASTALPLSMVNQDQSDGEGNNKLYINYQVEGRHNLDVTEAMITKMETYLYANKDKFHIDSVYSYYAPDRGQSTLILKQDTQVDMKDLKQVIREGFPKFSIAKPQFGWGGGNNGLRVTLTGRSTSDLIEISQRVIPLLSEIEGLTDVRSELSGAQQEVVIQIDRQMAARLDLKLNEIASSISMALRGSQLRSFRHDPNGELRIEMSFEQEWRLSLERLKQLPVIRIDNRVYTLDSLASITISPRFDTIRHYDRQTALSIGANLDDLTTEEAQEKITQVMETVNFPAGYGYSLRGGFEKQDEDQAVMATNMLLALAMIYIVMAALFESLLLPTAIITSILFSITGVFWGLLFTGTPMGVMVMIGILILMGIVVNNGIVLVDQINQKEPALDKLSGEISQVCISRLRPVLMTVGTTVLGLLPLALGDTQLGGGGPSYSPMAIAIISGLTFSTVTSLYLVPLCYQALYRMRYNAAVRLGRANSLSRRLMPWAY
>NZ_CP041614.1|WP_144047085.1|4004123_4007393_+|MMPL-family-transporter
MSIITTSVRRPVTVWMFMLAVILFGMVGFSRLAVKLLPDLSYPTITIRTLYVGAAPVEIEQLVSKPIEEAAGIVKGLRKISSISRSGMSDVVLEFEWGTDMDMASLDVREKLDTIILPLDVKKPLLLRFNPNLDPIVRLALSVPDASDNELKQMRTYAEEELKRQLESLTGVAAVRLSGGLQQEVHILLNQEKLTQLNLNADKIRNRIAEENINLSAGKVVQGDKEYLVRTLNQFNSLEELGEIIVYRDAQTLVRLFEVADIVDAHKERNDITRIGDQESIELAIYKEGDANTVAVARKVNAALKELNANQVKSELTVIYDQSEFIESAVSEVTSSALIGSLLSMLIIYLFLKDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENIDRCRSLGMSKLEAAVTGTKEVSGAIFASTLTTLAVFVPLVFVDGVAGALFSDQALTVTFALLASLLVALTTIPMLASREGIKSLPPLLAKEKKPTPETKMGKLTHYSATVFSFPFIVLFSYLPSALLTLALMFGRLLSWFTGLFMRPLSQGFNWCYHKLEILYHLLLALALRFKVMTLSIAILVTLGAASLVPKLGMELIPPMNQGEFYVEILLPPGTEVSETDKILRRLALSIKGREDVKHAYSQAGSGGLMTSDTSRGGENWGRLQVVLADPDAFDAVASVLRTTAMRIPELEAQIQHPELFSFKTPLEIELIGYDLTQLKQTANDLVDALSDSDRFADLKSSLRDGQPEISIRFDHQRLAALGMNAPTVANRIAQRIGGTVASQYTVRDRKVDILVRSEIDERDQISDIGAMIINPDSSYPIALSAVADVTLKLGPSAINRISQQRVAIVSANLAYGDLNEAVLEARNILAKQTLPTSIQARFGGQNEEMEHSFQSLQIALVLAIFLVYLVMASQFESLLHPLLILFAVPMAVGGSILGLYVTGTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRQEGKEKMAAISEAAKSRLRPIIMTTMTTALGLSPMAFGLGDGSEVRAPMAITVIFGLILSTLLTLVVIPVLYALFDRKQYAPAESKEAQDAQLASEGGQA
>NZ_CP041614.1|WP_144049027.1|4003040_4004111_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MQTRPLNGFKFALPLLLVSVLSACSGEEPPKEEEKYAVPVETTTVIQGDVSSFYSTTATLEAPEEAKVVTRIAGLIEAIEVEEGDRVTKGQLLAVIDAKRQRYDLARSQAEVEIIEQELNRLKKMGNREFISADSMAKLEYNMQAAIAKRDLASLQVEESMVRSPIEGVVATRFVKKGNMAKEFDELFYIVNQDELHGIVHLPEQQLQSLRLGQDAQVFANKHSQDTVHAKVLRISPIVDAQSGTFKVTLSVPNDNAKLKAGMFTRVELRYDTHNNVITVPYNAVVNQDNQFALYVIDGTNVNRREVSLGYREADTVEIIAGIEPGEQIVIRGQQNLKDQSLVEVISSLDLASVEK
>NZ_CP041614.1|WP_144049026.1|4002274_4002634_-|hypothetical-protein
MKNVVVMALMSVFLFSPNLHAQNLLKDAVRMNRDIKDNKYKYKHEYNKTKNKVNRATGNARDLADGSYVDKKLDKMEHNASRKINRAKDRLDSRDEIAEEMRRDIKQGKREAVDKWLAD
>NZ_CP041614.1|WP_144047084.1|4000022_4001315_+|citrate-synthase
MADNIAKLELPGNDSIDLPIKKGTAGFDVIDISKLGSKGHFTFDPGFLATASCESAITYIDGAQGILLHRGYPIGELAVNSDYLDLCYLLLYGELPTTTQYEQFVHTVKNHTMVNEQLVAFFKGFRRDAHPMAMLCGVTGALSAFYQDSLDVNDERHREIAAFRLVSKMPTIAAMCYKYSIGQPFVYPRNDLSYAGNFLSMMFAVPCEEYEVNPIVERAMDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIASLWGPAHGGANEACLNMLEEIGTVDRIPEFIARAKDKEDPFRLMGFGHRVYKNFDPRAKVMRETCHEVLKELNVNDPLLDVAMELERIALEDDYFVSKKLYPNVDFYSGIIMKAIGIPTSMFTVLFALARTVGWIAHWKEMLDQPGHKISRPRQLYTGAPERSFVSQDKRES
>NZ_CP041614.1|WP_144047094.1|4022492_4023725_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MNLALSSHIGFRYWRARKANGFASFITFFAVSGILLGVAALIIVSSVMNGLEGQLKQRILGAVPQLTVHSTTPIEQWQSKITELSKLPGVIGVTPSISNQAMIQSSSNISAIQVYGIYPNFEHDLLASMQRSFNGSFEQLEAGKYRIVLGSLLARRLDVSSGDKVRLLSGEGVIYSPLGPVPSQRSFVVAGVFEMGSQVDANLAYVHYEDAQRLMRQKPGEVKHLRFYLDDPFDAANLSADVVAEFSKDDLKVTTSDWRETYGHLFGAVKMEKNMMSLMLSLIIAVAAFNIVSALVMMVVDKTSDVAVLKTQGLMTSDVMGIFMIQGSLNAIIGLVFGLVVGIAITLNLNTILNTFGISVLGAGQSLPVQLEWSQMSLIVLGTLLISFFATVYPAMRAAGVQPANALRHE
>NZ_CP041614.1|WP_144047095.1|4023822_4024416_+|hypothetical-protein
MFTDSTPYFSVKHDFTAYLSPWPKEQALPTEYELRAMLPTGLLLINEVKTLESDCLLQLRHLDDDAKTVVDYLKLQSRKIDLVLQYVLEREQHEGKQYRGAHFGGSGIRIISDTQLVENDQFKITLHIRDELVALLCFVTVTVSEPLDTDDNQASCQYISSLEFTQILETDVEQLVKASLSVQQKQLKLRKQAKTNS
>NZ_CP041614.1|WP_144047096.1|4024491_4027977_+|transcription-repair-coupling-factor
MKSFSILTPPAVKSASKAQTLYTLGGASQAITLANLVQHHVGITVAVTHDTPTALLLESELDYLLKGTDFPVWLFPDRETLPYDSFSPHQDLVSQRLETLSRLPNAKQGLVIVPLSTLMVRLPPKSFLAGNVLMLKKGDNYCLQDVKQQLVNTGYHLVEQVYEHGEFAVRGSIIDLFPMGSEQPFRIELFDDEVESIRHFEPESQRSSGQIDSIRLLPAKEFPTDDKAIEGFRQRYRRRFERLVKEPESVYQMVSRKIFPAGIESYLPLFFDETASLFDYLPEHAQLVNIGDLEAASKAHLAEVELRYEDRRVDPLRPLLEPKELYLLTEQIFAHFKTLPRSQLKIGEDSDKVSDKGHQAKLEKLPELTANHKLKQPLLQLQEYATKETSILFSAESEGRREALLELLGKIDIKPKRFGSLEEFTASKTKLGLIVSPLSNGCIIEKSRGGKFSLVCETELFGHRISQKRRRDRQKQISSDALVKNLAELKVGQPIVHLDHGVAKYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSSLHLISRYSVGPDEEANLNKLGNETWAKAKKKAVEKICDVAVELLDVYARRQARPGTACKVDEQEYAQFANSFPFEETVDQETSINAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHFENFKDRFADWPVKIEVISRFKTAKEQKLIMDELSNGKVDIIIGTHKLLHSEGDFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDPTTIREALLREILRGGQAYFLHNKVETIEKRANEIRELLPEARVVTAHGQMRERDLERVMSDFYHQKFNVLVCTTIIETGIDVPSANTIVIERADNFGLAQLHQLRGRVGRSHHQAYAYMMTPPPKSISSDARKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLSQMLRRQCEIELRIPALLPDDFVHDVNIRLSLYKRIANCDSENAIDELKVELIDRFGMLPDATKNLMELTLYKHMATRLGIKKLEMHAKGGSLEFNDDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLIPAESHKDRLALVKLLLGQLSQHRLGE
>NZ_CP041614.1|WP_144047097.1|4027966_4028920_+|hypothetical-protein
MENNVLRQTFLIIAGLLSISQQAYAQNERWFEVEVYLFERSNGQSQEQAPAQVSFQNPKRMVDLISPLFSTNITGASLGLDACSAHDWATKADECNQQLSSSAQMNHPSQIPWSIAAPSTQYGVPGGAPVLLANSQNQFKDIISKLSRERGTKSLLHMTWQQAMQPRRRAKPVRIFSGKDYSSRFELNGQSTLSQTTQSDVPEFDFLGGSFGVVEHKAVWKLDGTINIYLDHYLYVETALNLREEGTKTLDVMRDNTRYNSSEVNLSTPFLYSFPMKQNRRVRSDEVHYFDHPRMGMILQIRKMQQPIDRLNTQILE
>NZ_CP041614.1|WP_144047098.1|4029013_4029289_-|acylphosphatase
MKRVKINVQGKVQGVCYRRYALSKAKALGLTGYVSNDDDGNVTILAQGAFPAVDNLIDWCQIGSPQSNVSQVFVEEDEADEIYLDFSIVQS
>NZ_CP041614.1|WP_144047099.1|4029703_4030243_-|alpha/beta-hydrolase
MILYLHGFDATSPGNHEKMRQLQFIDKDVRLVSYSTQHPKHDMQQLLNEVSRQLQQSDDTAPLILGVGLGAFWAERIGFLNGLRAVLINPNLSPEINMVGQIDRPEEYADITSKCVDKFRSKNEGKALVILSRSDDVNNNAQVYDELSEYYQVIWDEDQPHKFPVLASQLSTIASFKLG
>NZ_CP041614.1|WP_144047100.1|4030339_4031350_-|beta-N-acetylhexosaminidase
MSYLMLDLLSTQASEAELEQLKHPMVGGLILFTRNFVDREQLIALIKSIREVRSDLIIAVDHEGGRVQRFRDGFTLIPAMGDILSHAGGDVSKAQTWAVELGFLMAIELLACDIDLSFAPVLDLDRVSRVIGKRAFGSEPEIVISLAESFISGMNQAGMAAVGKHFPGHGSVETDSHLAQAVDERCEAEIRNLDMLPFKTLIEQQKLQGVMPAHVIYPKVDPNPAGFSPYWLKQVLRGELDFQGVIFSDDLGMKGAGVVGGYKQRAKAALDAGCNMILVCNDAAGAAEVLNELDWPSEKPDRAANLLKPDAYLVAQALQQEERWKKAKALAETFNQ
>NZ_CP041614.1|WP_144047101.1|4031701_4033078_+|L-serine-ammonia-lyase
MISVFDMFKIGIGPSSSHTVGPMKAGNIFIDDLDKAGLLERTDELRSELFGSLGQTGKGHGTGKAVILGLMGEAPDTVNTDSIDGILKDVSQNQQLLMANGKHVIFSRDSGVIYHRRKSLPAHANAMTLYAYSAGECIYDRTYYSVGGGFILDQDEIKAQDASPALPIESAPFDFNSAAQLLEFCNSNGLSISALMMENELSIAEDADIREQLWHIWQTMKDCVERGYHKEGLLPGGLKLRRRAPAMYRRLKAEGKNSVDPLTALDWVDLFALSVNEQNAAGDRVVTAPTNGAAGIIPAVLCYYDKFVQEVDSDICCRYLLTAAAIGILYKKNASISGAEVGCQGEVGVACSMAAAALTEIMGGTVEHVENAAEIGMEHNLGLTCDPVGGLVQVPCIERNAMGAVKAINASRMALRGDGNHKVSLDKVIKTMMDTGKDMRSKYKETAKGGLAVNIVEC
>NZ_CP041614.1|WP_144047102.1|4033171_4034146_-|HTH-type-transcriptional-regulator-CysB
MKLQQLRYIAEVVNHNLNVSATAENLYTSQPGISKQVRMLEDELGIQIFGRSGKHLTHVTPAGEQVISIANNILGKVESIKKVAEEYTKPDQGELNIATTDTQARYALPKIIRGFIDRYPKVNLHMHQGTPSQISELAARGAADFAIATEGMHLYSDLIMLPCYHWNRSIVVNRDHPLATRSNITIEDLGRFPLVTYVFGFDRESEIEKSFNRAGLEPRVVFSATSADVLKTYVRLGLGVGVIASMAIDPTMDRDLVAIDASHLFGHSTTKIGFRKGNFLRTYMYEFIEHFAPHLTKEVVEKAVALRDPQLIENMFADIDLPVR
>NZ_CP041614.1|WP_144047103.1|4034372_4035146_+|hypothetical-protein
MIFTLVLISIGALLLLVIGINVIQQQKERAEAERRTELARQRAIIDETEEVLSHTGMFPCSSQIVLVLYKRVEDALGLAANYAASQAGDYKRRQADIGAQVKTLAASPKQAPSIESFRLPDNDQQILTLVQVLKKLKAILRAEHNKGKVDPTIFSEEEGRIDSLQLRINVDSMLSRARAACFMKQYGSSKQMVTKALSTLHAIKAQTPNDPFIVKKVDEAKAMLDEIIGAQKIASPEVTPVKEEEDIDVLFQPKKKW

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Crispr_ID: NZ_CP041614_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_12

4468616-4468714

Orphan

Consensus_repeat	Method
CCCTCTTACACCATCCCTGGTGTCCGGGGATAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_12

>merge|NZ_CP041614|12|4468616-4468714|CRISPRCasFinder
CCCTCTTACACCATCCCTGGTGTCCGGGGATAACTCTTAACTATGAGACATCCATGTACAAATCCCCTCTTACACCATCCCTGGTGTCCGGGGATAACT

>NZ_CP041614|12|12|4468616-4468714|CRISPRCasFinder
CCCTCTTACACCATCCCTGGTGTCCGGGGATAACT	CTTAACTATGAGACATCCATGTACAAATC
CCCTCTTACACCATCCCTGGTGTCCGGGGATAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144047399.1\|4476087_4476846_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181297
NZ_CP041614.1\|WP_144047392.1\|4463303_4464428_-\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
NZ_CP041614.1\|WP_144047397.1\|4470587_4472861_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP041614.1\|WP_144047404.1\|4482805_4483996_-\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180775
NZ_CP041614.1\|WP_144047396.1\|4468796_4470389_-\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP041614.1\|WP_144047394.1\|4466637_4467033_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047400.1\|4476850_4477771_-\|3-hydroxyisobutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|130753
NZ_CP041614.1\|WP_144047389.1\|4457998_4458553_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP041614.1\|WP_144047390.1\|4459119_4460400_-\|putative-methylaconitate-Delta-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
NZ_CP041614.1\|WP_144047388.1\|4457653_4457845_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144049053.1\|4473077_4473461_+\|MerR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|133383
NZ_CP041614.1\|WP_144047391.1\|4460607_4463229_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|131386
NZ_CP041614.1\|WP_144047403.1\|4481069_4482575_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP041614.1\|WP_144047386.1\|4455565_4456231_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047398.1\|4473543_4475616_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP041614.1\|WP_144047395.1\|4467178_4468540_+\|leucyl-aminopeptidase-family-protein	unknown	unknown	gnl\|CDD\|238247
NZ_CP041614.1\|WP_144047387.1\|4456797_4457667_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP041614.1\|WP_144047401.1\|4477824_4478964_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|379770
NZ_CP041614.1\|WP_144047393.1\|4464605_4465484_-\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086
NZ_CP041614.1\|WP_144047402.1\|4479761_4480919_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173851

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144047399.1\|4476087_4476846_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181297	PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	3.74422e-165
NZ_CP041614.1\|WP_144047392.1\|4463303_4464428_-\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
NZ_CP041614.1\|WP_144047389.1\|4457998_4458553_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	1.09019e-18
NZ_CP041614.1\|WP_144047404.1\|4482805_4483996_-\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	0
NZ_CP041614.1\|WP_144047396.1\|4468796_4470389_-\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP041614.1\|WP_144047400.1\|4476850_4477771_-\|3-hydroxyisobutyrate-dehydrogenase	gnl\|CDD\|130753	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase. 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). [Energy metabolism, Amino acids and amines].	8.45859e-124
NZ_CP041614.1\|WP_144047397.1\|4470587_4472861_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP041614.1\|WP_144047390.1\|4459119_4460400_-\|putative-methylaconitate-Delta-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
NZ_CP041614.1\|WP_144049053.1\|4473077_4473461_+\|MerR-family-DNA-binding-protein	gnl\|CDD\|133383	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	1.80848e-55
NZ_CP041614.1\|WP_144047391.1\|4460607_4463229_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|131386	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) ().	0
NZ_CP041614.1\|WP_144047403.1\|4481069_4482575_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP041614.1\|WP_144047398.1\|4473543_4475616_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.79192e-68
NZ_CP041614.1\|WP_144047395.1\|4467178_4468540_+\|leucyl-aminopeptidase-family-protein	gnl\|CDD\|238247	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.	2.3976e-165
NZ_CP041614.1\|WP_144047387.1\|4456797_4457667_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	9.50792e-07
NZ_CP041614.1\|WP_144047401.1\|4477824_4478964_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|379770	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase. This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from pfam00378 in the structure of it's C-terminus.	1.24045e-155
NZ_CP041614.1\|WP_144047393.1\|4464605_4465484_-\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0
NZ_CP041614.1\|WP_144047402.1\|4479761_4480919_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173851	cd01162, IBD, Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.	0

>NZ_CP041614.1|WP_144047395.1|4467178_4468540_+|leucyl-aminopeptidase-family-protein
MTELLISGALGTPLTILHTDAYSTWLAEQDTQTTNWLATTQFDGKGMSLIPNGAGELSQAIYVSSELDSYWLCGDLVNQLPAGRYTIQGSEEQIKVAAFSWGLGAYKFDRYKHNDKVYPQLVLPTQAQADEVKKLVRSVAIVRDLVNTPAADMMPQHLGEIMENLASEFGASITQIVGDELLEQNYPTIHMVGRASENLPRLIDMTWGDENAPKVTLVGKGVCFDSGGLDLKPGAGMRLMKKDMGGAAHVIGLAHQIMASNLPIRLRVLVPAVENAVSANAFRPGDVIKTRKGITVEIDNTDAEGRLVLCDALAEANNDKPELMIDFATLTGAMRIALGTELPGFFSNDDQVAADMTQSGLKVQDPIWRMPLHKPYLELTGSDIADLANCGRVPQGGAITAALYLEAFVDENISWSHFDVMAWNTRKLPGRPVGGEAFGIRAVFDYLQTRFSK
>NZ_CP041614.1|WP_144047394.1|4466637_4467033_+|hypothetical-protein
MKIYAHIHKAPIRVFRIGRKRFWIRLKRDMLILKDALSQEKQETKDMLVTYKRYTKKQASREELAEANKQFGDLLKGLGLGVFAVLPFAPLTIPLVVKLGKMVGVDVLPSSFNNLSRKRKKRSEKLAENEK
>NZ_CP041614.1|WP_144047393.1|4464605_4465484_-|methylisocitrate-lyase
MSAGKKFRQALADNAPLQIVGTINAYTAMMAKQIGHQAIYLSGGGVANASYGLPDLGMTSLNDVIVDVQRITSACDLPLMVDIDTGWGGAFNIAKTIRDMEKAGAAAVHMEDQVAQKRCGHRPNKEIVSTEEMVDRIKSAVDARTDPDFFIMARTDSFAQEGLAAAIARAKAYVAAGADGIFAEAVKTEEHYRAFSEALDVPILANITEFGQTELWNKEQLGEWGCAMVLYPLSAFRAMNKAAEMVYETILKDGDQKAVTDKMQTRMELYDYLGYHAYEQKLDVLFSEGKNK
>NZ_CP041614.1|WP_144047392.1|4463303_4464428_-|2-methylcitrate-synthase
MVDKKLSGAGLRGQSAGETSLCTVGKSGSGLTYCGYDVSDLADNTSFEEVAYLLFNGELPTVDQLETYKAELSTLRDLPQALKEVLQRIPQDAHPMDVMRTGCSFLGNLEPENDFSEQNRAANRLLAAFPAIMCYWYKFSHEGVEIDCVTDEASIGGHFLHLLNGKAPSEQHRRVMDVSLILYAEHEFNASTFTARVCASTLSDMFSCITGAIGTLRGPLHGGANEAAMDMIQSFSSPADAKVQMAGMLERKEKIMGFGHAIYRTSDPRNVIIKAWSEKLAQENGDTSLYDISVACEEFMWDSKKLFCNADFFHASAYHFMGIPTKLFTPIFVCSRLTGWAAHVMEQRTNNRIIRPSADYTGSEPRKVTPIETR
>NZ_CP041614.1|WP_144047391.1|4460607_4463229_-|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MNTQYRKSLPSSKLDYFDTEAAVDAISPGAYRKLPYCSRVYAENLVRRCEPAKLTDSLKQIIERKQDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAAKGGDPSKVNPVVPTQLIVDHSLAVEHAGFEKDAFEKNRAIEDRRNDDRFHFINWTKTAFKNIDVIQPGNGIMHQINLEKMSPVIQSRDGVAFPDTLVGTDSHTPHVDALGVIAIGVGGLEAESVMLGRPSYMRVPDIVGVELVGKRQSGITATDIVLAITEFLRGEKVVSTYLEFYGEGARALTLGDRATISNMTPEFGATAAMFYIDEMTIDYLKLTGRDDSQVKLVENYAKHAGLWADTLKDAEYERVLHFDLSSVGRNIAGPSNPHRRVSTSDLAKKGISGHFDMSQDADGKDLMPDGACIIAAITSCTNTSNPRNVIAAGLIARNANAKGLTRKPWVKTSLAPGSKAVQLYLEDAKLLSELEQLGFGIVGFACTTCNGMSGALDPVIQKEVIDRDLYTTAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGKDSQGNDVTLKDIWPSDEEIDKVIAQSVKPEQFRKVYEPMFDIKVEYGSDNDPLYDWRPQSTYIRRPPYWEGALAGERTMKGMRPLAVLGDNITTDHLSPSNAIMLESAAGAYLDKMGLPEVDFNSYATHRGDHLTTQRATFANPKLFNEMVTQLGKNGKAEVKQGSLTRIEPEGIESRMWEAIETYMARKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEVIVAEGFERIHRTNLVGMGVLPVEFTGGNNRHSYGIDGSEIYDVIGERTPGAVLTLIITGKNGEQVEVPVKCRLDTAEEVTIYEAGGILQRFAQDFLDSNVN
>NZ_CP041614.1|WP_144047390.1|4459119_4460400_-|putative-methylaconitate-Delta-isomerase-PrpF
MTSNKVHLPQIKVPATYMRGGTSKGVFFSLTDLPQVAQVAGAARDALLLRVIGSPDPYGKQTDGMGGATSSTSKTVILSKSTQADHDVDYLFGQVAIDKAFVDWSGNCGNLSAAVGAFAIHAGLVDASRIPENGIAVIRIWQTNISKTIIAHVPIINGEVQETGDFELDGVTFPAAEIGVDFIDPADKPKEGEPGMFPTGNLVDEISLPAGVFNNSPELDNSPEPRNSLEPKKIAATMINAGIPTIFVNAEDIGYRGDELQEAINGDVKALEMFESLRAIGAVKMGLIAHVDEAQSRQHTPKIAFVSPASSYTSSSGKLVEYSHIDFNVRALSMGKLHHAMMGTAAVAIGTAAVIPGTLVNLAANSGTLIKTESQADSVCFGHPSGTLKVGAAAEQVDGQWTVTKVSMSRSARILMEGWVRVPDES
>NZ_CP041614.1|WP_144047389.1|4457998_4458553_-|outer-membrane-beta-barrel-protein
MNKLSIVAASLLTIFASSHVAAANDNTGFYVGGSLGQLKIKAKGSETGVGLGAYGGYNFNEWFGLEANLFVSGDLGDSNEDIGAGTFALTPKFTYQINDTFAVYGKVGIASMAVVSRPDNSRNEDFTGFGWAYGVGVNASVTENLNIRLGYDVVTGELDSEYSNSFQNVDTDISNFALGMHYQF
>NZ_CP041614.1|WP_144047388.1|4457653_4457845_-|hypothetical-protein
MRGISYANITLLPFVGNEHKTMPKGLMFNTKDYLQLVDDTGRIVRADKRGSMSEESANLIKTL
>NZ_CP041614.1|WP_144047387.1|4456797_4457667_+|amino-acid-ABC-transporter-substrate-binding-protein
MIVRINTLFLLIILSSALHAEVVVTYPKARSAQDVRSNDLIELLTLSLEVTKETHGAYKLQASGDFMNEKRQRVELSKGERLNIMWSSTSTALEESLLPIRIPLRKGLLGYRISLINKNNQDNIDRVKTLNDLRGLTIGQGHGWGDSAIYESNGIKVKEADYDSLFKMVVQNRFDLFPRGINEVFDEYRERAVKAPSLAIEENLLIVYLWPYYFFTNKKDWVLADRIETGLKKIISDGTFDKVFLRHHSVSIKKANMSKRRVLRIQNVFLPETVPVDDKSLWFDPFKEF
>NZ_CP041614.1|WP_144047386.1|4455565_4456231_+|hypothetical-protein
MQKKTLPRSIIASVIFSAGLLSLPTHANQGPDRLITAESLQVTENSNPIITDTYRSSFLLNKGQRKVLWNTFKRPVDYDRLAAFVAISYGDLLSVSCKISLFNGNNTRPFKVIDCRRSQQWNPTTPNVPVFNTSLRAKIELYNADFTKPSKRVSLILTPNFANQNDIDQDGLPAWFERFHNLSDNDAVDAASDIDQDSYTALEEYLGGSNPLDTNSVPVNP
>NZ_CP041614.1|WP_144047396.1|4468796_4470389_-|ABC-F-family-ATPase
MITTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGSDLEPTAGNVSLDINERIGKLSQNQFGYEEFSVIDTVIMGHEQLWEVKKERDRIYSLPEMTEEDGIKVADLEMEFAEMDGYTAESRAGELLMGVGIPVDQHFGLMSAIAPGFKLRILLAQALFSDPDVLLLDEPTNNLDIDTIRWLQEMLNQRNSTMIIISHDRYFLNSVCTHMADLDYGELRIFPGNYDEYMMAAQQSRERLMSDNAKKKAQIAELQGFVARFSANASKAKQATSRAKLIDKIKIDEVKASSRVNPFIRFEQEKKLFRNALIVEELSKGFDEPLFNKLNLMVEVGERIAILGENGIGKTTLLRTLTHDIPQDSGTIQWSENSAIGYYAQDHESDFENDMTLFEWMSQWRKPEDDDQSVRGYLGRMLFSSDDIKKSVKVLSGGEKGRMLFGKLIMQKPNILVMDEPTNHMDMESIESLNNALEIYQGTLIFVSHDRAFVSSVANRIIEMTKDGINDFKGTYDEFLRSKGVDA
>NZ_CP041614.1|WP_144047397.1|4470587_4472861_-|heavy-metal-translocating-P-type-ATPase
MIMKNINSMTLYVPQMNCASCVAKIEGAFEKLSLPDVSARVNLADKQVQIQGDISSELAIVTVASVGYDSELVLDAKLASEKKIQAERVEYRTRIIQSMLGLGLGVPMMLWGLLGGEMMVNNPSQQLAWGVMGIITFILLVTTGGHFYKGMWRALKARSANMDTLIVLGTTTAWAYSMLVVIMPSWFPAETRHVYFEASVMILGLINLGHALELRAKGKTSEAVQRLIGLQSTTAIRLTDSGDEEVEIAQIQIGDQLRLQPGSRVALDGEVLSGESNLNESMLTGEPIPVSKNIGDTLSAGTVNGNGSIIYRVTAGLTDTRLSKIIDLVQQAQTSKMPIGRLTDKISAYFVPVVVIIALVASVVWYLAGPAPQISHALVVLTSVLIIACPCALGLATPMSIMVSVGRAAQMGVLIKNGEALQTASKVTCVVLDKTGTITSGKPSVTDIRLLDGGSDGESGGESSASEQLLFLVASLEQHSEHPLAQAMLDEAKTRELSLVEPERFNNIQGKGIVGIVSGVELAIGNMSLMVMEGISGVDALQDEVQTLAQLGKTPVYVAQGGRLVGVIAISDPVKPDAKEAIAALKRAGKRVILLSGDKQETVQAVADEVGIDEVIAGVLPEQKQAKIIELKESGEVVAMVGDGINDAPALMSADVGIAMGDGTEVAIESADLTLLTGRLSVLADTFALANASMRNIKQNLFGAFIYNSLGIPVAAGVLFPLTGILLSPVIAGAAMALSSLTVVTNANRLRHVKLNK
>NZ_CP041614.1|WP_144049053.1|4473077_4473461_+|MerR-family-DNA-binding-protein
MKIGEVAKKTGLSVKSIRYYHDIGLICAARGENGYREYDKPQIDSLNFISHSRDLGFSLDDCRSLLDLKLNQDRDAEDVKRLAKTHLQMVSNRITKLKELESQLKHLIKDCRGGHQPDCAILSGLSE
>NZ_CP041614.1|WP_144047398.1|4473543_4475616_-|prolyl-oligopeptidase-family-serine-peptidase
MITYLWKQEPTVRPHFYFIPLLSLLLLCFLAACGKPDHVEKVDKRSGLKIAAYGSWLSPITAEDVYGLSDDFGELQSVNGALYFVQSDSSAQGKIGIKRLETGSKLSDAVSSAFDVRSTVHEYGGSPFLAIGQSIFASKAEDQLLYRFAPNQEPVPLTMPGTRHADCVRYSKGSRLICVREDHRNSGEPTSSLVALNLNFAGEGEILIDGDDFYSSPRVSPDMKTLAWIAWQHPNMPWDNTELWIGELAPKGGVHNPKRLLSDKNGSITQVSFSPSGQLYFVADFDNWWNLYRISSEGELEQVLDKDAEFAVPDWKLGNHNYAFESENTIIASYSDKGQASLIRIFLDTGITEPIAVDFGEISQVVKGEDGIYFVGAKVTPEKGIYKVKGRGVALIYSPELATVDPNYISRAVSVSLKSSDGVTIYGYFYGARNPDFIGLRDSRPPLLVMLHGGPTAKASLAFRRDIQFWTSRGFAVLDLNYRGSSGFGRAYRQSLYGKWGIADVEDAVRAAGYLVNKGWVDGTKLAIRGSSAGGLTVFSALVFYDTFKAGVSYAGISDMEVLSRDAHKFESSYLELLVGKNSAENNVYRERSPLHHLDRLNEPLLLIQGGDDPVVLAKQSTEVFNKLKARGVPVAYLEFEGEGHNLRDPVNQMTAIEAELYFYGKVFGFTPAGDVPTLKIENVHRLKKH
>NZ_CP041614.1|WP_144047399.1|4476087_4476846_-|SDR-family-NAD(P)-dependent-oxidoreductase
MDLKDKVVVITGGAGGLGLAMAVDLAEAGAKLALIDVDQEKLERACADIGDRAEVQGYAFDITSEEDVVAGFGFILEDFGQVNVLINNAGILFDGMLVKAKEGKVTDRMSYEQFQAVINVNLTGSFLCGREAAVAMIESKQEGVIINISSLAKAGNMGQTNYSASKAGVAAMSVGWAKELARYNIRSAAVAPGVIETEMTAAMKPEALARMEKMVPVGRLGQPSEISSTVKFIIENDYVNGRVFEIDGGIRI
>NZ_CP041614.1|WP_144047400.1|4476850_4477771_-|3-hydroxyisobutyrate-dehydrogenase
MTSIAFIGLGHMGAPMAANLVKSGVMVKVFDLVPEAMKSLTDVGALAAKSACGAASGADVVITMLPAGKHVRSLYLGEGSSDKGLLDVVAEGTLLIDCSTIDAQSAKHVAEVAASKGFEFVDAPVSGGTAGAAAGTLTFICGGSDSGFEQASKVLSHMGANILHAGGPGAGQVAKICNNMLLSVLMIATSESLQMGIDHGLDPKVLSEIMKVSSGGNWTLDKYNPCPGVMESVPSSNDYQGGFMVDLMVKDLGLSQEAALLTNSCTPMGALARSLYVNHARQGNGTRDFSSIFEQFSHLQQIKSKG
>NZ_CP041614.1|WP_144047401.1|4477824_4478964_-|enoyl-CoA-hydratase/isomerase-family-protein
MTNSTNSVVFQTLGTASGKQIGVMTLNMEQALNSINLEMVQLMFAQLTRWQDDDAIAMVMLDGAGEKAFCAGGDVRAIYYASVATPGELTEQATEFFEQEYRLDYLIDTYAKPILVWGTGIVMGGGLGLMMGASHRVVTERSRIAMPEVTIGLYPDVGGSYFLNRMPGKLGLFLGLTAYNMNAADAKYVGIANHYIQDDDKQPLLDSLACLNWGDDTEVNHSLLSDELNRTGAKASAGLAKGQLETHKDDIDALMSGSLNEIMARVGELKLKESWLARPIKTMLSGSPISLQLIYRQAHLGIDFSLAEIFRFELGLSVNCCALGDFSEGVRALLIDKDRNPQWKFNQVADVPTSLIEQMLSSPWSLASHPLAQLEEPLL
>NZ_CP041614.1|WP_144047402.1|4479761_4480919_-|acyl-CoA-dehydrogenase
MDFNLSDDQRQFADLAQQFSQDELAPFAAQWDREHHFPKDVIQRAGELGFCSLYSPESEGGMGLSRLDSSIIFEQLSMGCTSTTAMLTIHNMATWMVTSFGTETLRKEWSESLTTGQKLASYCLTEAGAGSDAASLKTKAVREGDEYVISGTKMFISGAGATELLVVMCRTGQDGPKGISAIVIPADAKGVTYGKAEDKMGWNAQPTREITFSQVRVPVANLLGEEGQGFTFAMKGLDGGRINIATCSVGTAQAALERATQYMKERKQFGKPIATFQALQFKLADMATELVAARQLVRLAAFKLDCGDPEASAYCAMAKRFATDIGFQVCDAALQLHGGYGYIREYPLERHVRDVRVHQILEGTNEIMRLIIARRLLDESAGQIL
>NZ_CP041614.1|WP_144047403.1|4481069_4482575_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTTQVKHYIDGQFIDGIGKQQISVTNPANNETIAMINAATVQEVETAIASAKSAFKTWKEVPVSERARVMFRYQHLLKEHHDELATILAQETGKTFDDAKGDVWRGIEVAEHACNIATLIMGETVENVARSIDTYSYSQPLGVCAGITPFNFPAMIPLWMFPLSIACGNTFVLKPSEQDPMTPQRLVELFEEAGAPKGVLQLVHGDKTAVDVLLNHQDVKAISFVGSVGVGQYIYKTGTDNLKRVQAFAGAKNHCVVMPDANKQQVINNLVGASVGAAGQRCMALSVAIFVGAAKEWIPELKEAIAKVKPGLWDDKGAGYGPLISPAAKARVLSLIAQGKAEGATCLLDGSEFTVPGYESGNWVGPTVFSNVTTEMTIYKEEIFGPVLCCMESDTLEEAIEIVNNSPYGNGTSIFTASGAVARKYQHEIEVGQVGINVPIPVPLPFFSFTGWKGSFYGDQHAYGKQAVRFYTETKTITARWFESQITDAEHAAPNMTIELK
>NZ_CP041614.1|WP_144047404.1|4482805_4483996_-|acetyl-CoA-C-acyltransferase
MSTEQLSQEIVIVAAKRTPMGGFQGSLSTVPSPKLAATAIKSLIEQTGVAADAVDEVLMGCVLPAGLGQAPARQATLGAGLPLSVGATTVNKVCGSGMKTVMLAHDLIKAGSADIVIAGGMESMSLAPYLLDKARGGMRMGHGKIMDHMFLDGLEDAYTGGAMGTFAQNTADEFKLTREQMDAFSLSSLDKANKAIESGAFKQEIAPVTVSNRRGDTLVDTDEQPGNARPDKIPTLRPAFAKDGTITAANSSSISDGAAALMLMTAKQANIQGLPILATIKGHATHAQEPSLFTTAPVGAMNKLFDKVNWSKDDVDLFEINEAFAMVTMLAISELSLDESKVNVNGGACALGHPIGCSGSRLLVTLIHALKARGLKRGVASLCIGGGEATAMAIEV

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Crispr_ID: NZ_CP041614_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_13

4503215-4503328

Orphan

Consensus_repeat	Method
TAAGAGTCATGCTGACGAATATCTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_13

>merge|NZ_CP041614|13|4503215-4503328|CRISPRCasFinder
TAAGAGTCATGCTGACGAATATCTGCTGAATAGAGGCGCTTTATGCGCCGCTAAGCTCACTATGATTTTCAGTGGCTTGTTTAGTATTAAGAGTCATGCTGACGAATATCTGCT

>NZ_CP041614|13|13|4503215-4503328|CRISPRCasFinder
TAAGAGTCATGCTGACGAATATCTGCT	GAATAGAGGCGCTTTATGCGCCGCTAAGCTCACTATGATTTTCAGTGGCTTGTTTAGTAT
TAAGAGTCATGCTGACGAATATCTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144047420.1\|4503378_4503618_+\|DUF3624-family-protein	unknown	unknown	gnl\|CDD\|372017
NZ_CP041614.1\|WP_144047414.1\|4497180_4499391_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225990
NZ_CP041614.1\|WP_144047413.1\|4494708_4495476_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187608
NZ_CP041614.1\|WP_144047412.1\|4494299_4494632_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047421.1\|4503628_4505005_-\|protein-kinase	unknown	unknown	gnl\|CDD\|275380
NZ_CP041614.1\|WP_144047427.1\|4514027_4514654_-\|DUF4123-domain-containing-protein	unknown	unknown	gnl\|CDD\|379225
NZ_CP041614.1\|WP_144047422.1\|4505087_4505519_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP041614.1\|WP_144047428.1\|4514632_4516720_-\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_CP041614.1\|WP_144049055.1\|4496556_4497048_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|377593
NZ_CP041614.1\|WP_144047411.1\|4493708_4494116_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047415.1\|4499586_4499982_-\|chaperone-for-general-secretion-pathway-YbaY	unknown	unknown	gnl\|CDD\|378225
NZ_CP041614.1\|WP_144045111.1\|4491863_4493384_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP041614.1\|WP_144047426.1\|4511463_4514013_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP041614.1\|WP_144047417.1\|4501108_4502014_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187611
NZ_CP041614.1\|WP_144049056.1\|4509816_4510080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047423.1\|4505770_4508047_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP041614.1\|WP_144049054.1\|4495602_4496247_-\|outer-membrane-protein-OmpW	unknown	unknown	gnl\|CDD\|182867
NZ_CP041614.1\|WP_144047425.1\|4510413_4511454_+\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|335469
NZ_CP041614.1\|WP_144047424.1\|4508222_4508963_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198305
NZ_CP041614.1\|WP_144047416.1\|4500046_4500913_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|182519

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144047420.1\|4503378_4503618_+\|DUF3624-family-protein	gnl\|CDD\|372017	pfam12292, DUF3624, Protein of unknown function (DUF3624). This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.	4.96791e-32
NZ_CP041614.1\|WP_144047414.1\|4497180_4499391_-\|hypothetical-protein	gnl\|CDD\|225990	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism].	0.00137754
NZ_CP041614.1\|WP_144047413.1\|4494708_4495476_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187608	cd05350, SDR_c6, classical (c) SDR, subgroup 6. These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.59676e-40
NZ_CP041614.1\|WP_144047421.1\|4503628_4505005_-\|protein-kinase	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	3.33304e-25
NZ_CP041614.1\|WP_144047427.1\|4514027_4514654_-\|DUF4123-domain-containing-protein	gnl\|CDD\|379225	pfam13503, DUF4123, Domain of unknown function (DUF4123). This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.	6.03203e-19
NZ_CP041614.1\|WP_144047422.1\|4505087_4505519_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.68928e-12
NZ_CP041614.1\|WP_144047428.1\|4514632_4516720_-\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	0
NZ_CP041614.1\|WP_144049055.1\|4496556_4497048_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|377593	pfam06042, NTP_transf_6, Nucleotidyltransferase. This family consists of several hypothetical bacterial proteins of unknown function. This family was recently identified as belonging to the nucleotidyltransferase superfamily.	8.57248e-73
NZ_CP041614.1\|WP_144047415.1\|4499586_4499982_-\|chaperone-for-general-secretion-pathway-YbaY	gnl\|CDD\|378225	pfam09619, YscW, Type III secretion system lipoprotein chaperone (YscW). This entry is encoded within type III secretion operons. The protein has been characterized as a chaperone for the outer membrane pore component YscC. YscW is a lipoprotein which is itself localized to the outer membrane and, it is believed, facilitates the oligomerization and localization of YscC.	5.04845e-12
NZ_CP041614.1\|WP_144045111.1\|4491863_4493384_+\|ISNCY-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.27859e-08
NZ_CP041614.1\|WP_144047426.1\|4511463_4514013_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	4.73547e-08
NZ_CP041614.1\|WP_144047417.1\|4501108_4502014_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187611	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs. Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	7.73395e-59
NZ_CP041614.1\|WP_144047423.1\|4505770_4508047_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	2.83101e-81
NZ_CP041614.1\|WP_144049054.1\|4495602_4496247_-\|outer-membrane-protein-OmpW	gnl\|CDD\|182867	PRK10959, PRK10959, outer membrane protein W; Provisional.	8.59783e-142
NZ_CP041614.1\|WP_144047425.1\|4510413_4511454_+\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	3.83285e-31
NZ_CP041614.1\|WP_144047424.1\|4508222_4508963_+\|glutathione-S-transferase	gnl\|CDD\|198305	cd03196, GST_C_5, C-terminal, alpha helical domain of an unknown subfamily 5 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	1.16013e-56
NZ_CP041614.1\|WP_144047416.1\|4500046_4500913_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|182519	PRK10526, PRK10526, acyl-CoA thioesterase II; Provisional.	4.76159e-165

>NZ_CP041614.1|WP_144047417.1|4501108_4502014_-|SDR-family-NAD(P)-dependent-oxidoreductase
MRFDNRVAVITGAGSGLGRAYALALAERGAKVALIDSGIDKTGVSSGLESSHQAVLALGEQSMLFNLDVSDFAGVKQAVAEIISHWGRIDILVNNAGIHAPCDFDNLTVDMWQHQLNTDLNGSFYMTKAIWPQMKRQGYGRVVMISAASGLYGDMHETSYSASKMGLIGLVNSLYLEGVDHNIKVNTLTPHALTPMTANRLASSVKPLFSKSSITASMMFLCGAEAPTGQHLLTAAGSVSHGQFTEFKSCYLPAEACKPEAIQDSWQQIYQAQPVNLHRSGEDQILAWAKRGAGERHITIE
>NZ_CP041614.1|WP_144047416.1|4500046_4500913_-|acyl-CoA-thioesterase-II
MSQVLNDLLSLLSLERIEEGLFRGQSQDLGFGHVFGGQVMGQALSAAKQTVSASRQVHSLHSYFLRAGDEKLPIVYDVEVMRDGGSFSARRVKAIQKGRPIFYMTCSFQEFEQGLDHQDKMPNVPGPEGLLNQQELAMALQDKVPPKMLEKFMADAPIEMRLVDACNPMVSTITEPKRYVWIRANGQVPTDFSVNEYLLAYASDFNFLVTAAQPHGVSFLTPGMRMATIDHSMWFHRPLDLNDWLLYSIESPSASGGRGFVKGQFFNQKGELVASATQEGLMRMVSPK
>NZ_CP041614.1|WP_144047415.1|4499586_4499982_-|chaperone-for-general-secretion-pathway-YbaY
MLVMLKRTIILLVCVLSLSACVTVEAEPPIIINGAAGYLEKINLPQGSKITIAIIDMDTPGAIVAQKSFDIARAPVPFKFILPAETVEENINYGVVAMILYQNQVIFQTYDRFPIISNGKYTTEVLMKAVR
>NZ_CP041614.1|WP_144047414.1|4497180_4499391_-|hypothetical-protein
MRFIGSHQIIKNFELMSSPEPDNSLELNNSSERSNCNEPNSQTGLLCGGKSKATHQDIQALLLLVSGIILFLIAGCTDEKDISTNDAKIAKVEEVQIPAKIATFNQFWQLTDNGIHWSVNSPHQDQLEMSGLQVSAVIDYGLGTDGNLVLEKTLVWPMLRTLPNDTHASLIRNFSSQVAPDIYIDEERVTHGGLKDVMFDGQLTLVQMLSTDLKLTRTISVHPSEPALIERWQFENQGSDVLGLRLTPLRELETTLASQGEYGSYQISVDADELNRRLSAGDIVEHFIVYSAKLADEMIYIEPARALEQRALQVEAWRSALKLETPDPKINQMFEFAKFRATESIFSTRGGLAHGPGGTRYYAAIWANDQAEYVNPFFPYLGDKRGVESALNSFSWFARYMNSDYKPLPSSIIAEGKGFWNGAGDRGDCAMIAYGASDFSLSLGDATAAKQLMPLIDWCLEYNRRQRIESGVIASDSDELEGRFPAGNANLSTNVLAYGGLIRAARLKSALGESSEGLLEEAKQLKSAIIKYFSAEISGYQTYRYFEGNNKLRAWIALPLAFGFDANKQGTIDALLSDKLWTIDGLLTEEGDKTFWDRSTLYGFRALMKVGELERVWPYFEHYSYKRLTGEHVPYAVEAWPEGEQRHLSAESGLYARVVVEGLFGIEPMGFNEFLLAPRLPEHWDKMALRKIYAFNGPFDIEVHRQEKAFTVDILRNGNLEQSFVWDGIAPFTVKL
>NZ_CP041614.1|WP_144049055.1|4496556_4497048_-|nucleotidyltransferase-family-protein
MEAIEFAIKLNLPQWLLAAGFVRDLVWDRLHGASSHLLNDIDLIYFDADDLSESREKAYEKQLESWAPHLPWSVKNQARMHIRNCDAPYTSCEHAMSFWPECETAIGIHVSRQDHRFDFVAPFGFESLFDLKLTHNPKRELSLFNARKDQKAWLTRYPKLQLA
>NZ_CP041614.1|WP_144049054.1|4495602_4496247_-|outer-membrane-protein-OmpW
MKKNIISGLIAAALLATGFTASVSAHQAGDIIIRAGVAVVAPNDSSEQVADFGEFGVSSNTQLGLNFGYMLTDNIGIELLAATPFSHDISLPGEGKIAETKQLPPTLVVQYYFGNAESKLRPYIGGGVNFTNFYDNEFTNDLGGALSDLSMSSSWGLAAQVGIDYQVNKNWLVNASVWYAQISTDVKFNLGGSPTTIETDIDPWVYMVSVGYTF
>NZ_CP041614.1|WP_144047413.1|4494708_4495476_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTKATAIIVGANSLLSREIAKQLASQGVELALLAQDPDSLQEFVDSLPTQTHVFPLEITSPQKIIATLEQVWEKLGGAHLVIVNTGLNSYDPQLPWLPEQDIITVNVQGYAAICNTAFKLFRDQGYGQLAAINSIAGLRGGPSVAYHASKAFASNYLDGLSMHAQRLKLPITITDIQLGLLDKAAMQQSRLWLSPPDEVARQIIKAMQKAKRKVYVTKRWLLVAWLTKLLPEFIYNTRHWRTKAERLAAKAEGKK
>NZ_CP041614.1|WP_144047412.1|4494299_4494632_-|hypothetical-protein
MKREVYCQLTSCKLSFSLKRFAFTSILNNLNNLNNNAYVFALGFDVPKEDSPITEGLKRLQQLQSLTVMEKANAKQTTSYEPPKLPLENSLSQDDFLMACTASLKQENKL
>NZ_CP041614.1|WP_144047411.1|4493708_4494116_-|hypothetical-protein
MTAQAIEQDMMFWQRLSVNTHILSSKVASAGAMSVNMKLGEIIINQLALEQEAVAIPEIWQLPMSPQVLSLNNAKLGEWHYFTKITEATQVVDSNTDIAIQAVEFLMLPPRYSQPLRSDSLGLKAPERLPNQPID
>NZ_CP041614.1|WP_144045111.1|4491863_4493384_+|ISNCY-family-transposase
MIIMDSQSQLTVDVIAKVAQGKISILNASKLLNKSRRTIERYLSRYKKDGIRFVVHGNTGRAPANKIPGTLKRQVQSLIKEKYYDFNLQHLADMLEVVESIQVKRETLRSWAHDIHHVKRAKHRRSKVRRRRERMESAGLMLQMDGSPHLWFGDNKSCLITIIDDATSDIHAEFFPSETTVGCMKVMKAYIKKRGLFKTLYVDRAGIFGGPKRCNFSQMQRACKELGIEIIFANSPQGKGRVERAFDTFQDRLVPELRLAEIADMDSANDYLQNVFIPDYWLPKLTVNAKNIRSEFKPVPKYIDLDAICIQKEYRKIRRDHTFSFSNTMYTIDSPLRHSIVNQKVEIRKQLDGDFAAYFADRKLAISEIKEPSKLTEYGEEVQRKLDAIKLAEALGNLSEAARISGCSRESIYNNRRLLETQGPLALKRMYGIPRHTNRIDQDTEDKIITLTLEKPHLTQIHISGEMMKRYNISISHSTIRNIWVREKLNTKVLRIERAEALEKTP
>NZ_CP041614.1|WP_144047420.1|4503378_4503618_+|DUF3624-family-protein
MTCNSCESSIFRQKLGRCKACMWQLAILSVIAWPLWWFLYSERVSHVESIALLFFCISFTGLLLLHLLVLGYRSLTHKT
>NZ_CP041614.1|WP_144047421.1|4503628_4505005_-|protein-kinase
MQTLAALKNGQLTLTIRLQLAENLTEFPKEIFDLADTLEVLDLSNNCLSSLPDDLGRLTQLRILFLSNNQFETLPKVLGDCPKLEMIGFKANKIRTVDEDALPVQTRWLILTDNKIETLPNSMGLLYRLQKLALAGNRLSSLPESMANCKNLELVRLSANQLTHLPDWLLQLPKLAWLAFDGNKLSSMDKISLAVPEMLTVKMTDIDLAEQLGEGASGVIYKGKWNRQPVRLLGTPELIAIKLFKGEVTSDGYPADELACCLQAGEHLNLIKVISQINEKEHLGLVMELIPPSFFNLGLPPSLVTCTRDTFESGTQFSVSQIAKVVLQMAATMTHLHSQAVSHGDLYAHNTMINADAEMLFGDFGASSDLSVLPQLQREAMQAIEVRAFGCLVDDLLSVNAKHLSDDAEISGKQALLSVLLQMRDSCLHDEFALRPRFFEISDKLQSAVLELVSEALH
>NZ_CP041614.1|WP_144047422.1|4505087_4505519_-|GNAT-family-N-acetyltransferase
MNHEIHFQETLTQDEQQILWDGIEKAISAKVGKTGRYELCFLLRDEQGEILGGVQGNCDNWGWLWIDSLWVSESLRGQGFGKKLLETIEDKAIALECTHSHLTSFTFQAVDFYKSLGYSVFGELADYPKGHSRCWLKKELVDR
>NZ_CP041614.1|WP_144047423.1|4505770_4508047_+|U32-family-peptidase
MSRKIELLAPGGDVEAIKAAIVAGANAVYCGLDTFNARNRAANLSFDDLCGILRLAHQYECEVFLTLNVVILEHELPALFKLLNQLVNTSLDGIIVQDLGLFNLVKKHFPTLDIHASTQLTTHNEGQIHFLSRIGASRVNLSREMNLGEIKSLTALAHEHDMLTEVFVHGSLCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEETAAGNKYPLNLKDNSAYFDLPELVDAQVDSLKIEGRIKGAHYVYTVVDSWRKQINQFVDTGKLLEDDTNLYKVFNRDFTNSFLKGNLTKDMFIDNPRDNSVNHAVEKQNAISVVQIQAVKQTLKTDKNELGASLEDKIKYLNIDKMLLNLSFTGQLDQPFSIQARVETISNQVEQDNQIQTFSIQSDSVLRASDKSPLDAEALEKRFRSFNNADYVIQDYDFCELSTGLSIPFKELTALKNKLAFLLNNSVDVIPPVELPKLQQHAKVNEKPGLSLLICDEKDAHLGDVTDADIYFKLPESFKKNCDKYIELLQRNPRFIPWFPAVLIGKDYIEAVRILEEVKPARIVSNNTGVAYKAFEMGIEWIAGPFLNTTNSYALSTLQEDLNCAGAFISNEINRMQIRNLKRPAGFKLLYSIYHPILMMTSRQCFFQQTVGCNKPSIEDGCMLKCEKATTITNVKGISFAVDKQKGGYPSIYNDEQFLNLDVINDYSSLFDEFFIDLTDIGSGSKAKLDKVQLIEHFESLLLGSEDAKVQLDTMVTVSTHAQYRQGL
>NZ_CP041614.1|WP_144047424.1|4508222_4508963_+|glutathione-S-transferase
MSQLPLPTLYSLQHCPYAMRARLGLLLAKQKVMLKAVVTKNKSQEMLAFSPKGTVPVLVLEDVIEDRGTSVSGIEVKVKVEAESANKRKPPRIIDESVDIMLWALNINDPDDLLLSQTPEALPIMLEFISYNDKVFKPLLEQYKDAKRYHKDTEADLRTECESFIQALELRLSQHQYLMGDNLSLLDFALLPFVRQFARVDRHWYLQSPYPLLRQWLKDHLNRPLFSRMMKKFPLYSETGEAYPFG
>NZ_CP041614.1|WP_144049056.1|4509816_4510080_-|hypothetical-protein
MLSFSQLASAGIVNPDCTPEKAAKSAVANATVGVKGRCSPAETAKDATTKAVNEALPDEGVAGKAVDMAKPKKHDSVMKKATKAVID
>NZ_CP041614.1|WP_144047425.1|4510413_4511454_+|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MRFYRLNSLTLGLMTSLFLTACGAGDLNPPLITSSSVPDDDIKAISAKIEASYPKMDKQLKLQILDVAVKSMEDMVWIEGGSFIMGDIRTPCDIIDKGRMDWTPEATCYSNFISRKNGAIYQHKVTLDSYSLAKYETTHYGADAYRLAHGIELARAEARVLYEGLTQRIKNDPSPTKRWQEAKNYCLWLGDLTGYKFDLPTEAQWEYAARNRGKNIYYATNNGYVQRVNGTYYAPELGRHVDILPEEVNYGSGFDEVGSWPANPLGIHDLSGNMEEWVNDWFSADYYQHSPEDNPQGPETGTDKVVRGGQGLVVTTRAFSPIDPIDSKYTLTGFRCAVQQSTPVIE
>NZ_CP041614.1|WP_144047426.1|4511463_4514013_-|LysM-peptidoglycan-binding-domain-containing-protein
MTTTYTVKQGDTLLGIAIEQNIAFPELLALNPQYQLNPDVIYPGELVTLPSTFEPAEPELTIEPVEPVRPVEPGCVMGKPACKGMDACDVLFLTGGEPDGYYVLDEHAQTLLKQEISTMDKLIEDYRAVLDKAPDNKEASEADVEQHLSRKQAWVAKAVHAGAIGVESSKGATQSSAIQPQNKQYLVAKITELRRTRQLLADYVPFFSESSMATLRSRRLKSIDTEIEKLIAQVPSKPSPESSAKQGVNFDNLGNVSGQLSSRPSQRGIIEIMLVSENRLVYIRAEFLERERRFWRTNPTQTRLRQLIANRDVAGIQQAMFEDIREGLVKDKSNGMLGKLEGNIKKWAHPGWKWKEWKGTKKLWVNEDGDTRFAVSAEAQLLRFSAQASVKTSFEPSEGKVDIGIGGDATFSLAEGKVEGKYFMPYEKGYALTLAYLDSNKQTALYSFGCFRASVGVTLSCFAGVIVNGEAKLSNQEQASGAGILLSANTQLAPTNATGGLGVKAEGFAGVQAGGQVAGALEWQSPDDIATTNFSALAEIKAEGNISFGAGIGGEFQLALESGQFYFYCSGRLVWGPGGSGGFGTTVDFEKLWELVKVIWGALEVVDYHVLDNIDPLAYEYLQRASYYAFAVPQKLLDETNALVKNPKFYLQQAVMSGATAIDGWWRERVRYWESQQYQEAEALRVAERIINQEHYAGIPPRLLPPETIGMLLNTLVTTFWFNWEQQQEMAIYLLLSTSIKSWRKFEESLGCMNVRGTKVSGDKALFANLNRINAILDRHQQHDFNVWLDALAALRCANVQASSAPQLPKVYQVRSRSEMRDRNSPNKKQIGQQIARLHGYQPGDTYYV
>NZ_CP041614.1|WP_144047427.1|4514027_4514654_-|DUF4123-domain-containing-protein
MQHTLDLVQADITQSAARIDSAQYAIIEPLLCPDITQWLYEEGTSARSIPLFSDTPYQSLAEEGPLLIELAERTQLISRIKSASQRFSIGCFIQSGLSFEALADLLAECLTINSGQNLALFRFYEPRMLLPLMMVMSTTDKQHFFQGINSFIWFDKQWLSASVANASSPSQHSDVIRWTMTAQQGEAMQQVLTQWQQSTAHSPSVHSG
>NZ_CP041614.1|WP_144047428.1|4514632_4516720_-|type-VI-secretion-system-tip-protein-VgrG
MIAVGNGLRYHFSAEGVSDDSFEVLAFDFKEGLSSPFEVKLTLLSRLDDLTPESIVDQTGLLTWYQSGELQRQVHGIVSQFSKADTGNHHTQYHITLVPALSRLKLRQNSRIFQQKSVLSIIATLLTEMGIKDYAFSCDARLESQVREYCVQYRESDFDFISRLAAEVGLFYYFQHSEKIHTLVFSDSTTKQPHLDAPFPYNAVNGGAAEVPFVSSFSYQHQIKPASVTLKDNSFKKPQYSFLQTNTGKPLDFQRLDYEHFDYPGRYKDDESGIPFTQVRQEYLRRDAQLATGKSNLMQAVSGSKFDLMEHGDVALNRDWLMVTVTHKGEQGAAAEEANTQAVTTYGNTFTAIPGNAPWQAEPNAKPLVTGPQGATVVGPKDEEIFCDEFGRVKVQFPWDRYGVSDDKSSCWVRVSQGWAGGQYGMMAIPRIGHEVIVSFLEGDPDQPIITGRTFHSANQVPYPLPANKTRTVLKTQTHKGEGSNELRFEDEADKEEIYLHAQKDMNTLVENDQSTNIKHDAHLDIENERFTRIKANDHLTVEGERRTVVKQDVSLNIDGSQQQKVGKKSILEAGTEVHLKAGTKIVIEAGAELTLKVGGSFLKVDPAGVHLVGPAVNLNSGGSAGSGSGYAGQLAALPGYVDAVILPESDELTLAAASMESVTVLDYPAILQKGALVTELCHCNGEQTCSIHST

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Crispr_ID: NZ_CP041614_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_14

4839597-4839708

Orphan

Consensus_repeat	Method
ACGTCAGCTCTTAAGAAAGATGATGAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_14

>merge|NZ_CP041614|14|4839597-4839708|CRISPRCasFinder
ACGTCAGCTCTTAAGAAAGATGATGAAATCGGAATCTACAAGTCTCAAAAATTAGAACTAACGATGCCTGCAATATCAATCCACGTCAGCACTTAAGAAAGATGATGAAATC

>NZ_CP041614|14|14|4839597-4839708|CRISPRCasFinder
ACGTCAGCTCTTAAGAAAGATGATGAAATC	GGAATCTACAAGTCTCAAAAATTAGAACTAACGATGCCTGCAATATCAATCC
ACGTCAGCACTTAAGAAAGATGATGAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144047626.1\|4833313_4834138_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047641.1\|4846686_4847382_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NZ_CP041614.1\|WP_144049075.1\|4827697_4829128_-\|BCCT-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP041614.1\|WP_144047624.1\|4830061_4831567_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NZ_CP041614.1\|WP_144047630.1\|4837467_4838040_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP041614.1\|WP_144047635.1\|4841152_4841470_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047623.1\|4829305_4829674_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP041614.1\|WP_144047639.1\|4843205_4844309_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047625.1\|4831594_4833226_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NZ_CP041614.1\|WP_144047642.1\|4847511_4848330_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP041614.1\|WP_144047636.1\|4841672_4842002_+\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_CP041614.1\|WP_144047637.1\|4842070_4842631_+\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
NZ_CP041614.1\|WP_144047638.1\|4842673_4843096_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP041614.1\|WP_144047631.1\|4838251_4838668_-\|PACE-efflux-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP041614.1\|WP_144047629.1\|4836472_4837315_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NZ_CP041614.1\|WP_144047640.1\|4845612_4846650_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|225364
NZ_CP041614.1\|WP_144047628.1\|4835644_4836277_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP041614.1\|WP_144047634.1\|4840398_4840959_-\|DUF4136-domain-containing-protein	unknown	unknown	gnl\|CDD\|379281
NZ_CP041614.1\|WP_144047627.1\|4834262_4835273_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP041614.1\|WP_144047643.1\|4848389_4848938_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144047641.1\|4846686_4847382_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	7.88676e-133
NZ_CP041614.1\|WP_144049075.1\|4827697_4829128_-\|BCCT-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	1.13636e-122
NZ_CP041614.1\|WP_144047624.1\|4830061_4831567_+\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	2.66203e-142
NZ_CP041614.1\|WP_144047630.1\|4837467_4838040_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	3.60223e-34
NZ_CP041614.1\|WP_144047623.1\|4829305_4829674_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	8.67829e-25
NZ_CP041614.1\|WP_144047625.1\|4831594_4833226_+\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	3.66738e-142
NZ_CP041614.1\|WP_144047642.1\|4847511_4848330_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.37195e-107
NZ_CP041614.1\|WP_144047636.1\|4841672_4842002_+\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	1.28747e-58
NZ_CP041614.1\|WP_144047637.1\|4842070_4842631_+\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	6.87787e-82
NZ_CP041614.1\|WP_144047638.1\|4842673_4843096_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	2.90537e-69
NZ_CP041614.1\|WP_144047631.1\|4838251_4838668_-\|PACE-efflux-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	9.63359e-29
NZ_CP041614.1\|WP_144047629.1\|4836472_4837315_-\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	2.4865e-88
NZ_CP041614.1\|WP_144047640.1\|4845612_4846650_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP041614.1\|WP_144047628.1\|4835644_4836277_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.33249e-74
NZ_CP041614.1\|WP_144047634.1\|4840398_4840959_-\|DUF4136-domain-containing-protein	gnl\|CDD\|379281	pfam13590, DUF4136, Domain of unknown function (DUF4136). This domain is found in bacterial lipoproteins. The function is not known.	3.00049e-45
NZ_CP041614.1\|WP_144047627.1\|4834262_4835273_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	7.76126e-154
NZ_CP041614.1\|WP_144047643.1\|4848389_4848938_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	6.17197e-11

>NZ_CP041614.1|WP_144047631.1|4838251_4838668_-|PACE-efflux-transporter
MTTKQRVTHAILFELFALVIVVPLAIIITGKDTSELLLVAIGLSVYAVIWNYFYNIWFDKHFGNNRNKRSIGTRIGHALGFEAGIIVATLPIVSWFLGISIFAAFILEFTFLVLFFFYAIAFNYVYDRVCQRLLTTPV
>NZ_CP041614.1|WP_144047630.1|4837467_4838040_-|OmpA-family-protein
MMNKFWLILLCFIGLILSPVAFGWNDSDKDGVPDIKDACPHTPLGVLVDASGCDKSRLFKPVCLITTDDRVYPDTCIQATELALNFEFAKTEILYSQWQILAQIKQFLQLNDVKLCLIGHTDAVGSVEANQLLSEARAKTVKGILVEDYGFDPERFIVRGMGTRSPISTNDTPVGRALNRRVNFLVELDH
>NZ_CP041614.1|WP_144047629.1|4836472_4837315_-|mechanosensitive-ion-channel
MENLEGLIEQAPELIVTYGMKIIFAIVIFVIGKYCAGIAKKLSSKLMTKRKVDPTVISFVSNMAWSLVFVFTIVATLGQIGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVMFRPCRVGDYVEAAGIAGTVNEITIFSTKLLTPDNKLIVAPNSAMMDGTIINYSAMDTRRVDFVIGVSYDADLLETKKVLTRVIENNQYVLKDPAYTIALSELADSSVNFVVRPWVKGSDYWPAYFEILEQIKLALDEANIGIPYPQMDLHLKETPAVASSAAA
>NZ_CP041614.1|WP_144047628.1|4835644_4836277_+|trimeric-intracellular-cation-channel-family-protein
MQEVQFISLLWLIGIIAEAMTGALCAGKKQMDLFGVVIIGCATAIGGGTLRDMMLGNYPLIWVENVHYLIAIAFASLLTVVIAPVMRYLSKLFLAIDALGLAVFSIVGAQKTLLLGFSPLVAIVMGLVTGVFGGVIRDILCNQVPLIFKKELYALVALLTAALYVGLKSYGVSEWVNLAICLPFGFGLRMLAIKFHWGMPKFDYQYGEVH
>NZ_CP041614.1|WP_144047627.1|4834262_4835273_-|low-specificity-L-threonine-aldolase
MIDFRSDTVTKPTTAMREAIANAEVGDDVYGDDPTVNSLEAMAAEMYGFDGALFTSSGTQANLLALMAHCERGDEYICGQQAHNYKFEGGGAAVLGSIQPQPLTNQADGSILLTDIQAAIKPDDVHFAHTQLLSLENTIGGKVLPQAYLAQAQTLAFDNKLKIHLDGARVANAAVAQNIAIGDITQYFDSVSICLSKGLCAPVGSLLLGDERLIHKARRWRKMLGGGMRQAGILAAAAKLAITDQVDRLAIDHDNARYLAECLSELDEFEIEAQQVQTNMLFAEVKQDVDIKHIATELKSLGILISPGSTLRLVTHADISRADIDSFIAKLKGLLA
>NZ_CP041614.1|WP_144047626.1|4833313_4834138_+|hypothetical-protein
MKYSLLSATLLIGFVHTVSAHSTASHSTAANLSTASQSTQIQPALSVEQPDKIQQVCDGISPSQLSATYVIFKGDDSSKLGHELQLTRYQDTVIYQRSPQTFEAWQRNGEYVRYFPMDKRSVSYRTGDLLSLNISYDLEQVFHLVSPEVRSELKQADDIDHTCLTVESFSGEQGGQEVSLEWATSLELPYRLTMGRGEQRLTYQLSEVKSVTPADFKILTAGYKDIDFADVGDSESDPFIAKMITQGFIQHGSSGFYTSDGQQMPGSSHNNHSH
>NZ_CP041614.1|WP_144047625.1|4831594_4833226_+|alkaline-phosphatase
MNKKFLVLSMAAILGLAACGSDGDNGTNGSDGNNGSDGNNGSDGKDWAAVNEWYIDGQRRVTQASELEVNNQAGAAKNIILFVGDGMGVSTVTAARILDGQLKGKTGEENSLSFETLPYLGLAKTYNVDGQTPDSAGTMTAMVTGVKTDVGVLSQAEGVTRGNCASTQGQDLMTSIELASIAGMSTGVISTARITHATPAATYAHSPERNWESDADLTVEAVSNGCKDIAAQLLDYGYGSGINVVMGGGRRAFIPNTMTDPEGKSGKRLDGRDLTSEWTAKYANSAYVADRDSFLALDPATTDHALGLFNSSHMEYDYDRTTDGATGEPSLAEMTAKSIDILKKNDKGFVLIIEAGRIDHAHHAGNAARALHDTIALSEAVRVAMEKTSSKDTLLVVTADHSHVFTIAGYPTRGNPILGLVKGNDSSGISAVTNSTDANGMPYTTVGYTNGRGYAALETGGDERYGLPIAAGRFDLNYVDTQSAGFHQEALVPLESETHAGEDVGIFASGPGAHLVQGTVEQNHIFHVINHAASLVVKAEAAL
>NZ_CP041614.1|WP_144047624.1|4830061_4831567_+|alkaline-phosphatase
MIVINMKKVAALVSCSLVTMAANAAVLPATQTDSLWFKTSAQVVNDKTLQTNKTQAKNVILFVGDGMGISTLTAARIYQGQQLQGNDGGEENFLSFEQFPHTALVKTYNTNQQTPDSAGTMTAMATGVKSKAGVLSVSDASLRANCLSSKGNELITLVDLANAKGLSTGVVSTARITHATPAATYAATPERGWEADSNLPTEAITNECKDIAYQLVMRDEADALSVALGGGRRNFIPDTVTDGENKSGRRSDGVDLTQAWTENFSNAAYVWDKEGFDAIDTSTTDHLLGLFNSSHMEYEADRLDDTAGEPSLTEMTTKSIEILNKNEQGYLLIVESGRIDHAHHAGNAHRALVDTVELSNAVKAAFENTNPDDTLIMVTADHSHVFTIAGYPERGNPILGLVHNVGGDLAIADDGKPYTTLGYTNGPGAIIGQRDDLSSVDTEQKNFMQQSLVPLSSETHAGEDISLHATGPGSHLAQGVIEQNVIFHIINQAQSLGGTKY
>NZ_CP041614.1|WP_144047623.1|4829305_4829674_-|acyl-CoA-thioesterase
MKYYSRRFIKPEHLNPANALFGGQLLSWIDEEAAIFAGCQMHSQSIVTKIISEINFRTPVRQGDVIEFGLEMVSAGSSSITVRCEVRNKVTRLPVVYIDKMVFVNVNEQGLPIPHGIRANAA
>NZ_CP041614.1|WP_144049075.1|4827697_4829128_-|BCCT-transporter
MSRESIGLICCCIAAAAFLIFPETAISLVAGVTGYAIHEFGLAFIIIPSLFVILSLAIALSPWGKIKLGKGAKPEFGFVSWTAMLFAAGMGSGLIFWGVAEPIAHYAHPPAFVSVDNIGKDSALALTYFHWGLHAWSLYAISGLVMAWFAFNKSRPMTISASFTDKPESSRYQVFDLLAVVAVIFGVAGTLANTIALVESGVEQSIGSDIGGLSFRLGLLMAITLAFTLSSTMGLDKGIKRMSLFNLLLVVVMLVAVLALVDPLSIASTVVTSTLTYLQLLPSVSFSIDMDSRQWSEGWSIIYFVWWIAWAPFVGPFIARISRGRTIRQYLLCTILIPTMTSIVWFSTFGGSVFEMSILPDVVQATNTDFTLGLFTFFDNLAFGKILTYSAILLLITFVITSADSAIYVTSMMTGSQAVKSKLMWSLVLVAITAALVLKNNIDLNKQIAIFGALPFTLILLAQAGIMVKELIKHKS
>NZ_CP041614.1|WP_144047634.1|4840398_4840959_-|DUF4136-domain-containing-protein
MKKVIVGLVALALSACSTLKTSSDYDPAANFDDVKTYAWIVKKTKDTTYHLDGLMDQRIRAAVDSQLAAKGITLTDAATADVLVNYLTKVDKKINVDTFNTNYGYNPYYGSRWGYSGSMNTQTTVREYEVGTLILDMVNRESGKLIWRGSVADTIRDQSTPEERVEVVNHAISEMLVNYPPKPEAN
>NZ_CP041614.1|WP_144047635.1|4841152_4841470_+|hypothetical-protein
MFWFIGAFLIASAIFLFAPEQASVQSEKVSARKSQGHISLFILPVIVLAWILFTLLDGHNGSYGTAAIGFVLTSCAIAHSKFHKFIIPCACLTAISLIIGVVLAA
>NZ_CP041614.1|WP_144047636.1|4841672_4842002_+|stress-response-translation-initiation-inhibitor-YciH
MRKDPNVSLVYSTDVGRISPEVELKDIPTGDGIVRIHKDSKGRKGKGVSVIKGLGLNEKELKALSQKLKKQCGCGGTVKEFNIEVQTDNREQLKTLLEKLKYTVKLAGG
>NZ_CP041614.1|WP_144047637.1|4842070_4842631_+|YqgE/AlgH-family-protein
MESLQNHFLIAMPSLKDTFFERSVIYLCEHDEKGAMGIMINRPLGIEVDELLQQMELDEEPELVSSLGARVLIGGPVNPERGFVLHTPQDFWNNSQSLTDELMLTTSRDVLSALGSKDAPKQFIVALGYAGWSRDQLEQELADNTWLSIPASTALLFDVKHEERWQKATESLGFDIWQLSNQSGHA
>NZ_CP041614.1|WP_144047638.1|4842673_4843096_+|Holliday-junction-resolvase-RuvX
MSSITVLGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDVVVVGLPLNMDGTEQEITLRAKKFANRINGRFGVKIATQDERLTTADAKARLFEFGGFKALTKGQVDAMSAVLIIESYFENMYD
>NZ_CP041614.1|WP_144047639.1|4843205_4844309_-|hypothetical-protein
MAVFKRLAIGCLCIWVSFSANAVQVTDELDLGGAVRVNYGWKDYANDSKLEFELFRVDVNYKDDGLFASAQYRWYQDMDVIHHAYAGYSFNEEQSVQIGVTQVPFGLLPYGAHSFWFSANYYLGFEDDYDAGIHWKYDDKNWRFDLAYFFNDEYGDGARYDRYSFDVAITDESPYEESGQLNARIERDITTENTKHKIGASLQYSQLDYLPTTNNQVAGKDTDGYAASFHWQVDWAKWQGQFQYMYYEYDMPDSNRIALSAFAFPFEIASSADVLTLNVSRSIDVDWGPITNLNCYNDFSQVFASGEGLEDSMQNVTGCAITAGKFYSYVDWIAGNNMWFINGPGVGISEGPTEWSSRLNINIGLYF
>NZ_CP041614.1|WP_144047640.1|4845612_4846650_-|PilT/PilU-family-type-4a-pilus-ATPase
MEITELLAFSVKHKASDLHLSAGVSPMIRVDGEVRKINLPALDHQGVHGLVYDIMNDKQRKDYEEHLEIDFSFEVPNLARFRVNAFNQARGAAAVFRTIPSDILSLEQLGAPEIFKKISSFPRGLVLVTGPTGSGKSTTLAAMVDYINESRHEHILTIEDPIEFVHQSKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRVVDVFPEGEKGMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMSHGMQTLDQCLQNLVNRGQISREDAQHKSANKQTQF
>NZ_CP041614.1|WP_144047641.1|4846686_4847382_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTTIADRLANAQHRIEQAAQISSRNVDEIQLLAVSKTKPNSDIVAAYAAGQRRFGENYVQEGESKVNALKQSCPEIEWHFIGPLQSNKTRIIACHFDWMHTVSREKIASRLNEQRPKEMSPLNICIQINISGETSKSGTTPEALKSLANRIDQMPNLTLRGLMAIPTATLNKKLQRDEFQQLQALYLELKSLYPQVDTLSMGMSNDLEQAIEQGSTMVRIGSAIFGEREKR
>NZ_CP041614.1|WP_144047642.1|4847511_4848330_+|pyrroline-5-carboxylate-reductase
MAEKKLCFIGAGNMTRSITTGLVNNGYPASLIHATNPSAAKLTGLQKALNIATSHDNLAAAKQADVIVLSVKPHFMQGVCEQLSTLDLTNKLIITIAAGIPAKRYGDYFGQEIKLIRTMPNTPTQIGVGMTGLYAGDEISSEQKALCEQLMLSGGEVVWVDSESELDQVIALSGSSPAYFFLFMEAMIDNAKASGMDEHKARQLVQQAALGAAQMVKQNPELTTAQLRENVTSKGGTTAQAIAALEAGNLRGIVKQAMDDCVARAQEMAEQY
>NZ_CP041614.1|WP_144047643.1|4848389_4848938_+|YggT-family-protein
MNALSFLVSTVFDLYLMVVIIRIWLQLAKADFYNPFSQFIVKATHPIVAPMRRVLPSMGGFDTASVVLAFMVVVAKFVVLSLIAGAAINIPTILLIAVVSVFKQAGVLLFWMLIIRAILSWVSQGHNPIEMVMGQLTEPLLSPIRRILPQMGGLDLSLLVVMIILNFVNMLLAQYVPFWANV

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Crispr_ID: NZ_CP041614_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_15

5300109-5300205

Orphan

Consensus_repeat	Method
ATAATACGTGCGGTATAGAATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_15

>merge|NZ_CP041614|15|5300109-5300205|CRISPRCasFinder
ATAATACGTGCGGTATAGAATTAACTCACTCAGCCCCCGAGTACACTAAGATCTTGTATGAAAAGAAACTAAACATAATACGTGCGGTATAGAACTA

>NZ_CP041614|15|15|5300109-5300205|CRISPRCasFinder
ATAATACGTGCGGTATAGAATTA	ACTCACTCAGCCCCCGAGTACACTAAGATCTTGTATGAAAAGAAACTAAAC
ATAATACGTGCGGTATAGAACTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144047966.1\|5307105_5307537_-\|DUF2000-family-protein	unknown	unknown	gnl\|CDD\|378176
NZ_CP041614.1\|WP_144049099.1\|5303808_5304615_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP041614.1\|WP_144047967.1\|5307661_5308105_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041614.1\|WP_144049101.1\|5308539_5310408_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131259
NZ_CP041614.1\|WP_144047953.1\|5286601_5287285_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NZ_CP041614.1\|WP_144047969.1\|5311312_5311843_-\|heme-utilization-cystosolic-carrier-protein-HutX	unknown	unknown	gnl\|CDD\|274986
NZ_CP041614.1\|WP_144047965.1\|5305148_5305418_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144047968.1\|5310621_5311221_-\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
NZ_CP041614.1\|WP_144047955.1\|5288409_5288901_+\|copper-resistance-protein-NlpE	unknown	unknown	gnl\|CDD\|377235
NZ_CP041614.1\|WP_144047963.1\|5300384_5301881_+\|cytochrome-c-oxidase-accessory-protein-CcoG	unknown	unknown	gnl\|CDD\|274278
NZ_CP041614.1\|WP_144049100.1\|5305887_5306904_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP041614.1\|WP_144047960.1\|5294439_5294775_+\|DUF3144-domain-containing-protein	unknown	unknown	gnl\|CDD\|378643
NZ_CP041614.1\|WP_144047958.1\|5292988_5293567_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP041614.1\|WP_144047964.1\|5302161_5303760_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|168170
NZ_CP041614.1\|WP_144047954.1\|5287301_5288123_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP041614.1\|WP_144047957.1\|5292184_5292853_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP041614.1\|WP_144047961.1\|5294827_5295442_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224199
NZ_CP041614.1\|WP_144047962.1\|5295689_5298185_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP041614.1\|WP_144047959.1\|5293672_5294197_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP041614.1\|WP_144047956.1\|5289012_5291817_-\|peptidase-M9	unknown	unknown	gnl\|CDD\|366791

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144047966.1\|5307105_5307537_-\|DUF2000-family-protein	gnl\|CDD\|378176	pfam09391, DUF2000, Protein of unknown function (DUF2000). This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold.	6.27285e-38
NZ_CP041614.1\|WP_144049099.1\|5303808_5304615_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	6.83929e-21
NZ_CP041614.1\|WP_144047967.1\|5307661_5308105_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.6304e-41
NZ_CP041614.1\|WP_144049101.1\|5308539_5310408_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NZ_CP041614.1\|WP_144047953.1\|5286601_5287285_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	5.14363e-72
NZ_CP041614.1\|WP_144047969.1\|5311312_5311843_-\|heme-utilization-cystosolic-carrier-protein-HutX	gnl\|CDD\|274986	TIGR04108, Heme_utilization_protein_HuvX, putative heme utilization carrier protein HutX. Members of this protein family are HutX, found paired with HutW in some heme utilization loci although not shown directly to be necessary for heme utilization. This protein is homologous to the heme carrier protein HemS, while its partner HutW is homologous to (but does not complement) HemN, the radical SAM enzyme oxygen-independent coproporphyrinogen III oxidase involved in heme biosynthesis.	6.32403e-74
NZ_CP041614.1\|WP_144047968.1\|5310621_5311221_-\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	5.75191e-93
NZ_CP041614.1\|WP_144047955.1\|5288409_5288901_+\|copper-resistance-protein-NlpE	gnl\|CDD\|377235	pfam04170, NlpE, NlpE N-terminal domain. This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. In Escherichia coli and Salmonella typhi, NlpE is also known to confer copper tolerance in copper-sensitive strains of Escherichia coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes.	4.72112e-36
NZ_CP041614.1\|WP_144047963.1\|5300384_5301881_+\|cytochrome-c-oxidase-accessory-protein-CcoG	gnl\|CDD\|274278	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.	0
NZ_CP041614.1\|WP_144049100.1\|5305887_5306904_-\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.19711e-45
NZ_CP041614.1\|WP_144047960.1\|5294439_5294775_+\|DUF3144-domain-containing-protein	gnl\|CDD\|378643	pfam11342, DUF3144, Protein of unknown function (DUF3144). This family of proteins with unknown function appears to be restricted to Proteobacteria.	4.42968e-25
NZ_CP041614.1\|WP_144047958.1\|5292988_5293567_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	4.68787e-10
NZ_CP041614.1\|WP_144047964.1\|5302161_5303760_+\|AMP-binding-protein	gnl\|CDD\|168170	PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP041614.1\|WP_144047954.1\|5287301_5288123_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.42234e-22
NZ_CP041614.1\|WP_144047957.1\|5292184_5292853_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	1.45279e-138
NZ_CP041614.1\|WP_144047961.1\|5294827_5295442_-\|LysE-family-transporter	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.12712e-30
NZ_CP041614.1\|WP_144047962.1\|5295689_5298185_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.3788e-58
NZ_CP041614.1\|WP_144047959.1\|5293672_5294197_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	5.73016e-09
NZ_CP041614.1\|WP_144047956.1\|5289012_5291817_-\|peptidase-M9	gnl\|CDD\|366791	pfam01752, Peptidase_M9, Collagenase. This family of enzymes break down collagens.	1.96178e-114

>NZ_CP041614.1|WP_144047962.1|5295689_5298185_-|TonB-dependent-receptor
MSNNKFGISSLSLAISIALAGSFASTQALAAEDQDILVKVENVERMAVVGSRAAPRSVGESPVPIDIIDGDELTKNGATDMNDLLSKVVPSYNVGVQPISDASTLVRPANMRGLAPDHTLVLVNGKRRHRASVIAFQGAGISDGAQGPDISVIPAIALKQIEVLRDGAAAQYGSDAIAGVINFQLKDASEGGSIEARYGQYYEGDGSTPMIAGNIGLPLTDDGFVNLSFEYKEADATSRSVQRDDAAALIAAGNTAVANPAQIWGAPETKEDFKFFFNMGLELNDDQHAYMFGNWARRDVEGGFYFRNPETREGVYADGDGNPLIGDLTDDMSGNCTTHEAAMTQDQCWSFQEMFPGGFTPNFGGVVEDSSLVAGLRGELKNGIGYDGTFSYGENTADFYIKNTVNASLGPDTPTSFSPGKYVQQETGASLDFTYFEVDTWSFAWGAEYRRETFEIYNGDVPSFEIGPLAAQGFGIGSNGFPGFKPEDAGSWTRSNIGIYADVEKELTDDFLMTAAIRYENYDDFGGTTNGKLSAIWNATEYFSLRGAASTGFRAPTVGQNNVRNVTTAFGPNGLQDQATLPPTNPISVQKGGKPLEPETSVNLSVGGVLTAGDFFLTVDYYHITLEDRISQTSPIELTDQDKQDLVEQGILDAGSFSAVRYFTNDFDTTTQGVDLVANYTPEWFEGSSFSLAYNWTETKVDSYNPENIGESKVKSLEEALPHHKGTLTWNQDLTDEFRSLVRMNYYGAYWEDHLDSNGDLPIDVSSAVTFDVELGYDVNENWSLALGAQNILDTYPDDNPWAGEAGAAYPVTSPYGFNGGFYYGRVNYTF
>NZ_CP041614.1|WP_144047961.1|5294827_5295442_-|LysE-family-transporter
MSFTAWLSLVAICCLGAMSPGPSLAMVVRHTLGGGRGKGIICAWAHSIGIGVYALVTLLGLAVVLKKAPMVFNGIAITGALYLAWMGVQALRSKGGMSDKLAAGKSTDSFTAARDGLAISLFNPKILLFFLALFSQFVMAADSLWGKSLIVFTPLIIDGLWYTIIAMVISHKSVLPKLREKAALIDKLSGVVLILLAVRVLVTI
>NZ_CP041614.1|WP_144047960.1|5294439_5294775_+|DUF3144-domain-containing-protein
MSEAKKETTIFQLADQFIALANEINTAEQDVSKVGTALRFAASRFNAFEAALKSADLAAEKANAIEWFTKEYKEMLNDNLDDHINNPPLSKEQEPKAQAPAKDDAVQIFTK
>NZ_CP041614.1|WP_144047959.1|5293672_5294197_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKRVAGFTLIELVVVIIILAILAVIALPKFINIKQDAQVSTVRATGGAFSAGIKLANLKWASKGHSGPVDNLQVYDNGQAGQLDINLWGWPAQNYPPFEASPRLNNTNDCMSVWRTVLQDAPSVSTSNDVADSDYRATYIAPDQCQLFFNELPTLSIYYDSRDGTVITDSDPTT
>NZ_CP041614.1|WP_144047958.1|5292988_5293567_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MHLFPHKIRTRSPSLNNKAAGFTLIELVVVIIILGILAVVALPKFLNLSVDAHVSTVKGTGGAFKSGINLARSVWAVRVGSGPADDLPTFGDAESGEMDFNDNGWPAQHWGTADSEGDSPKLDNTDDCISVWVTIFAGDQPSISNDISNETDYVATYNFDNSCTYTYSANTNLSITYDSLDGSVVIDSDPQS
>NZ_CP041614.1|WP_144047957.1|5292184_5292853_-|uracil-DNA-glycosylase
MTVHSNWNTFIEAERRLAYYQELQEFVLGERNTVKAIFPSQEEVFTAFEKTPLDKVRVVIIGQDPYHGPNQAHGLCFSVKHGVKSPPSLVNMYKELVTDIAGFTTPDHGHLSSWAEQGVLMLNTVLTVEQGKAHSHAKSGWETFTTNALKLLNEQDTPIVFILWGAHAIKKGKVITSLHHHILSGPHPSPLSAYRGFFGCQHFSKTNALLVSLGTKPIDWQV
>NZ_CP041614.1|WP_144047956.1|5289012_5291817_-|peptidase-M9
MFKKNLIILACSLAIAPAYASAQQQDLPVEGLTSTVAATSLSANSFNASDLSAGVLGTHALSASAKTANKPSASQPGKTPGSFLSMSLSQIKQGNTSKSAIQGATGMVGPEGNQGPAAAACVEYAEFASLTGQDLFDFVRTTDFNCISDLYRENDATAVAAYQATNVAEVANLAKAMAASYDSTTGSEMLNLFYFLRGAFYIEYYNDDLTYGDDTARHAVRDLLVEYTKNPNFADTSSSQGNTLAEFFIAWDSSGSYYEGAEAITNYLEAFSPEHLANADHRYALTKALTTLYYGSWDATYTGAAEDHTALINGLLKIATSEYIYNSDYSYESTDAFHEFGRFYEYQEYWGLSDALKTRLNEGVVEYMNNFERMSSEWADAAGYLDWYNPGECDQFGICGWADELEATILSINYSCSDTIDIRAQQLTNEELQASCDLMGGEEVLFHQVLATAHQPVADDNNTNLEVNIFDSYDDYNQYAGIIFGIGTDNGGMYLEGTPSDVDNQARFIAHEATWTDEILVWNLRHEYVHYLDGRFNQYGAFNYFDIDTGKSVWWSEGLAEYISHQNRYDEAVEIGRSQSFSLSEILSNTYDSGSERVYRWGYLGVRFLFENHRDDVDQLLVLARGGDANGWLGYIDNQIGTHYDAEWNTWLSTVTSNDEPLAGCEGDECLPPPCEETNTCPPVPCEETNTCPVEPCEETNSCPPEECTDEACDPANANLVDGVAKIGVSGGTAYYYIWVPEGTENIQFSSTAGTGDANLYVKASAWATSSDYDQASENAGNDESVLVTEVVGGDYYYVTLDSMDAFDGLNLLAEFNVETDPVDPVEPIEVTELQSGVRVKQLASDDALYFKIFVPGDMKKVKFIMSRGKGEADMYIRFGAIPTTQEYDFADTKDLGRERVIIKQPEGEDFYYVMLKARDGDFSKIRLKAKIKD
>NZ_CP041614.1|WP_144047955.1|5288409_5288901_+|copper-resistance-protein-NlpE
MMKLQIIAVSLLALTLSACSEQEIPTQDKAQQTKEALPLGDTSRTSLDWNGTYSGVTPCASCSGIDTTLTLKLDNTYVLETRYLGDENEAKKVFTEAGSFEWNSEGNKISLMGDASRKDDPKQYRVGENQLFMLDMQGNRITGSLAELYRLAKQGSHSEQQQD
>NZ_CP041614.1|WP_144047954.1|5287301_5288123_-|transporter-substrate-binding-domain-containing-protein
MAKMFCIASTFLLSVLILLACVIAIPLEAKPDKLKIVSNEYPPFYSKLSPEFGVVSHLTREALQRANLAFTHDFFPFSRAVLLTKGGYADGIIGIWYRESRVTWVEYSEPMLSVNVVLYKRVQHDISYTQLSDLSDFTIGVGRGYANPQAFMEAGLKTEEGSSDGENLKKLLLGRTDLVLISQEVAEYLMTEGPKEYDHAFEVIGDPLSIELFHFGISKTRGDHKDLIVRFNQGLNEMKLDGSVQRILKQHGFEANAYWLQELQQELKEVPRN
>NZ_CP041614.1|WP_144047953.1|5286601_5287285_+|5-formyltetrahydrofolate-cyclo-ligase
MVSYLYHSTLNATALNQSPTNNKLLNLSSLPQDKLNRKEIRANIRAARRSLSPDQQSSLGKQACTLMLAKLKFLRVKHLAIYLTNDGELDTRVLIEALWKLDIQVYLPRLHPFSKGNLVFLAYTPSTPLVQNSLKIWEPKLDITQMILPHRLDVVVTPLVAFDLTGNRMGMGGGFYDRTLANWTTRGKPFPIGFAHDCQQVESLPCEHWDVPLPMLVTPTRVLLFDS
>NZ_CP041614.1|WP_144047963.1|5300384_5301881_+|cytochrome-c-oxidase-accessory-protein-CcoG
MKNKIHSSSINPISLKAGAEVQISPAVDNTSQTIAIKQIPSISKPVNSKIHIREQKGYFQRLRTSLNSLLIAAFFLLPLIQYQGRQAVLFDLNEQQFYFFGTTLWPQDFTLLAWIFITAAFLLFFITAFLGRVWCGYLCPQTAWTFIYVWIENRIEGGHNKRRVLDKSRWNRDKIIKRTSKHLLWGLIALLTGCGFIAYFVPATSVYPQIFSFSASPMLAAWVWFFAICTYINAAWMREMVCLHLCPYARFQSAMFDANTITVAYDPNRGESRGPRKRKQATELGDCVDCNLCVDVCPTGIDIRNGLQYECINCGACIDACDQTMDKFGYARNLIGYRSENHLRGQNNKPLTSLKFLGYGIAAMVMLSVVFLDIYLKKDIQLNVIRDRQSLYRETLDDKIENSYTLKVRNKTQSEKHYRLSLSGDRSYSLQRSVELKVKAGEQLTYPLTVYSQTSQVIDQGTPDARQMSSGMTRIVFQLIDTQDPSNQISQDSNFFTP
>NZ_CP041614.1|WP_144047964.1|5302161_5303760_+|AMP-binding-protein
MAYDSDSTLDLTQYPSLIELIETASEKYADKTAYACLGHHASFSEIERDSRYFAAYLQSISGLKPGDRIAIQLPNIIQYVIAAYGAIRAGMVLVNTNPLYTERELTHQYNDSGAKVLVVLSDLLPSLVNVVANTGIDTVISTHAADLLAPQAQPQVSYTAHKFLDVLAQGESLPFERFSTNLDTLAALQYTGGTTGLSKGAMLSHSNLIANAMQIKSRLSDKLVEGEEIFVAPLPVYHIYAFMINLVLYFERGCCSVLVPNPRDIASLIKTLSDYKFTGFAGLNTLFVGLCHQPEFKALDFSHLKVTISGGTALTQAAAGMWKETTNCTISEGYGLSETSPVVSLNAPGLEQLGTIGKPVIGTKVKILDNDDNEVPQGETGELAVKGPQVMSGYWNKPEETAQVMTDDGYFKTGDIALATPDGLHKIVDRKKDMIIVSGFNVYPNEVEDVLANHEAVLECAVIGVADERAGEAVKAVIVLADQHSDPEAAKAAIISYCKEQLTAYKVPKQIVFMSALPKSTVGKILRRELRK
>NZ_CP041614.1|WP_144049099.1|5303808_5304615_-|alpha/beta-fold-hydrolase
MDYRYYPSDSNKVLILLHGSGWHSQQFFPLAKYISEQGQAQVVTPDLRGHGVSPVRRGDIDYIGQFEDDLADLIGQLKQDAELKDVKKSSIIMGGHSSGGGLAIRFAGGEYGNQADAYLLLAPFIFYNAPTTRPNAGGWAKPYTARIIGLSMLNNIGIHRLDYLTSIEFNMPAAVRNGTETLAYSYRLNASFSPRDYTKDLGAITQPLLLLAGSADETMFADKYQALISSTLPDNDKAEVKLLPGLSHMGIVVNPDVRPVIKQWLEGI
>NZ_CP041614.1|WP_144047965.1|5305148_5305418_+|hypothetical-protein
MYNQQESYMTKETLIETVENQIVDGEPKKVKETLMRLVMTGTPREEAIQWIACALAVEIFDVMKHEASFNAKRYDQHLDELPNMDWLDD
>NZ_CP041614.1|WP_144049100.1|5305887_5306904_-|IS110-family-transposase
MKITTIGLDIAKSVFHFVGVNKAGKLVKKKMIKRKDLIHFFAQVEPSLVVMEACGGANYWAREFQKVGHEVKLIAPQYVIPYRPGNKNDYNDALTIAEAAQRPNMRFVQPKPVEQQDVQMLHRMRERLNKQSTALVNQVRGMLAEYGIVIAKSTAAFRTAFPDILSDENNELTVKGRYIFNQLHEEFTDIEKRLKSCDTQIVEERNTNPVCLRIETSPGIGPVTSTAFYAAVGEGKDFSNGRHFSAWCGLVPRQHSSGGKDNLLGISKRGNAYLRTLFIHGARAVLQDCGGKQDRLSRWAYALAERKGFNKACVAVANKLARITWAIAAREDEYRTFA
>NZ_CP041614.1|WP_144047966.1|5307105_5307537_-|DUF2000-family-protein
MNNLPDETKKRFVAILNKKMDAGRTVNVLGHISVGLSNLLTSDDAVYIDYTDQDSNLHSSVSHFPFIVLKADNSNKIRKVREESIARGIKFTVFTHTMIEGGSIAQLFMTKETPELELNYLGICLFGETEVIREVTKKFSLYS
>NZ_CP041614.1|WP_144047967.1|5307661_5308105_+|winged-helix-turn-helix-transcriptional-regulator
MDRYNERILQELTANGRITNAELAQKIGLSASACLRRVQELESKEIIKGYRVVLNYKALGRGFVTYVTVGLSTHTSEAQKSFEDAISLSHEVVECHNVTGGFEYLLRVETTDLKSYKAFHSNTLGMLPHVAMITTHVVMESTKDERA
>NZ_CP041614.1|WP_144049101.1|5308539_5310408_-|ATP-binding-cassette-domain-containing-protein
MNTDTNKSVTSASASKSPKPQVHRKSVLPWIASFLKPYKARVIAAIVFLFIGSLAWLSLGQGVRLMVDEGFLQENGNRLNEIIMLVIGITALSSSAIFCRFYLMTWLGERVSADIRLKVYDHLLKLSPGFYAKLRTGEVISRFTADSTLLQSVVGSSLSMALRASVTVIGGIVMMGITSIKMTGLVLLAVPLVLVPIFFFGRKVRELSRKSQDRVGDLGAYVDETLHEIHTVQAYSHEDQDRALFSNRVEAVMDAARGRIWYRSILIALVMFLSIFAIALVTWVGAHDVMSGGMTGGELSAFMFYAVMVAGSVATISEVIGDIQRAAGASERLIELVEAPIDIPTVDNPAELPAKVEGDLKLTGVRFSYQDIQDSQLKQTEKTEVSGKSAPSIDEEVIRGLDIHIHPGERVALVGASGAGKSTLFELLQRFYCLNAGTIELDGIDIAQLKPQTLRQQYALVPQESVIFATSVLENVRYGRLEASEEEVFKACEAARAHEFISEFRDGYHTYLGERGVRLSGGQKQRIAIARAILADRPILLLDEATSALDAISEHKVKQALDSLMVGKTTLIIAHRLATVLNADRILVMERGLLVASGTHQELMQSSELYREFASLQLITET
>NZ_CP041614.1|WP_144047968.1|5310621_5311221_-|heme-utilization-protein-HutZ
MSEQKVSEQTAVQEKVSADKEQRLREKLLPEIEEFKTSRSSLQLATKSAAGVPNASYAPFALADDGFYILVSELARHGTNLKESSEVSVMLVEDESEAKTIFARKRLTFDAHASIVDRETEVFTKGVAALSARFGEMIDNLSVLKDFNLFKLTPHHGLYVKGFGQAFSLTGSELLDVDWKRDGHHGGAPKVEAEIAEPA
>NZ_CP041614.1|WP_144047969.1|5311312_5311843_-|heme-utilization-cystosolic-carrier-protein-HutX
MEKVIEEKLTDEIKLAIRSMLNDRPELMAGQIAAELAVTELEVVSQLPEGQFALLSLSEKDSLLEELPTWGPMTTIISVSGSIFEFKGSFPKGKYAHGYYNLITKGDGLHGHLKLDDISAIALLSRPFRGQESHAINFFGAKGEVVFKIYLGRDKKRVLIPEQVSRFKQLKEQSQA

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Crispr_ID: NZ_CP041614_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_16

5423383-5423483

Orphan

Consensus_repeat	Method
CAGATTACCTCAGCAATTCATAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_16

>merge|NZ_CP041614|16|5423383-5423483|CRISPRCasFinder
CAGATTACCTCAGCAATTCATAGCAAACACTAATGCCGCAAGATAAGTGATATTGATAAAATGAAAGATACGACTCAGCTTACCTCAGCAATTCATAGCAA

>NZ_CP041614|16|16|5423383-5423483|CRISPRCasFinder
CAGATTACCTCAGCAATTCATAGCAA	ACACTAATGCCGCAAGATAAGTGATATTGATAAAATGAAAGATACGACT
CAGCTTACCTCAGCAATTCATAGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144048050.1\|5431225_5432113_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP041614.1\|WP_144048048.1\|5429686_5430304_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP041614.1\|WP_144048046.1\|5427210_5428626_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NZ_CP041614.1\|WP_144048036.1\|5416044_5416761_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP041614.1\|WP_144048038.1\|5417501_5418374_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_CP041614.1\|WP_144048045.1\|5426495_5427158_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP041614.1\|WP_144048034.1\|5413873_5414449_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP041614.1\|WP_144048035.1\|5414642_5415920_-\|aminopeptidase-PepB	unknown	unknown	gnl\|CDD\|235330
NZ_CP041614.1\|WP_144048039.1\|5418598_5419969_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP041614.1\|WP_144048042.1\|5421493_5422339_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP041614.1\|WP_144048049.1\|5430397_5431072_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP041614.1\|WP_144048037.1\|5416920_5417364_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP041614.1\|WP_144048040.1\|5419968_5420460_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
NZ_CP041614.1\|WP_144048044.1\|5425923_5426454_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP041614.1\|WP_144048047.1\|5428827_5429619_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377092
NZ_CP041614.1\|WP_144048052.1\|5432599_5433415_-\|porin-family-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP041614.1\|WP_144048041.1\|5420545_5421340_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP041614.1\|WP_144049105.1\|5423918_5424689_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP041614.1\|WP_144048051.1\|5432121_5432490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144048033.1\|5412956_5413268_-\|Mg2+-and-Co2+-transporter	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144048050.1\|5431225_5432113_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.88298e-75
NZ_CP041614.1\|WP_144048048.1\|5429686_5430304_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	5.69129e-44
NZ_CP041614.1\|WP_144048046.1\|5427210_5428626_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP041614.1\|WP_144048036.1\|5416044_5416761_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	2.05098e-140
NZ_CP041614.1\|WP_144048038.1\|5417501_5418374_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	1.04679e-154
NZ_CP041614.1\|WP_144048045.1\|5426495_5427158_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	5.50132e-125
NZ_CP041614.1\|WP_144048034.1\|5413873_5414449_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	1.91752e-09
NZ_CP041614.1\|WP_144048035.1\|5414642_5415920_-\|aminopeptidase-PepB	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0
NZ_CP041614.1\|WP_144048039.1\|5418598_5419969_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	0
NZ_CP041614.1\|WP_144048042.1\|5421493_5422339_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.07172e-155
NZ_CP041614.1\|WP_144048049.1\|5430397_5431072_-\|pilus-assembly-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	4.62389e-14
NZ_CP041614.1\|WP_144048037.1\|5416920_5417364_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	4.27368e-78
NZ_CP041614.1\|WP_144048040.1\|5419968_5420460_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	2.21592e-63
NZ_CP041614.1\|WP_144048044.1\|5425923_5426454_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	9.31842e-87
NZ_CP041614.1\|WP_144048047.1\|5428827_5429619_+\|ABC-transporter-permease	gnl\|CDD\|377092	pfam03649, UPF0014, Uncharacterized protein family (UPF0014).	1.05567e-75
NZ_CP041614.1\|WP_144048052.1\|5432599_5433415_-\|porin-family-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	0.000534469
NZ_CP041614.1\|WP_144048041.1\|5420545_5421340_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	7.09495e-171
NZ_CP041614.1\|WP_144049105.1\|5423918_5424689_-\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	7.41366e-167

>NZ_CP041614.1|WP_144048042.1|5421493_5422339_+|pantoate--beta-alanine-ligase
MITTQEITQIREQVRAWHAKGETVAFVPTMGNLHLGHITLIKEAVKRADHVVASIFVNPMQFGQNEDLDAYPRTLAADQLALADAGAELLFTPTPKIIYPKGMEQQTYVEVPKIGDELCGASRPGHFRGVATIVCKLFNIVQPDVALFGKKDFQQLLVIKTMVEDLSMPIEIIGVETIREESGLAMSSRNGYLSQPQKVQAATLKQVLDTMSEEIQSGQAIIGVIDKAQAKLIEAGFKPDYLEVRSSTDLSPARDEQEALVIVAAAYMGATRLIDNLCFER
>NZ_CP041614.1|WP_144048041.1|5420545_5421340_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSKITSSTLLKFKQEGKKFTSLTAYDASFASAFDSEGVDVLLVGDSMGMVLQGHDDTLPVSVEDIAYHTRCVRRGVKRALLIADMPFMSYATPEQAMANAAILMQAGANMVKVEGGHWLLETVTKLTERGIPVCAHLGLTPQSVHVFGGFKIQGRDADNAQRILDEAKAIEAAGAQLLVVECIPAPLAKAISEALTIPVIGIGAGAGTDGQILVMHDVLGISSGYIPRFSKNYLKQTGEIREAIRAYIDEVEKGIFPGSDHTFS
>NZ_CP041614.1|WP_144048040.1|5419968_5420460_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MAKVYLALGANLTEPESQLDSACKALLELADSNIKPALTISSYYRSAPMGDVVQPDYVNAVACFHTSLDPIELLDVLQQIENEQGRVRLERWGPRTLDLDLLLYDNQTIDTPRLTVPHYGMKQRSFVLIPLAEIAPELTLPCGTALNSLIDVDLAAELEQIVR
>NZ_CP041614.1|WP_144048039.1|5418598_5419969_+|polynucleotide-adenylyltransferase-PcnB
MSENAIKVLYRLHKSGFKAYLVGGGVRDILLGFQPKDFDVVTNATPEEIKGLFRNCRLIGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRDFTVNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLGMTIEKDTASPIYELAPLLKDIPAARMYEEILKLFFNGQAQNNFNMMRDFGLFEPLFPLVNSLLVDEPEGPASKMMQSIMESTDSRVKAEKTVTPAFFYAAILWYPLSQRADDIALEGGLSLYDAYYAAMGDVMEQQCSTISIPRRFSTPAKDIWQLQLRFDRNQGTRAFKFIEHPKFRAAYDLLLLRASAEGGAVAKSAAWWKSFVEGGEEQRSVIARSVNKGSRNRNSNQRRRRKPSAKRTSPNSGEQSSSQPTEKPSENNKSANSGNQAASPSTDKPVG
>NZ_CP041614.1|WP_144048038.1|5417501_5418374_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSHQQYIGRFAPSPSGPLHLGSLVAALGSYLRARSQHGQWLVRVEDIDPPREIAGATDDILRTLEAYGLHWDGDVLYQSDRLDAYQSQIDKLIAQDKAYFCQCSRKQIKAMGGTYDGRCGRLTQPYHSGAIRIRNRAGIDRFNDLQMGEIKVDKDFATEDFIIKRSDGLYAYQLAVVMDDGLQNITEVTRGSDLLIPTCRQISLFQMFEQTPPTWLHLPLICTEPGMKLSKQNHAAAIDKAQPQASFNSALAFLGQVQITPEQQMEKMVTQAVAQFDLSLVPNQTEIIQA
>NZ_CP041614.1|WP_144048037.1|5416920_5417364_+|RNA-polymerase-binding-protein-DksA
MPEGTKKLGVLAIAGVEPYQEKPGEEYMNADQLGHFRKILDAWRNQLREEVDRTLSHMQDEAANFPDPVDRAAQEEEFSLELRARDRERKLIKKIEKTLQKIEEDDFGFCDSCGIEIGIRRLEARPTADQCIDCKTLAEIKEKQMAG
>NZ_CP041614.1|WP_144048036.1|5416044_5416761_+|DNA/RNA-nuclease-SfsA
MEFSPSFQQGKLIKRYKRFLTDIELEDGSQVTIHCPNTGSMRNCLFEGKRVWFSISDNPKRKYSRTWELAESDQGHLIGINTGRANQLAEDAIRTGVITELQGYSYLKREVKYGSENSRIDILLRDESTTSPKQDCYIEVKSCTLLEEGQGYFPDAVTTRGQKHLRELMEMVTLGHRGVLLFVVQHTGIDSVQAAAHIDPEYARLLTKAHQSGVEVLAYCAEMSPNCSSLIKSCPVKL
>NZ_CP041614.1|WP_144048035.1|5414642_5415920_-|aminopeptidase-PepB
MTDLMKVTLTKDAPAAHWGKADVTFSNDLATIHLQGDDELRQIQQAARKLRSQGLSTIALEGELWNVDSQWAFSLGFTTAKSEPEIRWTGDDSAQIELQNRLESAGFARHLINETPENLAPVKLAILAAHWLSEIGGDKVTYRIIEGQELLEQKWVGIHAVGRGSERPPAMLELDYNPLGEDAPVSVALVGKGITFDSGGYSIKASEGMLGMKCDMGGASTVTAALGLAMKQGLNKRVKLFLCCAENLISGHAYKLGDILTYKNGVTVEVVNTDAEGRLVLADGLQAASATGAELIIDAATLTGAAVMAVGTNYNAIFSPSSDVLAMAQAKAAEVGERVWPLPLDPWHREMCPSAYADTANSRPMKGGGAGGASNAAGFLWHFVSPDVKWLHMDLASAFADSPNALWAAGGTTHGMLTIAGLLQD
>NZ_CP041614.1|WP_144048034.1|5413873_5414449_-|response-regulator
MSKFARTRQKLDKLAHDWPRVSIILFSIVVSFVVLYALLSTHSFDRYLTASHEGHSVIDEKTIVYSEAADAIGRVLWIDDHPENNSREREYLRRENIGVYSTTSSREALLLISLYQYDVIISDMGREEDAIAGLKLLEKMRNQGTVIPFYIYTLNATDELIAKVTSSGGQGVAVDSRDLFRQVMTHFDTEL
>NZ_CP041614.1|WP_144048033.1|5412956_5413268_-|Mg2+-and-Co2+-transporter
MKIHDTSLEFESLPSLMVLLDSVAFMWFIALVTLSVFSWVALKLWHLHSLPKYMAKEKGMHQAKLIFWLCMLGLIWKPLWVIAVIAIVTDWDKAQLWFKGTRS
>NZ_CP041614.1|WP_144049105.1|5423918_5424689_-|ABC-transporter-permease
MKALYATAFKSILTKEINRFTRIWVQTLVPPAISMTLYFLIFGNLVGKRIGEMGGVTYMEFIAPGLIMMSVITASYSNVASSFFSAKFQRNLEELIVAPVPHYVMIAGYVGGGVVRGLCVGTIVTLVAMFFVDISLHHVGLVVLTVLLTSILFSLGGLINAIFANSYDDISIVPTFVLTPLTYLGGVFYSLSLLPDFWQGVSKLNPVVYMINVFRYGFLGYADMSVPFSIAVMVGFCVGLWTLAYYLISRGIGLRS
>NZ_CP041614.1|WP_144048044.1|5425923_5426454_-|hypoxanthine-phosphoribosyltransferase
MKHTIEEMISAEEIDLILNQLAEKINTHYADSERLLMVGLLKGSVVFMADLCRLIKGHVEIDFMSVSSYGNAMTSTREVKILKDVQSDIKGRDVLIVEDLIDSGHTLNKIREMLLLREPKSLALCTLLDKPEGREVDVPIDFIGLTIPNEFIVGYGIDYAEQYRNLPYIAKVIPSE
>NZ_CP041614.1|WP_144048045.1|5426495_5427158_-|UbiX-family-flavin-prenyltransferase
MSYPKKQKSISLAWTGASGAPYGLKLLECLLVADYQVFLMISSAARVVLATEEAVQLSANGKKSEQQLLDLFAERAESSLKGSLHVLGKDEWFSPPASGSAAPKQMVICPCSTGTLAAVATGMSNSLLERAADVVIKERGQLILVPRETPFSSIHLEHMLSLSKLGVTIMPAAPGFYHDPKSVQDLVNFMVARILDHLGVEHDLTNRWGYDKNNAEDSDK
>NZ_CP041614.1|WP_144048046.1|5427210_5428626_-|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MHVHILGICGTFMGGLALLARAEGHRVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGSNEDDAPDLVVIGNAMSRGNPCVEAVLNRGIPYTSGPQFLAEHVLKERWVLAISGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFVVEADEYDSAFFDKRSKFVHYLPRTLVINNLEFDHADIFDDLKAIQRQFHHVIRTVPGEGKIIWPKDSEAVQQVIDMGCWSEQEVYTRNCSDVIADNKGSSAADNQGIWSSKLIAADGHKFELFFDGESQGILDWSLIGQHNVENATMAIAAARHVGVKPESAIQALTQFEPPKRRMELIGEVNGVEVYDDFAHHPTAIATTLQGCRAKVGEAKITIILEPRSNTMKSGVHKDTLAGSMSLADQAYLYQADSIDWDIEAAMEKAELPVSVLYDIDEIVDTVASKAKSGDTIIIMSNGGFGGLHKKLLEKLKG
>NZ_CP041614.1|WP_144048047.1|5428827_5429619_+|ABC-transporter-permease
MQSTIDISWVQLALFMLILLIPFFINRYLKLALAKEITSAVLRMTIQLFLVGLYLQFLFELNSLSLNLIWLSLMLLIGASAIIGSAKLPKRRLYLPVITGLIVGVTPLIAILLLALLKPTPLYNAQYMIPMAGMLLGNCLSGNIVALQRLFSAFEEQKDQYEGALALGVTPYQAAFPFMQSALKQSLAPILASMTTTGLVTLPGMMTGQILGGSDPMVAIKYQLVILVAIFVMLTVSVTLSLILSIRSCIEPSGLIRVVIRKK
>NZ_CP041614.1|WP_144048048.1|5429686_5430304_-|isochorismatase-family-protein
MSKFSEVLTPDNAVLAMIDHQTGLLVSCADEHPLVVKNNIQGLCNMAKTLGLPSVVTASLADGPNGPIMPEITEILGDKVINREGEINAWHSSAFKSAIEATDRKKIIMAGIVTDVCLMFPALSAVEEGYDVYAVIDASATWNKTVQQASIHRLTQAGVKVTTWASVLAEIMSDWRSDKGMELGQVLADHTTSYNYVMNSYFARS
>NZ_CP041614.1|WP_144048049.1|5430397_5431072_-|pilus-assembly-protein
MEVLTKSELREGGFAGLKEHQFVMGKKAFGSNRNPQTWDGLGNFVYLADARFMPKGETLMHGHREVDVISVMVKGRINHEGSLEHGQMMNAKQAQVQRAGGEGFSHNEVNPDSEENQMIQLWVLPERSGEKAGYKLYSPKTGELTRIYGGEVGQDKTFDSRTQISVANLQEGHRFEQNTASLVYVSEGKVEIDGSLIEAGTLVRSDAFKLVALTSAQVIVIDKV
>NZ_CP041614.1|WP_144048050.1|5431225_5432113_+|LysR-family-transcriptional-regulator
MQNINDMLVFSEVIKAGSFTKAAEVLNLPKSNISRKLTRLETHLGVRLIERTTRSIHLTEVGQIYLQHCQRIQEEVESAELCVDHLVESPRGQLKICASVTIGQQIISKYLDEYTELYPDVNVSLELTNRRIDLVEEGFDLAIRIGELEDSSLIAKYLGQLDRKLCASPSLIDRHILPAHPSELAQLPSLFMTSSMPKYQWQLRQAEVIEQVQIKPKVEVNDFLSLSHLCISGCGVTLLPAYLCDDAINEGKLIQLLSDWQCAPSKVYALYPSHKSITPKVRSMLSFLAEVFEND
>NZ_CP041614.1|WP_144048051.1|5432121_5432490_-|hypothetical-protein
MTITSVGAPVNGLSNNSVNSPPSNQGGVTAATQVTEFSQVHLSSEARQLSAQSTQASQSMNADVASLNSNPPPEKEDSSWFEDALDSILPDDSVTKEDDCTCTVGKYLKAAASIGSVIALFI
>NZ_CP041614.1|WP_144048052.1|5432599_5433415_-|porin-family-protein
MKSAILRVNSNYKVARGLAVLSLISTGEKLNSRGFSQRKNTQNKRRKPRVRLPYAWFGILCCLFIVQASAAVESDYPTLGNNFFDAYDYQYMAEPNRSDKTLGKNKESKSRLNLNFNSSENLLVVEYHFSPQWQVSFESLRIGGSMFFADSLYQPTWRYLDSDRYSDPVSSYASSSYSNGLYEGWGASVVRTFKLTGRLSSQIYFGAYHWQEERLNFSGADKDASRGISPYGGGGIKYRLSDEVSIMLDWNHFEIQGENHDQLGLKFQYRF

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Crispr_ID: NZ_CP041614_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041614_17

6412898-6413016

Orphan

Consensus_repeat	Method
ACACATGAGCATAGATGATAAACAGGAAAAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041614_17

>merge|NZ_CP041614|17|6412898-6413016|CRISPRCasFinder
ACACATGAGCATAGATGATAAACAGGAAAAAGTGCCTGATGTGGCTTGTAGGACTCGTGTTAAGGCTGGTGTTAGGAGTGGAGTAGACACATGAGCATAGATGATAAACAAGAAAAAGT

>NZ_CP041614|17|17|6412898-6413016|CRISPRCasFinder
ACACATGAGCATAGATGATAAACAGGAAAAAGT	GCCTGATGTGGCTTGTAGGACTCGTGTTAAGGCTGGTGTTAGGAGTGGAGTAG
ACACATGAGCATAGATGATAAACAAGAAAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041614.1\|WP_144049172.1\|6420986_6424154_-\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|223989
NZ_CP041614.1\|WP_144049171.1\|6419633_6420620_+\|DUF1186-domain-containing-protein	unknown	unknown	gnl\|CDD\|236680
NZ_CP041614.1\|WP_144048732.1\|6408055_6408613_+\|NAD/FAD-utilizing-enzyme	unknown	unknown	unknown
NZ_CP041614.1\|WP_144049169.1\|6416152_6416797_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224199
NZ_CP041614.1\|WP_144048728.1\|6403330_6403951_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP041614.1\|WP_144048731.1\|6407057_6407846_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP041614.1\|WP_144048729.1\|6404071_6405964_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP041614.1\|WP_144048733.1\|6408861_6410340_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224537
NZ_CP041614.1\|WP_144048737.1\|6414298_6414991_+\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP041614.1\|WP_144048726.1\|6400150_6400945_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP041614.1\|WP_144048741.1\|6425700_6425907_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144048727.1\|6401563_6402451_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP041614.1\|WP_077755491.1\|6402466_6403255_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP041614.1\|WP_144048738.1\|6415106_6416078_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116
NZ_CP041614.1\|WP_144048734.1\|6412186_6412867_+\|cytochrome-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|239216
NZ_CP041614.1\|WP_144048730.1\|6406422_6406863_-\|FMN-binding-protein-MioC	unknown	unknown	gnl\|CDD\|181608
NZ_CP041614.1\|WP_144049170.1\|6418287_6419538_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225755
NZ_CP041614.1\|WP_144048740.1\|6424445_6425543_-\|DUF4172-domain-containing-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP041614.1\|WP_144048739.1\|6417691_6417901_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041614.1\|WP_144048736.1\|6413822_6414182_+\|cytochrome-C-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|227892

Protein	Function_ID	Function_description	E-value
NZ_CP041614.1\|WP_144049172.1\|6420986_6424154_-\|DUF3427-domain-containing-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	5.89686e-76
NZ_CP041614.1\|WP_144049171.1\|6419633_6420620_+\|DUF1186-domain-containing-protein	gnl\|CDD\|236680	PRK10396, PRK10396, hypothetical protein; Provisional.	3.63474e-11
NZ_CP041614.1\|WP_144049169.1\|6416152_6416797_-\|LysE-family-transporter	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.77699e-33
NZ_CP041614.1\|WP_144048728.1\|6403330_6403951_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	2.04043e-92
NZ_CP041614.1\|WP_144048731.1\|6407057_6407846_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	2.88034e-106
NZ_CP041614.1\|WP_144048730.1\|6406422_6406863_-\|FMN-binding-protein-MioC	gnl\|CDD\|181608	PRK09004, PRK09004, FMN-binding protein MioC; Provisional.	8.67066e-91
NZ_CP041614.1\|WP_144048733.1\|6408861_6410340_+\|c-type-cytochrome	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	4.49801e-56
NZ_CP041614.1\|WP_144048737.1\|6414298_6414991_+\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	5.30075e-37
NZ_CP041614.1\|WP_144048726.1\|6400150_6400945_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	4.72589e-79
NZ_CP041614.1\|WP_144048727.1\|6401563_6402451_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.11741e-72
NZ_CP041614.1\|WP_077755491.1\|6402466_6403255_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	6.15842e-87
NZ_CP041614.1\|WP_144048738.1\|6415106_6416078_+\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	2.1758e-145
NZ_CP041614.1\|WP_144048734.1\|6412186_6412867_+\|cytochrome-oxidase-subunit-III	gnl\|CDD\|239216	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.	6.4954e-32
NZ_CP041614.1\|WP_144048729.1\|6404071_6405964_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP041614.1\|WP_144049170.1\|6418287_6419538_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	1.14012e-76
NZ_CP041614.1\|WP_144048740.1\|6424445_6425543_-\|DUF4172-domain-containing-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	6.62621e-67
NZ_CP041614.1\|WP_144048736.1\|6413822_6414182_+\|cytochrome-C-oxidase-subunit-IV	gnl\|CDD\|227892	COG5605, COG5605, Predicted small integral membrane protein [Function unknown].	1.18045e-36

>NZ_CP041614.1|WP_144048734.1|6412186_6412867_+|cytochrome-oxidase-subunit-III
MSIFSKLTEKPWLAQPAGALDQGLIEYQPSSPGKTGLKFFIAVVTVIFFLFSVTYLSRSQYADFQALGGEPWSPLYQPIWLWVNTGWLLMASLSLHFAVGQVSEDKINRLLGLLTLSVIFSLFFIFGQWSVWQQLSLQGFVINSNPANSYFYMLTAIHGLHLLGGLFALARVLVIFSRKVKLDILQRSLVLCAWYWHYLWLLWLFIFALLTASPSTYNTIAAWCGL
>NZ_CP041614.1|WP_144048733.1|6408861_6410340_+|c-type-cytochrome
MAIAVVILLLVLVSVVFHFASPWWFTPIASNWTAIDDTITITFWITGIVFIAVNGFLAYCVFRFRFDKNKRADYEPENKKLEVWLTVFTTIGVAAMLAPGLIVWGDFVTVPDNAETFEVVGQQWHWSYRLPGKDGVLGQSAVDLMDEKNPFGLNPDDINAQDDILIPSNVMHILLDQPVKVLMRSKDVLHNFAVPQFRVKMDLVPGIETYLWFTPTRLGRFEMLCEELCGMAHYTMRGQIVVDTAQDYQAWLDKQLTFRESLDAPAGDLQLGQNLYASCAVCHGNKAQGNETLNAPMLAGQPAWYLTRQLNYYKSQVRGSHQQDIYGQQMAAMANTLVDAKAVKDVTAYIASLPALAIFPAAVNNGPLARSIESGQRLFTNCAYCHGDKAEGKFALNAPRLAGQHAWYLKRQLQNYRASIRGAHREDLYGTQMIMMSRLLQNEQAIDDVIAYITRLKPASDAGYHQSASRAVRGIEFRIIKDQSHNTQEVSR
>NZ_CP041614.1|WP_144048732.1|6408055_6408613_+|NAD/FAD-utilizing-enzyme
MLRHYFITSDLDDLEKVEQELEAEGITEPQIHILSEQDADVENHHLHEVEPVLKQDVVHSTEIGAVIGFVISSATLMLAYEMGWTESAAGWLPFIFLAIVILGFCTWEGGFIGIQKPNVHFERFQELLHKGKHVLFVDVDPNQEPVFAKIINAHPKLEPAGLGAATPHWVVRWQDKFHSFMKTMP
>NZ_CP041614.1|WP_144048731.1|6407057_6407846_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MLDRSKLTCSHSTGLDTAKEIAKFDRLAEEWRDPKGKFKQVLAFNQTRLIAIEKMIAQHLARDLNNPDPLAGLSLLDIGCGAGLLCEPLAELGADVTGIDASENNILVASQHAKTNSISVNYIHCLASDLEDKAETNRYDIVLNTEVIEHVADQQGLIDTCCKLLKPGGLLVMATLNRTITSYIVGVIGAEYVMRYLPIGTHEWRYFVKPQEISAMLSKQGLETINVTGMTFNPFTKHWSVNQNTRVNYLLFAAKPSDISSV
>NZ_CP041614.1|WP_144048730.1|6406422_6406863_-|FMN-binding-protein-MioC
MAKIDILVGTTLGNAEYVADEFSAVLSGLGHENVIHMTPKFTDLNLKSLWLIVSSTHGAGDLPDNIMPFLEEILSQKPDLSGTKYAICAIGDSSYDTFCQGPEKLAQALESCGAQVYVDKIQIDVQYDHVPEDPALAWLEQWQDRL
>NZ_CP041614.1|WP_144048729.1|6404071_6405964_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MHFHERFDVIVVGGGHAGTEAALAAARMGSNTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAVATDFAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQQILQNQPNLRLFQQGVDDLIVENGRVTGVVTQIGLAFEAPTVVLTAGTFLSGKIHIGMQNYSGGRAGDPPSIALADRLRELPIRIGRLKTGTPPRIDANTINFDLMAEQKGDTPLPVMSFIGDVKDHPRQISCYVTHTNERTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKINRFADKTSHQIFIEPEGLNTNEIYPNGISTSLPFDVQLDLVRSIKGMENAQIIRPGYAIEYDYFDPRDLKNSLETKSIGGLFFAGQINGTTGYEEAAAQGLLAGMNASLQVQGKESWAPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGREFGLVDDNRWSQFSEKRESIELELQRLRGLWVHPNSPLLDVLNPELNTPISREASFEDLLRRPEMDYPKLMSLEGFGPGLEDQRAAEQVQIQIKYSGYIQRQQDEIDKALKHETTGLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQASRISGMTPAAISILLVHLKRRGLLRRKAS
>NZ_CP041614.1|WP_144048728.1|6403330_6403951_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MLSALLDEYLAEMNLTATEQQKKQLVGFVEMLNKWNKAYNLTSVRDPEQMLIRHIMDSLAVSAHLVGERFIDVGTGPGLPGIPLAIMNPDKHFVLLDSLGKRIRFQKQVQFDLGIDNISSVESRVEAYEPEEKFDGVLSRAFASIEDMLHWCHHLPADNGCYYALKGQLAEDEMTKIPEGYELTDVIELSVPRLDEQRHLLRVVKK
>NZ_CP041614.1|WP_077755491.1|6402466_6403255_-|ParA-family-protein
MGKVIAVANQKGGVGKTTTCVNLAASLAATKRKVLLIDLDPQGNATMGSGIDKYSVENTAYELLVDEKSFDEVVYRDTSGKYDLIAGNGDVTAAEIKLMEFFAREIRLRNALAPIKDDYDYIFIDCPPSLNMLTVNAMSAADSVLVPMQCEYYALEGLTALMDTISKIGAMVNPGLHIEGILRTMYDPRNRLANDVSDQLKQHFGEKVYRTVIPRNVRLAEAPSFGAPAMYYDKSSAGAKAYLALAGEIIRRAEQHQELEQA
>NZ_CP041614.1|WP_144048727.1|6401563_6402451_-|ParB/RepB/Spo0J-family-partition-protein
MTLKKRGLGKGLDALLSTSHAASKKLYSAEEAAEVTAKTDDLLMLAIDLMQPGKYQPRKDMSTEALEELAESIKAQGIIQPIVVRKVSATMFEIIAGERRWRAAQIAKLDKVPCIVKQVPDEAAVAISLIENIQREDLNAMEEAIALDRLMREFELTHQQIATAVGKSRATVSNLLRLNGLNEPVKRMLEYGDIDMGHARALLAIEGDEQTNIARLVAAKELTVRETERLVTKTLNPPKITDKPVKDHDVTRLEGLLVERLGAKVSITHNKKGKGKLVINYQDLAELDGIINKIH
>NZ_CP041614.1|WP_144048726.1|6400150_6400945_-|F0F1-ATP-synthase-subunit-A
MAATGEALTPQGYIQHHLTNLSVGEGFWTWHIDSLFFSVGLGVLFLWLFRSVGKKATTGVPGKLQCFVEMIIEFVDSSVKETFHGRNPVIAPLALTIFVWVFMMNFMDMVPVDWIPSLAAAAGIPYMKVVPTTDLNITFSMAIGVFLLIIYYSIKVKGVSGFVKELTMQPFNHWTMIPVNFLLESVTLIAKPISLALRLFGNLYAGELIFILIALMYGGNMALSALGVTLQLGWLIFHILVITLQAFIFMMLTIVYLSMAHEDH
>NZ_CP041614.1|WP_144048736.1|6413822_6414182_+|cytochrome-C-oxidase-subunit-IV
MSQITNKDAVPAEEEQAQPKVHPISLYLKIWGLLFVLSTMSYMVDFFEVQGILRWTLILLFMSLKAGLIITIFMHVRWERMALKLVLFLPPLAIVVFISLMAIEGDYTFVNRLLSFISV
>NZ_CP041614.1|WP_144048737.1|6414298_6414991_+|SCO-family-protein
MLREVKTKLLLGASILIIVTLVLISISFILVKASPSVNLPLQSASLLQEPITLSNFTLVNHHNQDFTQADLLGQWHLLAYGYLNCPDVCPATLLLLNSLMHSMQKDNQFTDVQLLFYTIDPGRDSIERLAEYVAFFGKDIIGLKPVEVGVFDGMSKRFEQELGIKVKISTQIGSEDSYQVGHGVAIYLLDPQGRLHAVFEPSVDPFGNRHFNKDTLYHDYVLIRKNASAL
>NZ_CP041614.1|WP_144048738.1|6415106_6416078_+|nucleoside-hydrolase
MTSKIILDTDPGIDDAMAIIFAEAHPEIELKAITCVYGNATIENGTHNALFLKQKYGLQADVAKGAAKPIVRPPVGATVVVHGESGLGDVQAPAELSVKADPRPAYQYIIDTLRAEPGEITLVAVGPLTNLALALEAAPEIVTLVKEVVVMGGAFGVNDHRGNVTPYAEANIHDDPHAADIVFGASWPVVIIGLDVTEQSFFTKDYLDRLRDDAGEVGQFIWDISRYYLKFYSEKVGLEGCHVHDPSAIAYVIDPSLFTLREGPVRVVTDGPAEGMTIQKFDKRNYMHDEWQSHESQRVGISVEDERLLSLYRQTIIDYGQKR
>NZ_CP041614.1|WP_144049169.1|6416152_6416797_-|LysE-family-transporter
MMIDLAVLPLYLTTVIALLLIPGPDMLLIASSSLSYGKKVGVFASLGNATSGLILTLLAAMGVSALIAMNPMALQVLRILGGAYLMKMGWDCMRSGAADAPEIEQQSGLAKMLYRRAVFSNLLNPKALLFFVLFLPQFVSPQLTATSGEQMLALGLLLNVMGLLFNLLLVLMVGTLGKSLLKNDKFRANQNKFMGIIFFALAIWLLGSQVQAMG
>NZ_CP041614.1|WP_144048739.1|6417691_6417901_+|hypothetical-protein
MLRFILSIIIVYAFWLTYQDVTSYLDEPVPSESLLANQEHQLDSQLNEVKRYNLIEELSCDSNSDCGSE
>NZ_CP041614.1|WP_144049170.1|6418287_6419538_+|winged-helix-turn-helix-domain-containing-protein
MTSPYSAQEWLQLNLQQQGLLKPVSSVSEAIQQLSYIQIDSINVVERAHHHVLHNRIPEYQASQLDLAMANKEIFEYWSHAAAYLPISDYRYSLYHKTHLKQGGKHWFEPEHKVMREVKAKITAEGPLKASHFANTSTFASTSTGASTGWWDWKPAKRALEQLFMQGELMVAHRDKFQKVYDLTERVLPSHVDNQLPDETEFARYLIHRYLSAHGFGTIQQIFYLRKNIKPILVKTLNEMCLAGELARFSESGQEYFYFPEVQPLIPVPDRVWLLNPFDNLVIQRQRLKHWFGFDYQIEVYVPAVKRRYGYYSLPILWRDRFVGRLDVKAERKQGLLLLQQLTIEEQAFSPSSKLCISSSTRSCTRPRVGESELEEFVAALGLSINEYARFNHCQEWKLVRSNNKYIGDLLVNQSS
>NZ_CP041614.1|WP_144049171.1|6419633_6420620_+|DUF1186-domain-containing-protein
MRVHLFPFELKMKLAEIISILSSDDLTELPLAALLSAREQWSELLPVIDDLMQKFIDTEDLSESEANLLFFGICLIIDRKQFSCFDSLINLTNKEDCDSPLERLLGDFIGSDLSTAYYILAQGKPEQLCRLVNSDQAGEIVKMAALGVLFAQFHTDQIDRETLNQSIPAFIENLVANDQSIALFELVNLLISHEFNQYHAQFLEYVKNKVIDEGPIENQSIIDWNNSCIGYSEWDNGLISGDYDVIDALSQWTGFGPEGDMSDAELMEIFDDLMNTPNKLDDMDFDSYLDAHVDSYEIKEPHIAEIKAGRNDPCPCGSGKKYKKCCLN
>NZ_CP041614.1|WP_144049172.1|6420986_6424154_-|DUF3427-domain-containing-protein
MMQTGIYEQLITKVISNKLDKDKFFISERNMDTTEQTLWLTRALVRVFHLAISESKNIKDSPLAQIELANELIYWLQERIDNLDLSDYTIAQPAKLLTAIFDKQDPVSAKLSAHIDKITPLTGLTQSELFCGSNQGISLESEIKREILSSNKICWIISFIKWTGLRIFMNELRTFTSNNKHKLQIITTSYMGATDLKAVQWLAKLPNTEVKLSYNHNHNQERLHAKSYLFMRDSGFHTGYIGSSNLSRSALTNGLEWNLKITNQEIPHIIDKTFSTFETYWQQPEFDFFDGSEKASSKLNRSLSLGRGDKNHTNTVFFDLAPHQHQIEILEKLDAERNLHGRNRNLIVAATGTGKTLISAFDFKRFYQENPTAKILFIAHREEILKQAIESFRAVLKQPNFGELWVGQHKPDSYDQLFASIQSFNNQIDNINLKSDYYDFIVIDEVHHVSAESYRKFISHFSPKILLGLTATPERHDGKNILDDFGGVIAAELRLPEAINLRYLCPFQYFGIDDNTDLRQVKWENGRYNPSELTQVYTQNDQRLQKILQNIEELVTNPLEMRALAFCVNQDHAQYMAEKFCLKGIPSAVLTSKNAFERHSVRQDLQLGNINILCVVDIFNEGVDIPEIDTLLFLRPTESLTIFLQQLGRGLRHNDGKECVTVLDFVGNARTEYDFSQKFRALIGKTHTAISKEIEHGFPHLPLGCHIELQKKTKEIILNNIKKAILNQQKLKSHIQNFQHHTVQKLTLSNFLNFYPNIRLIDIYKKKPKEGGGWTSLLSDLLLIPRVNETTIAENYHRAIFNSLIKCDARTYLKFIRSLAINHFKWVDNGDAIEQRMALMCHYDFWNCSGDKLGFNSLSESLAALTHPEYQNELIQVINYLLDNNDTQVQRLQTDFPCPLQLNARYTREQIIAGLGGASFEKQAMSREGYFNLKELNVELLFVTLQKSDQHFSPTTLYHDYAMSPTHFHWQTQNSARPDSGKGLAYIQHKDIGKKLMLWVRESNKDENGNTMGFVNLGWVNLAETSGSQPMNITWELHEPMPSYLWKDAAKLANS
>NZ_CP041614.1|WP_144048740.1|6424445_6425543_-|DUF4172-domain-containing-protein
MWIWQQANWPDFRWETDNIALLLRQVSFNQGLLLGKLDSEPSAQMTLDTLLANIIHSSAIEGEKLNAFSVRSSLANKLGISDEKPYPTTVQTDGLAEMTLDALQNWQTELSLQRIMDWHTLLFPEGYTLFNPVQGGVLRGSEPMQVISGRIDKPKVHFEAPPRSGLEDELTRFIDWFNRSQQDVAMDPLIRAAITHLWFVTLHPLDDGNGRITRLLTDLALAQAENRSIHFYAMSVSILERRQAYYDILESTQKGELDITSWLVWFLDTLNSSLQKSLNDIAQTVAKTNYWQRVDQTLLSGEQVKVLNRLLDGEFEIGISSSQYQKVTKVSRATATRHLAQLVEQSFLVKAGAGGRSTRYLLASK
>NZ_CP041614.1|WP_144048741.1|6425700_6425907_-|hypothetical-protein
MLLITSGEVGADASARRCEAIPGRFTVSSLKPKLAAASTPVGKAKTYLSDLASTAQRDTPPSNFYPVS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3373288 : 3382046

uncultured_Caudovirales_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144046646.1\|3373288_3373951_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.8e-33	41.3
WP_144046647.1\|3374092_3374482_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.7e-22	44.1
WP_144046648.1\|3374481_3374838_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_144046649.1\|3374837_3375119_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_144046650.1\|3375115_3375451_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_144046651.1\|3375832_3377119_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.1e-97	44.3
WP_144046652.1\|3377137_3377512_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.7e-08	33.6
WP_144046653.1\|3377504_3378836_-	AAA family ATPase	G3MBE0	Bacillus_virus	1.5e-78	40.7
WP_144046654.1\|3379547_3382046_-	DUF87 domain-containing protein	S5VNE3	Mycobacterium_phage	3.1e-85	48.8

DBSCAN-SWA_2

3703020 : 3745122

Pseudomonas_phage(27.27%)

portal,protease,integrase,terminase,transposase

attL 3705162:3705176|attR 3750505:3750519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144045111.1\|3703020_3704541_+\|transposase	ISNCY family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	5.9e-10	35.6
WP_144046853.1\|3704963_3705815_+	AAA family ATPase	NA	NA	NA	NA
3705162:3705176	attL	NA	NA	NA	NA
WP_144046854.1\|3705823_3706639_+	AAA family ATPase	Q2P9X8	Enterobacteria_phage	5.7e-12	29.6
WP_144046855.1\|3706635_3707229_+	hypothetical protein	NA	NA	NA	NA
WP_144046856.1\|3707225_3707732_+	hypothetical protein	NA	NA	NA	NA
WP_144046857.1\|3708034_3708466_-	hypothetical protein	NA	NA	NA	NA
WP_144046858.1\|3708490_3708703_-	hypothetical protein	NA	NA	NA	NA
WP_144048998.1\|3708707_3710477_-	hypothetical protein	A0A2I7QS09	Vibrio_phage	1.1e-132	42.0
WP_144046859.1\|3710548_3710848_-	hypothetical protein	NA	NA	NA	NA
WP_144046860.1\|3710840_3711830_-	hypothetical protein	A0A088C4T9	Shewanella_sp._phage	6.1e-32	29.6
WP_144046861.1\|3711872_3714287_-	hypothetical protein	A0A2I7QRV0	Vibrio_phage	4.8e-216	48.2
WP_144046862.1\|3714294_3714666_-	hypothetical protein	NA	NA	NA	NA
WP_144046863.1\|3714665_3718523_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	7.1e-36	32.5
WP_144046864.1\|3718631_3719351_-	hypothetical protein	A0A2I7S8N4	Vibrio_phage	1.9e-27	36.4
WP_144046865.1\|3719347_3719773_-	hypothetical protein	NA	NA	NA	NA
WP_144046866.1\|3719799_3720363_-	hypothetical protein	NA	NA	NA	NA
WP_144046867.1\|3720380_3720719_-	hypothetical protein	NA	NA	NA	NA
WP_144046868.1\|3720711_3721032_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	2.8e-15	48.6
WP_144048999.1\|3721111_3723106_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	1.1e-210	58.1
WP_144046869.1\|3723086_3724652_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	5.1e-118	46.8
WP_144046870.1\|3724684_3724888_-	hypothetical protein	A0A1B0YZU1	Pseudomonas_phage	2.8e-08	57.1
WP_144046871.1\|3724884_3726876_-\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	2.1e-193	50.1
WP_144046872.1\|3727392_3727644_-	hypothetical protein	A0A1B1ITN8	uncultured_Mediterranean_phage	1.7e-07	36.4
WP_144046873.1\|3727636_3727912_-	hypothetical protein	NA	NA	NA	NA
WP_144049000.1\|3728136_3728736_-	glycoside hydrolase family protein	A0A1B1ITF9	uncultured_Mediterranean_phage	3.8e-37	52.5
WP_144046874.1\|3728771_3729107_-	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	8.1e-21	54.9
WP_144046875.1\|3729310_3729724_-	S24 family peptidase	A0A1B1ITQ0	uncultured_Mediterranean_phage	1.4e-11	31.9
WP_077755032.1\|3730369_3730711_+	helix-turn-helix transcriptional regulator	Q8H9R3	Vibrio_phage	5.9e-27	55.8
WP_077755033.1\|3730987_3731191_+	hypothetical protein	NA	NA	NA	NA
WP_144046876.1\|3731264_3731624_-	hypothetical protein	NA	NA	NA	NA
WP_077755034.1\|3731613_3731832_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_144046877.1\|3731887_3733138_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GND4	Pseudomonas_phage	6.6e-60	37.4
WP_144049001.1\|3733134_3733365_-	hypothetical protein	NA	NA	NA	NA
WP_144046878.1\|3733360_3734035_-	replication protein P	NA	NA	NA	NA
WP_144046879.1\|3734031_3734277_-	hypothetical protein	NA	NA	NA	NA
WP_144049002.1\|3734444_3734750_-	GntR family transcriptional regulator	Q8HA96	Salmonella_phage	2.5e-29	74.7
WP_144046880.1\|3734864_3735488_-	hypothetical protein	NA	NA	NA	NA
WP_144046881.1\|3735527_3735722_-	Cro/Cl family transcriptional regulator	A0A0S2SYB8	Pseudomonas_phage	3.6e-05	37.9
WP_144046882.1\|3735827_3736520_+	helix-turn-helix domain-containing protein	W6MVG5	Pseudomonas_phage	3.3e-53	49.4
WP_144046883.1\|3737203_3737440_+	hypothetical protein	NA	NA	NA	NA
WP_144049003.1\|3737487_3737742_+	hypothetical protein	NA	NA	NA	NA
WP_144046884.1\|3737797_3738046_+	hypothetical protein	NA	NA	NA	NA
WP_144046885.1\|3738593_3739436_+	hypothetical protein	NA	NA	NA	NA
WP_144046886.1\|3739432_3739669_+	hypothetical protein	NA	NA	NA	NA
WP_144046887.1\|3739670_3740273_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_144049004.1\|3740337_3740748_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_144046888.1\|3740881_3741814_-	hypothetical protein	NA	NA	NA	NA
WP_144046889.1\|3741925_3742267_-	hypothetical protein	NA	NA	NA	NA
WP_144046890.1\|3742968_3743571_-	hypothetical protein	NA	NA	NA	NA
WP_144046891.1\|3743943_3745122_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GLL1	Escherichia_phage	2.1e-71	39.6
3750505:3750519	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041614

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection