Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041616 Ornithinimicrobium sp. H23M54 chromosome, complete genome 10 crisprs csa3,DEDDh,WYL,cas4,DinG,cas3 1 2 2 0

Results visualization

1. NZ_CP041616
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_1 465747-465889 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_2 742446-742540 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_3 949613-949720 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_4 1511726-1511801 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_5 1970617-1970694 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_6 2418560-2418662 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_7 2856965-2857061 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_8 3076861-3076952 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_9 3770957-3771064 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041616_10 3949270-3949378 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP041616_1 1.1|465792|53|NZ_CP041616|CRISPRCasFinder 465792-465844 53 NZ_CP041616.1 3100035-3100087 1 0.981

1. spacer 1.1|465792|53|NZ_CP041616|CRISPRCasFinder matches to position: 3100035-3100087, mismatch: 1, identity: 0.981

gtcagcccggcgagcgatgcgaccggatgggcgccgtgagatgtccaggcaca	CRISPR spacer
gtcagcacggcgagcgatgcgaccggatgggcgccgtgagatgtccaggcaca	Protospacer
****** **********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041616_5 5.1|1970642|28|NZ_CP041616|CRISPRCasFinder 1970642-1970669 28 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1305998-1306025 6 0.786
NZ_CP041616_5 5.1|1970642|28|NZ_CP041616|CRISPRCasFinder 1970642-1970669 28 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 91553-91580 6 0.786
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 NZ_CP032688 Rhizobium sp. CCGE531 plasmid pRCCGE531a, complete sequence 68560-68587 7 0.75
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 NZ_CP032693 Rhizobium sp. CCGE532 plasmid pRCCGE532a, complete sequence 68560-68587 7 0.75
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 NZ_CP034999 Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence 329140-329167 7 0.75
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 NZ_CP006987 Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence 183469-183496 7 0.75
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 NZ_CP013523 Rhizobium phaseoli strain R744 plasmid pRphaR744a, complete sequence 225872-225899 7 0.75
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 NC_020060 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence 157421-157448 7 0.75
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 NZ_CP017103 Rhizobium gallicum strain IE4872 plasmid pRgalIE4872a, complete sequence 128439-128466 7 0.75
NZ_CP041616_4 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder 1511750-1511777 28 CP006878 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence 156772-156799 7 0.75

1. spacer 5.1|1970642|28|NZ_CP041616|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.786

atggcggccgcgcatgggagagggtgcc	CRISPR spacer
aactcggccgcccatgcgagagggtgca	Protospacer
*   ******* **** ********** 

2. spacer 5.1|1970642|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 6, identity: 0.786

atggcggccgcgcatgggagagggtgcc	CRISPR spacer
aactcggccgcccatgcgagagggtgca	Protospacer
*   ******* **** ********** 

3. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP032688 (Rhizobium sp. CCGE531 plasmid pRCCGE531a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

4. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP032693 (Rhizobium sp. CCGE532 plasmid pRCCGE532a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

5. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

6. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP006987 (Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

7. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP013523 (Rhizobium phaseoli strain R744 plasmid pRphaR744a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

8. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NC_020060 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

9. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP017103 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

10. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to CP006878 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2111768 : 2138905 20 Gordonia_phage(33.33%) integrase,transposase attL 2108418:2108439|attR 2139073:2139094
DBSCAN-SWA_2 3890445 : 3946391 50 Mycobacterium_phage(20.0%) protease,integrase,tail attL 3880789:3880805|attR 3906731:3906747
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage