CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041616	Ornithinimicrobium sp. H23M54 chromosome, complete genome	10 crisprs	csa3,DEDDh,WYL,cas4,DinG,cas3	1	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041616_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_1

465747-465889

Orphan

Consensus_repeat	Method
CGCATCGCGCCCCTTTTGTCGCATGGCCTCCCGGCTGCGACTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_1

>merge|NZ_CP041616|1|465747-465889|CRISPRCasFinder
CGCATCGCGCCCCTTTTGTCGCATGGCCTCCCGGCTGCGACTTCGGTCAGCCCGGCGAGCGATGCGACCGGATGGGCGCCGTGAGATGTCCAGGCACACGCATCGCGCCCCTTTTGTCGCATGGCCTCCCGGCAGCGACTTCG

>NZ_CP041616|1|1|465747-465889|CRISPRCasFinder
CGCATCGCGCCCCTTTTGTCGCATGGCCTCCCGGCTGCGACTTCG	GTCAGCCCGGCGAGCGATGCGACCGGATGGGCGCCGTGAGATGTCCAGGCACA
CGCATCGCGCCCCTTTTGTCGCATGGCCTCCCGGCAGCGACTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143784895.1\|464404_464848_-\|ribonuclease	unknown	unknown	gnl\|CDD\|226740
NZ_CP041616.1\|WP_143781932.1\|471289_472279_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP041616.1\|WP_143784894.1\|464022_464304_-\|metal-sensing-transcriptional-repressor	unknown	unknown	gnl\|CDD\|376835
NZ_CP041616.1\|WP_143781936.1\|475968_476319_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143781920.1\|457847_458891_-\|HAD-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|369792
NZ_CP041616.1\|WP_143781937.1\|476549_477017_+\|GyrI-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|214874
NZ_CP041616.1\|WP_143781935.1\|474395_475805_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP041616.1\|WP_143781926.1\|463735_463981_-\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NZ_CP041616.1\|WP_143781931.1\|470475_471204_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP041616.1\|WP_143781921.1\|458790_459600_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349977
NZ_CP041616.1\|WP_143781922.1\|459704_460340_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP041616.1\|WP_165699978.1\|465921_466863_-\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379128
NZ_CP041616.1\|WP_143781934.1\|473124_474216_-\|tartrate-dehydrogenase	unknown	unknown	gnl\|CDD\|273963
NZ_CP041616.1\|WP_143781930.1\|467942_470474_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223256
NZ_CP041616.1\|WP_143781927.1\|465048_465591_-\|barstar-family-protein	unknown	unknown	gnl\|CDD\|376530
NZ_CP041616.1\|WP_143781923.1\|460597_461200_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370266
NZ_CP041616.1\|WP_143781933.1\|472271_473075_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP041616.1\|WP_143781929.1\|467100_467862_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP041616.1\|WP_143781924.1\|461209_461449_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143781925.1\|461436_463656_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143784895.1\|464404_464848_-\|ribonuclease	gnl\|CDD\|226740	COG4290, COG4290, Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism].	8.10899e-39
NZ_CP041616.1\|WP_143781932.1\|471289_472279_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.63315e-65
NZ_CP041616.1\|WP_143784894.1\|464022_464304_-\|metal-sensing-transcriptional-repressor	gnl\|CDD\|376835	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor. This is a family of metal-sensitive repressors, involved in resistance to metal ions. Members of this family bind copper, nickel or cobalt ions via conserved cysteine and histidine residues. In the absence of metal ions, these proteins bind to promoter regions and repress transcription. When bound to metal ions they are unable to bind DNA, leading to transcriptional derepression.	5.2178e-31
NZ_CP041616.1\|WP_143781920.1\|457847_458891_-\|HAD-hydrolase-family-protein	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.11501e-49
NZ_CP041616.1\|WP_143781937.1\|476549_477017_+\|GyrI-like-domain-containing-protein	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	1.22187e-17
NZ_CP041616.1\|WP_143781935.1\|474395_475805_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP041616.1\|WP_143781926.1\|463735_463981_-\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	4.1371e-11
NZ_CP041616.1\|WP_143781931.1\|470475_471204_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.541e-13
NZ_CP041616.1\|WP_143781921.1\|458790_459600_+\|RNA-methyltransferase	gnl\|CDD\|349977	cd18104, SpoU-like_RNA-MTase, SAM-dependent RNA methylase related to SpoU-TrmH. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.53213e-70
NZ_CP041616.1\|WP_143781922.1\|459704_460340_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.55407e-33
NZ_CP041616.1\|WP_165699978.1\|465921_466863_-\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.76557e-05
NZ_CP041616.1\|WP_143781934.1\|473124_474216_-\|tartrate-dehydrogenase	gnl\|CDD\|273963	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively. [Energy metabolism, Other].	0
NZ_CP041616.1\|WP_143781930.1\|467942_470474_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
NZ_CP041616.1\|WP_143781923.1\|460597_461200_+\|hypothetical-protein	gnl\|CDD\|370266	pfam09056, Phospholip_A2_3, Prokaryotic phospholipase A2. The prokaryotic phospholipase A2 domain is predominantly found in bacterial and fungal phospholipases, as well as various hypothetical and putative proteins. It enables the liberation of fatty acids and lysophospholipid by hydrolysing the 2-ester bond of 1,2-diacyl-3-sn-phosphoglycerides. The domain adopts an alpha-helical secondary structure, consisting of five alpha-helices and two helical segments.	3.99238e-05
NZ_CP041616.1\|WP_143781933.1\|472271_473075_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.23574e-06
NZ_CP041616.1\|WP_143781929.1\|467100_467862_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.30962e-135
NZ_CP041616.1\|WP_143781927.1\|465048_465591_-\|barstar-family-protein	gnl\|CDD\|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	5.75077e-10
NZ_CP041616.1\|WP_143781925.1\|461436_463656_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP041616.1|WP_143781927.1|465048_465591_-|barstar-family-protein
MPTGRASHPIGVRSVLPALGGQGVLLAAAADADRIRHALADAGFAIVEADLSARDQRADPTTLRTAQATIAEALYLPETAGRNLDAMVDSLRDLATWWPEDERILLLLHSAEALVQSDLPGWHTLTEILRDASRDLWQGGAPGDRVFETVALVDRHGVPSLPTEPLANAVPDGPDLEDGA
>NZ_CP041616.1|WP_143784895.1|464404_464848_-|ribonuclease
MDDRPAADPTDTDPTDTDPTDTDPTDTDPTDDDQSEQPELGAPGIPACDLLDLPATALPVIEDIEAGGPYDYPRNDGVHFQNREGILPDEDRDFYREFTVETPGLDHRGPRRIVTGGFEETDPEHWYFTEDHYESFCEFDPDRAEVG
>NZ_CP041616.1|WP_143784894.1|464022_464304_-|metal-sensing-transcriptional-repressor
MNGYTGSKEDYLKRLARIEGQVRGIAKMVDNDTYCIDILTQVSAATKALQAVSLGLLEDHIGHCVVDAARESDDAAQVKVTEASAAIARLVRS
>NZ_CP041616.1|WP_143781926.1|463735_463981_-|heavy-metal-associated-domain-containing-protein
MEYRDTSTQNQVTRIAVNGMTCGHCADSVTEELKEIEGVLSVRIDQIVKDGSTDVFVESDRPLDLPAARAAVEEAGYTASV
>NZ_CP041616.1|WP_143781925.1|461436_463656_-|cadmium-translocating-P-type-ATPase
MSTTTKPLPPTHETDVQHVDLAITGMTCASCSARIERKLNKIEGVEASVNLATEKASVSYPAALSVADLVATVEKTGYGATPLAQDRASRAPAMTHDVVDQTSLRLRMVVASVLAAVVAILHMVPPVADAMGTAGMWAQFVLTLPVYLWAAWPFHRAAIINARHLSSTMDTLVSVGTTAAMGWSVVALLTGFSHDMYFEVVAVVTAFLLIGRYIEARAKAQGRSALQSLMELGAKDVAVLRHETGSGAWTEHRIPVDDLRSGDRFVVRPGEKVATDGRIVDGSSSIDASMVTGESMPVEVSAGDPVTGATVNGHGRLVVEATRVGAETTLARITQLVEQAQTGKAPVQRLADRISAVFVPIVLVIAVLTFLIWLLTSNPVTDGLAAAVAVLIIACPCALGLATPTALLTGTGRGAELGILIKGPQILESTRRVDTVVLDKTGTLTTGEPVLTDVLTVGNLPNEAALKAAASVEAGSEHPIAQAIVQGARDRGIELKPLTNFVNLPGQGARAGVGGTEVTVGKPDLFDQVPDQLLAELAAGRGTTVLVGWEGTARAAITVADTPRTSSAAAVARLRELGLTPYLLTGDNEHTARRVAREVGIDETHVDAGVLPQDKFDHIRALQEQGKVVAMVGDGVNDAAALAQADLGMAMGSGTDVAAESADIVLMRSDVDTVADAIGLSRKTLRVIQQNLVWAFGYNTLAIPLAALGLLTPMIAGGAMAMSSVLVVLNSLRLKAYKR
>NZ_CP041616.1|WP_143781924.1|461209_461449_+|hypothetical-protein
MSPARWAVGLARVRFDFDRQNARGVELHRGASPRHTLDRLRAVAHRTSTPPGGRDSRIVEEVVHREDTGAGVGELRQRL
>NZ_CP041616.1|WP_143781923.1|460597_461200_+|hypothetical-protein
MISRRFAALLLCLVALLTSGGLTLAGTGLEAGDEQTEAAVAVRALVSGTTQEALAAVPGDFAAVRGYQPVTEHGQLVRADGGCSSPVPLPEEFEPACRQHDYGYDLLRYADQSGRPLGRWARGAIDDRLADQLRDVCGAGPEQHSCRRMAIVAVTGVELNSRRQGDGVPEESVLTNVALASSAVGLLGLSVALPRRRRSG
>NZ_CP041616.1|WP_143781922.1|459704_460340_+|VOC-family-protein
MRIDHVSYAASPEGLRATAQTLGDRLGITPRDGGVHPRFGTRNVILPLAGDRYIEVVEVLDHPASDKAPFGQAVRARSALGGGWMAWVIAVEDLSDVEERLGRRSVEGQRHTPEGVELHWRQIGIRGLIADPQLPFFIQWSTMAHHPSRLQASAVNLTGLHISGEPARVRDWLGITERGNWEQGVDFTFEQHELAALESVTFEGPEGPVTI
>NZ_CP041616.1|WP_143781921.1|458790_459600_+|RNA-methyltransferase
MDELLITSPANPRLKALAALRRRRVREAEGRTLIEGFEELDLALGAGVVPRVVFYCPDLMADPDAQARVVHDVAGRGAKVVRLGRAAFEKVAYREGPDGFLAVVDTVTRNISDLEVPDDALVLLCEHVEKPGNLGAMLRTADAAGVHAVIAADPVTDWGNPNLVRASKGTVFSVPVVSDSTGAALSYLAARGIALVAATPDTDVEYTDIDYTGPVALAVGAEKTGLSDQVLHAATHRVRIPMVGQANSLNVSTSAAIITYEAVRQRRAR
>NZ_CP041616.1|WP_143781920.1|457847_458891_-|HAD-hydrolase-family-protein
MRVRPSASRTRRRRRAASAFSRGFAGEVISNSSIAGQHLRLGQRSRHTSLPPVRPDPGSVGQVTRWGAAEDLLIALDVDGTILHHDGHLTERVAASIVALRDAGAHIVIATGRSVVATTPILEELGLVREGGLAVCSNGAITIGLDPAYDDGYRILEAVTFDPRPAVELLRQARPDALVAVEEVGVGFKLSAPFPDGELQGNLRVVDHDELVASPATRVTFRDPNGSAESFSDLVDEIGLHGVNYAVGFTAWLDLAPEGVSKGSALEQIRRQLGVEPWCTIAVGDQRNDLEMLRWAARGVAMGQAPPEVVAAADETTSPVEEDGLAVLLEQVAAELSSNSATNTKEH
>NZ_CP041616.1|WP_165699978.1|465921_466863_-|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein
MHPDIATLLASQGGVAATSQLTTMGITRYVLRRLIVHKELIRLPRGIVADPAVWEGAAPWDRHALRAQGLMMGPAGAPGSPLALSHHSALSLCGAASHGVDDRIHIVRTDGRRGRSDAFVQCHSPVAEDQVHERDGVRMVLPELAVLQTAATFGVESGLVSADSCLRDGQVTPDKLQQALDRGGFGNGTSAARTVTKHASGLAESAGESRCRWLFVMLGLPTPLAQAIIRDHAGQFIARVDFLFEDERTVIEFDGRVKYTNPRVLFEEKQREDFLRTLGYIVVRLVWADLAHPDRVRARILEAFSISARHRAS
>NZ_CP041616.1|WP_143781929.1|467100_467862_-|purine-nucleoside-phosphorylase
MSTHIAAAPGQVAPRILLPGDPLRAKWIAENFLEDADCYNEVRGMLGFTGTYRGERVSVQGTGMGQPSLSIYVNELITEYAVQQLVRVGSCGALTERLALRDVVIAQAAATDSSMNSHRFQGFHYPATADFALLRHAAEAAEAPAKGAGSGVQTQGGASSRHLVGTIFSSDSFYHDRPDLTQRLTEFGVLAVEMEAAELYTLAAKHDRAALAICTVSDHIVTGAETTAQEREQTFGAMVTMALDAMLATPLPE
>NZ_CP041616.1|WP_143781930.1|467942_470474_+|ATP-binding-cassette-domain-containing-protein
MVHVPSLSKNGCEDGRVSIHVHGARLHNLRDVDVEIPRNQLVAITGVSGSGKSSLAFGTIHGEAQRRYFDSVAPFARRLIHTAIDPQVRDITGLPPAVAIEQRPAAPSSRSSVGTITTTGNTLRMLWSRSGDYPDDVEPMDSDHFSPNTAVGACPECSGLGVVHRPTEASMVPDPSLSIAEGAIAAWPGAWLGKNYRDIIATLGHDIDAPWRKLPQETRDWILFTDEQPVVTVVPTRDADRINRPYQGTYSSAARYVLRTLSETKSATQRRRALRFVETTPCAVCHGRRLNPDALRVTWQDLAIDEAQHLPVGDLLPILRRRLAELPHGDQPLHAERSRAVVAAERLLLTDLVSRLDVLVTLGLGHLDLARPTPSVSTGELQRLRLATALRSGLYGVVYVLDEPSAGLHPQDVVPLLEVLRGLVEAGNSVLVVEHDMAVVGACDWVVDVGPGAGSQGGQVLYSGLLDGLAEVAGSVTAHYLHDPVHPADIREAATRDPSGWLTVTGIERHNLHGVAVEVPLGALTVVTGVSGSGKTSLLHGILEAVGDRLARVEITEEESDGEYSDGQGQGAGLAGEGGEVVVAAEASATGTGAPTRVVQVTQRPIGRTPRSNLATYTGLFDHVRKLFAATRTARERGFTAGRFSFNTAAGRCETCQGEGAVSVELLFLPGTYSTCPTCGGARYNPETLEVTWSGRSIADVLALTVTDALEVFADEQPVRRALAALEALGLGYLSLGQSATELSGGEAQRIKLATELQKERRSPTLYLMDEPTSGLHPADVHRLLATLHALVDAGHTVVLVEHDPAALATADWVMELGPGSGEAGGVVMTAGLVAAAGSESAT
>NZ_CP041616.1|WP_143781931.1|470475_471204_-|TetR-family-transcriptional-regulator
MTPAPRSRQDLQQETRDTLVSAARAVFAESGYHAATLEAIAREAGYSKGAVYSNFAGKAELFLAVMDANMEAAVIAEGWDLKDPAAEEAADCEPLPEQFDEAILGMGLATLEFVAAAARDPELRPQLASRLTQVIDGYAGTATRAHPGEEDPLSVTERGALLAALDQGTALLTLGGSELIDQRVLRTGMQRLLVPGPDEVPRAGERGAAALHDDTVRQRLATAARAGGWDRTGPTGRGGVGR
>NZ_CP041616.1|WP_143781932.1|471289_472279_+|ATP-binding-cassette-domain-containing-protein
MTDAILHVAGLTRRFGSVLANDDVSLHVRPGDVVGLLGHNGAGKTTLVSQLVGLLRPHAGTIQIGETDAVADPAAARRHVALQPQAQAPIDGLTPRQAIELASRIRGLTARDSRAAATRLADELDLGPWLDRRALPEGGGLSGGIRRLTSFAMAVAAPMPLLVLDEPTNDIDAARRRLLWDAVRRRGDEGSGVLVVTHNVAEAERIVDDLVVLHHGRVVAAGSPARLRGTQDNDLRLDLQLQPDGQDPTAQPQTVPVTVRRRVRAGRRVLLTVPTAQAATAVTWATTLRDQEHIDGFALGPVTLEDTYLALTTQPRDTGSEHIQEASHV
>NZ_CP041616.1|WP_143781933.1|472271_473075_+|ABC-transporter-permease
MSDETLTGTVRSRPTTLPAPSAAGALTTYVTLVRWTLSQIGAMLPLIIVVQALLAAGIIVGFGFLIPDMDAATALFLSTGAPTVLLLTLGLVMVPQGVARARTDGTFHYMRSMPVWRPLLLAADLTVWVIVALPSVAVAVLVALWRYDISLSLDWPVLLSGTVLVTLTAAAVGYAIAVTLPPLLAQLVTQVLVFFVLLFSPITFPLEQLPQWFQAVHDVLPARPGADLVRAGLASDAFAASGRDLLVLAIWCVGGLAISLRALVRRG
>NZ_CP041616.1|WP_143781934.1|473124_474216_-|tartrate-dehydrogenase
MPASTHRIAVIAGDGIGTEVMPEGLKVLRRVADTFDVGLEFEEFDWSSADYYQRTGAMLPEDWKAQLVGFDAIYFGAVGWPDVVPDHVSLWGSLLQFRREFDQYVNLRPVRLMPGVRSPLADKKPGDIDMMIVRENTEGEYSSVGGHMFPGTEREVVIQETVMTRIGVDRVLRYAFELAQTRPRKKLTSATKSNGIAITMPFWDERVKAVHEDYPEIEVDSYHIDILTARFVLSPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANINPTREHPSLFEPVHGSAPDIAGQGIANPIGQIWCGAMMLAHLGEAAAAEATERAIEGGLTQGSADGTATPDLGGTGTTQSFGDLIADLVSTPV
>NZ_CP041616.1|WP_143781935.1|474395_475805_-|adenylosuccinate-lyase
MPSLADLTPPIALGSLDGRYRRAVAPLVDHLSEPALNRTRLHVEIEWLIHLTTGEVVPGAGTLSQDEARSLRGLVEEFDTAAIDELAAIEAETVHDVKAIEYFLKRRLTDRLDNRGDLAELVHFACTSEDINNLSYALMVQGAVQRVWLPRATQLVEQVSGMARELADIPLLAHTHGQPATPTTMGKELAVLAWRLSRQLARVAGAEYLGKLNGATGTYGAHLAAVPDADWQQISHDFVTGLGLTWNPLTTQIESHDWQAEVYADIARFNRVLHNLCTDVWSYISMGYFAQVRGQGTVGSSTMPHKVNPIRFENAEANLEVSNALLDVLASTLVTSRLQRDLTDSSMQRNIGTALGHSLLALDNVSRGLAGLDAAPERMAADLDANWEVLAEPIQSAMRALAAAGHPGMDNPYERLKELTRGRRIGQAELVEFVRGLGLPSEVEERLAAMTPVSYVGIAPDLVAHLRAE
>NZ_CP041616.1|WP_143781936.1|475968_476319_-|hypothetical-protein
MDDWLMWLLLAILVLLVLGAVWAFLNSKNKSRHREEAGHIRERATGGERYAEDREATARQAQQEADEAKEQARRVQEEADRREAQARAATQEARDHRDRVTDQYLEADEIDPDVKK
>NZ_CP041616.1|WP_143781937.1|476549_477017_+|GyrI-like-domain-containing-protein
MTLQDPEIITHAAQATAVVRGSVGADEIAAFYDSAYSAVVQALGRQGVAPAGAALGYYLSIPTERFELEAGFPTAAPIADDGDVLASELPGGEVAHAVHAGGFESLGDSWGALMQWVGEQGRTADGRMWEVYVTEPSPETDPATLRTELYLLLTG

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Crispr_ID: NZ_CP041616_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_2

742446-742540

Orphan

Consensus_repeat	Method
CTGGATCAAGCAGGGCGCGACGCTGACCGTCGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_2

>merge|NZ_CP041616|2|742446-742540|CRISPRCasFinder
CTGGATCAAGCAGGGCGCGACGCTGACCGTCGACGGGGACACCTGTGGCCTGCCCCGGGACTGGATCAAGCAGGGCGCGACGCTGACCGTCGACG

>NZ_CP041616|2|2|742446-742540|CRISPRCasFinder
CTGGATCAAGCAGGGCGCGACGCTGACCGTCGACG	GGGACACCTGTGGCCTGCCCCGGGA
CTGGATCAAGCAGGGCGCGACGCTGACCGTCGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143784921.1\|742903_743800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143782149.1\|736741_738370_-\|DUF3520-domain-containing-protein	unknown	unknown	gnl\|CDD\|238742
NZ_CP041616.1\|WP_143782155.1\|744360_745275_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_CP041616.1\|WP_143782160.1\|750328_750529_-\|DUF3073-family-protein	unknown	unknown	gnl\|CDD\|378620
NZ_CP041616.1\|WP_143782156.1\|745521_747120_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236113
NZ_CP041616.1\|WP_143782146.1\|732888_733959_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|236060
NZ_CP041616.1\|WP_143782158.1\|748220_749657_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP041616.1\|WP_143782148.1\|734575_734878_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|227737
NZ_CP041616.1\|WP_143782145.1\|732313_732781_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176854
NZ_CP041616.1\|WP_143782147.1\|734019_734544_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379163
NZ_CP041616.1\|WP_143782164.1\|752175_753249_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP041616.1\|WP_143782150.1\|738876_739923_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176247
NZ_CP041616.1\|WP_143782154.1\|744118_744355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143782151.1\|739965_740640_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379082
NZ_CP041616.1\|WP_143782153.1\|742040_742406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380033
NZ_CP041616.1\|WP_143782162.1\|751523_752156_+\|DUF1949-domain-containing-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP041616.1\|WP_143782152.1\|740798_742037_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_CP041616.1\|WP_165700006.1\|734901_736533_+\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP041616.1\|WP_143782159.1\|749629_750166_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_165700007.1\|750778_751480_-\|copper-resistance-protein-CopC	unknown	unknown	gnl\|CDD\|377255

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143782149.1\|736741_738370_-\|DUF3520-domain-containing-protein	gnl\|CDD\|238742	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.	5.63738e-55
NZ_CP041616.1\|WP_143782155.1\|744360_745275_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	6.51063e-39
NZ_CP041616.1\|WP_143782160.1\|750328_750529_-\|DUF3073-family-protein	gnl\|CDD\|378620	pfam11273, DUF3073, Protein of unknown function (DUF3073). This family of proteins with unknown function appears to be restricted to Actinobacteria.	4.62465e-20
NZ_CP041616.1\|WP_143782156.1\|745521_747120_+\|amidophosphoribosyltransferase	gnl\|CDD\|236113	PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.	0
NZ_CP041616.1\|WP_143782146.1\|732888_733959_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|236060	PRK07581, PRK07581, hypothetical protein; Validated.	0
NZ_CP041616.1\|WP_143782158.1\|748220_749657_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	1.12341e-179
NZ_CP041616.1\|WP_143782148.1\|734575_734878_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|227737	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription].	4.51982e-06
NZ_CP041616.1\|WP_143782145.1\|732313_732781_-\|SRPBCC-family-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.66466e-13
NZ_CP041616.1\|WP_143782147.1\|734019_734544_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	1.24092e-10
NZ_CP041616.1\|WP_143782150.1\|738876_739923_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176247	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP041616.1\|WP_165700007.1\|750778_751480_-\|copper-resistance-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	2.19387e-22
NZ_CP041616.1\|WP_143782151.1\|739965_740640_-\|hypothetical-protein	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	0.00119884
NZ_CP041616.1\|WP_143782153.1\|742040_742406_+\|hypothetical-protein	gnl\|CDD\|380033	pfam17844, SCP_3, Bacterial SCP ortholog. This domain is found in MSMEG_5817 gene product from M. smegmatis. It has been shown to be vital for mycobacterial survival within host macrophages. Crystal structure revealed a Rossmann-like fold alpha/beta two-layer sandwich forming a highly hydrophobic interface cavity and with high structural homology to the SCP family. Hence, it has been suggested that this domain may be involved in the interaction of apolar ligands through its hydrophobic cavity. Alanine-scanning mutagenesis of the hydrophobic cavity of MSMEG_5817 protein demonstrated that the conserved Val82 residue plays an important role in ligand binding.	4.81342e-54
NZ_CP041616.1\|WP_143782162.1\|751523_752156_+\|DUF1949-domain-containing-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	9.41653e-58
NZ_CP041616.1\|WP_143782152.1\|740798_742037_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_CP041616.1\|WP_165700006.1\|734901_736533_+\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP041616.1\|WP_143782164.1\|752175_753249_+\|UPF0104-family-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	3.87244e-12

>NZ_CP041616.1|WP_143782153.1|742040_742406_+|hypothetical-protein
MPPRRRIAPDQGEQALSVWRTAPDQAPRQVVATAVRYTLEELGARAPGRSVEVRVPPFGAVQCIEGPRHTRGTPTNVIETDGQTWLRLVTGASTWEQERDTGAVRASGQRADLSEWLPLGL
>NZ_CP041616.1|WP_143782152.1|740798_742037_+|arginine-deiminase
MPLHVGSEVGRLRQVIVHRPGLEMHRLTPDNKERYLFDEILWVERAQEEHDEFVRVMRERDITVHHFHQLLEETVAIPEARRQILSQSLDERHLGPFAAYEMHELFDRMGDADLARFLVGGITKAEVLERMDAPRSVVISAMDEHEALLAPLPNHLFTRDTSAWLYSGVTVNSMHKKARRRETVHYEAIYQWHPMFRDVGMDWWTEGVEAGPATAEGGDILVLGNKVLLVGISERTTTQGIERLAQRTLASDQIDTIIALDMPKARAVMHLDTVMTMLDEQTFTKYTGLPDLTSYTITSNGAGDAALPDLRIRANDPADMMQVIGEAMGIGTPRVVAADQDPRAAAREQWDDGCNVLALEPGVVVAYQRNTVTNDYLRGLGVEVLEIAGQELGRGRGGPRCMSCPIERDPLG
>NZ_CP041616.1|WP_143782151.1|739965_740640_-|hypothetical-protein
MQLVVIFGPPAVGKMTIGRMIAERSEFRLFHNHAMIEPLLEVFDYGTAPFRHLLRSLRQQVGAEAAASGTDLILTYVWGLESQDDVEEIAEQIAPYVDREAVVSFVELAAGLDTRLERNRTEHRLAEKRSKRDLDWSDANVREMERFVMNTDGERGPGPTATGDGLPGAAPDGRPGATADDLPDATADDLPGVQLLSQHRHFRLDTSELTPEQSAERILEWLRT
>NZ_CP041616.1|WP_143782150.1|738876_739923_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MDATVLHAPGDIRLEQVPDPQIMAPTDAVVRVVASCVCGSDLWPYRGISRVSRPRRIGHEFIGVVEEVGGEVSTVRPGDFVITPFLWSDNTCAHCTAGMQSACANGGGFGGPDRDGNMVDGCQGEYVRVPLADGTLVTTPGQPDEALLPSLLTLTDVMATGWHAAVSARVRPGATVVIVGDGAVGLCGVLSAAQQGAGRVIAMSRHADRQAVATEFGATDIVAERGPEGVARIMELTDGIGADAVLECVGTKESMEQAFASARPGSMVGFVGVPHGAEAPMGQMFNRNVGLAGGMAPVRGYLDELLPLVLEGQINPGRVFDSTVPLAQVADAYRAMDERAAIKVMLRP
>NZ_CP041616.1|WP_143782149.1|736741_738370_-|DUF3520-domain-containing-protein
MKTTKLLAMLLVVGLGATACSGETEPETPTEGTSGVDTDAARDYFEDYENSADMDGAAGATAPVAVDSSESGAEPTPMPPPPPPEPGEDNTFTDVGETVWVSAQESPLSTFALDVDTGSYRVAHGMAAEGLAPEPDSIRVEEWVNSFEYADSAPEGNALGLQVETGAAPRAEEGTALVRVGISSLEIADEDRPQANITFVIDTSGSMDIRERLGLVKSSLALLAESLNPDDTIAIVIYGDDASPVLEPTKVSDRDTIMGAIDDLQAGGSTNMEAGLRLGYQQARDAHVEDGINVVILASDGVANVGMTEGDTLAEEIAGAGEEGIHLVTVGFGMGNYNDTLMEQLANQGDGFYAYVDTFEEAEQLFVEDLTQTLTVVARDAKSQVEFDPEFVESYRLIGYQNRALEDDEFRDDTVDAGEIGAGHRVSALYELVPTDAVSDGTEVGEARLRWADPDTAETIEINAPITWSQDEASETLRVAALVADSAELLKGNSIVSERGFTLGDLREEAEALAGSDVAGIEELRDLLDEDLQAPVTDEDRD
>NZ_CP041616.1|WP_165700006.1|734901_736533_+|DUF853-family-protein
MPDGPPRGPAVTRVLPVTENQLDQIRAGYSFEGPSITLGATLQDGTPVPDAPVRLPLASMNRHGLVAGATGTGKTVTLQVMAEQLSAEGVPVFLADIKGDLTGLVTPAGDNPKVTERMTGLAQEWAGTAYPVEFFSLGGQGKGIPIRATITGFGPILLSKVLGLNDTQESSLGLIFHYAAQAGLALLDIKDLRAVVQHLLSDEGKAELKALGGLSTATAGVILRELIAFEAQGADAFFGEPEFDTADLLRTAEDGRGIISCLELPGVQDKPALFSTFLMWLLADLFQDLPEVGNLDKPKLVFFFDEAHLLFKDASKAFLESIEQAVRLIRSKGVGVFFVTQVPKDVPESVLAQLGNRVQHALRAFTPSDAKALKATAKTFPISDYDLEEVLTQLGTGEAVVTVLSDRGAPTPVAWTLLRAPQGTIGPSPEATVDGVISASPLTSRYAEELDRESAYEILAAKMEAGAKAAEEAAAAEAAAGASEAAQKEAAAAEKAARKREKEDPSVVDQVVGSSAFKSMLRSAGTVIGREISRSIFGTGRRR
>NZ_CP041616.1|WP_143782148.1|734575_734878_-|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MIFKGVGDGQPYPPHHLEDWSHIPPQMVRLDELVTTKATLDLQHLLAADSTFYGDIFCHVVEYRGLKYLEDGLHRALRAALAGRAFVHGRVLVVPDPAAR
>NZ_CP041616.1|WP_143782147.1|734019_734544_-|LytR-family-transcriptional-regulator
MGYVRTAGMSTAARRRRRRAALVLSALLLLLVGIGGYAVAYYQGWLPEGDGVAGDADATTATAEVPAVLAEDVTVNVYNASGAAGIAGNTAKALATHGFDIDAVDNAPSGTETPAVAEIHHGVEGLQDAELLATYVEGAVLVEDARQIDEIDLYIGTDFVPVESAPDDGATSTG
>NZ_CP041616.1|WP_143782146.1|732888_733959_+|alpha/beta-fold-hydrolase
MALDNPFYTPEMQGAYELHSLGRFELEDGGVIPDLQLAVATYGQLNEAKDNVILIPTWFSGTHQTWELVYIGPGRALDPEKYFIIVVNQIGNGLSTSPHNTDGPIAMSQFPNVRIGDDVRAQEQLLREVFGIEQLALVVGGSMGAQQTWEWAVRFPDKVLRAAPIAGTAQNTPHDFLFTQTLVDAITSDPGFNGGDYASHADVVDGLSRHADIWAVMGLSTEFWRTEFWRGIEIPDVTWDTAVEFKDRFLRSVFTALDPNSLLVQAWKWQRGDVARNTDGDLAAALGRITATMFVMPIDEDMFFPPRDCAAECEQVSGAQLRPLHSVAGHFGLFGFEPDYLESVDTILRELLETSV
>NZ_CP041616.1|WP_143782145.1|732313_732781_-|SRPBCC-family-protein
MDQIVVSKVIGAPPCRVWEVLTDVRRAAETLSGVTSVQTLTDGPYAEGTRWRETRTIFGRSSTEEMWVTLADPLRETEVRASSGGADYVTTFVLVPVSDEATELSVTFSAELSTPSAMQKLGMKVFGGMATKATRKALEQDLADIATAAEGRRRQ
>NZ_CP041616.1|WP_143784921.1|742903_743800_+|hypothetical-protein
MAERIAQPLDGVATIAMLLEAGLTRGQIQGEIERGVWTKVGRHTVRVTATGDPQRAGWWTALWESGRQSVLDGATALIAAGLTSWTERVIHVSVPNRATVRALDGVVHHRLRRIGPVVTAGLRRTKPEVAVIRAAQWERSDRAAATIVAMTVQQRLASPASVLSRWSGIHYSTRRALLHDVIQDVCNGAHSLSELDFARECRRRGLPEPKRQVVRMGPHGRVYLDVFWDGPGLHIEIQGAHHYQGLGVISDSLRFNDVRLQSRDLTTLQVPVLGLRTQPEAFFAQIQRALAAGRVDSR
>NZ_CP041616.1|WP_143782154.1|744118_744355_-|hypothetical-protein
MTTPQRRPVFRRPRMVPFLATGALIGFFLGAVLAYFGPDAPMASTGQETLALAIPFGLIGGLLGGALYLLAERFSKRR
>NZ_CP041616.1|WP_143782155.1|744360_745275_-|LLM-class-flavin-dependent-oxidoreductase
MRHGVCILPEYPWAEAQHLWRRAEELGFDHAWTYDHLVWGGLPDAPWHSTVGTLTAAAMVTERIQLGTLVSSPNFRHPVTLARDVVTLDDISGGRMLLGVGAGGDVDAGILGDSLTRGERSRRFREFVPLLQRSLREDHVDHTGEFYSVVNGRNLTPSQAPLLVAADGPKAMALAVEYADGWVTTGPASGDWAERDAVEQWWRGVADAAQRFTDAEASVHESASGHDAKAGAGSAQAAGGRRLDRYLTLDASGPVALSSVSFLTEQVGRAAELGFTDVIVHWPRSEAPYAADLGVLERYLDVAS
>NZ_CP041616.1|WP_143782156.1|745521_747120_+|amidophosphoribosyltransferase
MARADGRLSHDLMPDEKGPQDACGVFGVWAPGEEVAKLTYYGLYALQHRGQEAAGIATSDGRSLLVYKDVGLVSQVFDESSLASLRGHLAVGHCRYSTTGRNSWENAQPTLGGTEDQTVALAHNGNLINTAELRDRLAEFHGGDLRNAPGEVRRGNTTDTALVTGLLTADPDLSLEASALQVLPTLRGAFSLVFCDEQTLYAARDPQGVRPLVLGRLERGWVVSSETAGLDIVGASFVREVEPGELIAIDRDGLRSQRFAETDRKGCVFEYVYLARPDTTLNGRGVYESRVEMGRTLAREHPVEADMVMPTPESGTPAAIGYAEASGIPYGNGLVKNAYVGRTFIAPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEIHVRISSPPVRWPCFYGIDFATRAELIATGLGTEEIRQSIGADSLGYISEEGMVAATRQPREQLCTACFSGVYPIELPASDKLGKDVLELEFPGGEELAAPAERHTPLHVRAVDVDGVAVGAHGGAADAVSRP
>NZ_CP041616.1|WP_143782158.1|748220_749657_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSGRRARSASTPRPPSISWSSGSPPGRRQQRPATTQGTTLERSGLATPERSGLAAPERSGPGAPETAPGTNQRPAPETARRPRGDALGARHTLVPTARSHTKGRPVSDQPITYASAGVDVEAGDRAVELMKASVAAAQRPEVIGGLGGFAGMFDASALRGMQRPVLATSTDGVGTKVAIAQAMDVHDTIGQDLVGMVVDDIVVSGAEPLFMTDYIACGKVVPERIAAIVSGIARGCELAGVALVGGETAEHPGLLAESEYDVAGAATGVVEYDDVLGPQRVREGDAVIALASSGLHSNGYSLVRRVIAAAGWSWERHVEDFGRTLGEEMLEPTRIYTRMLLDLIRTPGLDVHALSHVTGGGLAANLGRVLPVGALATVERSTWTPPAVFSVVQELGAVPLEDLERTLNQGVGFVAVLPGDQADAAVARSAELGVPAWVLGEVQADTGETGEGIVRGAKGVDGGAVRVTGAYSGGATAT
>NZ_CP041616.1|WP_143782159.1|749629_750166_-|hypothetical-protein
MKAWHAATWEDPDDAATTKRRFSWGWLWLLLIPAALILFSLARFNDYWQYDDWTVATLHCDEPLTADPAWSDLQAAGCEQAPIPGAEVTLLDVGKPAQEFETDGTTWTFRNMPSAFSTMGLNVFLEEPAGRVFIVDASTTPPTVHREMTPSDVERTVFARNFGTVETTNFYVAVAPPE
>NZ_CP041616.1|WP_143782160.1|750328_750529_-|DUF3073-family-protein
MGRGRAKAKQTKVARRLKYYSPETDLNALARELGADGKPVTAHAAESGEDELEEDDAYDRWASSDN
>NZ_CP041616.1|WP_165700007.1|750778_751480_-|copper-resistance-protein-CopC
MFTLTHRGRRPGGRAVLGTLLLSLWLTLLAIPASAHDSLSGSSPADGEVLTEVPSALELTYTGDISDLGVQFMVTGPDDRDVVLGTPEVDGNTVTQELVEELADGDYEVAWRVTSSDGHPISGTYVFTIEASTAAEDPAQTDPPAETGTETDSATPTETPTDATAPPAPADDATQTTAPAATSAPDAGAETVSDAAASTPSESSSGIPAWGWLVAGLAAVGLVACGFLAFRRN
>NZ_CP041616.1|WP_143782162.1|751523_752156_+|DUF1949-domain-containing-protein
MSRTAYRTVRGPVTATIEERRSVFECWLRRVDSEEAARAVVEEARTTHWDARHHCSAWVLGPEGDLTRSNDDGEPSGTAGIPMLEALSHSGFSDVVAVVTRWFGGTLLGTGGLVRAYGDAVRTALAEAVPQARELRQLGSLAVGHADAGRVEHELRAGGVLVTDADYGEFVTLHLAVPVGERAAVTEEVARLTGGGAEFVLGETEWVDRT
>NZ_CP041616.1|WP_143782164.1|752175_753249_+|UPF0104-family-protein
MATAGRSWRSWARPARGVLSGALLIVLIAFVLPTVTGSDWRSTFETLSLVRLWHLAGLTALWLVGVWAYTYVMAACLPGLRKTQALGLYMVGSAVSNLLPVGGAVGVAVTWSMMRAYGHSHAAIGIYTVVTGLWNILARLALPIAGLGALLLAGSQLNDTFLAPALVGVVFAVLLLAVAVTALVHDGAGRWLSQITGRVGARLSELVRRPVPKDLGERLAALLATARDLLRTGRVPITVGMLAYLVLQGVLMAACFAVVGSDLGWAEVTAGYAIGRMLTTIILTPGGTGFTETGTAAVLVALGGDPTTTMAGVLLFSFFTFFCEIPGGAIAYPWHVRQTRPGRAWSMESEGDLSRDA

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Crispr_ID: NZ_CP041616_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_3

949613-949720

Orphan

Consensus_repeat	Method
TGTGCGACATGGGTGCCCCAGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_3

>merge|NZ_CP041616|3|949613-949720|CRISPRCasFinder
TGTGCGACATGGGTGCCCCAGCGCCCAACACGCCACAGCGATAGCGGAACTGTGCGCGACACGCGGCAGCGGTCGCGGAGCTGTGTGCGACATGGGTGCCCCAGCGCC

>NZ_CP041616|3|3|949613-949720|CRISPRCasFinder
TGTGCGACATGGGTGCCCCAGCGCC	CAACACGCCACAGCGATAGCGGAACTGTGCGCGACACGCGGCAGCGGTCGCGGAGCTG
TGTGCGACATGGGTGCCCCAGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143782346.1\|957535_958300_-\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP041616.1\|WP_143782337.1\|946446_948192_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP041616.1\|WP_143782331.1\|942903_943089_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376730
NZ_CP041616.1\|WP_143782340.1\|949795_951037_-\|DUF4032-domain-containing-protein	unknown	unknown	gnl\|CDD\|379077
NZ_CP041616.1\|WP_143782345.1\|956507_957512_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP041616.1\|WP_143782341.1\|951062_952145_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP041616.1\|WP_143782343.1\|953937_955539_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|236816
NZ_CP041616.1\|WP_143782334.1\|944165_944792_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP041616.1\|WP_143782332.1\|943092_943605_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|376730
NZ_CP041616.1\|WP_143782349.1\|962232_962973_+\|transglycosylase-family-protein	unknown	unknown	gnl\|CDD\|369056
NZ_CP041616.1\|WP_143782338.1\|948195_949146_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NZ_CP041616.1\|WP_143782342.1\|952454_953825_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270304
NZ_CP041616.1\|WP_165699938.1\|946065_946479_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143782333.1\|943666_944122_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176900
NZ_CP041616.1\|WP_165700017.1\|949147_949603_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240043
NZ_CP041616.1\|WP_165700016.1\|944788_946048_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP041616.1\|WP_165700018.1\|958296_959751_-\|trehalose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|340820
NZ_CP041616.1\|WP_143782348.1\|959940_961896_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP041616.1\|WP_143782344.1\|955540_956482_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226354
NZ_CP041616.1\|WP_143782330.1\|942508_942832_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143782346.1\|957535_958300_-\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.21452e-43
NZ_CP041616.1\|WP_143782337.1\|946446_948192_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP041616.1\|WP_143782341.1\|951062_952145_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP041616.1\|WP_143782340.1\|949795_951037_-\|DUF4032-domain-containing-protein	gnl\|CDD\|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	1.14413e-90
NZ_CP041616.1\|WP_143782345.1\|956507_957512_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.47787e-94
NZ_CP041616.1\|WP_143782331.1\|942903_943089_+\|hypothetical-protein	gnl\|CDD\|376730	pfam02096, 60KD_IMP, 60Kd inner membrane protein.	4.78807e-06
NZ_CP041616.1\|WP_143782334.1\|944165_944792_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.18491e-54
NZ_CP041616.1\|WP_143782332.1\|943092_943605_+\|membrane-protein-insertase-YidC	gnl\|CDD\|376730	pfam02096, 60KD_IMP, 60Kd inner membrane protein.	3.75524e-25
NZ_CP041616.1\|WP_143782349.1\|962232_962973_+\|transglycosylase-family-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	2.454e-34
NZ_CP041616.1\|WP_143782338.1\|948195_949146_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	6.89656e-79
NZ_CP041616.1\|WP_143782342.1\|952454_953825_+\|extracellular-solute-binding-protein	gnl\|CDD\|270304	cd13586, PBP2_Maltose_binding_like, The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold. This subfamily represents the periplasmic binding component of ABC transport systems involved in uptake of polysaccharides including maltose, maltodextrin, and cyclodextrin. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.68554e-95
NZ_CP041616.1\|WP_143782333.1\|943666_944122_+\|hypothetical-protein	gnl\|CDD\|176900	cd08891, SRPBCC_CalC, Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical species abstracts a CalC Gly Calpha-hydrogen, thereby quenching the reactive enediyne moiety, and generating a CalC Gly Calpha radical. This radical then reacts with oxygen, leading to oxidative site-specific proteolysis of CalC. This antibiotic-induced proteolysis of CalC results in inactivation of both CalC and the highly reactive diradical species. CalC has also been shown to inactivate two other enediynes, shishijimicin and namenamicin. The crucial Gly of the MeCalC CLM resistance mechanism is contained in a loop (L1) which is displaced when CLM is bound, this Gly is not conserved in this subgroup.	1.67744e-21
NZ_CP041616.1\|WP_165700017.1\|949147_949603_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240043	cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.61356e-31
NZ_CP041616.1\|WP_165700018.1\|958296_959751_-\|trehalose-6-phosphate-synthase	gnl\|CDD\|340820	cd03788, GT20_TPS, trehalose-6-phosphate synthase. Trehalose-6-Phosphate Synthase (TPS, EC 2.4.1.15) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.	0
NZ_CP041616.1\|WP_143782348.1\|959940_961896_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.10579e-79
NZ_CP041616.1\|WP_143782344.1\|955540_956482_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226354	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism].	6.73726e-88
NZ_CP041616.1\|WP_165700016.1\|944788_946048_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.90326e-36
NZ_CP041616.1\|WP_143782343.1\|953937_955539_+\|ABC-transporter-permease-subunit	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	2.66083e-106

>NZ_CP041616.1|WP_165700017.1|949147_949603_+|NUDIX-domain-containing-protein
MARVRAATRGLVLVEGRLLVTMLHGRTGEFWLTPGGGQHFGETKEENVAREVLEETGYRVRVGDLACGRDYLGARHFPDWDTGFQQTELFFWCHLLDPDPDPAAVEHDTHQTGVQWVPVPELIGSPLYPRRLATWLQEDPETRPTWLGDVN
>NZ_CP041616.1|WP_143782338.1|948195_949146_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MAGNSQRKGAVRKAAKKGPQVGSGGQRRKGLEGRGPTPKATERTGHAAARQAGRQERADAPRRPQRRSSPKASTEIVAGRNSVLEALRTHAPATTLFVASRIDSDDRVREIIKLAGGQGVAMLEAPRGELDRLTDGSVHQGVALQIPPYDYAHPEDLLNVELPGTPLIVALDGITDPRNLGAIIRSVGAFGGHGVVVPARRSAGMTAAAWKTSAGAAARVRVAQATNLTRALEDYRRAGFFVIGLDADGDVDLPGLELADQPLVVVVGSEGKGLSRLVRETCDQIVSIPMAGITESLNAGIAGAVTLYEIARQRRR
>NZ_CP041616.1|WP_143782337.1|946446_948192_+|cysteine--tRNA-ligase
MSLRRGRPLGHRPCCGRFRSSHGGGGCRGVFTELVSHDLNARKPAVAGVEGDVLGLAGHLSCATQLPAVAGGGDGCVGGGDASVRDQREDAGSLTRVSLRLYDTATRELRDFEPVEPGRVGLYICGLTTQGVPHIGHVRFAVAFDILRRWLVRGHGYDVTLVRNVTDIDDKILNKSAEHDRPWWAWSYTHERATTQALERLGVLPPTYEPRATGHISEMIELIDLLIERGHAYPAADDSGDVYFDVRSWPDYGELTHQKLDDMEPATDADPRGKRDPRDFALWKGHKQGEPETASWPTPYGRGRPGWHLECSAMARKYLGDTFDIHGGGVDLRFPHHENEQAQSRAAGLGFARYWMHNAWVTLSGEKMSKSLGNTLTVAELTKTVPPLVLRYYLGAAHYRSTIEYGDRSLEEAQAAVERIEGYLQRALEVVGESPETLRDEAAGTDVPQGFADALDDDVNVPEALAVLFGAVREGNKTLEQAGGADRATVRHTLLAVLAMTDVLGISPFDPIWGASGATGASDAVLDALVRAQLDARAAARADHDFATADSIRNQLADVGVIIEDTPAGARWSLASDAGTR
>NZ_CP041616.1|WP_165699938.1|946065_946479_-|hypothetical-protein
MAQRSASTQRHPLVVAVATVAALLTWLVADPVLGVDLEVLTTPGGDATRLVSAGAIVSSTIIVGLLGWALLAVLQRISGRGTTIWRWTATTVALLSLAGPLTLAQTTAATVVLTVLHVVVAAILLVALPVQGSAGRK
>NZ_CP041616.1|WP_165700016.1|944788_946048_-|sensor-histidine-kinase
MAPLDERHQSSDACLGPPARHSRSPLARYGSWLILIWAPLLLGAYVIAAAQERQWRDMVLLLSACAAFAVSIVSVYRPPPLRRLTPPAWAPLGLLAALVVIMVATVRTVPASELAFMGVALVAIATAVVLPSRVAPAVVVLIGCAAAITGLVAGWGWGLASWLGVTTVLSGMGTFVMHYLTATIRELDATRVQLAEAAVSAERQRFSRDLHDLLGHTLSVVVVKAEAVRRLAETDPAAAAAHGAEIETLGRSALTEVRQAVAGYREGGLEDEISRAAAALRAGEIRPDIGHVPHGLDPGAERQLAWAVREATTNVLQHSGATTCRIQVELDPGWARVTVADDGHSTPERMPTGSVPTGHRGSRTGTGLTGLRERLAERGGTVTVERRPEGFTLAAEVPHATTRSPQAADAGRRGRQEHP
>NZ_CP041616.1|WP_143782334.1|944165_944792_-|response-regulator
MTDADKAVTRILLVEDQGMLRSALASLLDVEPDLEVVAQIGRGDEILPAVAQHRPDVALIDIDLPGGSGLDALPQLAADHPDCVAIIVTTFARAGYLRRAMTSGARGFLVKDDPVDQLAAAIRRALAGDIVVQPDLALAALRAPDNPLTAREQEVLQVSGGGATVADIAARLYLSEHTVRNYLSSAIGKTGTRNRAEARAVAQDHGWV
>NZ_CP041616.1|WP_143782333.1|943666_944122_+|hypothetical-protein
MTQPELQRELILDPIVATRHVDVDPVHAFEVFTERFGDWWDPRLTPDPRSFEGADVEEVEGGVVALHHDGEDYPIGEVLEWEIGVCFAMSFHLALPRDHPTTLTVDFTPADGGTLVTLTHGGWEEDNARARRTFTEWPHLLERFAATAVSD
>NZ_CP041616.1|WP_143782332.1|943092_943605_+|membrane-protein-insertase-YidC
MRAKHGKDPERLQKEMLELHRREGVSPVAGCLPALVQMPVIMVVYRLFSAPQIAGQDNALLHHTLFGAPLTAHLATAGTGLPVFLGLIAISLVVAYLTMRQTRASLIAPAPGGDPAQAQVAETMQQVMSWLSFGSVFAVAVLPLGTGLYLVTSALWTLLERYAVRRLVTL
>NZ_CP041616.1|WP_143782331.1|942903_943089_+|hypothetical-protein
MLSFLDPVLLPFHHLIDATAQWLPMPLVIVLLTVLVRLVLHPLNRATYRATLHRQRLAPQL
>NZ_CP041616.1|WP_143782330.1|942508_942832_+|hypothetical-protein
MHLIDRRRSLLGMLLSTVLVGALAATSADAATMAVGLGVLLLVSMTVTTNAATLAVTGSGAVIPGANRLRRQWDRTPIPMLEPDLAGKPQPRAPGHTAPEVPVLAAA
>NZ_CP041616.1|WP_143782340.1|949795_951037_-|DUF4032-domain-containing-protein
MALQITAARPDPAIFDLPWDVPLEDWPEHHLAALPRGISRHVVRFVRLSGRVIAVKEIKAELAQREYQTLQLLRRLGQPAVEPLAVIAGRTDAQGHELDACLVTQHLKFSLPYRAIFSQRLRPDTARRVLDALAVLLVRLHLGGVYWGDVSLSNTLFRRDAGEFAAYLVDAETAEVHNQLSNGQRNHDLTIAHGNIAGELMDLAAGELLAEDADALEIADRLMHRYELLWRELTATERFEHGDRWRVDERIRRLNNLGFDVGELEMSTDLDGTHIQIEPKIVDAGHHSRRLLRLTGLDVEENQARRLLNDLDAYSASQDRQNEDEELVAHDWLASIYEPVTRTVPPELRSKLEPAELFHELLEHRWYLSERADQDVPLEHAVEDYVATVLPSKPDEVAVLGLDTQEIPIRTKG
>NZ_CP041616.1|WP_143782341.1|951062_952145_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MATVTFDKATRIYPGSDTPAVDSLDIEIADGEFLVLVGPSGCGKSTSLRMLAGLEEVNDGRILIGDREVTDLPPKDRDVAMVFQNYALYPHMTVADNMGFALRIAGKSKDEIRQRVEEAAKILDLEPYLDRKPKALSGGQRQRVAMGRAIVRQPQVFLMDEPLSNLDAKLRVQTRTQIASLQRRLGVTTVYVTHDQVEAMTMGDRVAVLKDGILQQCDPPRRMYDHPDNVFVAGFIGSPAMNLMEGSVSEGGVRLPDYDLPVPRESLAGASDRVVVGVRPEDLVLSTDGTGLPIEVDVVEELGADAYVYGRSPGAAADDKPFIARVDGRTPPMKGEVVHFVPKSDHLHVFDAVSGLRLGD
>NZ_CP041616.1|WP_143782342.1|952454_953825_+|extracellular-solute-binding-protein
MKRTTGAIAMAGITALLLTACGGDTESDDPSSTTPAAEDGAEEPAGDDAETTDDGDAAGETEGDAAGETAGAPAASDGTSLVIWADDLRAAAIQPLTETFTADTGVEVKVQIVAQDKLREQFKDAVGQGAGPDITIGAHDWLGELVQNNVVAPVQIAPDVAEQFVPESIEAVTFEGQLYAVPYSVESLALIRNTDLAPEAPASMEELVANGEALVEAGDTELILAQELGKEGNAYSMYPYLSAYGGGIFPLLDEGGFDGSEAILDSPETLKGAEKLGWLGEVGALSTNQDASNVIPNFVDGKAAYMVSGPWAIEQITTGGINYAIDPIPDFEDGGATAPFLGVQAFYVSAESLNPQIAQTFVQEYVPTEEIQVGMFEADRRPPALSAAAEQVQSADPDIEAWAAAAEGGVPMPNIPQMNAVWGPLGKATADIVDGDDPAERMGTAQTEVAGTLTSK
>NZ_CP041616.1|WP_143782343.1|953937_955539_+|ABC-transporter-permease-subunit
MSQAPVGTPTPTPPWVVAVKWLLILLTLLGCTYLAWRAVEGGSWIIVTVAAFIAMAVLVVYSSRRGITLKYLLPGLILLTLFQVWPIAYTVATAFTNYGDGHSLSKEEAIEAIQAQSVRPEPDSARYGLSVAIPEADTIATAELSFLLTRPAAEDADADNILDGQELFVGTLEGLEPLPVDGVTLRGNGTIATAPGFQVLTLVEANQRAQDVSEFAVPMEGDAGIKAATGTQAFVGRATTTYDEATDTMTTIEGRVYVADEGNFVPQDGQGAALPTGWTENVGFDNFTSIFTDSGLRNGFLKIFLWNLVFPLVSVGSTFILGMLLALLFNDPRLKGKGIYRSLLILPYALPIFVTAIVWAAMFNQDFGMINDITGLNIDWLGDPWAARAAVLITNLWLGFPYMFLICTGALQSIPGDVKEAASVDGAGPVRTLMSITMPLLLVAVGPLLVASFAFNFNNFGLIYLLTGGGPFDATNSQVGNTDLLITFAYRLALESGSPNIGLASAVSIIIFLLVGALSYAGFRQSKALEEVN
>NZ_CP041616.1|WP_143782344.1|955540_956482_+|ABC-transporter-permease-subunit
MTQPAAGAPGAVPAEAAIPTTETDAVEVRPVGQKPRTGVWWRHALAILALVWALFPVMFVVSAALNPAGTLNSASPIPTSFSLKNFTDLFDSATFPFWSWFQNSLIIAGLGTFFQVFIGAASAFAFSRLRWKGRRPGLLALLLSQMFPALLAFPALYLMFLRIGEVIPSIGLNTLWGLLLVYLGGSMGANVWLLKGYFDTIPKELDEAAMMDGASHARIFFTMTLRLVAPILATVGILAFVALWGEFMLASIFLLDQERRTLGVGLYSLNLADRNKYFGMFCAGALIASLPPVAVYLSLQKQLIGGLTQGSVK
>NZ_CP041616.1|WP_143782345.1|956507_957512_+|substrate-binding-domain-containing-protein
MSRLADLAQHAGVSEATVSRVLNDRPGVAPATRQAVLTALDVLGYERPSKLRRNSAGLVGLVVPELTNPIFPAFAQAVETRLAAANYTPVLCTQVPGGMHEDDYVQMLLDRGVASIIFISGYHADTKAGIERYVALRERGLPIALLNGWRAGIEASFISNDDVAGMHLAVRHLRDLGHTRIALATGPARYVPVQRKTDGYRAAMDELLPGAEQFVQKTLFTVEGGAAAGRKLFEQGVTAVVCGSDIMALGVVRAARQDGLRVPEDVSVIGSDDSQLIGFTDPPLTTVRQDVESMSEAAVTAILEEIQGEEVVHREYLFAPELILRRSTGAAPTT
>NZ_CP041616.1|WP_143782346.1|957535_958300_-|trehalose-phosphatase
MSGATALLQALEQFATLPRVLIAVDFDGTLAPLVDEPMAARALPGSLDVLTDLARLSDTVVAVVSGRDLSTLRQLTGVSDPVLLVGSHGVETSYEEPAPQPGPRERARFAALEAELTDVLRAHPLARLERKPHSLVLHTRGLPEDAAATALRAGQDVAGRHPDLQATPGKQVLELAVRHVGKGVALRDLAAARQVDATFYVGDDVTDERAFQDLAPTDLTVRVGPGQTLARHRVDNERAVLRLLRALWAMRNAR
>NZ_CP041616.1|WP_165700018.1|958296_959751_-|trehalose-6-phosphate-synthase
MVLVSAAGTFDFVVAANRLPVDRVVEADGSAHWQTSPGGLVSAMDPVMQGRRAAWVGWAGDPTDEIAPFDRDGIRLHPLMLTVTEIQDYYEGFSNETLWPLYHDVIVPPRYRRRWWAAYERINTRFAEAVADLAAPGATVWIHDYQLQLVPSMLRAARPDLRIGWFNHIPFPPVELFGQLPWGRSVLRGLLGADFLGFQRTNDAGNFMRACHQLLGTTSTGDVVSWAGADDDLLGAEPRRVRTGAVPISIDFTSMDELAREPAVRHRAAEIRASLGDPQTVLLGVDRLDYTKGIRHRLRAISELFADGEITTPDVTLLQIATPSRERVRAYQELRSQIDGQVGRINGDFSGIGASAVHYLHHSYPREEMAALYLAADVLLVTPLRDGMNLVAKEYAASRWDGGGALVLSEFTGAAQELSQAFLCNPHDIVGLKQTILRAMREDPAALRKRMLAMRRRVRTHDVHAWARRYLDALEAAPGKPSRG
>NZ_CP041616.1|WP_143782348.1|959940_961896_+|protein-kinase
MSPETTPLGGHAEGVPQTPRRLGIYTLGRRLGEGGMGVVYRARPDGGPEDGSRDVAIKVLRPHIAHDPDARTRLSREVATLSRVSSPRVAAVLDADTEGPAPYIVTEFVPGPPLDHVVSAEGPVTGAALVDLGRGLSEALTAIHGVGIVHRDLKPGNVLMVGPDPVVIDFGIAQVADDVRLTMTGLVMGTPGYLSPEVVEGGAVTEATDWWGWAATLAFANSGTPPFGRGPMSVVLDRVIRGRTQLDDVDPAIRPLLAAALDPEPERRPHSDEVMRALELYAAHRPVTEALTVRVRSAGVRPAPDADDTQVHARTDAVSGDSWSPHTAVTPRVDPTRVQPMAPTPQTRQAPLQRPAGQGAGQAGPAGGYAAPLGRSYPAPAGQPNGPGAGQRTAGSAPRPSSPQPVHGNQGPYASQGPVPYTAGGQSPYAAPGPQGFGQPARGPDPRIGRPMRTGTLATGLVALVGIAAVAPLLAWGLLVIWSVAARAVDHVVTSLVLRRHEAGPRRSDMPVTVLTSPWHLFVAALSTGLALLLPVAFAIAATVITAGGLTESGLLQVGVADSLPMAVGSLLGMLMAWWGPGGLALRRGSRTMVRSVLPHPTITTAVAGVLLVGGLALLVWALLQGNQVSWWPTTWDAPPFLDLIPQALRP
>NZ_CP041616.1|WP_143782349.1|962232_962973_+|transglycosylase-family-protein
MATAKHRAPRKPIARRVGGLTVAAAVAVAGIGLTAPGASAESVWDRVAACESGGNWSINTGNGFYGGLQFHPQTWTGFGGGAYAPYAHQATKSQQITIAQKVLAVQGPGAWPVCSVRAGLTRDNGGATPAPSPAPAPAPAQPRDNGSASRGGGHSAMAPLARDGIRGPLTTTAIQRWVGTYQDGIFGPITTRALQTKVGAYPDGIWGPKSQAALQDYLGLSRDGSTFMNYRTVLALQKHLNANVIG

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Crispr_ID: NZ_CP041616_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_4

1511726-1511801

Orphan

Consensus_repeat	Method
TCGTGTGAAGGATGCGTTCAGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_4

>merge|NZ_CP041616|4|1511726-1511801|CRISPRCasFinder
TCGTGTGAAGGATGCGTTCAGGTGCATGAATCCTTCACACGATCGCGCCTTTTCGTGTGAAGGATGCGTTCAGGTG

>NZ_CP041616|4|4|1511726-1511801|CRISPRCasFinder
TCGTGTGAAGGATGCGTTCAGGTG	CATGAATCCTTCACACGATCGCGCCTTT
TCGTGTGAAGGATGCGTTCAGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143782792.1\|1502577_1502955_+\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP041616.1\|WP_143782801.1\|1513847_1516322_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224446
NZ_CP041616.1\|WP_143784989.1\|1512128_1512980_-\|carbon-monoxide-dehydrogenase	unknown	unknown	gnl\|CDD\|176865
NZ_CP041616.1\|WP_143782793.1\|1503005_1503677_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225097
NZ_CP041616.1\|WP_143782804.1\|1518080_1518581_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP041616.1\|WP_143784987.1\|1501494_1502475_+\|intradiol-ring-cleavage-dioxygenase	unknown	unknown	gnl\|CDD\|239544
NZ_CP041616.1\|WP_143782805.1\|1518729_1521618_+\|vitamin-B12-dependent-ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|235828
NZ_CP041616.1\|WP_143784988.1\|1507725_1508379_+\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|133025
NZ_CP041616.1\|WP_143782799.1\|1510497_1511631_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212
NZ_CP041616.1\|WP_143782807.1\|1522942_1524295_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_CP041616.1\|WP_165700045.1\|1505898_1507230_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|99746
NZ_CP041616.1\|WP_143782800.1\|1512990_1513851_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP041616.1\|WP_143782806.1\|1521893_1522208_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143782798.1\|1509341_1510505_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226082
NZ_CP041616.1\|WP_143782794.1\|1503768_1504533_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP041616.1\|WP_143782797.1\|1508388_1509336_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP041616.1\|WP_143784990.1\|1522378_1522870_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP041616.1\|WP_143782803.1\|1516913_1517549_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143782802.1\|1516318_1516798_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP041616.1\|WP_143782795.1\|1504597_1505842_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143782792.1\|1502577_1502955_+\|DUF4440-domain-containing-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	2.71606e-16
NZ_CP041616.1\|WP_143782801.1\|1513847_1516322_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP041616.1\|WP_143784989.1\|1512128_1512980_-\|carbon-monoxide-dehydrogenase	gnl\|CDD\|176865	cd07823, SRPBCC_5, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	4.96066e-57
NZ_CP041616.1\|WP_143782793.1\|1503005_1503677_+\|FCD-domain-containing-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	6.70704e-26
NZ_CP041616.1\|WP_143782804.1\|1518080_1518581_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	2.76366e-73
NZ_CP041616.1\|WP_143784987.1\|1501494_1502475_+\|intradiol-ring-cleavage-dioxygenase	gnl\|CDD\|239544	cd03461, 1,2-HQD, Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.	4.77505e-145
NZ_CP041616.1\|WP_143782805.1\|1518729_1521618_+\|vitamin-B12-dependent-ribonucleotide-reductase	gnl\|CDD\|235828	PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase; Validated.	0
NZ_CP041616.1\|WP_143784988.1\|1507725_1508379_+\|NTP-transferase-domain-containing-protein	gnl\|CDD\|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.52818e-34
NZ_CP041616.1\|WP_143782799.1\|1510497_1511631_+\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	1.97128e-53
NZ_CP041616.1\|WP_143782807.1\|1522942_1524295_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	1.58538e-127
NZ_CP041616.1\|WP_165700045.1\|1505898_1507230_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	1.09924e-97
NZ_CP041616.1\|WP_143782800.1\|1512990_1513851_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.07186e-74
NZ_CP041616.1\|WP_143782798.1\|1509341_1510505_+\|VWA-domain-containing-protein	gnl\|CDD\|226082	COG3552, CoxE, Protein containing von Willebrand factor type A (vWA) domain [General function prediction only].	9.63994e-67
NZ_CP041616.1\|WP_143782794.1\|1503768_1504533_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	1.19089e-54
NZ_CP041616.1\|WP_143782797.1\|1508388_1509336_+\|AAA-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	6.81647e-38
NZ_CP041616.1\|WP_143784990.1\|1522378_1522870_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	0.000119244
NZ_CP041616.1\|WP_143782802.1\|1516318_1516798_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	4.96279e-80
NZ_CP041616.1\|WP_143782795.1\|1504597_1505842_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	5.85421e-139

>NZ_CP041616.1|WP_143782799.1|1510497_1511631_+|XdhC-family-protein
MRDVLEELVAWWQAGESVALGTVVGTWKSAPRQPGASMLVGPGGEAVGSVSGGCVEGAVYQLGEEVIASGSPVLQRYGISDDEAMGVGLTCGGILDVFVERISPEDFPELGEVVADIEAGRPVAVATVTAHPDPTEVGRHLVVRPEGEPTAGSLGTDRLDDTVVDDARGMLAQGRTATLEYGPEGQRRGEGMRVFIASYAPRPRMLVFGAIDFAAAVARVGSFLGYRVTVCDARPVFATHSRFPDADEVIVKWPHKYVEEQVAQGALDPRTVACVLTHDPKFDVPLLEVLLGDDAPELAYVGAMGSRRTHDDRLARLRESGLTGEQLSRLRSPIGLDLGARTPEETAVSVAAEIIALRWGGLGDPLSETEGAIHRHG
>NZ_CP041616.1|WP_143782798.1|1509341_1510505_+|VWA-domain-containing-protein
MTAGAAGTNAPDTSTEAAGWSAVQTLGGFARACRAAGLPVTADRERTFLQACAAVGLAERDPVYWAGRATLTASLADIEPYDQVFTSWFGGRAMHGVASPDRPQPTVLQASLEDPGQGGGDGADEDEEEIVKVAASATEVLRHRDVAGLSPQDQATLRRLFATLTVRPPTRPTRRHTPSHRGSIDGRATVRAHLRALGEPGQIARRRRMVRPRRVVLLVDVSGSMSSYADNLLRLAHRMVQAAPRTTEVFTLGTRLTHVTRALRERDADRALVAAGETVPDWSGGTRLGESLSVFLRRWGRRGMARGAVVVVFSDGWEREGPEQLGEAMRQLRSLAHRVVWVNPHRGKAGYLPVQAGIVAALPHVDEFVAGHSLAAFEEVLEVVSGA
>NZ_CP041616.1|WP_143782797.1|1508388_1509336_+|AAA-family-ATPase
MSDEDVFASPQALSDALAGTGYLADAGLTTVTWLAQHLDRPLLLEGEPGTGKTALAEALAELLAVPLIRLQCYEGIEASQALYDWDFPRQILHLRAVQALTEQGSSGRAGVGTDEAGGGAAAPERVAELEANLFDERFLLARPVLRALREAPCVLLVDEIDRADDEFEAFLLEVLSTWSVTIPELGTVRAQTPPLVVLTSNRTRELHDALKRRCLYHWIEHPGMERELAIVRARLPEVEESLAAEVVRLVQRLRSEEDLVKPPGVAETLDWTRAVVALGVSRLDPEVAAATMGAAVKYREDTERIRVALDRMLTR
>NZ_CP041616.1|WP_143784988.1|1507725_1508379_+|NTP-transferase-domain-containing-protein
MAGGAVGTLEPVTSHPTRTRTTGLLLAAGAGRRYGQPKGTVVDADGAWVVSAARALLDGGCADVLVVTGAEAEHVEALLAADDDLTELDTVTTTRCGTWEQGMGESLRAGLTALATRGRTIPQQALLHLVDLPDVGAQVVARVLASAGAGTAALARAAYDGRPGHPVLIGRDHWEGVLGRADGDAGARGYLRTVPPLLVECGDLAGGADVDEPTCRG
>NZ_CP041616.1|WP_165700045.1|1505898_1507230_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MEAPQFVGQDVEVLCADGQSRRYVHLDNTASTPALTEVVREVEEFLPWYSSVHRGTGVKSRRSTEVFESTRDTVAAFVGARPSDQVVLVRNTTEAINVLSGALPAGTRVLGTPVEHHANLLPWRRHDFEMLPFPASADELCASCDQALREAERPFDLVAVTAASNVTGEVWPLARLAQIAHRHGARLFVDAAQLAAHRAIHMAADGIDLLAFSGHKIYAPFGAGALVGDLGALSHSAPFMRGGGAVLMVTADEVIWEVGPERHEAGSPNVVGAVALAAACRALSAVGMDEVARHERVLAAQLRAGLEQTPGLELFGLWSGADIDRVGVATFQLPGYRHPLLAAILSAEHAIGVRNGCFCAHLLMARLLGLTTEELQALSAQFHAGQQPAIPGAVRASIGLGTTSADVDRLVQALGDLADHGPRATYHYEPDHDEYLCHQLSPV
>NZ_CP041616.1|WP_143782795.1|1504597_1505842_-|CoA-transferase
MTTSPGHPADTAPRHTPPGRGPLAGTLVVDLSRALAGPHAAMMMADLGARVIKVESPGQGDESRTWGPLVPNTDGEGSTSAYFLACNRNKESIALDLKSDDGRATLTALIERADVLVENFRTGVLDRLGFDADRLAELNPALIVLSITGFGHDGPEGGRAGYDQIAQGEAGLMSITGSGPQDPQRVGVAISDLLAGMHGAYGVLAALLERQRTGRGQIVRTSLLASAVGVHAFQGTRWTVAGQVPEPFGNHHPSIAPYGLFHCQDGAVQIACGNDRQWQSLCAALALSVPEGELATNTDRVQRRGEVITLIEDALAALDIAEVLTLMNEAGIAAGRVRDMQEVYDWEQTRSQGLLIDVEHPGLGDIQLPGPPLRYFELEGSGEVTRTGHQAPPLLDQDGAAIRAWLASTDPTSS
>NZ_CP041616.1|WP_143782794.1|1503768_1504533_-|enoyl-CoA-hydratase/isomerase-family-protein
MSADTAGEVLSHVEGQVATLTLSRPGKHNSLTRAMWRQLTELVRELDDDPQIRVITVRGKGSVFSSGADLPEVIEAAGARESAQAFCEEVAAALVALATSSKLTVALLARHVSGGGAEIAMACDLRLAQDDILFSIPVARMGLVPDRLTVRRLLSLAGPGTARAILLLARRLDAEHCLRVGLVDQIVPVGDLDEALHAVLRDLSDTVDYSVTNTKALLLREEALTNGDLVEEFVESLVSGGVAQNGARHLAGLR
>NZ_CP041616.1|WP_143782793.1|1503005_1503677_+|FCD-domain-containing-protein
MSLLVDVPRSLAAEVAERLSARCAEVPANTRLGTKKELQVETGVAAATLNEALRMLQSQGLLTLKTGPNGGVFTAEPDPLVSIGQALVRVRGSSQVAEVLPLRDALDPLTVREAARHRTAADLRMLKGKMTHMKDVLEDDLEFAKAVWDFHRGICSVGRNEILKSVSLGLLEIIVRSTDAVVGKTMEQKLQRIALHQALYDAIESQDPEECDRASHAHHVEGG
>NZ_CP041616.1|WP_143782792.1|1502577_1502955_+|DUF4440-domain-containing-protein
MTTTDEQQLRDLEDARYQAMERGDADAVAALCHPDLTYAHSNGARDSLETLVKKIADKVFVYGPIDHPIAQVIINGSTGVVVGGMRARVEVNGEERNLNNTAIAVWARGDAGWRLVAYQPTPLLP
>NZ_CP041616.1|WP_143784987.1|1501494_1502475_+|intradiol-ring-cleavage-dioxygenase
MPPERSPGDEGTHTVEVSAEQAARETALVEQVVASFEGAESPRLKQLMQALTRHLHAFAREVRLTEEEWGGAIDFLTRAGHITTETRQEFVLLSDTLGLSMQTIAINNEAYQDATEATVFGPFFVEGAPRIDNGADLAFGAAGQPCWVEGRVTGTDGNPVSGARIEVWEADEDGFYDVQYDDGRTAARAHLFSDQDGTYRFWGITPTPYPIPYDGPVGEMLQAVGRSPMRTSHLHFMVSAEGSRTLVTHIFVDGCDYLDRDSVFGVKESLIKDFVLQPPGTPTPDGRDIGEREWASVRFDIVLAPAPAEETADVHRIAVLGSGAGR
>NZ_CP041616.1|WP_143784989.1|1512128_1512980_-|carbon-monoxide-dehydrogenase
MELKHTFTVPASPESTWALLTDLKQVGGCFPGATVTETDGDTFSGTVKVKLGPIQMQYAGTGSFLERDDAAHRAVIEGKGKDKRGNGTASATATMTLTPDGDGTKVEVLTDLTVTGKPAQFGRGVMQDVSDKLLGQFVGCLESTLGADEEPTAEAEAAEAAVSAAAATAAAVSASPAASEPESASEPASASEPVIEPAVGSTPQPAADPAPGPSGSETPPLAEPRRSGSGTPSVGGTPSSVDDAIDLGELVGPVLRERYGMALAVGVVGLVLGIVIGRALGRH
>NZ_CP041616.1|WP_143782800.1|1512990_1513851_-|xanthine-dehydrogenase-family-protein-subunit-M
MIPAPFDYAAPATVEEALALLAEHGDEAKVMAGGQSLLPVLRMRLNAPELVVDISGIESLKGITDTGDGIRIGAGATYQEVLDSDLVREHLGLLHKAVSEVADPQIRHRGTVCGALAHADPAGDVGAPVLALDATMEVQALGVVGPRQVAGADFFVDLFETAVGEGELLTAVTIPKHTGWGSRYEKFVRVSHQWAIIGIAAAVRSEGGVIAEAKVGMTNMGSKPLRATAVEAALAGQPATEEAIAEICARAGEGTEPPSDLNGKADYRRHLAGVLTRRAVLAAAGG
>NZ_CP041616.1|WP_143782801.1|1513847_1516322_-|molybdopterin-dependent-oxidoreductase
MTITEEPQTGNREVGKDRRRKEDQRLITGRTKWTDNLQMTGMLHLSMVRSPFAHATITNIDTSEAKAAPGVIAVLTGADVKDLQGSLPNAWPVTPEQKAPPHPAIAVDRVAFSGEIVACVIARSAAAARDAAELVDVDYDELPAVIDLKAAAADEVLAHPELGTNESALWIFDSAEAGTGEDVEAAIRDAEVLIEREFRQQRLIPSFMEPRSVVVDPTGEQFVMWSSTQVPHILRLMLALTLGVPESKVRVIAPDVGGGFGGKLQVTPEEVITFLAARHTGKPCKWNETRSESLLSAHHGRDQWQKLTLAAKKDGTVTGLKVHLTANMGAYLGLVTSGVPVLGAFMFNAIYKFPSYRFECQNVFTNLTWTDAYRGAGRPEATFAIERMMDELAIELGRDPLEVREQNWIKHEEFPFTTVAGLEYDTGNYEAATARAKELFGYDELRAEQAARRESGDRIQLGIGVSTFTEMCGLAPSRVLGSLAYGAGGWEHASVRMLPSGKVEVITGSSAHGQGHETAWSQIVADELGVPFEDIEVLHGDTQISHKGLDTYGSRSLVVGGQAVIKAARKVVEKAKPLAADALEANVDDLEFSGGRFTVKGAGEGQEGVAITDLALRVFAAHDLPDGVEPGLDADATYDPVNFSYPHGTHLCAMEIDTETGESTMRSYVCVDDVGTVVNPLIVDGQIHGGLVQGIAQALWEEAVYDDQGTLITGSFVDYTLPTSADTISFVTDRTVTPSTTNDLGAKGVGEAGTIASTPAVVNAVLDALRQYGVTDILMPCTPERVWNAIQSGKGDQPTVESAAPHFEESAPNQDTPETEGGTL
>NZ_CP041616.1|WP_143782802.1|1516318_1516798_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MTKISVTVDGVNYQDEVEPRTLLVHYLREQLGKTGTVVGCDTSNCGACTVHLDGRSVKSCNMLAVQADGHEVTTIEGLADGDTLSPVQEAFRDCHALQCGYCTPGMIMQATDLLKENPSPDEAYVRQHMEGNLCRCTGYHNIVKAVLQAADASPSGEQA
>NZ_CP041616.1|WP_143782803.1|1516913_1517549_-|hypothetical-protein
MTTSAEPTTDDDPEESTTPPPTQTEAAPSPAPDPCSAYDMGIDLGYGGAVEIFECEAGWAYATSIGGTGDTEFIAQRVDGVWVRVMGMGSTTCQDELLDMGAPPSVVVDVLPCDVMYPPDQPPPADNPPSSDCTVETEIFGTTYADLAAVSCEDARAVWAAAATGHPGSWDELVPAPGGWECTVVPYEPYPPIAGACSGPGDGEQFFVLNP
>NZ_CP041616.1|WP_143782804.1|1518080_1518581_+|transcriptional-repressor-NrdR
MHCPFCRHTDSRVVDSRVQEDGTVIRRRRQCPECGRRFGTVESATLSVIKRSGANEPFSREKVLTGVRKACQGRPVTEDELQILGQQVEETIRSQGQAEIDAHEVGLAILAPLRCLDEVAYLRFASVYQAFESLEDFEGAITLLRTERDAAGSDSEAQAEATQGSP
>NZ_CP041616.1|WP_143782805.1|1518729_1521618_+|vitamin-B12-dependent-ribonucleotide-reductase
MTETSAARSRSRRAGKGLKIERIYTTPGVHPYDEVTWEKRDVVQQNWKTGETIFEQRGVEFPDFWSVNASTIVTTKYFRGALGTEARETGLKQLVDRVVLTYVKAGKEHGYFATDEDAEVFEHELTYALIHQIFSFNSPVWFNVGTASPQQVSACFILAVDDSMDSILNWYKEEGFIFKGGSGAGLNLSRIRSSKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIETKAREEHKIRALRDAGFDMDLGGTDIVSVQYQNANNSVRVSDEFMRAVEDGDEFGLRSRMDGSVIETVDARGLFNKMAQAAWECADPGIQYDDTINDWHTNPETGRITASNPCSEYMSLDNSSCNLASLNLLKFLREDNSFDVQKYQAVAELVITAMDISICFADFPTEPIGETTRNYRQLGIGYANLGALLMATGRGYDSEGGRALAASLTSLLTGAAYKRSAELAGVVGPYNGYARNADAHKRVMRKHQAANDEIRSLHVMDSDIHKAATKAWDAVVKVGEKQGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTIPRALKMLGYAEETIEAIVEHIADKGHVIDAPGLKTEHYEIFDTAMGERSIKPMGHVRMMAAVQPFLSGAISKTVNLPETATVEEIGDVYLQGWKLGLKALAVYRDNCKVGQPLSDGGSTAKDKAKDAAEAKVEKVVEYRPVRKRLPKRRTSQTTSFSVGGAEGYLTAGTYDDETLGEIFLKFGKQGSTLAGVMDAFSIAVSIGLQYGVPLETFVEKFTNLRFEPAGLTDDPDVRMAQSIMDYVFRRLALDYLDFETRDYMGIHSAEERSRELETGSYQAGSGSDDSGDEALEDELESYSQSVATSTKKERPEVEEKAATGAALARPVEGGINSSAELMDKFQGKSADAPMCMTCGTKMQRAGSCYVCEGCGSTSGCS
>NZ_CP041616.1|WP_143782806.1|1521893_1522208_-|hypothetical-protein
MSAEPVNTAIGEHDDASAECWCCGSTDAPARMVQLGGHPEVHLCLQCAHFVHQRAREIEDEGKRGPAVLVRDQFRNLRAEMIRRGWHQNRVIGGKLRWLGKYLP
>NZ_CP041616.1|WP_143784990.1|1522378_1522870_+|DinB-family-protein
MERARLDLHGLVEQATASDLRRCTDGTRWTNEQMLWHMAFGYLIVWRLLPVVRLFGRLPDGYGRRFAAVLNASTRPFHLVNYLGGCGGTLVFHGPRLTRLLDSTVDKLHRRLDAETEDSLQRRMHVPVRWDPFFADSMTVADVYHYGTQHYDFHRAQLTLLRL
>NZ_CP041616.1|WP_143782807.1|1522942_1524295_-|FAD-dependent-oxidoreductase
MSRSYDLIVIGAGMAGVAAANMCASRGWSVGIVDALPYGGTCALRGCDPKKILRRGAEIIDSARLMRGKGITSDGLAISWADLMKHKHGFTDPVPARMEDTLRANGVDTLHGPARFTGKNNLEIEDAHHTARHFLIATGARPRTLGFPGDQHLVDSTDFLQLPELPQRILFVGGGFVSFEFAHIAARAGSAPTIIDRGPRPLKAFDPDLVHLLIARGAASGIELLRSTTITSIEKSEAGYQVTVDRSGRTETMVFDLIVHGAGRTPELTSLDLDSAGVAWDEHGVHVAPHLQSTTNPAVYAAGDSADTPGMPLTPVAVIEGKVAASNMLNATTKAPDYTGVPTAVFTIPELARVGMLEQEARDQGIDLEVRHHDTSSWYSNYRIGETTAAAKILIDRTTDRIVGAHLLGPDYAELINVLGLAMKLDLTTRQLKSVTAAYPTVGSDLGSML

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Crispr_ID: NZ_CP041616_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_5

1970617-1970694

Orphan

Consensus_repeat	Method
GTCCGGGGGATGAGTGCCCACGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_5

>merge|NZ_CP041616|5|1970617-1970694|CRISPRCasFinder
GTCCGGGGGATGAGTGCCCACGGGGATGGCGGCCGCGCATGGGAGAGGGTGCCGTCCGGGGGATGGGTGCCCACGGGG

>NZ_CP041616|5|5|1970617-1970694|CRISPRCasFinder
GTCCGGGGGATGAGTGCCCACGGGG	ATGGCGGCCGCGCATGGGAGAGGGTGCC
GTCCGGGGGATGGGTGCCCACGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_165700067.1\|1964745_1965780_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP041616.1\|WP_143783119.1\|1957516_1958524_+\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
NZ_CP041616.1\|WP_143783133.1\|1976835_1978377_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP041616.1\|WP_143783123.1\|1963806_1964739_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238919
NZ_CP041616.1\|WP_143783121.1\|1959193_1959430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143783129.1\|1970775_1973412_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|131764
NZ_CP041616.1\|WP_143783132.1\|1976155_1976839_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP041616.1\|WP_143783130.1\|1973414_1974299_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP041616.1\|WP_143783131.1\|1974394_1974976_+\|phosphodiesterase	unknown	unknown	unknown
NZ_CP041616.1\|WP_143783127.1\|1968695_1969241_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP041616.1\|WP_165700068.1\|1981047_1981887_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP041616.1\|WP_143783120.1\|1958613_1959108_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176908
NZ_CP041616.1\|WP_143783126.1\|1967914_1968544_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|376405
NZ_CP041616.1\|WP_143783122.1\|1959426_1961880_-\|DNA-topoisomerase-4-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP041616.1\|WP_143783134.1\|1978456_1979440_-\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP041616.1\|WP_143783125.1\|1966077_1967859_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP041616.1\|WP_143785039.1\|1974993_1976145_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366747
NZ_CP041616.1\|WP_143783135.1\|1979500_1980355_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|214854
NZ_CP041616.1\|WP_143783136.1\|1980475_1980811_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379324
NZ_CP041616.1\|WP_165700210.1\|1955707_1957456_+\|DNA-alkylation-response-protein	unknown	unknown	gnl\|CDD\|183199

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143785039.1\|1974993_1976145_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	2.48316e-29
NZ_CP041616.1\|WP_165700067.1\|1964745_1965780_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	0.00498128
NZ_CP041616.1\|WP_143783119.1\|1957516_1958524_+\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	5.76155e-57
NZ_CP041616.1\|WP_143783133.1\|1976835_1978377_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.48517e-28
NZ_CP041616.1\|WP_143783123.1\|1963806_1964739_+\|sugar-kinase	gnl\|CDD\|238919	cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	3.78082e-72
NZ_CP041616.1\|WP_143783134.1\|1978456_1979440_-\|YihY-family-inner-membrane-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	8.86953e-46
NZ_CP041616.1\|WP_143783129.1\|1970775_1973412_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|131764	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.	1.54821e-117
NZ_CP041616.1\|WP_143783132.1\|1976155_1976839_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	4.02821e-85
NZ_CP041616.1\|WP_143783130.1\|1973414_1974299_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	5.42087e-09
NZ_CP041616.1\|WP_165700068.1\|1981047_1981887_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.09998e-17
NZ_CP041616.1\|WP_143783120.1\|1958613_1959108_-\|hypothetical-protein	gnl\|CDD\|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	1.02211e-11
NZ_CP041616.1\|WP_143783126.1\|1967914_1968544_-\|nitroreductase-family-protein	gnl\|CDD\|376405	pfam00881, Nitroreductase, Nitroreductase family. The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.	2.79648e-25
NZ_CP041616.1\|WP_143783122.1\|1959426_1961880_-\|DNA-topoisomerase-4-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP041616.1\|WP_143783125.1\|1966077_1967859_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	1.71818e-37
NZ_CP041616.1\|WP_143783127.1\|1968695_1969241_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	4.05367e-25
NZ_CP041616.1\|WP_143783135.1\|1979500_1980355_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|214854	smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.	7.94726e-14
NZ_CP041616.1\|WP_143783136.1\|1980475_1980811_+\|ATP-binding-protein	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	6.67533e-06
NZ_CP041616.1\|WP_165700210.1\|1955707_1957456_+\|DNA-alkylation-response-protein	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	1.61182e-149

>NZ_CP041616.1|WP_143783127.1|1968695_1969241_+|sigma-70-family-RNA-polymerase-sigma-factor
MTAVLTPASAIGGHVQRSADPVEDAVREVFVAHYGQLAGWAAHLVGDRDLGHDVATEAFTRLLSHWERVDDPRPWLFATAANLVRDHWRKRGREAKAYERFQGGRPGPEEALPGPDQAQLLSVREAVEQLPDRLRLPVLLFYFADLSVAEVARQVGRSEGAVKRDLYDARSSLAATLEEAR
>NZ_CP041616.1|WP_143783126.1|1967914_1968544_-|nitroreductase-family-protein
MEFSQVVRSRRMVRNYDPDRPVPDDILARVLANAVRAPSAGFSQGWDFVVLRTDEERQSFWAATTDPGKEADNWLRGIQKAPCLIVCCSSPEAYLDRYAEPDKGWTDRDAARWPVPYWDIDTGMAALLMLLTAVDEELGGLFFGVPVESLQTVAAALDVPAGRNLVGVVSLGYPAPDRKSPSLRRGRRAVPQVAHAGRFGTPLELAGPH
>NZ_CP041616.1|WP_143783125.1|1966077_1967859_+|polysaccharide-deacetylase-family-protein
MKTFRSLATGAVAMALVLACSLTQGSAAGSLTDLDHDTGATQVDTGPNGSDTETAPLAGDLNFSVERLAGANRYATATAVSREFFSPGVPVAVVATGANFPDGLAAGPAADQLGGPVLFVTPTVVPAVTRAELVRLKPQRIVVVGGTGAVSSAVRAELDTLTAGAAIRVSGESRYDTAAALSAHAFPGGATIAYLATGSSFPDALAGGPAAGVQSAPMLLTSRTRLNAATRAELLRLNPDRVMLLGGTGAISAAVAQEVSQFATVERISGSDRYATALALSQRVFGTDRPGVLVATGRSWPDALSSGAAVALTHGPILLSTGTSLPLGMRSELDRLSPTTAYVLGGSAAQSNEIPREVQRRLGVCWSGTRPAAGSQQVISSVPGATKQLAFTLDMGGRLDGADQILDYLIDNQVCTTFFPTSLSANSSEGRALITKIAAHPELFEIGNHTVHHCDLVSGGGGSPSGAPCQVPMTRSFVQHELTDAETVLEALTGMPASPYWRPPYGAHNATVRNWVAEVGYTKTIYWSRDTIDWDPNTTAAQIVSRTTVPAPPAGTIVLAHLGGYATPQALPTIVNTLRSQGYTLTTLSDMRD
>NZ_CP041616.1|WP_165700067.1|1964745_1965780_-|RDD-family-protein
MSEVTVDVDTTRFSRDPTRTYPPLLVRRLTARVIDSAIAFALACVVVLPLTFSQASDALLLGGFDSFGDLLDEWDLGTDPGGSIGAALERLQPVVLSTVCLQALVIWAYEWLSLTLTSSSIGKVVTRVRVTRHHHTFEPTMAPAVRAHRSILKRALRMGLRAGLVVGAPALAVGMLLAAAFAVPGAVDLAELFIALSIVLLIVWLTGGVGLHGLATGTRVVGFEWQELRQEAGSQIEYHRGNADDYLRKLQEAARTPGSQRVARTVEHDPRVGSAMARGTTVTQQIEQRGPHDREWVPETLRSREGLQDAATTAARHLREVYREEGLRGVLDSFTRRRSGPGGA
>NZ_CP041616.1|WP_143783123.1|1963806_1964739_+|sugar-kinase
MWPRVTLVTRVIHTGQALVDLVVEVGAIPRRGGNVMAQSFTRYAGGSVSVLAAAARSGAQAVHAGAHGSGPNGDLIREALASEGVTLSAAPVADADTAVCVVMIEPTAERTFVTTLGAERRITPESLGSSTPVAGDLVCVTGYSLLEPTRDPLLEWLDSLDEGVRVVLDPGAAFAGLDPAVRQLMLGLTNVWTSNAEEAHELTGIEELTATLPAISQLLPQGAVVIVRDGPEGCYLHAGGDVEHLPGYPQEPVDTNGAGDAHTGVLVAELAAGTDARTACTRANAAGAIKVTRRGPATAPTRAEIDAFLA
>NZ_CP041616.1|WP_143783122.1|1959426_1961880_-|DNA-topoisomerase-4-subunit-A
MARRTPPGPDLFDVEQKIVDIDVRDEMQGAFLEYAYSVIYSRALPDARDGLKPVQRRILFGMHEMGLRPDKGHVKSSRVVGDVMGKYHPHGDTAIYDALVRMAQPFTMRLPLVDGHGNFGSLDDGPAASRYTEARPAPAALLMTASLDEETVTFVPNYDDQLMQPEVLPAAFPNLLVNGASGIAVGMATNMAPHNLGEVIGAARHLISHPDASLDDLMRFVPGPDLPLGGRIVGLDGIRDAYETGRGSFRTRATAKIESITARRKGIVVTELPYLIGAEKVIDKVKTLVQSKKLQGISNITDLTDRTKGLHLVIEVKNGFNPEAVLAQLYKLTPMEESFGINNVALVDGQPRTLGLRELLSVYVEFRTDVVRRRTAYRLRRKEERLHLVEGLLIAILDIDEVIQLIRAADDVATARERLIQVFDLSELQANYILDLQLRRLTKFSRIELETERDELVREIERLRALLEDHQLLLNLVSDELAQVAKEHGTPRRTVLLESDGISATAAATTPLEVADDPCWVLLSSTGLLARTSTDEPLGTGGARRKHDVIVSAVRTTARGSVGIVTSDGSIVRLSALELPTLPPTNGAPTLSGGAPLAAFVDLPAGALPLALCSLSDAGPGLALGTRAGVVKRVNPDYPGNKDEFEVISLKDGDEVVGAVELTTGTEDLVFVTDDGQLLHFGADLVRPQGRTGGGVAGIKLSSGAAVVGFWALDPAADNVVVTVSGSSGSLPGTQTGAVKVTPYAEYPAKGRATGGVRCHRFLRGEDTLLLGWAGAAPPLAASGNGAAVDLPEATGKRDGSGTPGTVPITQVASGSV
>NZ_CP041616.1|WP_143783121.1|1959193_1959430_+|hypothetical-protein
MSDTTPDGHQEPDEATSGRDDSGQIPSADQDVASGQPYDPRQDPETDANLSQEKAPAQEGVNQRDPAEGPDDESATDG
>NZ_CP041616.1|WP_143783120.1|1958613_1959108_-|hypothetical-protein
MPLVARVDAPGVVCLTWRLSTRPAAVWRHLTDVDRLPEWLGRRQDGSFTAGDHLVVDHGDGYLCRSDVLVAQDGRSLAMSWQFPDEPPSRVTIELETVLPDDAMPDGATDLHLEHHELADLAGSYLPGWITHLTYFEASLHGEPLPTGSFWRLYETHDRLTTRS
>NZ_CP041616.1|WP_143783119.1|1957516_1958524_+|DNA-topoisomerase-IB
MVRLRKVAPDDAGWTRRRAGTGFTYLDEDGERLPAEEAQRLKALAIPPAWEDVWICPHANGHVQAVGTDDAGRRQYLYHPDWREKQDELKFERIVEASEVLPDARRRVTRDLRREGMPLERACATAVRMLDLGYFRIGHDVYTDLNGSFGLTTLERQHVRSVRGGLRFCFVGKGGITQELAIEDEDVTTALRQMRRRRTGSQRVLAYRGDNGWHDLDADEVNAYLAELFDGRLTAKDFRTWHATVHAAVALASSPEPGDTLASRRRAVKAAVEEVSEFLGNTPTIAKGSYIDPRVIDHYVEGETVSVPRATGRTPVRRQRAVEAAVRDLLTDEEG
>NZ_CP041616.1|WP_165700210.1|1955707_1957456_+|DNA-alkylation-response-protein
MTVLTHEDPEPVTGPRPRVTHQVLNQVPPRVGVNEFRSNTVLSEAVSTFGAGWAVPQLESVGELVGSAGFQADARAAHSSAPVLRTHDRWGQRIDQVDYHPAYHRIIGAAVAHGAHTSAWADPRAGGHVARAATFMLFAQIEPGHACPVSMTHAVVPALRHSPALADRWLPRAYGTAYDGRLRPAADKPGALFGMAMTEKQGGSDVRANLTRGVHVGGTAGGAAGAGTEDEDGASSDDYLLTGHKWFCSAPMSDAFLVLAQTSRAGAEEGLSCLLVPRVLEDGTHNVFRIQRLKDKLGNRSNASAEIELDGTVGHLVGEPGRGVRTIIEMVARTRLDCVLGSTAGMRQSVAEALWHVRHRSAFGAKLIDQPAMSAVVADLALESEAATLTSLRLAQAHEDDASEQDVLFARLATAVAKYWICKRGPHHAYEALECLGGNGYTEDFPLAMRYREQPVMAIWEGSGNVIALDVLRAMGREPETVEALLTELALAEGTHRDYDAHLGRVRALLAATRGQDPAVLQAGARRLTEALALALQASLMIRHAPAYSSDAFVAARLGEDRGGQYGVLPAGADVAAILARH
>NZ_CP041616.1|WP_143783129.1|1970775_1973412_+|GNAT-family-N-acetyltransferase
MTDVPPGYPREWEADVVLTDGSVAHVRPIRPGDGEALHHFHSQQSEESIYLRFFAPIRRLSDRDVHRFTHVDYDKRVALVMIIGDEIAGVARYDRLEETDYAAAEVAFNVADKHQGMGIGSVFLEHLAAIGRESGVKLFTADVLPQNRKMINVFQDAGFEVSHEFEDGVIAVSFAIEPTDKSRAVELAREHRAEAVSMRMVLHPSSVVVVGASRREGSVGGALVRHIREGGFTGDLYAVNPAADEIAGVSVHPTVSAIGRSIDLAVIVVPAADVPDVVRECAFAGVRAVVVISSGFAESGEEGAALQRQLLETARVHGMRVLGPNSFGLINTSEEFSLNASISPRMPMMGSLGLFAQSGALAIAVLASAERRGLGLSTFASAGNRVDISGNDLMQYWIDDEATAAVGLYLESMGNPRKFTRISRQLSAVKPVIVVKSGTGHHGVPGHTVRATRERPEAFAQMLRQSGVIRVDNTHQLFDVAQLVVHQPLPKGRATAIVTNSDALSTLTADAAVERGLTIGHGPIALPVTATVQEFTAALQTALADPGVDSLIACFIPPIVIPDTDIVTAVEEVVADSEKTCVATFLGMRGVAPGGSLPTYPLPEDAVSALAAATDYAEWRGRDRGERVRPGRINRRRAHDAIESVLAASPEGRAMTVEEVTELLNAYDIPLWQAHPVDDAEDAARMAQDVGLPAVVKATDPALRHAAGHYWIRTGLRTPAAVAAAYEDLQVVLAERGVEGIAVQAQAPTGVVVEVTSAEDPLFGPVVGFGVAGVPSELLGDVSHRFPPLTDTDVADMVAGVRAAPLLAGYRGTDPVDQVALHDLVARVSVLADDLPEVAQLRLNPVVAHPSGVAVLGATALVQPDPGRADVGRRALSR
>NZ_CP041616.1|WP_143783130.1|1973414_1974299_-|hypothetical-protein
MSAVARCLAVLVVSAAVLTGCGDDTDNPAPSETAPTASSDATSTTAPADTDAQTATQRPTAAPTTAATASSPDPSSGATGTAAPSAPAPAPRPAEPSAPPQPSAPTSAPAGPSDCTGDALSEDILGFPGGVSVYFCDGDWAYAAYPNAPGAPEFIAERVDGRWFHAVTIGDPVCKDDLTSRGAPPAIAKLLPDCEEPAPTAPPTTPPPTEPPAPDCIISTNLYGDTVADLIAVTCGDATAEWELAEANADPSWNVPWITPTGWECYVSPYDPESKAAGACYAPEGNAQFTLYVQ
>NZ_CP041616.1|WP_143783131.1|1974394_1974976_+|phosphodiesterase
MPQPDSMTLPQALREDIEHAGYLPALVTDVVATAVAGDEIVGHLVHQETTLDEEAVRRHVTVLVLTPQRLVIGHADDHETGEPQGHFATATTETVPLSAVRGVMMTHVLPDPASYTGGLSGRALTLTLGWGTVSRLDLVPAVCADPTCEGDHGYEGTVASDDISLRITAEADGPEALSRAIDFARQLSARLGR
>NZ_CP041616.1|WP_143785039.1|1974993_1976145_+|alkaline-phosphatase-family-protein
MPPEFLEVEYAGSLATVLPAVARSLGVAADPAAALGIEPLFTLPPARSAVLVLVDGLGSEQLRRRSGHAPFLRSLQSPAPALTCGFPATTATSMGSLGTGLPPGAHGIVGWQSLMPEHDRLLNHLSWDEGPDPERYQPHHTVFEQLAANGVAVTRIGPSYFDGSGLTRAAQRGGVFSGARELSARVDAAVAALTASPRAFVYLYWGEVDKTGHSFGPDSWQWGEEVERTDAALSDLAARLPPGTSLTVTADHGMVSAPESARRDLAWEEDLAHGIRHLGGDPRAPQPYCEPGAAPDVLAAWTELLGETALVVSRQEAIDHGWFGAVEDRVSERIGDLVVAMRSNATVLDSRDHRPELLVLQGHHGSLTREEMAIPLLHLPAVT
>NZ_CP041616.1|WP_143783132.1|1976155_1976839_+|thymidine-kinase
MAELVFFTGTMDCGKSTLALQMDHNHASRGRAGLIFSKLDRAGESVLSSRLGLSREAIEVTDNLDFWELVVEQATNGRRIDYLICDEAQFYTPHQVEQLARLVDEMGLDIFAFGITADFRAELFPGSRRLIELADRTEVLQVEALCWCGRTATHNARVVDGVMVVEGDQIVVGDVGEADAEPAAQVEYEVLCRRHYMRRMTSHAARAASLSPEVLPFDLDVCPVPQR
>NZ_CP041616.1|WP_143783133.1|1976835_1978377_+|MFS-transporter
MTGTEAEHPGGHHGASDEWDEQPSWEDPAARAEQEQWRRDHPLEGGASYGPIAGASARPKPTKTAKVAQAGVTVGHGITKGAKAVAHGTNVVGHSAYRVTRKATHAGGAGETGLSRLIEVHGLHNAGDAAVAISLAGTLFFSVPTGEARGQVALFLLLTLLPFSIIAPLVGPFLDRFRHGRRWAIGATMAIRAVLCLVLASSLDTSSWWQFPMALGILVASKAYNVTRSAAAPRLLPQGMTLVKANGRMSLAGTLGATLAAPIAVGVGYFGAEWALRFAFLIFALGTVLAILLPPRVDSTKGETEVPISEVAGRGSRWVPAPVVTALRANVGLRMLSGFLTIFLAFLLRESPPPGWGGNYALLLGVVVAAAGIGSALGTLLGSLTKMLPPRALVRITLIVDVVAAVITAINFGMVTIVMLSLVVGLCQQVGKLALDAVIQETVPEHMRTSVFGRSETLIQLSWVIGGGIAVALPTDATIGMSVIAVVLVAWLLVVLLPGRKGSRLTTGDASSA
>NZ_CP041616.1|WP_143783134.1|1978456_1979440_-|YihY-family-inner-membrane-protein
MARVADHESPSEAYGAGSVEPRQIPLRGWLRILRRVIRRVVDDKFSLYSAAVAFFAVLSIAPVLLTALSVYGAINTPAQAMDQLSGLVELMPPTLAELVADQLVSITAASTHLLTVRGLLALAVALGTATTATTFLIDALTVAYREQETRGMLRRSVLALTFVFGGALVIGAVITASTVVSQVLSDDPSWLRVPLATGIWIGLAALVASCLAVLYRFAPDRQGRARWGWISIGATATTALWLAASAGLFLYVRGLGTYERTYGSLAGVAISMLWLWLTVLLIILGAAFNAETERQTARDSTVGAERPPGQRGAVVADDVPPHPEDES
>NZ_CP041616.1|WP_143783135.1|1979500_1980355_-|MBL-fold-metallo-hydrolase
MLLQIAPGVLVHQSALLQNNTLVVQGATGVLLIDAGITDSEMRCLAADLRELGQPVVAGFSTHPDWDHVLWHPELGHAPRYGTARCAGIMAELLSQPDWRTQAAEGLPPEIAGAVPLDLFGQLTGLPAGTRHLPWDGPPVRIIEHPAHAAGHAALLVETCGVLAAGDMLSDVLVPMLNDAASTDDPVGDYLVGLTRLEEVADDVAAMVPGHGSVARADQVRARIILDRAYIHALRDGTTSADPRIGPAAQPGWEWVSDLHEGQVQSLARSRQDDGPSSSALRMP
>NZ_CP041616.1|WP_143783136.1|1980475_1980811_+|ATP-binding-protein
MHLLYGLAGSGKTTLSRELSRDGRGVRFTLDEWMLRLHPGLDFESTKYGDKASDVRELMWTIAGCLCAANGCLQSAHRPVGGKIAVGLSRIPVTAVHLCRMGHTLFMPTPA
>NZ_CP041616.1|WP_165700068.1|1981047_1981887_-|CHAP-domain-containing-protein
MAQVRKERRTRSWLAGVAAITVALGGLTAPAVAQDASHAPSEFAEFAAGHTVNEAGYPDAEILAPAKGTGTVKANSAVNIRRGPHSGYYSTNGSYPNGTTLTLLCKTFGQKVTGPAGTTNRWYKTAGRKYVSGGYLVVTKTPGNCTEPTGDDYPWSGQCPTPPGVGNERDTWNYTKGQCTSFVSFRAQGRLGKNLSGLGQASEWNNRAPAKGISVGTMPLIGAVAVSESGTYGHVAYVTKVNSDFSFTVEEYNYVAKCKHGVRANLTLANSSFSSFIYP

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Crispr_ID: NZ_CP041616_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_6

2418560-2418662

Orphan

Consensus_repeat	Method
GTGGGCCCAGGGCACCCGACACGCCGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_6

>merge|NZ_CP041616|6|2418560-2418662|CRISPRCasFinder
GTGGGCCCAGGGCACCCGACACGCCGCACGGACCCTGACACTGTGCAGGACACGCGCGGCTTCCGGTGATAAGTGTGGGCCCGGGGCACCCGACACGCCGCAC

>NZ_CP041616|6|6|2418560-2418662|CRISPRCasFinder
GTGGGCCCAGGGCACCCGACACGCCGCAC	GGACCCTGACACTGTGCAGGACACGCGCGGCTTCCGGTGATAAGT
GTGGGCCCGGGGCACCCGACACGCCGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143783480.1\|2414028_2414865_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP041616.1\|WP_143785097.1\|2430739_2431237_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP041616.1\|WP_143783490.1\|2429232_2430738_-\|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl\|CDD\|225870
NZ_CP041616.1\|WP_143783477.1\|2412407_2413112_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP041616.1\|WP_143783481.1\|2414861_2415623_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|376667
NZ_CP041616.1\|WP_143783479.1\|2413649_2413967_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143783488.1\|2425348_2427550_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|237586
NZ_CP041616.1\|WP_143783485.1\|2418810_2420028_-\|glycogen-synthase	unknown	unknown	gnl\|CDD\|273997
NZ_CP041616.1\|WP_143783484.1\|2417581_2418514_+\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379128
NZ_CP041616.1\|WP_143783474.1\|2409742_2410123_+\|DUF3037-domain-containing-protein	unknown	unknown	gnl\|CDD\|378608
NZ_CP041616.1\|WP_143783489.1\|2427555_2428311_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|236124
NZ_CP041616.1\|WP_165700094.1\|2428352_2429096_-\|beta-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|273824
NZ_CP041616.1\|WP_143783478.1\|2413268_2413640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143783482.1\|2415619_2416402_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP041616.1\|WP_165700093.1\|2416445_2417195_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143785095.1\|2421410_2422331_+\|cyanophycinase	unknown	unknown	gnl\|CDD\|131124
NZ_CP041616.1\|WP_143783491.1\|2431287_2432289_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP041616.1\|WP_143783475.1\|2410119_2410650_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240137
NZ_CP041616.1\|WP_143783487.1\|2422351_2425240_+\|cyanophycin-synthetase	unknown	unknown	gnl\|CDD\|237586
NZ_CP041616.1\|WP_143783486.1\|2420083_2421337_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234846

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143783480.1\|2414028_2414865_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	8.54608e-52
NZ_CP041616.1\|WP_143785097.1\|2430739_2431237_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	2.24702e-07
NZ_CP041616.1\|WP_143783477.1\|2412407_2413112_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.43715e-71
NZ_CP041616.1\|WP_143783481.1\|2414861_2415623_-\|TSUP-family-transporter	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.1622e-20
NZ_CP041616.1\|WP_143783488.1\|2425348_2427550_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	3.28265e-87
NZ_CP041616.1\|WP_143783485.1\|2418810_2420028_-\|glycogen-synthase	gnl\|CDD\|273997	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP041616.1\|WP_143783484.1\|2417581_2418514_+\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.00626955
NZ_CP041616.1\|WP_143785095.1\|2421410_2422331_+\|cyanophycinase	gnl\|CDD\|131124	TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. [Energy metabolism, Other].	6.81948e-79
NZ_CP041616.1\|WP_143783489.1\|2427555_2428311_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|236124	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI.	9.05823e-169
NZ_CP041616.1\|WP_165700094.1\|2428352_2429096_-\|beta-ketoacyl-ACP-reductase	gnl\|CDD\|273824	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.06834e-116
NZ_CP041616.1\|WP_143783487.1\|2422351_2425240_+\|cyanophycin-synthetase	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	0
NZ_CP041616.1\|WP_143783482.1\|2415619_2416402_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.66673e-96
NZ_CP041616.1\|WP_143783490.1\|2429232_2430738_-\|tripartite-tricarboxylate-transporter-permease	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP041616.1\|WP_143783491.1\|2431287_2432289_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.40159e-68
NZ_CP041616.1\|WP_143783475.1\|2410119_2410650_+\|hypothetical-protein	gnl\|CDD\|240137	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	2.88026e-63
NZ_CP041616.1\|WP_143783474.1\|2409742_2410123_+\|DUF3037-domain-containing-protein	gnl\|CDD\|378608	pfam11236, DUF3037, Protein of unknown function (DUF3037). This bacterial family of proteins has no known function.	2.26155e-50
NZ_CP041616.1\|WP_143783486.1\|2420083_2421337_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0

>NZ_CP041616.1|WP_143783484.1|2417581_2418514_+|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein
MIEDQSGLATTEQLRAHGWTADAIRHRRGRTIQRVYPGVYAPHLGPLDIDARLMAAYLWAGESAVLTGRVALDRHGLTLDVLGTCVFLVPSTRRSRQISGIRTVRTDQPITVARHHEGVPVTSVARALCDAAIHQGLAGQRLEAVTISALQHRLTHSALLADELSSHRRREVGAIRSGLDLFTKGAWSLPEAALARVLEADPTLPRFVLNTSLWTVDQVRIGCPDAYFPDSGVAVQVHSRAHHSGLDADGLDRWTATVEKDARLVEHGVIVVPITPRSIERRPDQVVHRLKQAVAVNAGRDMSHVLLHKP
>NZ_CP041616.1|WP_165700093.1|2416445_2417195_+|hypothetical-protein
MADLPASVRVALWATTALGGLVDLEEVPHRAMPDLDHVDGLVPQLALWRDLGERLVLLALPRPGDLTSMPRGPADLVAAATEAEELVYVTGLGGALVPDIHTFGPEGDQGWQALWTSFDADPVPQHVVQQLSLPDVELQLRREVAALTAELDLAPGQPLTGHGLEGAVRGSLDQEWGLPDGLPARSVRVIELAGAITGLAEAGLDHRLHSADSSSTLQRERILRQLHDVAAKALVAATNVGALHLAGWR
>NZ_CP041616.1|WP_143783482.1|2415619_2416402_-|ATP-binding-cassette-domain-containing-protein
MSDVLEFAGVGVRRGGNVLLDDIDWSVEEGERWVVIGPNGAGKTTLLQIAAARIHPTTGVAGILGEVLGTVDVFELRPRIGLSSAALAERIPPEEMVRDVVVTASWGVTGRWREEYDELDTGRAEGLLAALGVEHLADRRYSTLSEGERKRVQIARALMTDPELMLLDEPAAGLDLRGREDLVGRLSVLAEDIESPAMVLVTHHVEEIPPGFTDILMLRDGKVVAAGPLETTLTGENLSAAFDIPLVVDRRGARWSARAE
>NZ_CP041616.1|WP_143783481.1|2414861_2415623_-|TSUP-family-transporter
MSWLEVSAILLAGVWAGTINTVVGSGTLVTFPTLLFFGYPPVSANISNSLGLVAGGLSGTWGYRREIRPLRALLVRLAPASLLGAIIGALLLLVLPESAFEAIVPALIVLALVLVVFGPRLNAWAAQHHATEITGSRFVILIVGILFSGMYGGYFGAAQGVLLIGLMSVLLPNGLQEINGAKNVLGLIVNFTAAMVFLVVDPSQVNWVIVGLIAIGAFIGGLLGARIGRSMPPWLLRLTIVVIGVVAIVVLLV
>NZ_CP041616.1|WP_143783480.1|2414028_2414865_-|RNA-methyltransferase
MTQHQLPAGVTWIDDASDERVRDYVGLTDVALRRVLEPVQGLYLAESAKVIRRALGAGHRLRSLLLIPRWLEDLSDLVQTAIDDSAPVYVMEPAVAEEMTGYHLHRSAIASMHRPVLPPVSEVLRGARRVAVLEDIVDHTNVGAVFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPGGIGTLREAGFTVAAFALREDGLELRQLAAAQPERLALVLGTEGDGLEESTIAQADLAVRIPMAGGVDSLNVGAASAVAFWALQPQT
>NZ_CP041616.1|WP_143783479.1|2413649_2413967_+|hypothetical-protein
MIAVVTILLAFPLGLLLSSRLAANLTYAVVYLWCFVFQTLYLLLPSLGADGAAGTAPFNPEVFPLDYGLVTLTVPVAGFALVAAGHWVRTRRQHSRRRAAAAQVA
>NZ_CP041616.1|WP_143783478.1|2413268_2413640_+|hypothetical-protein
MQPLSTRQHIGLGLAGLLSALSVPDVFTPTPAGTVGPPLAVLVLTSALGLIGVIAVVLAWRGNAAALRVAAGAVILLMLAAVPAFFVDVPAVVRVIVAASVLVTVASVVLMLSAAHRAVPVMD
>NZ_CP041616.1|WP_143783477.1|2412407_2413112_-|response-regulator
MTIRVLLADDHPVVREGLRALLSTIRGVEVVGEAVDGAAAVRETLLLRPDVVLIDLRMPGTDGVEAIRQITQAAPATAALVLTMYDDDATVLTAMQAGARGYLLKGAEQEEIVGAIRAVATGQAIFGPGIATRVLDVFAHATPRDPGVDNFPTLTARERQILVLLAEGRRTSEIAAELFLSPKTVSNNLTGIFAKLEVSDRAAAMLVARQRGLGTEPTSPPTSPPPSPPTFPPT
>NZ_CP041616.1|WP_143783475.1|2410119_2410650_+|hypothetical-protein
MSTHLTWHPFTERPDLVAAPVRAALEGTPLAGSVEVTQIDPDLADTQALVEATDITLEESANCIVVLGRRGEVERVAAGLVLATTRADVNSTIRKSLDVRKASFMPMERAVAETGMEYGGITPVGLPGDWPVLVDSRVVDAERVVIGAGVRGAKLRLPGALVADLPGVQVIEGLAR
>NZ_CP041616.1|WP_143783474.1|2409742_2410123_+|DUF3037-domain-containing-protein
MSTYDYQYVTLRLVPRVEREEFINVGVVLYSQEAEFLRGAVHLDPDKARALAPELDVDAVRASLDAVCRVAAGEHSPATPRLDRLGPRFGWLSAPRSTIVQPGPVHGGTTEDPAATLDHLVRILVT
>NZ_CP041616.1|WP_143783485.1|2418810_2420028_-|glycogen-synthase
MRIDILTREYPPNIYGGAGVHVAELTRALRALPDVTVSVRAFDEPVDEPGTTGYPPPENLVDANAALKTLGVDVAMASDVVAEQADLVHSHTWYANMGGHLASLLGGMPHVISAHSLEPMRPWKAEQLGGGYRVSSWAEKTAYEAAAGVIAVSAGMRKDILASYPDIDPAKVHVVHNGIDSELWQRNTSEEAKAMVRELGVDPDRPSVVFVGRITRQKGLPYLLRALAELPSEVQVVLLAGAPDTEEIKAEVIGLVDTLREGRGEAGGVTWIGDMLPREKVIAVLSHATVFLCPSVYEPLGIVNLEAMACGAAVVATATGGIPEVVVDGETGWLVQIDQVTDGTGTPTDPDKFVADLAATINDAVSDPERAARMGQAGRERAVEHFSWTTIAERTLEVYRTVLAD
>NZ_CP041616.1|WP_143783486.1|2420083_2421337_+|glucose-1-phosphate-adenylyltransferase
MAARTGRQKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGIYRLIDFALSNIVNSGCLKIVVLTQYKSHSLDTHVTRTWRMSTLLGNYVAPVPAQQRVGKSWFSGSADAIYQSLNLVHDERPDIIVVVGADHVYRMDFSQMIDQHVETGAGVTVAAIRQPLGLADQFGVIEVNESDPRHIADFLEKPKSPKGLPDSPNEVLASMGNYVFDADVLEQAVRDDAADEESSHDMGGDIVPAFVRRGEGYVYDFKDNDIPGATDRDRAYWRDVGTMDSYYDAHMDLVSVHPVFNLYNDRWPIYTNYGNHPPAKFVHGSQDRVGQALGSMVSPGAVISGATVSDSVISPKVRVHSFSNVSSSVILDGVEIGRSCQIHRAIIDKQVRVPSGVSIGVDHDQDRARGFTVTDSGLVVVPKGMAIEG
>NZ_CP041616.1|WP_143785095.1|2421410_2422331_+|cyanophycinase
MTPVSDPSESPSGDQVNRTLLVIGGAEDKRRRVVVLKRFVRLAGARDAKIVVIPTASSLAEEAFEVYQSVFGRQHVSDISLVNPQTRLAAAEPDLIEAIDNATGIFLTGGNQLKLGQLIVGTPVHEAITRAYHRGAVVAGTSAGASVLSQFMISMGEEGVAPRQRVSQLSAGLGLLPGVILDQHFGQRTRYARLLSLIAASPSLLGVGIDEDTAAEVVNERTMTVVGSGAVYVVDARAAVSDAHEARRDAPLMVSGAVVHSLPYGSCFNLEAAQLTDFTEMHPEVAVVTSPTDVHDTANAAAALRR
>NZ_CP041616.1|WP_143783487.1|2422351_2425240_+|cyanophycin-synthetase
MSHAQSPTAPATPDLRIVEQRVYRGPNIWNYEQAIHLVVDLGVLEEYPTNLLPGFTEQLLEWVPALTNHVCSRGKPGGFVERLHEGTWVGHVSEHLALQLQGEAGHDLRRGKTRAVRGTRGHYNVIYSYIDERVGLAAGELAVRMVNAAVAHDESFDFSTELDDFLRLAQRAAFGPSTNAILEEATARDIPFIRLNNASLVQLGQGVHQQRIRATMTSKTSALAVDLAGDKSLTNTLLSSAGLPVPLSDTVRTEDGAVAVAKQIGFPVVVKPLDGNHGRGVGINLRNEAEVRAHFPVAAEQSRRGIMVVESFITGNDYRCLIVGGRMQAIAERVPAHVVGDGTHTINELVEITNADPRRGVGHEKVLTRIAVNDAAVALVRHQGFELDQVPPEGTMIKLALTGNMSTGGISVDRTFDAHPENVEIAEEAARLIGLDVAGIDFICPDISAPVRETGGAICEVNAAPGFRMHTHPTVGEPQYIAKPVVDLLFPPGSPARVPIVAVTGTNGKTTTSRMIAHIMKGLGKQVGMTSTDGIVIDERLVKRADASGPKSARMVLQNPRVDFAVMEVARGGILREGLGYDRNDVAVVTNVAADHLGLRGIDTVEQLATVKRVVVEAVPRNGFAVLNADDPNVRDMRRHCSGSVIYFSMQPPGSPERTFIDARLRRGGRAVVLEPTDRGEMIVIRHGRRSMQLAWTHLLPSTFGGAARFNVANAMAAAGAAFAVDVPLHDIRQGLRTFTTSYYLSPGRLNMLDVKGVSVIVDYCHNPAGMRAIGEFVDNLAEQKEAALDNARISRIGVIGGTGDRRDADLVELGAVAAAHFDAIVVREDDNPRGRPRGQSAELLVQGINERIAAGEARVRKIDTVLAEVDAVRHAMVLANPGDLVLAAVDKHARVLAELEEMSSSAYAGSRADEVRTGDPDLDPVELGEAAEASAEEARGDYAEYDAAEAAASADSGAAQH
>NZ_CP041616.1|WP_143783488.1|2425348_2427550_-|tetratricopeptide-repeat-protein
MTDDATTVEVTEVRLLEGPNLYFARPAVKVSLSLPGYQSLQASAVTAIAEAVGLRRAVPGKPHTEQRQRFLSRLAGTVLRRIADAVPSRVGARVRVGTDLDSVIVAFPWRHRGRALALGESLGPTLAGLLAGEDADELLTSGAVAVRAAEDASRPIQIRPRIPVASITGTNGKTSTTRLLAHMGMTGGLRCGWSSTEGVFIQGEIKVAGDYSGPSGGRNVLEDRSVELGLLETARGGLLLKGMGVSHNDVSIVTNVTADHLGMQGIDTVDQLAEVKSIITRVTRKDGWVVLNGDDPRVRAMAAQASGRIWMFSLDPDSPALRETVERGGRGMTILEGDIVILRRGADPDRLIRVLDVPMTLSGLSEHNIANALAATAGALGLGLPREAVIEGLRTFAPDLEHNPGRMNVWTLPVASGGTATMIIDLAHNEAGLEALLTVAEGLRPPGDRVHLGLGGVGDRTDDILIGLGEIAGRRADRVQIVHKGHYLRGRTTEGLESQFVQGLANVGAVSSGSSADEVEGLAALVEHMADGDVGALMVHRDREGVVAWLTEHGARQDSPRQIRRKVVAARGEHELEAVLSAIEDRPPRERVEAARTLLEQSPEDPRLIFELAAALDAADQGTQAVSRYREALAGRLREPHRFRALVAMAADLRALGRHAEAEEALSAVAVQRTDSATVVALQALLDVDAGRGEAGVARLIEYLMTHATAADDAGQRESVLAMADQLRAATDH
>NZ_CP041616.1|WP_143783489.1|2427555_2428311_-|enoyl-ACP-reductase-FabI
MLLDGKKLLVTGVLMDSSIAFHVARLAQEQGAEVVLTSFGRTFRITQSIAKRLPVTPEVVELDVSNQEHLDTLAERLREHTDHLDGVLHSIGFAPRGAFDFMNAPWEDVATALQVSAYSLKSLAVAALPLMSEGGSIVGLTMDAQVAWPVYDWMGVAKAAFEATNRYLARDLGAQGIRSNLVAAGPIATTAARSIPMFEQFAKWGERAPLGWDLKDAEPAAKACVALLSDWFPATTGEIVHVDGGFHAMGF
>NZ_CP041616.1|WP_165700094.1|2428352_2429096_-|beta-ketoacyl-ACP-reductase
MTETQQTETPSAPPPTVLVTGGNRGIGLAIARSFAAAGADVIITHRSGTPPEGLRGVLCDVTETESVDRAFTEAEELLGRPIEVLVANAGITKDTLMMRMSDDDFSSVLETNLTGAFRCARRASKGMMRMRKGRIILISSVVGLYGSPGQTNYAASKSALVGLARSITRELGGRGITANVVAPGFIETEMTAELSDDLRKQYLSGIPAGRFATPEEVAGAVRFLAGPDGGYISGAVIPVDGGLGMGH
>NZ_CP041616.1|WP_143783490.1|2429232_2430738_-|tripartite-tricarboxylate-transporter-permease
MESLTSLLGGFGDVLTLQNLFYVFLGALIGTAVGVLPGMGSAMAVALLLPVTFTLEPLSALVMFAGIYFGGLFGDSIAGILMNTPGNSTAIAGTFEGHRMAKDGRAPQALATSAIGAFIGGLIATTLVVFFAPYLAEWATRFGPAEYFALAIFAFVAISAVVADSVLKGLAALLIGLVLAMVGTDQVTGTQRFTFGNTAMFDGVSIVVITVALLAVGEVIFVASKIGRPDDQSLMASKGRPFLSRAEFREALPAWLRGTGFGVPFGVIPAGGAEVPTFLSYGLERRLDRRRKNPKFGTGAIRGVAGPEAAGNATSGTAMGALLALGLPTSATAAMMILAFRQYGMQPGPLLFDRNADLVWALLASLFIGLFVLLLLNLPFAPLWAQLLKLPKAYLYAAIGMFSCLGVYAASAAIVDLVMMIGIGALGFVMRRYDIPLAPVLIAVILGPLAEESLRLAMNNSQNDPMILIQTPITIGLYAFLVLGIAVTVIGRLRNRTKADF
>NZ_CP041616.1|WP_143785097.1|2430739_2431237_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MQHGFWTGRSGLVVPAIIIALGFFLIYGINQMEVGDEDTLFGPKAFPWIAAVACFVVGALLAVQVIRSPEVPEAMLQEDGSIRAGSHSNWPAALGALGSFVGFALILETVGWIIAAALVFWGLTVSLGNRRYALNLLIGLAMSSIMQLVFSGLLGLNLPSGVMGG
>NZ_CP041616.1|WP_143783491.1|2431287_2432289_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MRIPTPLQWVLGVLAVAALVVAAGVDAHNASSRADARTKLIVIAPAAAGGGWDLVARESQQALRTNGIVGNVQVINVPGAAGTIGLSQLSRMDGDSSTVMVTGTVMLGGIALNDGIDLSEMTPVARLAEDFEVIAVPADSDYATLDDFINDWAADPAALPIGGGSAGGIDHMVAAMLAREAGIDPGQIQYAAFAGGGDLTINLLSTAPGTPNVGISGFNDFRDLIEDGRFRALAVIAPARLEGLDAPTMEEAGYPAVDLVNWRGLIAPAGLTQEEQQVLIEITEEMVQTPQWQAAVERNRWEESLLTGDEFGEFLETEQVRISQILDDLGLTQ

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Crispr_ID: NZ_CP041616_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_7

2856965-2857061

Orphan

Consensus_repeat	Method
TCCTCGCGGGCCTGTCAGCCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_7

>merge|NZ_CP041616|7|2856965-2857061|CRISPRCasFinder
TCCTCGCGGGCCTGTCAGCCGATAGACCCCCTGCATCGGCTTCCGCGACCTGCTCCGGGCCTCGCAAGCTCGTGTCCTCGCAGGCCTGTCAGCCGAT

>NZ_CP041616|7|7|2856965-2857061|CRISPRCasFinder
TCCTCGCGGGCCTGTCAGCCGAT	AGACCCCCTGCATCGGCTTCCGCGACCTGCTCCGGGCCTCGCAAGCTCGTG
TCCTCGCAGGCCTGTCAGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_165700110.1\|2864751_2865336_-\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|376863
NZ_CP041616.1\|WP_143783834.1\|2858351_2858561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143783836.1\|2862394_2862676_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|237712
NZ_CP041616.1\|WP_143783835.1\|2858653_2862229_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP041616.1\|WP_165700109.1\|2853667_2854249_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP041616.1\|WP_143783831.1\|2854252_2855872_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP041616.1\|WP_143783829.1\|2852096_2853608_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_CP041616.1\|WP_143783828.1\|2851380_2852061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143783838.1\|2863684_2864542_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP041616.1\|WP_143783837.1\|2862703_2863678_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP041616.1\|WP_143783832.1\|2856012_2856918_+\|DUF2236-domain-containing-protein	unknown	unknown	gnl\|CDD\|378343
NZ_CP041616.1\|WP_165700108.1\|2846311_2846842_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|367957
NZ_CP041616.1\|WP_143783840.1\|2865619_2866096_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP041616.1\|WP_165700107.1\|2844958_2845855_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|184724
NZ_CP041616.1\|WP_143783839.1\|2864555_2864750_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038
NZ_CP041616.1\|WP_143783841.1\|2866268_2866886_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP041616.1\|WP_143783827.1\|2849590_2851132_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP041616.1\|WP_143783825.1\|2847443_2848556_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP041616.1\|WP_143783842.1\|2866887_2869140_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236794
NZ_CP041616.1\|WP_143783826.1\|2848778_2849594_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143783827.1\|2849590_2851132_-\|IS21-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.35e-12
NZ_CP041616.1\|WP_165700110.1\|2864751_2865336_-\|DUF177-domain-containing-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	2.92244e-30
NZ_CP041616.1\|WP_143783842.1\|2866887_2869140_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP041616.1\|WP_143783835.1\|2858653_2862229_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP041616.1\|WP_165700109.1\|2853667_2854249_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.4775e-32
NZ_CP041616.1\|WP_143783831.1\|2854252_2855872_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP041616.1\|WP_143783829.1\|2852096_2853608_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.15342e-61
NZ_CP041616.1\|WP_143783838.1\|2863684_2864542_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.91449e-112
NZ_CP041616.1\|WP_143783837.1\|2862703_2863678_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	7.7055e-131
NZ_CP041616.1\|WP_143783832.1\|2856012_2856918_+\|DUF2236-domain-containing-protein	gnl\|CDD\|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	1.08363e-49
NZ_CP041616.1\|WP_165700108.1\|2846311_2846842_-\|DUF559-domain-containing-protein	gnl\|CDD\|367957	pfam04480, DUF559, Protein of unknown function (DUF559).	0.000352423
NZ_CP041616.1\|WP_143783840.1\|2865619_2866096_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.52997e-81
NZ_CP041616.1\|WP_165700107.1\|2844958_2845855_-\|30S-ribosomal-protein-S16	gnl\|CDD\|184724	PRK14520, rpsP, 30S ribosomal protein S16; Provisional.	4.99961e-58
NZ_CP041616.1\|WP_143783839.1\|2864555_2864750_-\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	7.38309e-24
NZ_CP041616.1\|WP_143783841.1\|2866268_2866886_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	5.38792e-64
NZ_CP041616.1\|WP_143783836.1\|2862394_2862676_-\|acylphosphatase	gnl\|CDD\|237712	PRK14422, PRK14422, acylphosphatase; Provisional.	1.57688e-32
NZ_CP041616.1\|WP_143783825.1\|2847443_2848556_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	8.51484e-68
NZ_CP041616.1\|WP_143783826.1\|2848778_2849594_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.02307e-56

>NZ_CP041616.1|WP_143783832.1|2856012_2856918_+|DUF2236-domain-containing-protein
MPIRRRLSASLRHRVAGPDADRRAAAIWLSPGERRFAPTDPICRVHNHAAMYAGGLRALLLQSLHPLAMAGVGEHSGYRGDPWGRLQRTSEFIAMTTFGPVDGAQRMVDHINRVHDTVSGTAPDGRPYDARDPHLLSWVHIGEIDSFLTSYQRYSRTPLTPSDADTYVAQTGWAASELGVTDPPQTVADLQSQLAAYRPELQVTDGARDAAAFLLREPPLPWAARPGYWMLTAGAVSMLPDYARDMLGLRVGKRLDPVAERLLLRPAGRVGTAAVGWALSEPNDPRNSPESSAVANEEASP
>NZ_CP041616.1|WP_143783831.1|2854252_2855872_-|signal-recognition-particle-protein
MFNSLSDRLTETFRNLKRKGALSETDVNKTVRDIRMALLDADVALPVVKQFTGQVRDRALGAEVSKALNPGQQVVKIVNEELVSILGGQTRRLNLAKNPPTVIMLAGLQGSGKTTLAGKLGFWLKEQGHTPLLVAADLQRPNAVTQLEVVGERAGVPVFAPERGNVFGHDAALESGEGTRSFGDPIDVAVDGVAHARDKNHDVVIIDTAGRLAVDVDLMRQAHDIRMETHADEVLFVIDAMIGQAAVDTAKAFADGVGITGTVLTKLDGDARGGAALSVATVTGEPILFASTGEGVKDFEIFHPDRMAGRILDMGDVLTLIEQAEKAFDQAQQREMARKFMAEEDFTFVDFLEQMQAIKKMGSLKQMLGMMPGMQQMRAQLDSLDDKEFDRVEAMVRSMTPFERMHPKQINGSRRARIAKGSGVSPSEVNQLLERFGQAQKMMRQMRKGGGMPGMPGMPGMGGGAAKGKAKGPQSKKGKSGNPAKRAEQERLAAQKAEESRGNAMGSAFGLPGGGEDAAEQDLSSLKLPAGFDKFLKDQ
>NZ_CP041616.1|WP_165700109.1|2853667_2854249_+|Uma2-family-endonuclease
MKERGIMGLMPTLPRSGPLTLEDFEAIRDVDDGHRYELIDGTLVVTPSPVPAHQNAVQELFLRLHDTKPADIRVFVAPLDIRFAGDTVLQPDVLVVPRSAVGGRRIEGDPLLAVEVLSPSTRTFDLGAKLLRYQRAGTPAYWVIDPDEPSLRVWELRDDVYVEVAHVTGDEVARLSLPWPIEIAPSHLVDDLR
>NZ_CP041616.1|WP_143783829.1|2852096_2853608_+|FAD-dependent-oxidoreductase
MRVDAVVIGAGHNGLTAAAYLAKAGRSVLILERSEHAGGAARSDQVFPAHDARLSAYSYLVSLLPDQIIDELGLDLQLVRRRISSYTPVGDGGILVDNGDAVRTARDLGPDAQAWDDFYGMTGELAQRLFPTVTEPLRSRDDVRSLVGDEAWRDIFERPLGEAIETRFTSDIVRGIVLTDGLIGTFGQPGDAERLINRCFLYHVIGRGTGDWDVPVGGMGAVTDGLLRTAQEYGAQLRTSTTVTSVSTNGREAVVTTADGLEVRAGQVFANCAPNVLDRLLGETPSRPEPEGAQLKINMLLSRLPALKDERTTPEQAFAGTLHINEGYDQIATAYAQAAAGQIPDVPPCEVYCHSLSDDSILGPDLVASGAHTLTLFGLHMPARLFREDPVGARERAAELTMASINSVLAEPIEDCLLAPDTIEVRSPLDVEASVAMPGGHIFHGDLQWPFAESADDVGRWGTETRHANVFLCGAGARRGGGVSGIPGRAAVAAALGEDELSR
>NZ_CP041616.1|WP_143783828.1|2851380_2852061_+|hypothetical-protein
MSGMRVRAGVLLLVLAAVTACSDTPVGPEDSTSGPPGQDAPTTEAANPPGQDQSLPEVTRQDMLQIWWDERGLEGPPEQVDLIREVSDTEYMPVQAECLTAVGFPPEVSGDSYTWEVPAAQSEAFTLADYRCAAQYPRLLAYSQPYTDEQMTLIYNWVAEETIPCYAEQGHHVSGMPTLESFLEHYRTTQTWWLPKDGMDPITFEEQEALELVCPRLPPQEVLYGE
>NZ_CP041616.1|WP_143783827.1|2849590_2851132_-|IS21-family-transposase
MQILEAFDTTECAHSAGELAGVDPKTVRRYVAARDSGAPVTGPGRRPRIIDEHLPKVEEWVDRSEGKARADVIHARLVGLGFSGTERTTRRAVADAKAAWRAGNRRTYRPWISEPGLWLQFDWGAGPQVPGPDGVLRPTLLFCAWVAWSRFRVVIPTWDQTLPTLVACLDATLRTIGGVPAYVLTDNAKTVTIDHVAGVPVRHPELVKVARRYGTTVHTCVPFDPESKGGTEATVKIAKADLVPTQANLLEAYASFAALEAPCAAFMAKVNGRTHRESARIPADALALERARLHTLPSGPHTMALGLARTVSTDQTIRYNSVRYSTPPGLLGTQVWARVAGTELVIVADLDALPVEPSWAHGRAGLVEVARHATSTPGNPRIEPAHYPDHPQEPDGAPRVPKPKARTDAEAAFLDLGDGASTWLVEASAAGTVRIRAKMADALQLAALIGTERVDAALGVAAAAGRFGQTDLASIADHLAAGTSTAGLVVADEDATTQPGTTGWAGFATGSTR
>NZ_CP041616.1|WP_143783826.1|2848778_2849594_-|ATP-binding-protein
MSPANTPKATTRTSGPGASPPLPADLEQLLRRMRLPYLREAAPGVLATAKAQRWDPGEVLKVLLDEEVRGRDEATKAMRRKAAGLPAGKTLDSWREADSSIPVPTQSGLATLEWVGRGENLAISGPSGTGKTHFVEALAHKVIDEGMRVSWFTLESLTNTIGRAAVDGSISKVLARITRAELVVVDDIGMLPSGQAAAEAFYRLVDATYERRSLAVTSNIHPSGYDTIMPKTLATAAVDRLLHHAHVIITEGTSLRLSEATTGRGVIPLTT
>NZ_CP041616.1|WP_143783825.1|2847443_2848556_-|amidohydrolase-family-protein
MSQPVLHVRGQVLVGPEETRDEIWVVDGRISLTAPTGHAGDVETVEGWALPGLVDAHCHVGLEATGAVPPERAEEHALANRDAGALLLRDAGSPADTSWVQDREDLPRLIRAGRHIARTRRYIRNFAHEIEPEDLVEFVRQEARRGDGWVKLVGDWIDRETGDLNTCWPVEALTAAIAAAHEEGARVTAHCFGEQSLRDFAAAGTDCIEHATGLLDDTIDAFAEQQIAIVPTLVNIDNFPKFAEAGRGKFPTYADHMMDLYERRYETVAKSREAGVPVYVGTDAGGQLPHGLVAREIEALTMTGMSNVEAIGAATWAAREWLGRPGIAEGESADLVVYRDDPREDLRTMADPHRVILRGHAHESQGRHHH
>NZ_CP041616.1|WP_165700108.1|2846311_2846842_-|DUF559-domain-containing-protein
MRVVKPARAALQVAAAFGVQAGLVSADGCLRMNLCTREDLAAALSAGGYGHGLERARRVTEHARDNSESAGESRCRWIFHLMGLPEPELQAGITDSGQFVGRVDFLFREQRTVVEFDGLGKYDAREDLIKEKKREDWLRSLGYTVVRLTWADLAHPERVRAKVLAGFALAQRQPAS
>NZ_CP041616.1|WP_165700107.1|2844958_2845855_-|30S-ribosomal-protein-S16
MAVKIRLKRMGKIRAPFYRVVVMDGRKKRDGRAIEEIGRYVPSEEPSLIEVDSERAQYWLSVGAQPTEQVAALLKVTGDWQKFKGEEGAEGTLKVAEPRPDKKALYEAALAAAEGKEASTADTPRKAKKDEAKADDTKAEPKAKKDEAKADDTKAEPKAKKDEAKKDEAKKDDAPKVEKADEAAATEAPAEEAKADDAKAEETAPEATAPAALVDGGFGADSAAATEDGSAPEGFTVKGNKDSMKYHVEGSQWYDATAAEVWFRSAEAAKAAGFEPAGGAAKQSADAGAEIGTDKAEG
>NZ_CP041616.1|WP_143783834.1|2858351_2858561_-|hypothetical-protein
MIAIVLAMLVCVALGGLVVGYVAVEARRDGRELFTPEGEEMLASARRRQQELRGRGERLARKTVHSVRK
>NZ_CP041616.1|WP_143783835.1|2858653_2862229_-|chromosome-segregation-protein-SMC
MYVKSLTLKGFKSFASATKLRLEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGKMEDVIFAGTSGRAPLGRAEVTMTIDNTDGALPIDYSEVTISRTMFRNGGSDYAINGTSCRLLDIQELLSDSGIGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHRKRKEKALRKLETMEGNLTRLGDLTSEIRRQLGPLGRQAETARRAASIQADVRDARLRILADDLVQLTSTLEQELADETAMINRRAAMQQSLAAAQSTVTELEAEAAEAAPALNAAQDQFYALSALVERTSATADLARERVRLLASESEEEASGGPGEGRDPDKLRAQAVALREQEQTLAEEVAGIGEALQAAEQARRDAEAAHHDEQQRLTRLARAAADRREGLARLSGKVAAARSRQEAGEAEIGRLRAALESIAARATAAEQEFAALEGRVLDVEEGEEGLDQEYETAEAARTTAAAEVERLTDEVRAAESQRASLTARCEALELSLRRKDGAAALLATADGRGVVGTVTSAVTVTHGYEAAIAAALGWAGDGLVMESLDHARDAVASLRSADQGRAALLVSQTAPAPNTIGWPDLGVGAVWAREVVSVTDAAAPAVELLLHRVAVVEDDAAAADLVSRHEITAVTREGDVYAAGWVRGGSSAAPSLLEIQSALDEAQQEASAAAARGEKATFALSRARQELEQHAAAAEQAMDRLNESDAKMAAVAEKLGQLGSAVRAARSEHERTTASITTAEKSLDSGRADLEGLIQRLADAEAEPGEEEPSTQERDRLAAVAAAARTKETEVRLSLRTQEERARALQGRAESLEAAARSEIAARERAAARRERRAHAARVATAVAEGSAYLLEEVRTLMGDAATVRDQARAQAAERETRLGEARGRVSTLGDELRDLTDSVHRDEVARAEQRLRIEALQTRAVEELGIDPETLIEEFGPHQLIPAIPGPDDDPDALPEPKAFVREEQDKRLRSAERKLNALGRVNPLALEEFAALEERHKFLTEQVDDLRRSKEDLLDIIKDVDERVERVFAEAFEDTAEQFAGVFSRLFPGGEGRLTLTNPDDMLTTGIEVEARPPGKKIKRLSLLSGGERSLTAVALLVSIFKARPSPFYIMDEVEAALDDTNLGRLITLFEELRDSSQLIVITHQKRTMEVADALYGVSMKGDGVTTVISQRIRDVQPQTA
>NZ_CP041616.1|WP_143783836.1|2862394_2862676_-|acylphosphatase
MVRALIFVRGRVQGVGFRWWMRSRALELGLVGHARNLPDGRVEVNAQGDKESVQALIKLLGEETSLRSRPGHVSGITVQWRDPAADLTGFRER
>NZ_CP041616.1|WP_143783837.1|2862703_2863678_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVVRRGLADHVVGRRIEAATITGTRVARRHDAGPADLAARLAGVDVLAADRRGKYLWLVVQAPGDDPHALVVHLGMSGQLLVEASDAPREKHLHASFDFADGGPQLRFVDQRTFGGLALTELIPDPYAGSHLTQTLHPPTPHAPTHHPPTPHASTHHLHGVPLPVGHIAPDPLEPVYDQRAVVRELKGRHTAIKRALLDQGRVSGIGNIYADEALWRAHVNPLRDTSVLTKPTIARVLDHAAAVMREALGQGGTSFDALYVNVNGASGYFDRSLHAYGREGEPCDRCGTPIRRESFMNRSSHYCPRCQPRPRVARAS
>NZ_CP041616.1|WP_143783838.1|2863684_2864542_-|ribonuclease-III
MTSSTGSAAGTSPAPPEPVHGEQRPLAGLSDYLTGVVGHVCDEALLRRAVTHRSYAYENGNLPHNERLEFLGDSVLGLVVTDTLFRRNPDLPEGQLAKLRAAVVNSRALADVARTMGLGDYILLGRGEEATGGRDKASILADTTEAVIGCVYVSVGLKAADAFVHHLLDPLMAHTANLGAALDWKTSLQELASAEAPVSPNYQIVEEGPDHDKVFTATAVVEGEVLGTGVGRSKKAAEQKAAEAAWKVLTERATAVEDAEVEQAAVGADGAGASTEPDSDTAPSA
>NZ_CP041616.1|WP_143783839.1|2864555_2864750_-|50S-ribosomal-protein-L32
MAVPKRKMSRSNTRSRRANWKASPVAVSTCPQCKEFKQPHMACPSCGTYAGRHYEAAERTEHQG
>NZ_CP041616.1|WP_165700110.1|2864751_2865336_-|DUF177-domain-containing-protein
MATQDAASPWVFDTRELVRRAGAMKETSRVVTAPDQIGTDVIAIKPGDPVDLDLRMESVMEGVLATGSVRASATGVCVRCLDDLDLPVDVTFQELFVYRERAAHHHQVAPEQDEQDDVHELEDDLMDLEELVRDAVVTALPFQPVCRDDCPGLCPECGARLEDDPDHHHDVIDPRWSALADLAQPGTDDEKKRN
>NZ_CP041616.1|WP_143783840.1|2865619_2866096_+|pantetheine-phosphate-adenylyltransferase
MSRCLCPGSYDPVTNGHLDIIVRAAALYDEVVVGVLHNPSKSGRFPVEQRIEFIRQALPDDLSVRVEAFGGRLLVDIAQDLGATAIVKGLRGGTDFAYELPMALMNRHLTGVETVFLPGDPALEHVSSSLVTEVATYGGDVTGLVPDHVRDALVARRG
>NZ_CP041616.1|WP_143783841.1|2866268_2866886_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MTRIIAGEFGGRTLATPRGADTRPTTDRVREAIFSRIESLFDLTGARVLDLYAGSGALGLEAVSRGGESVLLVEADRRTARLIENNVSELGLRGARVRAEKVDRVLERGPGGEAFDLVLLDPPYPLGEENLAHTLGLLVAQDWLSRDALVVVERSARSPEPTWPEGLSAIRSRTYGETAIHLAEPSGDPDESDPAPDASPASTGS
>NZ_CP041616.1|WP_143783842.1|2866887_2869140_-|DEAD/DEAH-box-helicase
MAELPTLDVKLRSLVGKTAAPLAKRDLVTVRDLLDFWPRTYLDPTRPSDFSALHDGEYVVILADVKSAVTRRMRQRRGSMLIATIEDGSGNLLELTFFSAYGHESALVPGRRVLVSGTVSTYGGRRQLAHPEYEALRAGAEASSTFGEGPIPVYSQIPKMTSMRVAAAVDLVLHAVDDVPDPIPVQVRAKHGLPPLSNAYTMLHQPRSTQEHVRARWRMKFQEAFVLQAALARMRHSSDAVPAVPRGPVPGGLADQFRQRLPFALTDGQESVLADIVSDLDSTVPMHRLLQGEVGSGKTVVALLAILTAIDAGAQAAVLAPTEVLALQHHRSMSAMLGPLAETGMLGGATDGTRVALLTGSQSAADRRANLLLAASGEAGIVIGTHALIQEHVQFADLGLVVVDEQHRFGVEQRDALRAKVEGASPHTLVMTATPIPRTVAMTVFGDMQTSTLTELPRGRQPITTHVVRGNQPTWVQRTWERVAEEVAKGGQVYVVCPRIGQQDDPDLPDGTTTGPGGPITPEDRDEPGSDDLLSGGAVVDEEASGKVELHGVFQVARALRELEVTSKLRIGILHGRLQPEEKDAIMRSFGRAEIDVLVATTVIEVGVDVPNATQMVVVDADRFGISQLHQLRGRIGRGTKPGLCLLMCQDGESQALERLEAVASTTDGFELARLDLAQRREGDVLGASQSGSRSSLRMLRLSRDEDLIVKAHEDAWQVVGDDPDLQDHPALRDELDRLDAERAAFLERG

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Crispr_ID: NZ_CP041616_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_8

3076861-3076952

Orphan

Consensus_repeat	Method
GCCTGCATCCTGAGCGTGCGTGCCTGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_8

>merge|NZ_CP041616|8|3076861-3076952|CRISPRCasFinder
GCCTGCATCCTGAGCGTGCGTGCCTGCTCGGACGAGCGCGCAGGAAACTCAGGCCAGCACCACGCCTGCACCCTGAGCGTGCGTGCCTGCTC

>NZ_CP041616|8|8|3076861-3076952|CRISPRCasFinder
GCCTGCATCCTGAGCGTGCGTGCCTGCTC	GGACGAGCGCGCAGGAAACTCAGGCCAGCACCAC
GCCTGCACCCTGAGCGTGCGTGCCTGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143784019.1\|3084899_3086054_-\|MreB/Mrl-family-cell-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP041616.1\|WP_165700123.1\|3068901_3069726_+\|Asp/Glu-racemase	unknown	unknown	gnl\|CDD\|226004
NZ_CP041616.1\|WP_143785152.1\|3066422_3067838_-\|amidase	unknown	unknown	gnl\|CDD\|180437
NZ_CP041616.1\|WP_143784015.1\|3079922_3081287_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340924
NZ_CP041616.1\|WP_143784008.1\|3067852_3068845_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240625
NZ_CP041616.1\|WP_143784009.1\|3069722_3070946_+\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|274380
NZ_CP041616.1\|WP_143785153.1\|3076150_3076816_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP041616.1\|WP_143784017.1\|3083530_3084019_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NZ_CP041616.1\|WP_143784021.1\|3086627_3087776_-\|phosphofructokinase	unknown	unknown	gnl\|CDD\|274155
NZ_CP041616.1\|WP_143784020.1\|3086064_3086634_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143784018.1\|3084015_3084891_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP041616.1\|WP_143784014.1\|3078644_3079904_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181234
NZ_CP041616.1\|WP_165700124.1\|3076971_3078507_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP041616.1\|WP_143784007.1\|3065888_3066395_-\|DUF3830-family-protein	unknown	unknown	gnl\|CDD\|315562
NZ_CP041616.1\|WP_143784016.1\|3081432_3083481_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP041616.1\|WP_143784012.1\|3073645_3075166_-\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|367155
NZ_CP041616.1\|WP_143784013.1\|3075370_3076102_+\|maleate-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|226004
NZ_CP041616.1\|WP_143784011.1\|3072208_3073456_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|349944
NZ_CP041616.1\|WP_143784022.1\|3087968_3090035_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP041616.1\|WP_143784010.1\|3070982_3072200_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224089

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143784019.1\|3084899_3086054_-\|MreB/Mrl-family-cell-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	5.24804e-171
NZ_CP041616.1\|WP_165700123.1\|3068901_3069726_+\|Asp/Glu-racemase	gnl\|CDD\|226004	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism].	6.39828e-49
NZ_CP041616.1\|WP_143785152.1\|3066422_3067838_-\|amidase	gnl\|CDD\|180437	PRK06169, PRK06169, putative amidase; Provisional.	0
NZ_CP041616.1\|WP_143784015.1\|3079922_3081287_-\|MFS-transporter	gnl\|CDD\|340924	cd17366, MFS_ProP, Proline/betaine transporter of the Major Facilitator Superfamily of transporters. This subfamily is composed of Escherichia coli proline/betaine transporter, also called proline porter II (PPII), and similar proteins. ProP is a proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in the bacterial osmoregulatory response. The ProP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.21914e-165
NZ_CP041616.1\|WP_143784008.1\|3067852_3068845_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	9.5235e-131
NZ_CP041616.1\|WP_143784009.1\|3069722_3070946_+\|M24-family-metallopeptidase	gnl\|CDD\|274380	TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.	4.24919e-137
NZ_CP041616.1\|WP_143785153.1\|3076150_3076816_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.01889e-36
NZ_CP041616.1\|WP_143784017.1\|3083530_3084019_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0.0071373
NZ_CP041616.1\|WP_143784021.1\|3086627_3087776_-\|phosphofructokinase	gnl\|CDD\|274155	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal. [Energy metabolism, Glycolysis/gluconeogenesis].	4.14383e-89
NZ_CP041616.1\|WP_143784018.1\|3084015_3084891_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.63623e-34
NZ_CP041616.1\|WP_143784014.1\|3078644_3079904_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181234	PRK08117, PRK08117, aspartate aminotransferase family protein.	9.93107e-161
NZ_CP041616.1\|WP_165700124.1\|3076971_3078507_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP041616.1\|WP_143784007.1\|3065888_3066395_-\|DUF3830-family-protein	gnl\|CDD\|315562	pfam12903, DUF3830, Protein of unknown function (DUF3830). This is a family of bacterial and archaeal proteins, the structure for one of whose members has been characterized. Structure 3kop probably adopts a new hexameric form compared to previous structures. The putative active is near the domain interface. 3kop is most closely related, structurally to Structure 1zx8, where the potential active site is located near residues E51 and Y53 (conserved in 1zx8). Beyond the two residues above, the other residues are not conserved. Also the shape of the active site differs from that of 1zx8. Structure 1zx8 belongs to family DUF369. pfam04126, which is part of the cyclophilin-like clan.	1.33334e-79
NZ_CP041616.1\|WP_143784016.1\|3081432_3083481_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	6.2694e-167
NZ_CP041616.1\|WP_143784012.1\|3073645_3075166_-\|DUF222-domain-containing-protein	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	7.48757e-14
NZ_CP041616.1\|WP_143784013.1\|3075370_3076102_+\|maleate-cis-trans-isomerase	gnl\|CDD\|226004	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism].	3.26241e-34
NZ_CP041616.1\|WP_143784011.1\|3072208_3073456_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|349944	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like. Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase; acetylcitrulline deacetylase), a unique, novel enzyme found in Xanthomonas campestris, a plant pathogen, in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction, and the product is N-acetyl-L-citrulline. Thus, in the arginine biosynthesis pathway, ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline.	8.57988e-108
NZ_CP041616.1\|WP_143784022.1\|3087968_3090035_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.55989e-67
NZ_CP041616.1\|WP_143784010.1\|3070982_3072200_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.96174e-108

>NZ_CP041616.1|WP_143785153.1|3076150_3076816_+|GntR-family-transcriptional-regulator
MDPLRQESTPAMIAGRVREAIATGVIAPGAQLGEANLAKELGVSRGPLREGLQRLTAEGLLISIRNRGLFVIEMTPERVSDMYVARQAVERAAAEQIHQADPVGSGEALLKVIDRMARTRDQRVQSEADVSFHELLVARAASPRLSRMHEILITETRMCITALTPLYTPGDQVRVEEHRAIAQSFVDGDAALTDRLLVAHMADAVERLTTAVTAARPGPTS
>NZ_CP041616.1|WP_143784013.1|3075370_3076102_+|maleate-cis-trans-isomerase
MPSIGLLYPGHSAEDDFPALEARIGGDLQLPLVHTSVGEDAHRVDALLDLGGPERLAEGARVLLAEHSPDVIMWACTSGSFVFGWEGAHEQVALLEQATGLPTSSTSIAFVEACRSLDLTRVSVAASYPEDVAQEFVSYLGRGGIQVTAMGSHGIVTAAEVGTLGYAEVEAIVRGADLTGGAQAVLVPDTAMHTLEWIEPLEQAAGVPVLTANQVTIWQGLNLLGPIPHISALGTLFTRGGGD
>NZ_CP041616.1|WP_143784012.1|3073645_3075166_-|DUF222-domain-containing-protein
MKSSGVDTTAGQDLAGVDLPGVDLPGSDLPGSDLPGSDLPGAEGEVVAGFGAWEAAVRTDLGEAGDPESAQFWALVAQIDQAEAEADAGADGGLVGGGRWVDPAQELMVGLAGAGANLARASAVDAEDLVRVFEPGIVSALETVGRVRAQVEGLGFALAVEASTRGLPTQVGLTLGEWLRVRCPWISRQEGAQIADIVRAGKTPWGTQLGADVAAGITPVRRAWRVAKTMFRLAGCLQVDQQIDYAQIATSAAANPDITDPELELVCKKLLIDLLDKKPREDAKRFAHELRCVSRRPLATGLTRLTIDAPDADAALLEGVLNGPLAAPAPAQDGTADQRSWGQRAYDALIMVINRGMSNPGSPPSSGRASVMITIKADPTTGKPVGAGVTALGQILDPEQVGRFACTGDVTPIALGDYGEPLYLGRTVRLATPGQFKALLVRDGGCTFAGCTVPGTYCDAHHLAWWSREGGTDILNLVLLCPRHHTLVHDKDLTATIRGSNVTWHL
>NZ_CP041616.1|WP_143784011.1|3072208_3073456_+|ArgE/DapE-family-deacylase
MPTTHDRPSLTPDEARVLELIDQDDLVALTKELVRAPGHNPPGEEAATAQVLLEACRSRGLRIEVTEVAPGRPNISAQLPGGAGPGLLLLGHTDVVPPGEGWSASPWEAGLREGRLYGRGTADMKGGLAACVIALDALRRAGVELSGPVELAALVDEEETGLGIRHYMAQLDAGPRPPFLGCVVAEPTDLQTIIAARGDCYVEITVHGLAAHSGRPDDGRNAIYGAARIVEDLRRWHDELKEHAHPLVGPPTWSVGLLSGGQGTSTVPAQALISADRRLLPGEDAEQVLADVRTRIGSLGLADDGLTVEMSMPMSMPGFETAAAHQFVTVTEQALQESGGPDLGLAGWTAACDGGFIARDGGVPTLVLGPGSVNDQAHRPDESVAVDDLVVAARVYALTALRLLGESPHADGPRD
>NZ_CP041616.1|WP_143784010.1|3070982_3072200_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MTTQPQTLPLAERASGLVGSVIDSSTSLLASQTHDIVRFAMGSPAAEAVPTQILSEIGAQALGPDAADAFDYAATEGDPALREALLSMLEGTSDATTSDRLTITSGGMQGLDLACKLFVDPGDLVVVESPTYTNGSATALSYQAELLEVPVDHAGLDVDSLESQVEAAGRTPKAIYTVPTFQNPSGASMSLERRHRLLDLARRWGSVVIDDDPYGMLRFAGEPLPTLRELGGGDPLVFSVRTFSKIVAPGLRVGWVDAAPELGQLLINAKQAMDTCTNLPAQRLVAGFLAGGHLEEHLVTQRAEYLRRKVAMQESLTEHFGDIARWTDPEGGFFLWVSFEQPVLTEALFPVALAEGVAYIPGNAFSPSQAFPHDLRLCFASTPPDRIREGVARLRRAVDQLAAQA
>NZ_CP041616.1|WP_143784009.1|3069722_3070946_+|M24-family-metallopeptidase
MTAPITGLRVSPEISRPFSPREFAARLRRVQAEMTTRELSALVVTDPANMYYLTGYNAWSFYTPQCLVVPVEGGPHLFARAMDAQGAHYTADLGPHQIHGYPEELVHRPDTHPMVWVTKTAVGLGLLPTGPGSRVAAELDAHFFSPRGYLSLQEGLAGAELVDSAELINWVRLVKSPAEQHMLRTAGRIAEHAMRTAIGAIEPGRRQCDIVADIQRAQTSGLNGLGGDYPAIVPMLPTGATAGTPHLTWSDRVMHSGEAATIELAGVHQRYHAPLARTLSLGPPPKHLVDCADAVSEGRDALLEELRPGRTAHEVHAAFTREIAKHGLTKESRIGYSIGIGYPPDWGERTVSLRHGSETVLEVGMAFHVILGMWMGTWGYETSEPLLVTATGPQRLTNVPGGLTIKT
>NZ_CP041616.1|WP_165700123.1|3068901_3069726_+|Asp/Glu-racemase
MSTTGMVGIGVIAPYDFALDRELWRWVPDSVTLHLTRTPYAPLPVSLEQACVIGDPEVVSRCTADLMAIQPDAFAYACTSGSFIRGTTGEQALVAAMEAAGATQAVTTSGALVQAMQHLGVARVALATPYDATISLGLRTFLEAAGVTVTGSRHLGLEGRIWTVPYAVTVDIVRRTFTPDCDAVFISCTNLPTFDIITELEAELGVPVLTANQVTMWAALRAVGIDAVGAGQRLLTHGPLFAPEARDAAASRSPLGHDASPATAEDRTTHGAPA
>NZ_CP041616.1|WP_143784008.1|3067852_3068845_-|D-2-hydroxyacid-dehydrogenase
MGRVSRSRPVIVVLGESADDRPPFLDALEGRADLRFTDAAGLGEAVQGAQALFLWDFFSTALSQVWEHCDGVEWIHVAAAGVDSLLFDELRDSEVTVTNARGTFDRPIAEFVLASVLAQAKLVHESYRLQQQHVWRHRETQGLAGSRALVIGTGAIGREIARLLRAVGMQVRGAGRTAREGDPDFGTVVASADLASEVGWCDHLINAAPLTPATTGLIDAEVLAAMKATAHLVNIGRGASVVEADLAAALAGGQIAGASLDVFEVEPLPADSPLWEAPGCVISAHMSGDVVGWRDTLARQFLANAERWLADEPLENVVDKQLGYVPGGAP
>NZ_CP041616.1|WP_143785152.1|3066422_3067838_-|amidase
MPQGRDLSLCSAEELASGFRVGEFTPEDAARAALAAIAVHNDTVNAMVLVDEDGALTAARESTQRWARGTPLSPTDGVPMTIKDLFLTSGWPTLRGSTLTDQDGPWETDAPSVARLREAGAVLLGKNTTPEFGWKGVTDSIRQGATGNPWGAGLTSGGSSGGAATAVGLGMGTWSIGTDGGGSVRIPASFTGTVALKPTFGRIPLFPPSPYGTLSHAGPMTRTVRDAALLLDIIAQPDPRDWAALDRPASSYLEGIEDGVEGLRIAYSPTLSYGTNDPEVEEAVTAAARVFAELGAHVEQVDPDITDCVDAFHTLWFTGAAKVVEHYGEGALDRIDPRLRQAVIELGTDVSASDYLDASAIRMDLGVRMGAFHQQHDLLLTPTMPIASFPVGQDAPDGWPSTLWTSWTPYTYPFNMTQQPALSVPCGFTSDARPVGLQLVGPRHAEALTLRAGRAYERATDWHLARPTLLS
>NZ_CP041616.1|WP_143784007.1|3065888_3066395_-|DUF3830-family-protein
MARFITITLEQRGVSCTARLLDEAAPRTASAVWDALPLSAPVFHGKYARNEIYGLYEPFAERDPGRENTTITPIPGDLCWFTFSGDDLGNPAYGYETEEEHRAATGIIDLAIFYGRNNLLINGDQGWVPGNVFGEITEGLAEMAAACQDVWMGGARGETLTFARSHED
>NZ_CP041616.1|WP_165700124.1|3076971_3078507_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MTHHEGAQVDPQNVQDAGAGSASALTDREAAVVAAVPKQLLTGGQWRDAEGGATFEVRDPSTGALLCEVADATPADGVAALDAAVAAQAEFAAMSPRDRADILTRAFELLHERIDDLALLMTLEMGKPLAEAKGEITYAAEFFRHFAGEATRISGGYQTAPAGGARFLIAKQPVGPCLLITPWNFPMAMGTRKIGPAIAAGCTSVIKPAQQTPLSMLALGQILLEAGLPAGVVNIVTCHNSGEVMEPLIRSGKARKLSFTGSTKVGKILLEQSADKVLRTSMELGGNAPFIVFEDADLEEAVAGALAAKMRNMGEACTAANRIYVHESIADAFGQRLAEQMGGMTVGRGTEEGVKVGPLIDQAAQDKVTELVADAVDRGAQVVTGGSAPEGEGYFFTPTVLTGVSPDARMGSEEIFGPVAAITPFSTEEEVVAAANDTPYGLVAYVFTNDLRRSLRVAETLETGMVGLNQGVVSNPAAPFGGVKESGLGREGGDTGIEEFLETKYIGVALA
>NZ_CP041616.1|WP_143784014.1|3078644_3079904_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MAELSPVLKQATPVVATRGEGVYLFDADDRRYLDFTAGIGVTSTGHCHPKVVAAAQEQVGKLIHGQYTTVMHEPLLKLVDRLGEVLPEGLDRMFFANSGSEAIEAALRLARQATHRPNIVVFHGGFHGRTVAAASLTTSGTKFRSGFAPLMAGVQVSPFPDPGHFGWPQEETTEFALRQLDYTLQTLSSPEDTAAFLVEPVLGEGGYVPASTEFFAGLRERADKHGILLVVDEVQTGWGRTGKFWGGDHFDARADIVVTAKGLASGFPLSGIAASHALMEKAWPGSQGGTYGANAVACAAALATLDVIQEEGLVENSATRGKQLKSALEDVAAQHPQITDVRGLGLMIANEFRDESGTPDGKTAAAVQQEAAKRGLILLNNGAWGQCVRFIPALVVGEQDVVEAVGIWEESVAAVLSGA
>NZ_CP041616.1|WP_143784015.1|3079922_3081287_-|MFS-transporter
MSTPSATQKNVDPSVLRKAIGASAIGNAVEWFDYGIYAYGTTYIAMALFPEDSTNAVLFTLVGFALSFLIRPLGGIFWGPLGDKIGRKKVLALTIILMASATFCVGLIPSYSTIGLAAPILLYLLRIIQGFSTGGEYGGAATFMAEYAPDRRRGFYGSFLEFGTLAGFNGGALLMLGLITFLDESAMQSWGWRIPFLVAGPLGLVGMYLRSRIEDTPVFRELEERTEEAEVGAMTKLKEVLSDYLPQVLKLFGLVIALNVVNYTLLSYMPTYLRNTIDLGQEGALIVPIIGQLMMMVVLPFVGALSDRVGRKPMWAVSLVGLAVLAIPMFHLMGTGLTGAIVGFAVLGLLYTPQLATISATFPAMFPTQVRFAALALSYNVATSLFGGTAPLVNEALIENTGDQMWPAYYMIIACVIGLLALWKVVETKGVSIRGSEVPGTPEAFAEQEDLAKT
>NZ_CP041616.1|WP_143784016.1|3081432_3083481_-|penicillin-binding-protein-2
MSASRRPQVRVRVPRPQTSPPVARRRRSVRPLWALVAVALLLGTVLAGRLVDLQVVNHQQLAGQAAQVNTRVVTEPALRGRILTSDGTALVTNAPTTVVTIDPTTLLESDDEGRALIEDVAAELDLPVESLWGRTRLCGTQGAPPVPSCFSGSPYQPIPIAFDADPVAALAILERPERFPGIAVDTRPVRDYPQVSLNAAHVLGYLGRPTRQEVEAQEELSAEDLVGRAGLEASYDSVLRGTPGRSTLSVDPRGVVTGQLDHSDPVSGHDVVTHLDAEVQPAVERILANTVRRSRAGGWPAPSAAALVLDVRTGGVVASASYPTYDPQIWTTGVTQEEYDGLTGADSGNPLLNRTIGETFPPASTFKAISLPAALASGVDPEESYPCPGAVSIGGRRFTNYESTAHGSLTVQRIMEVSCDTVFYTWAYDEWREQGGLEQDSDLTDPWVLTSEQFGLGQTTGIDLPGEAAGVVPGREWKRAYWEATREESCARAESGYPEESDPDRREFLELLAQENCVDGWQYRPGDAANFSIGQGDVAVTPLQLAVVYAAIANGGTLWEPQVVDEIRTGSGELVEDVVPVPAGEVQLDPEALQIVRDGLAGVNTNGTGSPAFATFDLDRYPVAGKTGSAESFGQRATAWYASYGPTTEPEYAVVVVIEQGGIGGDIAAPAARQIWDLLAEQ
>NZ_CP041616.1|WP_143784017.1|3083530_3084019_-|rod-shape-determining-protein-MreD
MSTLPSVVVRALLLLVAVLVPTLYPTGMPGRPDLVLLVVAAAALLQGPVTGALVGLAGGWLVDLVPPGGEPLGASALSYALAGALMGAARRWAPWSPLVPWIAAVAGAALIQALRGLVSAAGVGVAHPVDLLWSVVATALFALLLLPVLIGVERFLLSRGWA
>NZ_CP041616.1|WP_143784018.1|3084015_3084891_-|rod-shape-determining-protein-MreC
MATTRRRLRRPDWARRGTVLLGMLVGLTVLVLLADLARPAVTEPVRRSAASVFAPIQAAMTGWTDDRLTEVTRERDELDARVKELEAQVSTHEQLSSLERSAAGWGGHQLLPARVVGFSSDSAPVGGRTVTIDVGEVDGVRQDQTVISSDGLVGRVVRTAPSSADVLLLGGSDVVVGVRFGADGALGSVDGRPVPGLPARAPGDLTLTALGDSHIAVGDQVTTLGSPDSIPYVAAIPLGTVTAVDPDSGQLGRTAVVRPLVDNDTLDLVAVVQLGGPGRQFGAPAPGEKGR
>NZ_CP041616.1|WP_143784019.1|3084899_3086054_-|MreB/Mrl-family-cell-shape-determining-protein
MPYETACARWLGFSQPRALGGGKSRHALRSVGWEEWLRRIGQVSIGRGLLGRDLALDLGSSNTLIHQQGKGVVLDEPTLVAVDAATGQLVAGGQGAVEMLGRTPASVITVRPMVDGVVTDADLTESMLTHFLQQLHISRLVRPRMVVCVPSSVTPVERRALEDTALHAGARRVYVLEEAMAAAIGAGLPVHDATASMVVDIGGGTTEVAVISLGGIVNARSLRVGGDEVDEAIVAGVRASHNLLLGERSAQDIKFTLGSAYPMAEEQEMRVRGRDLGTGLPKTVSLTSTQVRRMIEPAVLQIVDVIKAVLDICPPELSGDVLDNGVMLTGGGALLRGLDERLHRELGVKLLVADDPARAVIRGAGACVDDFAALERVLVTPRRG
>NZ_CP041616.1|WP_143784020.1|3086064_3086634_+|hypothetical-protein
MSELTPSPADVARTLADMMSAAWPTTGDESRQWLTRHGIDPDSATKRTSGRGVGHSWARARMDGWGTADAGWGTFRDEFVGVNWFLWRGSSSDEVMTAAHALADLLTQAQGIPTEAEESTEHGGTWLWLLADHVIIMYAYHGRPRPDGFPAGDACVQLHVDLRERAEAQEEHARAHPAERPAPLAQPDQ
>NZ_CP041616.1|WP_143784021.1|3086627_3087776_-|phosphofructokinase
MRIGILTGGGDVPGLNPCIKAVVNRVHEEGHEVVGVRRGWGGLLNTNPDDPGSVAANLITLDPGVVRKVDRSGGTFLHSSRTNPGKVKTADVPDFLAGSVSGDGPHDLTAHALKVIEHAGIDVLIPIGGDDTLSYGLRMHQEGVPTIAIPKTMDNDVNGTDYCIGFSTAVTRGVEFIHNLRTSTGSHERIAVVELFGRYSGETSLITAYLAGVDRALIPEVPFDIDRVCDLLMADKAKNPSNYSMVTISEGATLAGGEMMLSGEADAYGHRKLGGIGQLTGELIKERTGEGIIYQQVGYLMRSGSPDSLDLMVATNYAVMAADLALDGSTGRMVALRNGSYSSVPISVTGEGVKRVDVDELYDAPNYRPTVRHVRGKPMFLY
>NZ_CP041616.1|WP_143784022.1|3087968_3090035_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MTAPSPLTGPTAYTMTPEHRRVFIGLMLGMFVASISQTIVGPAMPRIVAELGGMEHYSWVATAAMLVSAIAVPIVGKLSDMFGRREFYLGGLVIFMVGSVISGLAPNFWTLVAGRAVQGLGMGTLMPLSQTIIGDIIPARQRGKYQGLMGAVFGVTSVAGPLAGGFITDAWGWRWLFFAALPVGIVGVFIIARFLKLEHTGTPGKIDVLGIMTLTPALVAILLATSWAGSTYSWDSPVILGLFAVGTVLLALFVLVEARAQNPLLPLGMFRNGIVTYSSIAAFGMAMVMFGAIIYVPVFAQGVLGVNATESGLILMPMMLGLIVVGIVAGFLITRTGRYKEIMLLGVVVIALGLWMLTRLGVDSSEWELTAAIAVMGTGLGLAMQQYTLVVQNAVPRSALGVGTAALQFFRNVGNTVGIAIFGSVMTAGLAGAIASHLPADFADEAGDLEGIDAGAALDPAAMAGLPPEVLAAIRAGLSDQLHDVFLLGLPIMVVVFLATLGIRAIPLRETVHTPDEAQREYLDTMAHSAPSENYVPSLRHGDVGARTRERVLGIELALLARLAGQDDRPFLTRAVAELGEGDLERGRTLLRQASLMLTSADDQEVAQAERYAVALGQRAGAAGGLLSEQLRQDLAVRAAERSRAEVLSSIETSVAERHTAVDLSQVRQAASELATALLVDLAPEPED

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Crispr_ID: NZ_CP041616_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_9

3770957-3771064

Orphan

Consensus_repeat	Method
GCCGGGGGCTCCGGGGCGGGAGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_9

>merge|NZ_CP041616|9|3770957-3771064|CRISPRCasFinder
GCCGGGGGCTCCGGGGCGGGAGGCGGCTCCGGGGCAGGTGGCGGAGTCGGCGTCGGGGTCGGCGTGGGAGTGGGCGTTGGGGCCGGGGGCTCCGGGGCCGGAGGCGGC

>NZ_CP041616|9|9|3770957-3771064|CRISPRCasFinder
GCCGGGGGCTCCGGGGCGGGAGGCGGC	TCCGGGGCAGGTGGCGGAGTCGGCGTCGGGGTCGGCGTGGGAGTGGGCGTTGGG
GCCGGGGGCTCCGGGGCCGGAGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143784615.1\|3772475_3774074_+\|DUF3352-domain-containing-protein	unknown	unknown	gnl\|CDD\|371750
NZ_CP041616.1\|WP_143784621.1\|3783068_3783974_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270704
NZ_CP041616.1\|WP_165700165.1\|3760431_3760950_-\|DUF3180-family-protein	unknown	unknown	gnl\|CDD\|378650
NZ_CP041616.1\|WP_143784622.1\|3784192_3786214_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041616.1\|WP_143784616.1\|3774617_3776312_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|312032
NZ_CP041616.1\|WP_143784613.1\|3769914_3770442_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|376376
NZ_CP041616.1\|WP_143784608.1\|3762703_3763297_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP041616.1\|WP_143784620.1\|3780105_3782925_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_CP041616.1\|WP_143785217.1\|3763274_3765266_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP041616.1\|WP_143784612.1\|3768376_3769816_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334815
NZ_CP041616.1\|WP_143784611.1\|3767138_3768278_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|274833
NZ_CP041616.1\|WP_143784623.1\|3786213_3787944_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041616.1\|WP_143784617.1\|3776308_3777466_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236134
NZ_CP041616.1\|WP_143784619.1\|3778949_3780152_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NZ_CP041616.1\|WP_143785218.1\|3778262_3778751_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041616.1\|WP_143784618.1\|3777462_3778149_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_CP041616.1\|WP_143785216.1\|3761828_3762644_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NZ_CP041616.1\|WP_143784607.1\|3760942_3761836_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
NZ_CP041616.1\|WP_165700223.1\|3765467_3766004_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP041616.1\|WP_143784610.1\|3766132_3767131_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143784615.1\|3772475_3774074_+\|DUF3352-domain-containing-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	1.53016e-07
NZ_CP041616.1\|WP_143784621.1\|3783068_3783974_-\|phosphotransferase	gnl\|CDD\|270704	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase. This subfamily is composed of uncharacterized bacterial proteins with similarity to APH and ChoK. Other APH/ChoK-like proteins include ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). These proteins catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.06972e-87
NZ_CP041616.1\|WP_165700165.1\|3760431_3760950_-\|DUF3180-family-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.54169e-20
NZ_CP041616.1\|WP_143784622.1\|3784192_3786214_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP041616.1\|WP_143784616.1\|3774617_3776312_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	4.23265e-27
NZ_CP041616.1\|WP_143784613.1\|3769914_3770442_+\|inorganic-diphosphatase	gnl\|CDD\|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	2.54253e-82
NZ_CP041616.1\|WP_143784608.1\|3762703_3763297_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	3.07548e-115
NZ_CP041616.1\|WP_143784620.1\|3780105_3782925_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_CP041616.1\|WP_143785217.1\|3763274_3765266_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP041616.1\|WP_143784612.1\|3768376_3769816_-\|hypothetical-protein	gnl\|CDD\|334815	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family.	9.68624e-43
NZ_CP041616.1\|WP_143784611.1\|3767138_3768278_-\|zinc-dependent-metalloprotease	gnl\|CDD\|274833	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated. A phylogenetic tree of the DUF2342 family (TIGR03624) consists of two major branches. One of these branches, modeled here, is observed almost entirely to be found in coenzyme F420 biosynthesizing species of the Actinobacterial, Chloroflexi and Archaeal lineages. The few organisms having genes within this family and lacking F420 biosynthesis may either have an undiscovered F420 transporter, or may represent F420-to-FMN revertants. This family includes a Chloroflexus Aurantiacus protein whose crystal structure has been determined (PDB:3CMN_A). This has been annotated as a putative hydrolase, but the support for that assertion is untraceable. There is no cofactor present in the structure.	1.84347e-135
NZ_CP041616.1\|WP_143784623.1\|3786213_3787944_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.8199e-161
NZ_CP041616.1\|WP_143784617.1\|3776308_3777466_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	6.82879e-151
NZ_CP041616.1\|WP_143784619.1\|3778949_3780152_+\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	1.53894e-130
NZ_CP041616.1\|WP_143785218.1\|3778262_3778751_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.31931e-38
NZ_CP041616.1\|WP_143784618.1\|3777462_3778149_-\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	4.84257e-81
NZ_CP041616.1\|WP_143785216.1\|3761828_3762644_-\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	4.96888e-109
NZ_CP041616.1\|WP_143784607.1\|3760942_3761836_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	2.48866e-47
NZ_CP041616.1\|WP_165700223.1\|3765467_3766004_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	1.209e-87
NZ_CP041616.1\|WP_143784610.1\|3766132_3767131_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	2.65731e-64

>NZ_CP041616.1|WP_143784613.1|3769914_3770442_+|inorganic-diphosphatase
MHFDVTIEIPQGSRNKYEVDHATGRIRLDRMLFTATRYPADYGYIEDTLGEDSDPLDALVLLDEPTWPGCLVAARPIGMFHMRDEAGGDDKIICVPADDPRKSNIRELEHIGDHTRLEIQHFFEVYKDLEPGKSVEGAHWAGRAEAEQTYHEAVQRAKDAGLSTARWAGPGNQGH
>NZ_CP041616.1|WP_143784612.1|3768376_3769816_-|hypothetical-protein
MDRARRAAAALLSVSLVLPSAAAAYAGSTGDGAAGGSTQEGSVVAAQAAVRPTVAPSPEPVLRSVGAGLTVDPAVVSTEIEGELSNAWLGDSVGLTIRDVATGEHVLDRNSDSALTPASTTKLLAAAAIVSTLPMDQPFRTRVVTGPEPDQIVLTAGGDMMLAGGRGDPDLVEGHAGLGDLAEQTAASLGAEGLGTADHPVRLRLDTSYGEGPNAPAGWTDFWLSEGYAGPITMLGMQQHRAIPYDPSPRDPAQAAAIRFRAELTDRGVVVGGGPATEVPRLVAPPDATVLAEVESAPARDVLAEAMASSDNGMVEQLARQAAIADGAQADPAAVRDWVLQQVADYGIDTTGVKLADVSGLSDGSSIPVRVLADLLILGADGSHPELQEVLGALPIAGYSGTLWDRFALDSQAPAVGVARAKTGSLPGVTSLAGLVVTRDDRLLAYAAIADGVGRDGTSGLEARSVLDSVVAELASCGC
>NZ_CP041616.1|WP_143784611.1|3767138_3768278_-|zinc-dependent-metalloprotease
MTDANHHQISPDSPTTDGPIGDRGEGRSARGADYVDWDFAASTGRRLAPAGPSVSRQEAATLVAELRGAAAAAVEPVAQTSGLRAPEGAPAPLVVDRAGWIAANAVSMKGMLAPVLDHVVASRSKEGRAPSPTAQRLGGRVTGAEVGGMLAWMSTKVLGQYDLAPESTPRLLLVAPNVLTVERDLDVDPSDFRLWVCLHEETHRVQFTAVPWLRGHILDTARELGTQLVPESDQLGQRVQEIVSALPGVVRGETDITQVLATPEQRERLAAVTAIMSLLEGHADVIMDDVGPSVIPSVATIRSRFQERRKGSGSVDRILRRLLGMDAKMAQYRDGAVFVRTVTDQVGRDGFNRVWESPETLPRAAEIADPAAWVARVHG
>NZ_CP041616.1|WP_143784610.1|3766132_3767131_-|tRNA-lysidine(34)-synthetase-TilS
MVGPDPHVAAARVAVRRTVQSLGLGGQFLLVGCSGGADSLALAAAAGFVVPRLGGTVGAVVVDHGLQPGSARVAEKAAAQCRQLGLAPVQVLTVTVTRAGEGPESAARDARYAALTEAARAHGAAAVLLGHTRDDQAEQVLLGLARGSGARSLAGMPVARPAGPGAVIQIVRPLLTVSRTQTEGACRALGLSTWTDPHNTDPGFARVRARALLPVLEGALGPGISAALARSADLLRDDADALDAAARTAYEQLGEPPWPVSRLVDLPVAVRRRVWRELALGAGSPSGALSAEHLRAVDDLVTGWRGQGPVDLPGGLRVHRRAGLVSLLDRTP
>NZ_CP041616.1|WP_165700223.1|3765467_3766004_-|hypoxanthine-phosphoribosyltransferase
MGADLEQVLFSEEQIQARLGELAADIWADYQDKNVLLVGVLKGAVVVMADLMRALPGTAEMDWMAVSSYGSGTKSSGVVRILKDLDTDITGRHVLIVEDIIDSGLTLSWIRSNLDSRHPASVEICTLLRKPEAAKVEIDVRYVGFDIPNAFVVGYGLDFAEKYRNLRVVGTLAPHVYS
>NZ_CP041616.1|WP_143785217.1|3763274_3765266_-|ATP-dependent-zinc-metalloprotease-FtsH
MWILMILGLGVLWYTLMMPSPYERIDTSEALELIRSDKVAEATLTPDRVDMVLKEGESFSNDEVEDATRVQAFYVPSRGDMLVQEFEEHQPSESFTDDPARANWLASLLMTVIPLLLILGLFLFLMTRMQGGGRGVMQFGKSKAKLASKDMPKVTFADVAGTDEAVEELHEIKEFLAEPRKFLEVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFKEAKENAPAIIFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDGHANVILIAATNRPDILDPALLRPGRFDRQIAVEAPDMLGRLHILQVHSKGKPMGADLDLMTVARRTPGFSGADLANVLNEAALLTARRNETVIEDHHLDEAIDRVMAGPQKKTRMMSAKEKKITAYHEGGHALVAAAMRNTDPVSKVTILPRGRALGYTMVLPTDDRYSTTRNELLDQLAYALGGRVAEEMVFHDPTTGASNDIEKATALARKMVTEFGMSERIGAVKLGAGSGEVFMGRDMGHGRDFSEDLAGVVDQEVRRIIESAHDEAWHALNDNRHILDRLVLELLEKETLNAPALAEIFADVHKRPERPIWLSSDHRSVHTSGPVMTEAERRALANGHHPHGDGREHPPSAVVEIPDGGYVDGGEY
>NZ_CP041616.1|WP_143784608.1|3762703_3763297_-|GTP-cyclohydrolase-I-FolE
MSTVASTEVDHGRIEAAVREILIAVGEDPDREGLRDTPARVARSYAEIFAGLHQDPESAMSVTFDVAHDEMVLVKDIAMYSTCEHHLVPFHGVAHVGYIPGADGRVTGLSKLARLVEVFARRPQVQERLTTQIAEALKEHLQPRGVIVVIEAEHLCMSMRGVRKPGATTITSAVRGQLTDPATRAEAMSLILADRGR
>NZ_CP041616.1|WP_143785216.1|3761828_3762644_-|dihydropteroate-synthase
MGVVNVTPDSFSDGGRWFEPRAAIEHGALLLEQGADLLDIGGESTRPGAARPSEREELDRVLEVVRALADQGAKVSVDTMRARVAAEALDAGACLINDVSGGLADPQMAPLVASAGVPFVAMHWRAHSAQMDLEARYADVLGEVVAELEQRVAGLLEAGVAAEAIILDPGFGFSKDAGHNWELLAGLGQVVALGHPVLVGTSRKRFLGRLDPTAGPDAEPSPPIERDAATAATSLLAAQAGAWAVRVHDVPSTRDALAVWEHVRAAGADHD
>NZ_CP041616.1|WP_143784607.1|3760942_3761836_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTDTHSARRSPDRITLTGVTAYGYHGVLASEKTDGQEFGVDLCLEVDLSRAGESDNLAHTVNYAEVAADVVTILQGPSQDLIEGVAAQIADAVLTRPLVEAVEVTLHKPHAPVGVPFTDVTVQVRRERDVPVVIALGANLGDDPADTLNRAAERLSGLPGLRDVVLSALFETDPVGGPEQPVYTNAVALARTSLAPWRLLAALHGIEHEFGRTREIRWGARSLDLDLIQVGVPGETSEVLSDDPELLLPHPRAHQRGFVLTPWHSVDPSAALRVGDAVSPVADLLPDVADQGVRPRG
>NZ_CP041616.1|WP_165700165.1|3760431_3760950_-|DUF3180-family-protein
MDDLTGVRVSAVALVAVASTAVCVLLLRGWQALGNGVPEVPWIAVAPLLLLIVLVLFSAWQVRRYARFRSQGSRGSAPQRVSPQRARGTLVAAQAAALGGGALVGWYLAIVLLRVPNTDVSSVRDQAVRAAVCAGVAVVLGLAGLVAQHWCRLPPGDSDDEDDEPPRGVSYI
>NZ_CP041616.1|WP_143784615.1|3772475_3774074_+|DUF3352-domain-containing-protein
MTAPPAGAFDPSQSASYTYEPPQQGSKSRPALLVALAVVAALVIGGGAFAVTRALGGGGDQPASALPADTAAYLRLDIDPKVGQKIAAVRFFDALDDDALETLRSEDIRKEFFDWMAEEEEAFASIDYAEDIEPWLGDRMGLGIVPNGSDEPFFGIALQVKDEDAANEGLTKLQEATNSTSDDGLDWYFHGDYAVLTTTDAVGSLQDLVEEGTLADKDTFTQDMAALGDEGVVSGWVDVEPLAALVDSPLAQETLDDASALDATGALGSMAGTSQLASEAATGRYAAAVRFSENNIEVHGVTRGLEATGIEGGDSAQLILDLPEDTVGAFGLEHGDQLVANAYAAFQEQFPQEVTEAEQSAAEAGFTLPDDIQTLVGSSLVLSAGPGLLELEDLDDMQLWEVAYRSETDTDAAQDLLTRAFGAAGTPEADDFLIQRTDDGALTLGVSQSYVDAVAEGGTLGDTDLFKSAVPNAGDADSVFYVNINSLEHLYLNEVEDAEAKNALEQLAAVGFSAAADNEGNGEFTLRFVADE
>NZ_CP041616.1|WP_143784616.1|3774617_3776312_-|alpha/beta-fold-hydrolase
MTINRVGTPQSRRGPSVRTNGSVRGRLSSLAVGGALLGLVAAGCTGAPSTERVEPGQQSSTGSDKGQGTGDTGEATGDAGQGTGGGTGPATGGAGAVPEGLEEFYGQDIAWESCDGGECATLTVPIDYDEPDGSTIELALLRVPAGDSSQGSLVLNPGGPGGSGVDYARSAGMVYSDTVREHYDIVGFDPRGVGQSAPITCFDDARMDEWIGFDPTPDDAAEEEAALQQGRDFAAACEENSGELLGHVSTVEVVRDMDVLRSALGQEQLDYFGASYGTVLGATYAELFPANVGRFVLDGAVDPTMVGIDSAVAQTEGFERATRAYVEDCVAQGDCPLGGDVDSAMQAIPDLLAQLDAEPIPLDSDPAGELTEGWAMYGIVVAMYDQAGWPILTQAIRSAQDGDGTMLMFLANLYFDRGTDGTHNSNSSQAFYAVQCLDSSNNDAPEVDDEEALRRYVEASPTWGRHFATMDKSTCEDWPVAIDGPPLTEYTAEGAAPIVVIGTTRDPATPYEQAVALADMLDSGVLVSFDGDGHTAYGRSNDCVDDAIDAFLTEGTVPEDGLSC
>NZ_CP041616.1|WP_143784617.1|3776308_3777466_-|DNA-polymerase-III-subunit-delta'
MSVFDELVGQAPLIEQLRTAVSTPGAMTHAWLFTGPPGSGRSKAARAFAAALQCEGPGAPGCGQCQACRTVLAGSHADLIVEATSETFIRVGRARELALAAGSRPGVGRWRVLIIEDADRLNDQAADALLKSLEEPPPRTVWMLCAPSLEDILVTVRSRCRHLRLRTPPVDDVAELLQHRDGIDPAMAHYAARAAQSHIGIARRLARNEDARTRRHQVTAIPLTLTTLGAALDAAENLHATAVEGSAGTAGAEADEARADLLRQLGADPSARTQPPAIRTHLKEFDERQKRLARRQQHDTIDAALTDLTTVYRDALVLKTGVAPINSTEVAALQEVARAFTPVQLLQALDTIGLARQRLIANGSPLLVLEAMMIALILPRAGQHG
>NZ_CP041616.1|WP_143784618.1|3777462_3778149_-|dTMP-kinase
MPQEPTSPTPEPSGLFVAFEGGDGAGKSTQSRLLGAALEAIGREVVLTREPGGTELGAQIRQVLLHGDHVAPRAEALLFAADRAHHVATVVRPALERRAVVLTDRYMDSSIAYQGVARALSHDDVRDISRWAVEDLLPELTVLLDVTAAEGRARRGGVHDRLEREDDAFHEAVRQGYRQLAERDPARYLVLDAGRDPMDLHRAVCRALAGRSPDLRMLVPVSHQDVVR
>NZ_CP041616.1|WP_143785218.1|3778262_3778751_-|AsnC-family-transcriptional-regulator
MVQSDGGVVLDRIDQHLVALLEKDGRTSNATLAREVGVAESTCLVRVRALREAGVIRGIHADIDPALVGRPVQAMIAVRFGGHRRSHFEQFRQEVPKLPGVLSAYHVSGATDYFVHVACESADALRDFVLDHLTNRPGVLHAETALIFDMLKGEATLSGLEA
>NZ_CP041616.1|WP_143784619.1|3778949_3780152_+|PLP-dependent-transferase
MSFDTVAVHAAREDLTALGVHVPPIDLSSTYPLPSIEAGGQAYDRMAEGHSREEGQTPVYQRLWSPGVARFEEALARLEGAEAGIGFASGMAALTATLLSCVAAGTPHVVAVRPLYGGSDHLLETGLLGTRVTWADPHEVAAAIQADTGLVIVETPANPTLELVDLRALVAQAGTVPVLVDNTFATPVLQRPLEQGASIVLHSVTKFLAGHGDVLGGIVATSEELASRIRPVRALTGATMHPLAAYLAHRGLQTLPVRVRAQQDTAQVVAHWLVNHTDVQHVHYPGLGGSDPAGLVGDQMSGPGAILAMDLGSFERARQVAERVSLIGHAVSLGGVDSLIQHPAALTHRVVTPEARPGAGILRLSVGLEAAEDLIADLEQALATAVSSTSEPHLRQLISS
>NZ_CP041616.1|WP_143784620.1|3780105_3782925_-|type-I-DNA-topoisomerase
MEGPVSGRKLVIVESPGKVKSIGEYLGPDYVVDASIGHIRDLPNPSELPVEMKKGPFGKFAINVEDDFDPYYVVDADKKKKVNELKRHLKNADELYLATDEDREGEAIAWHLLEVLQPKVPVKRMVFHEITREAIQRAVNETRDLNMDRVDAQETRRVLDRLYGYEVSPVLWRKVRQGLSAGRVQSVATRMVVERERERMAFRSASYWDVEGEFAPEGSGGQAFLARLTGVDGKRVATGRDFDDRGALKSSGLVHLEAALATSIAEGTREAQVVVRQVSEKPYTRRPSAPFTTSTLQQEASRKLRLNAQSTMRTAQRLYENGYITYMRTDSTTISESAVSAARAQARDLYGAEFVPDAPRRYGKKSKNAQEAHEAIRPAGDSFRTPAQVAGALRGQEYALYELIWKRTVASQMADAKGSTASVKLAATLPSGHDAREVEFSASGTVITFRGFLAAYEEGRDEDRHARPTEEQERRLPRLSEGVALDVLDTEAQGHRTSPPARYTEATLVKALEEKGIGRPSTYASTVGTIQDRGYVRTRGSALIPTWLAFAVTRLLEEHFERLVDYDFTASMEEGLDRIEAGDEQRVSWLKRFYFGDQATDAEGLQDLVADLGDIDARGVSTIDIGDGIVVRVGRYGPYVEDTNSTDDPPRRATISDEIAPDEMTPEKGRELLEAAADDGRVLGQDPATGRDIVARAGRYGPYVTEVLPEDPEPGAAATATPEGGPGSPATPAKKAPAKKATKKAAKVKPRTASLFEDMDLATIELDTALRLLSLPRVVGADPESGEDITAQNGRYGPYLKKGTDSRSLTTESQLFDITLEEALAIYAQPKQRGRAAAPPLKELGNDPVSGKPVVVKEGRFGPYVTDGETNATLRKDDDPATVTPERGFELLADKRAKGPTTRKRTAKKTTKKAAAKKTTAKKAATKKSAAGGAAQKSS
>NZ_CP041616.1|WP_143784621.1|3783068_3783974_-|phosphotransferase
MSSGPPAEVAIDLELVRTLLADQHPDLADRPLSPLGEGWDNAIFRLGQHYLVRLPRRQAAAGLVAHEHRWLPEVARLVDLPVPAPVRHGHPTAYFPWSWSITRWIEGRPAAESPVAARAHWAGVLARFAAQLHQPAPSDAPQSLVRGVPLALRDATLRERLSSVGHPRGDDLLAQWERALAAPVYDGPPRWVHGDPHPLNMVVRRGSLAAVIDFGDLTQGDPASDLATAWQTFSWEGRAAFVVRYSQLAGRDEALWQRARGWAVLYAVNSLALSADSPQFTAIAEHTVAQLLEAPDALLSR
>NZ_CP041616.1|WP_143784622.1|3784192_3786214_-|ATP-binding-cassette-domain-containing-protein
MSEGIKSEEEKAAESRRGPRAGHGSPGGGLGVPAEKAANFGDSAKRLIGLLRPDRAAVSLVVVLTAVAVVLNAIGPYILARATDIIFAGFFGRVLAEQGVPPGTPQEQVAEGLRASGEDTFADMIAVMDHLEVGRGVDFGALGEVLVLVMGIYLVASLLSWVQARLLVVVVNRTIYNLRRDVEDKLNRLPLPYFDRQPRGEVLSRVTNDIDNVSQSLQQTLSQLLNSLLTVVAMVVMMFVISPTLALVALITIPVSVVITGVIGSRAQKQFKRQWKHTGEVNAIVEETFTGHELIKVFGRQAESRRTFDKANNDLYEAGFGAQFISGIIMPTMMFVGNLNYVVIAVLGGLRVASGTMSLGEVQAFIQYSRQFTQPLTQVASMANLMQSGVASAERVFEVLDADEQDPESASPATLDDPHGRVTFEGVAFSYDPERPLIHDLDLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYELDGGRITLDGEDITDLTRKGLRSRIGMVLQDTWLFEGTIRENIAYGRPEATEAEIIEAAEATYVDRFVRTLPEGYDTVLNSEGSNVSAGEKQLITIARAFLSDPALLILDEATSSVDTRTELLLQHAMNALRSDRTSFVIAHRLSTIRDADLILVMEAGAIVEKGTHEDLLASDGAYARLYQSQFAGSAVDIDEELQTTT
>NZ_CP041616.1|WP_143784623.1|3786213_3787944_-|ATP-binding-cassette-domain-containing-protein
MLIRLLRAHLGPYRWLVVILLVLQLASTIASLYLPSLNGRIIDEGVAVGQTGPILRLGAIMLAVSLVQITVTIGATYLASRTSASVGRDVRGSVFDRVAVFSAQEVGRFGAPTLISRSTNDVTQVQTVTFMGLTLMVGVPIMMVGGIIMALREDVGLSWLMAVAVPLLALVVGLIIRRMVPQFSLMQKSVDWVNRVLREQITGIRVVRAFVREDDERARFAAANTQYTGTALAVGKLMALVFPLVMLIFNASTIAVMWFGAHRIDSGNMEIGALTAFLAYLIFVLMSVMMATFMATMIPRAEVSAGRIVEVLDTDSTVVEATNPVQIPHGPVEIEFRDVEFAYPGAEVPVLQGVSFTARPGQTTAIIGSTGAGKTTLVNLIPRLYDVSSGAVLMGGVDVRDAELSDVWRRVGLVPQKPYLFTGSVADNLRYGDPEASEEDLWEALRIAQGTDFVQAMPERLDSAIAQGGGNVSGGQRQRLAIARALVRRPDVYLFDDSFSALDLMTDRRLRAALEPETGEATVIVVAQRVSTIIGADQIVVLEDGRVVGVGTHDDLLADCTTYQEIVQSQAVAEVA

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Crispr_ID: NZ_CP041616_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041616_10

3949270-3949378

Orphan

Consensus_repeat	Method
GGGCTGCCCCACCGTGCTGATCGGAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041616_10

>merge|NZ_CP041616|10|3949270-3949378|CRISPRCasFinder
GGGCTGCCCCACCGTGCTGATCGGAGGACTGCCCGCGGCACGAATGGGAGACATGTCTGCGTGCGGCGCCCCCATCGTCATGGGCTGCCCCACGGTGCTGATCGGAGGA

>NZ_CP041616|10|10|3949270-3949378|CRISPRCasFinder
GGGCTGCCCCACCGTGCTGATCGGAGGA	CTGCCCGCGGCACGAATGGGAGACATGTCTGCGTGCGGCGCCCCCATCGTCAT
GGGCTGCCCCACGGTGCTGATCGGAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041616.1\|WP_143784742.1\|3944938_3945949_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP041616.1\|WP_143784745.1\|3947197_3949012_+\|VgrG-related-protein	unknown	unknown	gnl\|CDD\|226032
NZ_CP041616.1\|WP_143784741.1\|3941759_3942230_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143784751.1\|3951794_3952331_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274050
NZ_CP041616.1\|WP_143784743.1\|3945959_3946391_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NZ_CP041616.1\|WP_143784765.1\|3963524_3964928_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|379910
NZ_CP041616.1\|WP_143784753.1\|3955187_3957185_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NZ_CP041616.1\|WP_143784740.1\|3941316_3941760_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NZ_CP041616.1\|WP_143784757.1\|3958854_3959361_-\|SigE-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132028
NZ_CP041616.1\|WP_143784737.1\|3937383_3938112_+\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NZ_CP041616.1\|WP_143784738.1\|3938193_3939513_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143784752.1\|3952287_3955116_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225461
NZ_CP041616.1\|WP_143784755.1\|3957356_3958862_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143784739.1\|3939710_3941267_+\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028
NZ_CP041616.1\|WP_143784761.1\|3960615_3961266_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP041616.1\|WP_165700178.1\|3942226_3942385_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041616.1\|WP_143784763.1\|3961262_3963290_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP041616.1\|WP_143784749.1\|3949845_3951795_+\|putative-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|274051
NZ_CP041616.1\|WP_143784759.1\|3959448_3960567_-\|YbdK-family-carboxylate-amine-ligase	unknown	unknown	gnl\|CDD\|237408
NZ_CP041616.1\|WP_143784744.1\|3946393_3947194_+\|peptidase-M23	unknown	unknown	gnl\|CDD\|377754

Protein	Function_ID	Function_description	E-value
NZ_CP041616.1\|WP_143784742.1\|3944938_3945949_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	6.33009e-06
NZ_CP041616.1\|WP_143784745.1\|3947197_3949012_+\|VgrG-related-protein	gnl\|CDD\|226032	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown].	1.66067e-23
NZ_CP041616.1\|WP_143784751.1\|3951794_3952331_+\|phage-tail-protein	gnl\|CDD\|274050	TIGR02242, putative_secreted_protein, phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model. [Mobile and extrachromosomal element functions, Prophage functions].	2.68072e-14
NZ_CP041616.1\|WP_143784743.1\|3945959_3946391_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	1.56807e-31
NZ_CP041616.1\|WP_143784753.1\|3955187_3957185_-\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	5.37464e-13
NZ_CP041616.1\|WP_143784740.1\|3941316_3941760_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	3.66819e-36
NZ_CP041616.1\|WP_143784757.1\|3958854_3959361_-\|SigE-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	2.25087e-44
NZ_CP041616.1\|WP_143784737.1\|3937383_3938112_+\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	2.26314e-33
NZ_CP041616.1\|WP_143784761.1\|3960615_3961266_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.66081e-70
NZ_CP041616.1\|WP_143784752.1\|3952287_3955116_-\|hypothetical-protein	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	1.02303e-41
NZ_CP041616.1\|WP_143784759.1\|3959448_3960567_-\|YbdK-family-carboxylate-amine-ligase	gnl\|CDD\|237408	PRK13517, PRK13517, glutamate--cysteine ligase.	3.13764e-133
NZ_CP041616.1\|WP_143784739.1\|3939710_3941267_+\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	1.90215e-57
NZ_CP041616.1\|WP_143784765.1\|3963524_3964928_+\|sodium:proton-antiporter	gnl\|CDD\|379910	pfam16980, CitMHS_2, Putative citrate transport. CitMHS is a family of putative citrate transporters, belonging to the Na+/H+ antiporter NhaD-like permease superfamily.	6.59408e-155
NZ_CP041616.1\|WP_143784763.1\|3961262_3963290_-\|hypothetical-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.31765e-19
NZ_CP041616.1\|WP_143784749.1\|3949845_3951795_+\|putative-baseplate-assembly-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	3.49817e-134
NZ_CP041616.1\|WP_143784744.1\|3946393_3947194_+\|peptidase-M23	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	1.33569e-05

>NZ_CP041616.1|WP_143784745.1|3947197_3949012_+|VgrG-related-protein
MPISSTCQVHVDGSPLPADIAGLLTDACVDDSQRLPDMFTLRFRDIGRTVIAKSGAVIGATVKISVQTAAASSPVPLMVGEVTAIEAEFDSAGTFTVIRGYDPAHRLFHGRRTQAFTQVTATDVITKVVQSAGLRTGSLATTKTVYEQVSQAGQTDWEFLESLAREEGMDLWVREGKVNFAAPERASAAPAAGGRGTRVPLAIRLGTELVRLRAVISSAQQVKEVEVRGWDVSTKKELKSVAPAETDTVKLPDVNAKKLAATFGNKTYVSTEVPFGAQAEVDGAAKSLAREVAGSFASVEGVVHGNPDLCANSAITLDGLGGPFDGKYTVTSTRHRFDPAHGYLTTFTVSGRNDRTMLGLAASGSSTAGPVGPVVAVVTDVNDPDKLGRVKVKMPWLDDDYVSPWARTVHPGAGKDRGWVVLPEVGDEVLVDFEQGSVRRPYVLGGLHNGVDTPPSKGPALVDGAKGAVNRRTMVSRRGHRIDLLDEQGRADGVTVQTADDKLILNLDAVATTITLHSDGTVQIEGTKGIVVDAASANLDLKGGKITIAGQQGIEIKSTAGNVSVQSSAQLELKGITTKLEGSAMTEVKGGATCAISGGLVRIN
>NZ_CP041616.1|WP_143784744.1|3946393_3947194_+|peptidase-M23
MSSSMALVVTGSGKESPPTPLQDAQQGPAKDATRSQMERARLVIYELQPAPNETDAKVGPKLDEINFQFNPKEVSIQKQAKWERKPATGAKKAGPPQFTGAEPCKLTLEMFLDATAAHDTSVVTTVEKLFACCAPTEKSSDKEKPSPPLVALHWGKVTSFAAFVTSVSAKYSLFSSDGTPIRALCQVSLEEMPVLAWRQNPTSGGLAVRRAHQLVDGDTLASVAYAEYGDPALWRPLAAFNGIDDPLRLRRGTRLLLPTLDELGVG
>NZ_CP041616.1|WP_143784743.1|3945959_3946391_+|phage-tail-protein
MEEPDAGVTTCWAVEIGRLNLGSWISCDGLGIELVMEQREEGGNNGFVWQLPTRVKYSNIKLSRPICSETSAVVDWLTGVVRKAEPQTARIRALTAEGKAVAVWNLQGVIPVRWTGPSMSAESPKTATETVELAHHGFTVGKE
>NZ_CP041616.1|WP_143784742.1|3944938_3945949_+|hypothetical-protein
MADAPLSHAGLPVVTAPEATAPAPTTTDDGPQLTVSRAQGVNEPSASTGTDWVNEPSAPTGMAWVDVPLTGLVPPLAGPPTGTGSSSLSTPPLAPLPTPAGATHPATAGPTVSRLGTVATDRPPVRRGSLHIGAPVQTWTPAGSAQPLTTRSAPGPVPLQRIFSAPDQPASTPLTAFAGADTSTGPVRRLLAGPPVVASPLATSAVSGPAAGAHGIQTTETSTPLPVQRASASRPGPAGGDSVPGGDHPAGGFTELVIQRQSEGDAPVQESPAPPTGGTTESATGAPQAPSAPMVLPSGRDLDELAERLYEPLSARLRAELWLDRERSGLMVDLRR
>NZ_CP041616.1|WP_165700178.1|3942226_3942385_+|hypothetical-protein
MTYAPQRLYEEVAYVAYHFHWSREDILDLEHAERQRFVTEIGNLNRRINEGG
>NZ_CP041616.1|WP_143784741.1|3941759_3942230_+|hypothetical-protein
MRRSAVLPAPADERPAAGEDISESQESRRAQREEFRTEFSFVLPRGYVDGEGTVHRDGVMRLATARDELIPLTDDRVRENPAWLTVVLLGRVVTRIGGIENVHAEIIQELFAADLAFLQDLYRRINQEGHTRAAVTCPSCKESFEVDIAGGRLGES
>NZ_CP041616.1|WP_143784740.1|3941316_3941760_+|phage-tail-protein
MPLPENDAGVGYSFGLEVDGIQIKHITEISGLKMEQDVVELKQNDSKGNYVIKKIPGRWKAGELTVTRPLNADNSFKDWVKNAQLGKMGDVRKGGAVILYDYENAPVARYNFTNAWPKSLEMSTLKAGDTSVLTEKLVMTYEKLEAE
>NZ_CP041616.1|WP_143784739.1|3939710_3941267_+|phage-tail-sheath-family-protein
MPTYLSPGVYVEEVPSGSKPLEGVGTAVAAFVGLSAQGPFNEPTLVSNWTQFTSTFGGFIPGSYLATSVQGYFLNGGGNCYVVRIGQENGNGRGSSRSKEAPPELAPGPQAQLGRITIRALEADATDGSLTVEVADAGGESPSDDMFKLVVKRDGKVVEEYDRTTLKSGKANVATVVNAASKTITIEDAGSGSLARPETGATTLATPPPPAAVPASIDADDYVGDVAERTGFSGLESIDEITMLAVPDLMSAYQQGVIDLEAVQAVQLGMIAHCELMGDRMAILDPPPGLNAQQIKEWRVEAAGYDSPYATLYWPWIKSPDPITGQMTFMPPSGHLAGIWGRNDDTRGVHKAPANEVVRGAVSLETQITRNEHDLLNPVGINCIRAFPGQGIRVWGARTLSSDPEWRYVNIRRLFNYLEESILNGTNWAVFEPNDQALWAKLRRTISAFLVNEWRKGALFGSTPDEAFFVKCDEETNPAEGIDAGQVVCLVGVAPVKPAEFVIFRLSQFSGGTSLVSE
>NZ_CP041616.1|WP_143784738.1|3938193_3939513_+|hypothetical-protein
MVQSRDPLLVPERERPPPRRPVTSNPATSEGQSALNAGSLTRLQRAAGNQATAQFLQRQESTLTFDTPEVVTGHVTTLGPSAAGGSVATRCANLAIQYERTINLARDNADTALQNFETYMAFPAEAEAEADLMGVATKFALKEGFKALWDYAITPIAAVPGVDKLADLMSTLVEECERADTAAGRIKVREWILEQRGHFQSSFDQTLRAVGDMGMNFERGYAAVLPEGEAASTGIAETGGRAGSRIAAGDRTLVGPGAEYLNRISKAVEDGIEHVPTWQAQLQDMIERWVRRSENTVESRGGGDVYMGGRIYLTVKLLRQDGGYTVTLPTTGHLASAEANRVGDALRRLLAETGQNVNDLAILKVLRVEVEDEVWGFNETYHTVLHYRDPGHIEHRGVNFGPRVTSEYLAKANRIIPEALQQFTLSAIDVRSLSSAVEA
>NZ_CP041616.1|WP_143784737.1|3937383_3938112_+|DUF4157-domain-containing-protein
MHDHNHDVDDSTLRPKSARIDEETQRPAAARAAAEGRTDVLSPADLLGLQRVAGNAGVSTALEEERSPVHDVINSAGRPLDEPVRADMESRLGHDFNDVRVHDDGAAHSSAASVNAHAYTVGSHVVFQRDAYDPSSAAGQQTLAHELTHVVQQRSGPVDGTSAGGGIAVSDPSDRFEREASATAERVMAGPAPTPSAVQRSADEAPLGIQREEGEEEEPLQAMSVQREEEPSPEEEVEAPGG
>NZ_CP041616.1|WP_143784749.1|3949845_3951795_+|putative-baseplate-assembly-protein
MALPAPDLDDRRFQQLVDDAKRLVQQRCPEWTDHNVSDPGVTLIEAFAQMVDQLIYRLNRVPDRNYVKFLEMIGVELRSASAARGAVTFWLSAPQPQPVLVRAGSEVATPRTDVQEALVFTTLRELSIVPCTFAHSAVRPTGEQPSDTTRSLDSEQGFTCFASSPQVGDELLVGLSDAVPSCAVLLRLDCTVAGMGVDPRRPPLAWEAWDGTDWVPCQVDSDGTGGLNRPGDIVLHVPDGHQASVIARHRAGWLRCRLLEAEPDQPTYTASPRIMAVEASTVGGTTGYVHAEIVGREEVGRSDGTPGQRMLLSRRPVVASEATLRLEVVTDTGTQEWEQVAHFAASGPEDRHFRLDAYAGEVQFGPGVRQPDGGLRYYGAVPPRSATVRVHGYRCGGGRRGNIATGQIRVLKSSVPYVARVENRSAAVGGADPETLEDAKVRGPMLLRSRGRAVTAEDFEELAREVAPDVARAQCVTILTPEEAGGVRLLVVPHVPSDPVGRIERAELDPPESLLQRISTSLEARRLIGTRIMVTPPDYVWVTAVVSVSARPQHDPQEVRTAVLRALYHHFHPLTGGPDGTGWPLGRHVQSHELHATLAHVEGVDMAEEISVSLFPAEAGTGRREKAVQRVDLGPTSLVYSFEHQVRVR
>NZ_CP041616.1|WP_143784751.1|3951794_3952331_+|phage-tail-protein
MRGTVEGLTTPHPLAELLPGLYSQDTLAQALCSSLDEVLAPVIGTLDNLPAYLDLATTPDDLVPWLSRWVGMPVQAPMPVERLRDLLQSAVDLQGWIGTTRGVQLSLEALFGATTVVEESGGSDWSLDPHAPLPGDRVPSVTVRVSEGTGTPLDADRVETVVAAVTPAHVLCRVELVT
>NZ_CP041616.1|WP_143784752.1|3952287_3955116_-|hypothetical-protein
MPFRTQRPTPVGLARGRLEDVLLGPDAPVTGLVVAPPGAGKTTLLGRVAAATPAAAWYTAGGEDREETALVGYLSRALLGHRADCPPEEGIDGLLTALGDGPGPGCPLLVIDDLHEIAGTGAEAALERFLLLRPASVRILLGTRRPPSFNTSRMLASGALVELSGDDLRFRSWEVEDLFRTIYREPLSPETAALLCRRVGGLAAALQLFHLSVRGQTHLEREAEVVRLNGRSRLIRSYLTRTVLDGLTAERRQFLVRTAPLGVLDGPLCDELLGRTGSAEVLRDLTTQQLFTTTPDEGLTYRYHQVLRDHLEVALEDEVPAGEVTALHARAAQLLERSGHHSEALRAYKRAGDWGAAARVVRERLGVADRDVGELAAGVLPPAEQNDPWLAVARTRRLLRQGSIEDALVALRLVEAAADDPDLAAYCAHERLLASAWLGQRMPPVDVIRTPLGAVRALTRAARAPQPPEGADAEWGLVSAVAHLFAGRVPEARDELDRCYPVLAVGTWPWLAAGILGALVEVGVPGQRERCCATLEDLSLTADVEGYPWLARVARGLQACLVLETAGESWRIDACRSAISACQRDGDAWGELVIRSITAVALARRGEYAEAHRHLDRAAESSAELGAPVLGLWVHALTVAVTAAEGAVAPTAMRSGPDRQGGLADVASVLATCRFVVHHTRGQQGAGADGPPAPSVRCLGGFRLDHGTEIDLSPLRPRARLLLMLLAMHHGADVHRERLIESLWPGARLDAGTHRLQVAVSSIRRLLEDRGVDPTALRRHGDAYRLELPGVTVDVQLAEAAVTALVRATRAGEVAEVGDRAVELIDLYRGDLLPEVGEAEWVVDERDRLRLSVAGALASAAAMCLEQDRADVGVWQAQRVVQLDPMRDTAWLLLARLQRALGDHTAAQATLAEHGRVREFLGGDAPPPPTSPVPRGTARARA
>NZ_CP041616.1|WP_143784753.1|3955187_3957185_-|hypothetical-protein
MATYSIEEIYQVALGAGFTPSQATSWTAIALAESGGRVDAVNSQGEDSRGLWQVNIDPTVRGNSWGDLADPRVNAQAAYEISRGGIDMRPWTTTHESNRGTAHDYRTYLDDVEATVGVQGDWSGVSGYDAPAPTGPAPEPTAPYVAGQAVQHTQQDATTAWMTGTRQTDTDGDGLVDALEVAAGSDPTVADTDGDGLSDAFEVGVLRSDPTSPDTDSDGLSDAMEHLYGTDPTRADTDADGLTDAAEVSYGTDPLQQDAGEGVHAPAPAPGPVTSTPPSLSPGVPPGGVPLPMSPAPPSTMGPAVTSVTYHPGAASAVPTPLAADPSGTAWATPTSAVDGFVDAAMDQFGDPYVFGTDAEGPDPTQFDCSKLTQWAAEQVGVDIPRTAQGQYLELKAHSATISVEEALHTKGALLFYFPYEPSGGPRPPGAHVAISLGDGRTVETTPGTGVAVMDAGTRFTHAGVVSELAEAVVPPTGPAPAPFTPQPVAPPGTGYDLIDAGLPPDQSRDSDGDGLTDAFEALAGTDPMNPDTDGDGLSDGYEAMVSKTDPLSADTDGDGISDTQELQDGTDPGSLQGVAGVVGRGEFAENVRDGFLDTDADGLSDAYETRTGLDPHSADTDGDGLSDAWELATGTNPLLIDSDGDGLADGFAQDAAVAEPDWSP
>NZ_CP041616.1|WP_143784755.1|3957356_3958862_-|hypothetical-protein
MSERHDDTTSHESLDLLDRAAEFAPHMSLEPSAVIAAGRRKVRRRRASAVGGGVAAVALAGGLWVAGPLSPFTDPDAVAPASVSWQDGVDVRVLDNEPHPSEVGRVHWQGDLVSAEGDTRPALVLTKDGEQLDPIPAEDGPGDVMIYRSGNLAVAVWESPVGSSGEQLLWSPGSEWGQGGDFIVDGVELWYASAEFIPGAEPGLEEMYWFGEDAAHAASGAPVSSTVLTAGDTRAVVMVDEARGLWGTDARPTDQLVGNVHVATLRSGAGYTGWMPGTEVSPRAGDPAPAPRDVVPTSVGVLPPGASLSATTSATVELAQGTVGKHTVVLAADPERTLAISPPQISYTLGGKQHNLQSWVETGARTIEVDGAQVQVSGTPDGLQLFVGPGEFALIPDRDLDGDSAVVGGIGDGQVVLVPGWEPTDDVTGLRLQLGGDAQQWVEPDATLVGTLFDGSPLLVLALDEGTLPAGETIQAVGVAENGTAVTLDRADEVLEVDLGL
>NZ_CP041616.1|WP_143784757.1|3958854_3959361_-|SigE-family-RNA-polymerase-sigma-factor
MNRKHEAEFVDFVNGASPRLLTSAWMLSGDPHVAEELVQEALARVYVSWRRARLDNPVGYARRVLVNLNTDRWRKGRREVLTGDVPERRSGALPGPGDRVDLGLDLIRALETLPRRERECVVLRHYFDVSEKEAAATLGVSVGTVKSSTSRGLAALRVALNEGEPTHV
>NZ_CP041616.1|WP_143784759.1|3959448_3960567_-|YbdK-family-carboxylate-amine-ligase
MRTVGVEEELLLVDIRDGRPRSVQGQVLLRAALDGPGVSAHGVAGAVEGEFQQEQLETQTPPVSDMSELEDQVRHWRGKASEAARRADCRIAALASSPLPVGTGPTPTAGERYAWIQQQYQRIARQQLSCGLHVHVAIDSAEEGVGVLDRIRGWLPVLLALSTNSPFAHGEDTGFHSWRSQMMGAWPSGGPTPLFGSLTAYRQLVREMTATGVLLDEGMLYFDARLSHHYPTVEIRTTDACSRLADTVLVAALARAMVETAAREWASGEPAPQTPTHLLTLATFQASRQGMTADLLDPLTSRPLAAWDVLESLLDRLRPALEASGDLTRVTAALDTIRTEGTGSERQRATFERTGQLVDVVAQAVRLTAEQE
>NZ_CP041616.1|WP_143784761.1|3960615_3961266_-|response-regulator
MIRIVLADDQALLRAGLRSVLAAQEDFTVVGEASDGAQAARTAQALDADLVLMDIQMPGVDGIEGVNRIVAAGLRAKVLMLTMFDLDEYVYGALRAGASGFLLKSAQPDEIVSAVREVHEGSLLFAPTVTQRLVEAYVRTPPQTEGVPPALADLTERELDVVSGIARGLSNAEIGAELFLGETTVKAHVSHILGKLGLRDRVQVVVLAYESGFAGR
>NZ_CP041616.1|WP_143784763.1|3961262_3963290_-|hypothetical-protein
MHRLPTRASWWMTAASFAWVWGLLSVAWPHRELVCVGLAAVFGVTTWIATRWPWPGVVLTSGALVVLGLLGIGTEDPAPLGPLFIVLVMVGYLVPPPWSVLAVPALGAATAIPARWDAQDIIFGGLLLLLPWWFGARVRARDARRQQAAADALRLANLDPEVQGRQAAAAERDEVAASAFEVIGRAVGQMRVSAAAARASLDAATITAIHRKGEEATQRLRALLVLLREEPSDGPDRPALPVPAEGPPATAADEQTWRQTLLNGWPALLVLVDVFATPFVMSALEGTVAPALPSAAFLVLVVAPLMVAVVLRDRFPEVVPWMAAAVLILGALVEPAELGRDGVWLMVVVIALAWSAGHTGTRLALAAWFAFTMTVGFLVFIDTPYYLPIYLAMGALPFGAGAVWSGHHAEEAAHLGLAQLRQQEIEAAERAAVSRERLGLARDLHDAASHAVGTMMMQANAAKVLRERDPQGARAALDAIVDIAREAGTELRDIRSAGDRAIYGTGPGHLPATTAGTSPAYGTAGEEERAHSRSTGDISEAIAPLVTAARRAGATVSTSLDLRTQPAPEDVVLLLRVVREGLANAARHAPGSDIVVEVSVIPARVLVVVSNGPPRPATRQDGAVTTSLGLGLGLRGLRELVGERRGEVSAGATDFGFELRASFPPHPAEQPVVPT
>NZ_CP041616.1|WP_143784765.1|3963524_3964928_+|sodium:proton-antiporter
MEVQWWSILPFVAMLLTIALAPLIPATAEAWEKQRVQLLVALVLGVPVALWFIVGGDTSAVVHAVIEYGQFIALLLALFIVSGGIFLKGDIEATPRNNTLFLAFGGLIASFIGTTGAAMLLIRPLLNTNHERKFRVHTVVFTIFIVANCGGLLTPLGDPPLFLGMLRGVPFTWTFGLFPMWLFVNLLLLVTYYALDRKFYAKEDPEALQIDKSTASALGVKGKLNFLYLGVIVGAVALAPSINIHTIEEGTAGFLDWIPLREIVMLGIAAVSYLTGDKVARFVDNKFTWGPILEVAAIFVGIFLTMIPALKYLSQLAPQLPLNEVTFFIFTGGLSAVLDNAPTYVTFFEMAGALGGDPTVADTGIYEPYLVAISLGAVFCGAITYIGNGPNFMVKAVADSAGVRMPTFGGYVVQAFIYLVPTLVAMVLIFIASGLWTTVAGVVLTAGLLTRAFLEARKHEHPVSADA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041616_1	1.1\|465792\|53\|NZ_CP041616\|CRISPRCasFinder	465792-465844	53	NZ_CP041616.1	3100035-3100087	1	0.981

1. spacer 1.1|465792|53|NZ_CP041616|CRISPRCasFinder matches to position: 3100035-3100087, mismatch: 1, identity: 0.981

gtcagcccggcgagcgatgcgaccggatgggcgccgtgagatgtccaggcaca	CRISPR spacer
gtcagcacggcgagcgatgcgaccggatgggcgccgtgagatgtccaggcaca	Protospacer
****** **********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041616_5	5.1\|1970642\|28\|NZ_CP041616\|CRISPRCasFinder	1970642-1970669	28	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1305998-1306025	6	0.786
NZ_CP041616_5	5.1\|1970642\|28\|NZ_CP041616\|CRISPRCasFinder	1970642-1970669	28	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	91553-91580	6	0.786
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	NZ_CP032688	Rhizobium sp. CCGE531 plasmid pRCCGE531a, complete sequence	68560-68587	7	0.75
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	NZ_CP032693	Rhizobium sp. CCGE532 plasmid pRCCGE532a, complete sequence	68560-68587	7	0.75
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	329140-329167	7	0.75
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	NZ_CP006987	Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence	183469-183496	7	0.75
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	NZ_CP013523	Rhizobium phaseoli strain R744 plasmid pRphaR744a, complete sequence	225872-225899	7	0.75
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	NC_020060	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence	157421-157448	7	0.75
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	NZ_CP017103	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872a, complete sequence	128439-128466	7	0.75
NZ_CP041616_4	4.1\|1511750\|28\|NZ_CP041616\|CRISPRCasFinder	1511750-1511777	28	CP006878	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence	156772-156799	7	0.75

1. spacer 5.1|1970642|28|NZ_CP041616|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.786

atggcggccgcgcatgggagagggtgcc	CRISPR spacer
aactcggccgcccatgcgagagggtgca	Protospacer
*   ******* **** **********

2. spacer 5.1|1970642|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 6, identity: 0.786

atggcggccgcgcatgggagagggtgcc	CRISPR spacer
aactcggccgcccatgcgagagggtgca	Protospacer
*   ******* **** **********

3. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP032688 (Rhizobium sp. CCGE531 plasmid pRCCGE531a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

4. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP032693 (Rhizobium sp. CCGE532 plasmid pRCCGE532a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

5. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

6. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP006987 (Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

7. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP013523 (Rhizobium phaseoli strain R744 plasmid pRphaR744a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

8. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NC_020060 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

9. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to NZ_CP017103 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

10. spacer 4.1|1511750|28|NZ_CP041616|CRISPRCasFinder matches to CP006878 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence) position: , mismatch: 7, identity: 0.75

catgaatccttcacacgatcgcgccttt	CRISPR spacer
aggtcagccttcacgcgatcgcgccttt	Protospacer
 .   * *******.*************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2111768 : 2138905

Gordonia_phage(33.33%)

integrase,transposase

attL 2108418:2108439|attR 2139073:2139094

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2108418:2108439	attL	NA	NA	NA	NA
WP_143783242.1\|2111768_2112958_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.6e-32	32.1
WP_143783243.1\|2113109_2114714_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_143783244.1\|2114701_2115301_-	hypothetical protein	A0A0F6SJ14	Sinorhizobium_phage	5.5e-12	29.0
WP_165700075.1\|2115297_2116062_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_143783246.1\|2116582_2116927_+	hypothetical protein	NA	NA	NA	NA
WP_143785052.1\|2117051_2117591_-	hypothetical protein	NA	NA	NA	NA
WP_143783247.1\|2117753_2118461_-	hypothetical protein	NA	NA	NA	NA
WP_143783248.1\|2118524_2119073_-	hypothetical protein	NA	NA	NA	NA
WP_143783249.1\|2119721_2120072_-	hypothetical protein	NA	NA	NA	NA
WP_143783250.1\|2120501_2121446_+	phosphotransferase	NA	NA	NA	NA
WP_165700076.1\|2122386_2126205_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_165700077.1\|2127317_2127761_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	3.0e-23	44.5
WP_143783253.1\|2127757_2128084_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	9.3e-22	56.3
WP_143783254.1\|2128104_2128566_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_143783255.1\|2128855_2130169_+	hypothetical protein	NA	NA	NA	NA
WP_143785053.1\|2131255_2132275_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.6e-27	30.3
WP_143783256.1\|2134589_2135129_+	hypothetical protein	NA	NA	NA	NA
WP_143783257.1\|2135632_2136403_-	hypothetical protein	NA	NA	NA	NA
WP_143783258.1\|2136828_2137242_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143783259.1\|2137735_2138905_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GJ95	Mycobacterium_phage	1.2e-55	37.5
2139073:2139094	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3890445 : 3946391

Mycobacterium_phage(20.0%)

protease,integrase,tail

attL 3880789:3880805|attR 3906731:3906747

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3880789:3880805	attL	NA	NA	NA	NA
WP_143784699.1\|3890445_3891399_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_165700172.1\|3891577_3892240_-	hypothetical protein	NA	NA	NA	NA
WP_165700173.1\|3892188_3892545_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_143784702.1\|3892611_3893208_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_143784703.1\|3893208_3893997_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_143784704.1\|3893993_3894611_-	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_143784705.1\|3894893_3895469_-	hypothetical protein	NA	NA	NA	NA
WP_143784142.1\|3895468_3895954_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_143784706.1\|3896701_3897496_-	hypothetical protein	NA	NA	NA	NA
WP_165700174.1\|3897693_3898158_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_143784708.1\|3898692_3898881_-	hypothetical protein	NA	NA	NA	NA
WP_143784709.1\|3899712_3900255_+	hypothetical protein	NA	NA	NA	NA
WP_143784710.1\|3900914_3902102_-\|integrase	tyrosine-type recombinase/integrase	S5M7Q6	Mycobacterium_phage	8.2e-68	38.2
WP_165700175.1\|3902599_3902917_+	hypothetical protein	NA	NA	NA	NA
WP_165700176.1\|3902913_3903447_+	RES domain-containing protein	NA	NA	NA	NA
WP_143784712.1\|3905672_3906548_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	6.8e-11	51.7
WP_143784713.1\|3906635_3907664_-	NAD(P)H-binding protein	NA	NA	NA	NA
3906731:3906747	attR	NA	NA	NA	NA
WP_143784714.1\|3907667_3908519_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_143784715.1\|3908439_3909234_-	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_143784716.1\|3909230_3909893_-	anti-sigma factor	NA	NA	NA	NA
WP_143784717.1\|3909889_3910435_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_143784718.1\|3910454_3911153_-	sortase	NA	NA	NA	NA
WP_143784719.1\|3911156_3911960_-	DUF4397 domain-containing protein	NA	NA	NA	NA
WP_165700177.1\|3912257_3913343_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_143784721.1\|3913342_3914218_+	squalene/phytoene synthase family protein	NA	NA	NA	NA
WP_143784722.1\|3914214_3915807_+	phytoene desaturase	NA	NA	NA	NA
WP_143784723.1\|3915806_3916145_+	lycopene cyclase domain-containing protein	NA	NA	NA	NA
WP_143784724.1\|3916141_3916453_+	lycopene cyclase domain-containing protein	NA	NA	NA	NA
WP_143785232.1\|3916518_3917385_+	prenyltransferase	NA	NA	NA	NA
WP_143784725.1\|3917374_3917944_+	hypothetical protein	NA	NA	NA	NA
WP_143784726.1\|3917840_3918710_+	glycosyltransferase	NA	NA	NA	NA
WP_143784727.1\|3918706_3919300_+	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_143784728.1\|3919532_3920159_+	response regulator transcription factor	NA	NA	NA	NA
WP_143784729.1\|3920155_3921634_-	hypothetical protein	NA	NA	NA	NA
WP_143784730.1\|3921649_3923479_-	hypothetical protein	NA	NA	NA	NA
WP_143784731.1\|3923883_3924981_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_143784732.1\|3925039_3926701_-	hypothetical protein	NA	NA	NA	NA
WP_143784733.1\|3926905_3927574_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_143785233.1\|3927597_3929640_+	AAA family ATPase	A0A2D2W2C3	Stenotrophomonas_phage	3.1e-06	40.5
WP_143784734.1\|3929639_3931634_+	Hsp70 family protein	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.7e-23	27.3
WP_143784735.1\|3931665_3936165_-	hypothetical protein	NA	NA	NA	NA
WP_143784736.1\|3936161_3937193_-	hypothetical protein	NA	NA	NA	NA
WP_143784737.1\|3937383_3938112_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_143784738.1\|3938193_3939513_+	hypothetical protein	NA	NA	NA	NA
WP_143784739.1\|3939710_3941267_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	2.8e-68	33.4
WP_143784740.1\|3941316_3941760_+\|tail	phage tail protein	NA	NA	NA	NA
WP_143784741.1\|3941759_3942230_+	hypothetical protein	NA	NA	NA	NA
WP_165700178.1\|3942226_3942385_+	hypothetical protein	NA	NA	NA	NA
WP_143784742.1\|3944938_3945949_+	hypothetical protein	NA	NA	NA	NA
WP_143784743.1\|3945959_3946391_+\|tail	phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041616

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection