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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041632 Geobacillus sp. E263 chromosome, complete genome 5 crisprs c2c4_V-U1,Cas14u_CAS-V,csa3,cas14k,Cas14b_CAS-V-F,cas3,DinG,DEDDh,RT,cas14j,cas6,cas2,cas1,cas4,cas5,cas7b,cas8b1 0 11 16 0

Results visualization

1. NZ_CP041632
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041632_1 357822-357912 Unclear NA
1 spacers
Cas14u_CAS-V

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041632_2 3098846-3100074 TypeV,TypeI-B NA
18 spacers
cas14k,cas6,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041632_3 3102328-3104076 TypeV,TypeI-B NA
26 spacers
cas14k,cas6,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041632_4 3114961-3115455 TypeI-B NA
7 spacers
cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041632_5 3116452-3117344 TypeI-B NA
13 spacers
cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041632_2 2.18|3100005|40|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT 3100005-3100044 40 NC_009329 Geobacillus thermodenitrificans NG80-2 plasmid pLW1071, complete sequence 42651-42690 0 1.0
NZ_CP041632_3 3.7|3102753|37|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT 3102753-3102789 37 NC_009552 Geobacillus virus E2, complete genome 27326-27362 0 1.0
NZ_CP041632_4 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115187-3115224 38 NC_009329 Geobacillus thermodenitrificans NG80-2 plasmid pLW1071, complete sequence 13218-13255 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NZ_CP025075 [Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence 5067-5101 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NZ_CP014336 Geobacillus thermoleovorans strain KCTC 3570 plasmid pLDW-1, complete sequence 13880-13914 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NZ_CP014336 Geobacillus thermoleovorans strain KCTC 3570 plasmid pLDW-1, complete sequence 46639-46673 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NZ_CP020031 Geobacillus thermodenitrificans strain T12 plasmid pGeo12a, complete sequence 48065-48099 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 CP008904 Geobacillus sp. LC300 plasmid pGt35, complete sequence 28928-28962 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NC_014916 Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence 13388-13422 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 CP011833 Geobacillus sp. 12AMOR1 plasmid pGARCT, complete sequence 23839-23873 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NC_022092 Geobacillus genomosp. 3 plasmid pBt40, complete sequence 23410-23444 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NC_013412 Geobacillus sp. Y412MC61, complete sequence 18253-18287 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NC_006509 Geobacillus kaustophilus HTA426 plasmid pHTA426, complete sequence 5764-5798 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 CP017693 Geobacillus lituanicus strain N-3 plasmid pLDW-3, complete sequence 30759-30793 0 1.0
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NC_010420 Geobacillus stearothermophilus plasmid pGS18, strain 18 4481-4515 1 0.971
NZ_CP041632_4 4.6|3115320|39|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115320-3115358 39 NC_009737 Bacillus virus 1, complete genome 25480-25518 1 0.974
NZ_CP041632_5 5.3|3116613|35|NZ_CP041632|CRT,PILER-CR,CRISPRCasFinder 3116613-3116647 35 NC_009552 Geobacillus virus E2, complete genome 28054-28088 1 0.971
NZ_CP041632_4 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115187-3115224 38 NZ_CP016918 Parageobacillus thermoglucosidasius strain TM242 plasmid pNCI002, complete sequence 21362-21399 2 0.947
NZ_CP041632_4 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115187-3115224 38 NZ_CP049704 Parageobacillus toebii NBRC 107807 strain DSM 14590 plasmid pDSM14590, complete sequence 12722-12759 2 0.947
NZ_CP041632_4 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115187-3115224 38 NZ_CP016624 Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI002, complete sequence 21362-21399 2 0.947
NZ_CP041632_4 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115187-3115224 38 NZ_CP017691 Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence 23130-23167 2 0.947
NZ_CP041632_4 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115187-3115224 38 NC_010420 Geobacillus stearothermophilus plasmid pGS18, strain 18 41189-41226 2 0.947
NZ_CP041632_5 5.8|3116949|39|NZ_CP041632|CRT,PILER-CR,CRISPRCasFinder 3116949-3116987 39 NC_048651 Aeribacillus phage AP45, complete genome 30319-30357 2 0.949
NZ_CP041632_3 3.13|3103150|39|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT 3103150-3103188 39 NC_048651 Aeribacillus phage AP45, complete genome 39101-39139 3 0.923
NZ_CP041632_3 3.11|3103019|35|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT 3103019-3103053 35 NC_019544 Deep-sea thermophilic phage D6E, complete genome 13999-14033 5 0.857
NZ_CP041632_4 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR 3115255-3115289 35 NZ_CP048424 Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence 167766-167800 7 0.8
NZ_CP041632_5 5.2|3116547|36|NZ_CP041632|CRT,PILER-CR,CRISPRCasFinder 3116547-3116582 36 MH622937 Myoviridae sp. isolate ctcg_2, complete genome 18395-18430 8 0.778
NZ_CP041632_5 5.1|3116482|35|NZ_CP041632|CRT 3116482-3116516 35 NZ_CP032703 Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence 535947-535981 11 0.686

1. spacer 2.18|3100005|40|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT matches to NC_009329 (Geobacillus thermodenitrificans NG80-2 plasmid pLW1071, complete sequence) position: , mismatch: 0, identity: 1.0

gcagcagactatgtgtttgggaactttgaagaagggaata	CRISPR spacer
gcagcagactatgtgtttgggaactttgaagaagggaata	Protospacer
****************************************

2. spacer 3.7|3102753|37|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 0, identity: 1.0

ggattgaaacggtgatcgttggacgcttcaccttctg	CRISPR spacer
ggattgaaacggtgatcgttggacgcttcaccttctg	Protospacer
*************************************

3. spacer 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_009329 (Geobacillus thermodenitrificans NG80-2 plasmid pLW1071, complete sequence) position: , mismatch: 0, identity: 1.0

gacatatatcgagatgaaaaagagatgggagaaagaag	CRISPR spacer
gacatatatcgagatgaaaaagagatgggagaaagaag	Protospacer
**************************************

4. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025075 ([Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

5. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014336 (Geobacillus thermoleovorans strain KCTC 3570 plasmid pLDW-1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

6. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014336 (Geobacillus thermoleovorans strain KCTC 3570 plasmid pLDW-1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

7. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020031 (Geobacillus thermodenitrificans strain T12 plasmid pGeo12a, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

8. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to CP008904 (Geobacillus sp. LC300 plasmid pGt35, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

9. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_014916 (Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

10. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to CP011833 (Geobacillus sp. 12AMOR1 plasmid pGARCT, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

11. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_022092 (Geobacillus genomosp. 3 plasmid pBt40, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

12. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_013412 (Geobacillus sp. Y412MC61, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

13. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_006509 (Geobacillus kaustophilus HTA426 plasmid pHTA426, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

14. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to CP017693 (Geobacillus lituanicus strain N-3 plasmid pLDW-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggcgacgccgagactcgagcagaagcggatatggt	Protospacer
***********************************

15. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_010420 (Geobacillus stearothermophilus plasmid pGS18, strain 18) position: , mismatch: 1, identity: 0.971

ggcgacgccgagactcgagcagaagcggatatggt	CRISPR spacer
ggtgacgccgagactcgagcagaagcggatatggt	Protospacer
**.********************************

16. spacer 4.6|3115320|39|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 1, identity: 0.974

cccaattcctttttacctacatattaccacatttatata	CRISPR spacer
cccaattcctttttacctacatgttaccacatttatata	Protospacer
**********************.****************

17. spacer 5.3|3116613|35|NZ_CP041632|CRT,PILER-CR,CRISPRCasFinder matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 1, identity: 0.971

gcacaggacgcggcacaaatcaaattgacgttcgg	CRISPR spacer
gcacaggacgcggcacaaatcaaattaacgttcgg	Protospacer
**************************.********

18. spacer 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016918 (Parageobacillus thermoglucosidasius strain TM242 plasmid pNCI002, complete sequence) position: , mismatch: 2, identity: 0.947

gacatatatcgagatgaaaaagagatgggagaaagaag	CRISPR spacer
gacatatagagagatgaaaaagagatgggagaaagaag	Protospacer
********  ****************************

19. spacer 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049704 (Parageobacillus toebii NBRC 107807 strain DSM 14590 plasmid pDSM14590, complete sequence) position: , mismatch: 2, identity: 0.947

gacatatatcgagatgaaaaagagatgggagaaagaag	CRISPR spacer
gacatatagagagatgaaaaagagatgggagaaagaag	Protospacer
********  ****************************

20. spacer 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016624 (Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI002, complete sequence) position: , mismatch: 2, identity: 0.947

gacatatatcgagatgaaaaagagatgggagaaagaag	CRISPR spacer
gacatatagagagatgaaaaagagatgggagaaagaag	Protospacer
********  ****************************

21. spacer 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017691 (Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence) position: , mismatch: 2, identity: 0.947

gacatatatcgagatgaaaaagagatgggagaaagaag	CRISPR spacer
gacatatagagagatgaaaaagagatgggagaaagaag	Protospacer
********  ****************************

22. spacer 4.4|3115187|38|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NC_010420 (Geobacillus stearothermophilus plasmid pGS18, strain 18) position: , mismatch: 2, identity: 0.947

gacatatatcgagatgaaaaagagatgggagaaagaag	CRISPR spacer
gacatatagagagatgaaaaagagatgggagaaagaag	Protospacer
********  ****************************

23. spacer 5.8|3116949|39|NZ_CP041632|CRT,PILER-CR,CRISPRCasFinder matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 2, identity: 0.949

catggatgaagcaatgcgtgaagcggcttatgcgttgcg	CRISPR spacer
catggatgaagcaatgagagaagcggcttatgcgttgcg	Protospacer
**************** * ********************

24. spacer 3.13|3103150|39|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 3, identity: 0.923

gtttctctatgcggcaaaacttctgttcctcttggcaaa	CRISPR spacer
gtttctctatgcggcaaaacttcggttcctctcggcaga	Protospacer
*********************** ********.****.*

25. spacer 3.11|3103019|35|NZ_CP041632|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 5, identity: 0.857

gattgaaagtccagaaccgtttgaagaagaaaata	CRISPR spacer
gattgaaagcccggaaccgtttgaagaagacggta	Protospacer
*********.**.***************** ..**

26. spacer 4.5|3115255|35|NZ_CP041632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ggcgacgccgagactcgagcagaagcggat-atggt	CRISPR spacer
gaagccgccgagacccgagcagaagccgatcacgg-	Protospacer
*. * *********.*********** *** *.** 

27. spacer 5.2|3116547|36|NZ_CP041632|CRT,PILER-CR,CRISPRCasFinder matches to MH622937 (Myoviridae sp. isolate ctcg_2, complete genome) position: , mismatch: 8, identity: 0.778

attctcgctcgttatttcttcaatctttttgccggt	CRISPR spacer
ttcttcatccgtcatttcttcaatctttttgacggt	Protospacer
 *..**...***.****************** ****

28. spacer 5.1|3116482|35|NZ_CP041632|CRT matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

tgtagctctttaaaactgtcaaaatcgtcaaccgt	CRISPR spacer
ttcctttcttcaaaactgtcaaaatcatcaaagac	Protospacer
* .  .****.***************.****  ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 163793 : 280411 95 Bacillus_phage(16.67%) transposase NA
DBSCAN-SWA_2 323029 : 370295 32 Bacillus_phage(25.0%) transposase,integrase attL 314655:314670|attR 346221:346236
DBSCAN-SWA_3 521937 : 528834 8 Cedratvirus(16.67%) integrase attL 521430:521444|attR 533556:533570
DBSCAN-SWA_4 544648 : 672572 124 Bacillus_phage(18.18%) holin,coat,integrase,protease,tRNA,transposase attL 561512:561526|attR 660568:660584
DBSCAN-SWA_5 844436 : 955120 98 Bacillus_phage(13.64%) coat,integrase,protease,tRNA,transposase attL 896640:896654|attR 936587:936601
DBSCAN-SWA_6 1168037 : 1177827 13 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 1237238 : 1248013 13 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_8 1266005 : 1342805 59 Bacillus_phage(15.38%) tRNA,transposase,coat,protease NA
DBSCAN-SWA_9 1484817 : 1537253 39 Bacillus_phage(36.36%) transposase,coat NA
DBSCAN-SWA_10 1620539 : 1669255 43 uncultured_virus(30.0%) transposase NA
DBSCAN-SWA_11 1692018 : 1761947 55 Streptococcus_phage(30.0%) transposase NA
DBSCAN-SWA_12 1939432 : 2018213 47 Virus_Rctr71(22.22%) transposase NA
DBSCAN-SWA_13 2467902 : 2525251 50 Bacillus_phage(28.57%) transposase,integrase attL 2493760:2493776|attR 2510922:2510938
DBSCAN-SWA_14 2564154 : 2586871 19 Anoxybacillus_phage(40.0%) transposase,terminase,integrase attL 2576573:2576588|attR 2581403:2581418
DBSCAN-SWA_15 3042879 : 3116451 52 Bacillus_phage(21.43%) bacteriocin,transposase NA
DBSCAN-SWA_16 3181760 : 3191563 9 Synechococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage