CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041661	Catenovulum sediminis strain WS1-A chromosome 2, complete sequence	0 crisprs	PD-DExK	0	0	1	0
NZ_CP041660	Catenovulum sediminis strain WS1-A chromosome 1, complete sequence	11 crisprs	WYL,cas3,csa3,DEDDh,DinG,RT	2	2	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

409475 : 441871

uncultured_virus(40.0%)

integrase,transposase

attL 414525:414540|attR 444506:444521

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143873502.1\|409475_411031_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.9e-12	27.4
WP_143873505.1\|411181_412042_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143873506.1\|412066_412726_-	dUTP diphosphatase	NA	NA	NA	NA
WP_143873508.1\|412852_413464_-	LysE family transporter	NA	NA	NA	NA
WP_143873509.1\|413470_414187_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_143873512.1\|414200_414866_-	hypothetical protein	NA	NA	NA	NA
414525:414540	attL	NA	NA	NA	NA
WP_143873513.1\|416646_417806_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.4e-50	40.3
WP_143873516.1\|417929_418763_+	hypothetical protein	NA	NA	NA	NA
WP_143873519.1\|418759_419353_+	hypothetical protein	NA	NA	NA	NA
WP_143873521.1\|419686_420040_+	hypothetical protein	NA	NA	NA	NA
WP_143869686.1\|420118_420427_+	hypothetical protein	NA	NA	NA	NA
WP_143869685.1\|420423_420789_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_143869684.1\|420824_422396_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.7e-41	28.9
WP_143873524.1\|422457_424023_+	hypothetical protein	NA	NA	NA	NA
WP_143873526.1\|424022_424691_+	hypothetical protein	NA	NA	NA	NA
WP_143873529.1\|424774_425734_+	hypothetical protein	NA	NA	NA	NA
WP_143873531.1\|425744_426014_+	hypothetical protein	NA	NA	NA	NA
WP_143873534.1\|426014_426452_+	hypothetical protein	NA	NA	NA	NA
WP_143873536.1\|426672_426999_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	1.0e-12	31.5
WP_143873539.1\|427602_428928_+	hypothetical protein	NA	NA	NA	NA
WP_143873540.1\|428933_429587_+	hypothetical protein	NA	NA	NA	NA
WP_143873543.1\|429670_430765_+	hypothetical protein	NA	NA	NA	NA
WP_143873545.1\|430827_431220_+	hypothetical protein	NA	NA	NA	NA
WP_143873546.1\|431281_431539_+	hypothetical protein	NA	NA	NA	NA
WP_143873549.1\|431620_431857_+	hypothetical protein	NA	NA	NA	NA
WP_143873551.1\|431844_432144_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_143869684.1\|432418_433990_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.7e-41	28.9
WP_143869685.1\|434025_434391_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_143869686.1\|434387_434696_-	hypothetical protein	NA	NA	NA	NA
WP_143873554.1\|434929_435238_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_143873557.1\|435637_437563_+	hypothetical protein	NA	NA	NA	NA
WP_143873559.1\|437579_438536_+	AAA family ATPase	NA	NA	NA	NA
WP_143873561.1\|439154_439952_+	hypothetical protein	NA	NA	NA	NA
WP_143873564.1\|440647_441871_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
444506:444521	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041660

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041660_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_1

602302-602401

Orphan

Consensus_repeat	Method
TTGTCGGGCTGAAGCCGCGACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_1

>merge|NZ_CP041660|1|602302-602401|CRISPRCasFinder
TTGTCGGGCTGAAGCCGCGACATTGTTTAGCTCGACATTTGTGCGTTCTGCTTTGACGGACTAAAGTCCGACCTACATTGTCGGGCTGAAGCCGCGACCT

>NZ_CP041660|1|1|602302-602401|CRISPRCasFinder
TTGTCGGGCTGAAGCCGCGACAT	TGTTTAGCTCGACATTTGTGCGTTCTGCTTTGACGGACTAAAGTCCGACCTACA
TTGTCGGGCTGAAGCCGCGACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143870048.1\|607723_608299_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP041660.1\|WP_143872836.1\|608336_608816_+\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|133150
NZ_CP041660.1\|WP_143870044.1\|604707_605028_+\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|225108
NZ_CP041660.1\|WP_143870034.1\|591242_592040_+\|DTW-domain-containing-protein	unknown	unknown	gnl\|CDD\|225690
NZ_CP041660.1\|WP_143870046.1\|605984_606452_-\|transcriptional-regulator-ArgR	unknown	unknown	gnl\|CDD\|179922
NZ_CP041660.1\|WP_143870047.1\|606890_607727_-\|beta-lactamase-regulator-AmpE	unknown	unknown	gnl\|CDD\|236811
NZ_CP041660.1\|WP_143870040.1\|597367_600286_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP041660.1\|WP_143870035.1\|592019_594047_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NZ_CP041660.1\|WP_143870050.1\|610224_611637_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP041660.1\|WP_143870043.1\|604343_604559_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738
NZ_CP041660.1\|WP_143870032.1\|589780_590473_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP041660.1\|WP_143870038.1\|595293_596265_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP041660.1\|WP_143870036.1\|594256_594961_+\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|377281
NZ_CP041660.1\|WP_143870037.1\|595008_595281_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870039.1\|596307_596772_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368692
NZ_CP041660.1\|WP_143870042.1\|602578_603967_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224787
NZ_CP041660.1\|WP_143870049.1\|609354_610218_+\|DNA-ligase	unknown	unknown	gnl\|CDD\|181662
NZ_CP041660.1\|WP_143870045.1\|605041_605968_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP041660.1\|WP_143870033.1\|590534_591137_-\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|371282
NZ_CP041660.1\|WP_143870041.1\|600757_601963_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143870048.1\|607723_608299_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	4.84493e-110
NZ_CP041660.1\|WP_143872836.1\|608336_608816_+\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|133150	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	4.52478e-31
NZ_CP041660.1\|WP_143870044.1\|604707_605028_+\|Hpt-domain-containing-protein	gnl\|CDD\|225108	COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms].	2.97815e-06
NZ_CP041660.1\|WP_143870034.1\|591242_592040_+\|DTW-domain-containing-protein	gnl\|CDD\|225690	COG3148, COG3148, Uncharacterized conserved protein [Function unknown].	4.89432e-62
NZ_CP041660.1\|WP_143870046.1\|605984_606452_-\|transcriptional-regulator-ArgR	gnl\|CDD\|179922	PRK05066, PRK05066, transcriptional regulator ArgR.	3.08218e-94
NZ_CP041660.1\|WP_143870047.1\|606890_607727_-\|beta-lactamase-regulator-AmpE	gnl\|CDD\|236811	PRK10987, PRK10987, beta-lactamase regulator AmpE.	6.65143e-74
NZ_CP041660.1\|WP_143870040.1\|597367_600286_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP041660.1\|WP_143870035.1\|592019_594047_-\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	1.35408e-93
NZ_CP041660.1\|WP_143870050.1\|610224_611637_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	2.95449e-98
NZ_CP041660.1\|WP_143870043.1\|604343_604559_-\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	8.23785e-17
NZ_CP041660.1\|WP_143870032.1\|589780_590473_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	5.06088e-118
NZ_CP041660.1\|WP_143870038.1\|595293_596265_+\|hypothetical-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	0.00287548
NZ_CP041660.1\|WP_143870036.1\|594256_594961_+\|DUF445-domain-containing-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	0.000366337
NZ_CP041660.1\|WP_143870039.1\|596307_596772_+\|hypothetical-protein	gnl\|CDD\|368692	pfam05981, CreA, CreA protein. This family consists of several bacterial CreA proteins, the function of which is unknown.	6.31421e-57
NZ_CP041660.1\|WP_143870042.1\|602578_603967_+\|AAA-family-ATPase	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	3.79235e-166
NZ_CP041660.1\|WP_143870049.1\|609354_610218_+\|DNA-ligase	gnl\|CDD\|181662	PRK09125, PRK09125, DNA ligase; Provisional.	1.75576e-147
NZ_CP041660.1\|WP_143870045.1\|605041_605968_+\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.82668e-84
NZ_CP041660.1\|WP_143870033.1\|590534_591137_-\|DUF2726-domain-containing-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	9.92019e-38
NZ_CP041660.1\|WP_143870041.1\|600757_601963_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.19067e-09

>NZ_CP041660.1|WP_143870041.1|600757_601963_-|IS4-family-transposase
MKLLLSNLLSENSIALDKRIKKALSDTVSCVQHGAKLSLTAIGRTLGEQSPSTTEKHCIKRVDRLLKNEKLQQNRTQFYKTLTAYLTGGIEDALPIIVDWSSVYDQSFVLLRASVAFDGRAFTIYEEVHAEGAMNNHKIHVKFLQNLKQILPDECCPVIVTDAGFKVPWFKAIDKLNWYWLARTRGTVKCKTDDNSEWTLVDAYHSQAKTKPTALKGLVLSKQHKWSCRGVLYKTSPPPKKHKKPTKRPNCNSYKKYSKGNSEPWFLVSNLPEDEFSALALVNIYKRRMTIEEAFRDTKNEYYGLGLRRSRSQSIERLQALLLIALLAQWQLYVIGKAAELQGYHRHFQANTEKRRRVLSYCYLAKRILLNSSFAITNSMLQEAFELLIMETRCHLNCGDP
>NZ_CP041660.1|WP_143870040.1|597367_600286_-|RNA-polymerase-associated-protein-RapA
MSDFALGQRWISDSESDLGLGTIVAINGRRISMLFPATGDQREYVAGSAPLTRVSFNPGDSVESAEGWTLNVHQVMAEDGLNIYIGERSDNGEKAQLLETRINHHIKFNKPQDRLFTAQIDRNDWYTLRYDARCMQHKYQTHPLVGLAGARTALIPHQLHIAKEAGSRVAPRILLSDEVGLGKTIEAGMIIHQQLLTGRASRVLILLPESLQYQWLVEMLRRFNLKFAIFDEERCGEYDESEENPFETEQLIIAPLTILSESDKRLEQACQASWDLVVVDEAHHLDWSEEAVSPQYSAVEKLAKICAGLLLLTATPDQLGHQSHFARLRLLDPERFYDYATFVKEEAGYKAVADLAKLLNSDEKIDADGLEKLKSLGEQEQGEGFEASVLSINDADKTVAQQARHKIIRSLIDRHGTGRVLFRNTRASVKGFPKRCVLPTELELPSEYRAAADWWLKRHPEDYSAKAVAPLLTPEFLYQNAISGDIEWWRIDPRIDWLAELIKENKQDKFLIICARASTALTLEQAVRVKFGLNAAVFHEGMTIVERDRAAAWFADQDEGCQLLICSEIGSEGRNFQFARQLVLFDIPLNPDLLEQRIGRLDRIGQRNDIQINIPYFADSAAETLFNWQHKGINAYAETCPAGVKVFEQQNDALLTALASNQFDETQIKPLIERAKAEIEQINLQLEEGRDILLELNSKGFDGERIAEDIEAMDDDTQLVAFMLQTFDVYGVSQDDKGEQCIAINPTEHMLEPHFPELGDEGMTISFDRETALSREDVRFISWDHPMVQGCFEMINAGEMGNNAVSILNNKALPEGTYLVELIFVVETSAPKQLQPGRFLPPTPVRILLDKAGNDLAAKVTFDGLNKQLKPVNKQVASQLATALQPQIHELIGQAETKANVERDNLIAQSIAKVDEELGDEIERLTALKAVNPSIRPIELESLIQQKTALHEHLKQARVKLDAVRLIVVSHN
>NZ_CP041660.1|WP_143870039.1|596307_596772_+|hypothetical-protein
MQKQYLIFPFLLACLISCSDNEVGDVSLGWFTTKDIKIDSLNDPIVTGVTCHISSIEADLDFADPSDSSISCRQTGQITPAMIAAIDKSKSGDIVFKKSKSIFFKNLKIRRIFDAENQTLLYVSYSTKETQGSYKHSMSTVPLWGTAAYETIQK
>NZ_CP041660.1|WP_143870038.1|595293_596265_+|hypothetical-protein
MKKFLLFFVLLILLSLVIVVLVLLWPNKAQQPSPAQTPADRYAAAEPPLSTQINIEKLNINEQPKIESLDDSDTPTDNSEKNKPHPSKPKITELQQIEALQQNIAHIDLDQYKKNATTEAYLAYLLALEKCLPFHRYINNAGKIEFTEQQINTTVEQHANNGFPKHVTQHMLDKINLCKNVKGEYLNRLYDEVTYVANHGNIQAMMLLSHMPSLNLALRKNIDKETRKNFYHKQVMWLEQARQQGSLNALFNLAVRYHHGVSPDAVAAASYYSALQHFMPEYEYTETVTVLTENMKTWQKAEVDKTTRLIIEEMQQLPELYNW
>NZ_CP041660.1|WP_143870037.1|595008_595281_+|hypothetical-protein
MKELARKIFAPVLRPFEAGAEPYHYKPLNRTILLVVGFLFLVLATTVYFLSPPGYGFLIPFTVFGAGGCLCLIIGLLGADRAVAKIWGNK
>NZ_CP041660.1|WP_143870036.1|594256_594961_+|DUF445-domain-containing-protein
MNMSLITNLLAASVTLIGYFTQQDIVFSVGLFALSGAFTNWLAVHMLFEKVPGLYGSGVIEAKFDNFRTAINNLIMTEFFNHENIDKFLTDQQGHASHFNFAPVIEQVDFEPAYDSLVATINESKFGSMLAMFGGSSAIEPLKEPFITKLKGKIIEISQTEEFNELVRDSLEKPDVIEELKDKVSNIVSTRLEELTPKTVKEIVQKMIREHLGWLVVWGGIFGGFFGLLAGLLG
>NZ_CP041660.1|WP_143870035.1|592019_594047_-|EAL-domain-containing-protein
MYAACYRLLKQFSLHSLKARVVLALVVSSLFATLLAVTGFSVVQYYKVHDQIQKDVEKNIELVSASLSEALWSFKEETVQYMASGLSQSQYIAATEVISETGERYLYGVKSGPPSLTQDLTHQQELVGNVDIWLDRKAINRYVIDSVLFVVSVYVVSAVLVSFIAIRVIGYMLSRHLSNIVSHMQSFKLDDSLRREIVLNRAPYIEDELSEIVNSYNRLGRETQDYFKAKRQYEKHLTYQANHDDLTGIANRRYGLHLLEEKIRSTSIDGKFALLFIDLDGFKDINDTHHHLVGDEILRIVSARLLDIGNVYGGFVARIGGDEFMLAVELDGIQLDALAKNLLQRIKEPYGIANDILNLSCSIGIAMYPEDADTATNLIANADTAMFQAKSSGKSQYKTFSAEMFEDLVVKSRLKAALKDALKNEQISVYFQPIFAIDDASIVGFEALCRWNHPEYGSIRPDIFIALAEETGDVVEIDRFVLEKVVKKLHKLEQTGARLFGTVNFCPLDFEQTDLIDHMAGLLERYPLTLNRLEVEVTERSMINESGNANIPLILQNMEKLGVKIAIDDFGTGYSALSYVKHYRSFISKIKVDRVFVRDIQHDTADVALVNSILSMAKGLGMTVVAEGIETEKQRDVLSSLGCQFGQGYLISKPLPIDEFCDLLNVQVDLARQTH
>NZ_CP041660.1|WP_143870034.1|591242_592040_+|DTW-domain-containing-protein
MPIDDYHLSINRAQDKIKCHFTVMSINLPTQNYQSVRQQRLARATRQFNARGIAVKRCPHCLVAQYACICSWKRTAPCNTEVILLMHSAEILKPTNTGRLISDVLADKCHVFEWSRTEPPAELVKMLNEPSRQCFIVFPTEASNRQVYSEKPDNQESKTPTLIILDGTWRQAKRMFNQSSWLKPFPCLQLNIAKVEDYGLRKAFSHEQFSTAQAAAFALAQLGEIPAAQVLQAFYSVFIWHYAESKMNRQPTLTDNHRLLVGLAR
>NZ_CP041660.1|WP_143870033.1|590534_591137_-|DUF2726-domain-containing-protein
MDLVVIIMMMVLVIVAAIAIRMTQTGSPFPYQKKNVLFSEPERAFLIKLEQAVGDKFRVVNRVKLVDLVQVENTVTKRAAQLAKTKASAKTLDFVLLDRKTLEPVAAIDLVNTESKQGYKARPDWFVRGALETVGIPHVRIKIRSGYKSAEIRECLSAKLGRGKLAPLNVKPVTPKGPTRPVKPLTARLADNVQQSQAVA
>NZ_CP041660.1|WP_143870032.1|589780_590473_-|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKIGIIGAMQQEVEILLQKIENCRAEQHGPCTIYCGQLNGRDVVLVQSGVGKTAAAMSTTMLLDNHKPYIVLNTGSAGGFASELNVGDLVISSEVRHHDVDLTAFGFEMGQGYGFPAAFESDETLIRRAEQAAAKQHDLQTKVGLICSGDSFMACPERVAKARSDFPQMIAVEMEAAAIAQVCAQFNTPFVVVRALSDIAGKESHGSFETFLEQAARHSSQLVMDFIQLS
>NZ_CP041660.1|WP_143870042.1|602578_603967_+|AAA-family-ATPase
MTEKMTKIYILDTNILLHEPFAFLNFQEHDVFIPMTVLEELDAIKDRKKDVSRDARIAIRALEDSLKDATPEEIADGVSMKRYSTEHGSTGKLAIYPDHLLTQDRVTLPGPENDNRIINAALHLQQDKAPRTVILVTKDINMRLKAKGAGMERVEDYRTDQLISDIKYLSTGYAEIKGDFWSQITNCESETEGRDAIHTVERSVLPKTVFINQYIFDEAHSFAGKVIEHNDETVKLKDLGFDRMMGRHAWGISPKNFHQAMAMDALLDTHIDLVLLTGPAGSGKTLLALAAALEMVVEQGIYEKIIVTRNTPEIAESIGFLPGTEEEKMAPWLGAINDSLDFLHRHDECRESSMRYIMEKANIQFKSVNFMRGRSIQKSIVILDECQNMTSSQLKTIITRAGEGTKLICCGNLAQIDSNYLSPLTSGLTYIVECFKDFEGSATVHIAGVMRSRLASFAEKNL
>NZ_CP041660.1|WP_143870043.1|604343_604559_-|DUF1289-domain-containing-protein
MTDKDLWGQHVANPCIGYCVLNDQNVCEGCGRTRDERTDWIFMSDDDKRKVLVSAEKRMEEIKKKNSQLPN
>NZ_CP041660.1|WP_143870044.1|604707_605028_+|Hpt-domain-containing-protein
MVINKPEALERLAGNEQLFVMLVKKFANQYENAASELETLLKENNLKDAAVMAHSIKGAAGNLSMNNLYEEAKVLEAELRNGEYKAESFAKFSTALNDVIHESKSW
>NZ_CP041660.1|WP_143870045.1|605041_605968_+|diguanylate-cyclase
MTNAIDNQQSVLIVDDQNINTLVLENALSPLYTVYTANGGQAALNILHSQTSIDLVLLDIQMPDLDGYQVLLDIRQNDATKNIPVIFISAKDAAEDEAKGLEFGAMDYITKPFNITVVKARVRNQLSLKKKSDLLEKLANIDGLTEVPNRRRYDEKLDLEWRRCARSSSPLSMIMLDIDAFKPFNDNYGHSAGDEILKQVASTLSKKIRRSGDEAFRYGGEEFVILLPETSFESSIRVAEMMREAIEALDIPHEYSPVEKHITVSLGVSSIVPVATMSAKTLQEFTDLQLYKAKNAGRNQVQGELLQV
>NZ_CP041660.1|WP_143870046.1|605984_606452_-|transcriptional-regulator-ArgR
MNNNDKQDKLLKVFKTLLNEQTFSSQADIVEALKDEGFDSISQSKVSRLLSRFGAVRTRNAKQEMVYCLPPELGLPTAESPLKQLVLDVSHNQAMIIVRTTPGAAQLIARMLDSLNKSHGVLGTIAGDDTIFIAPVDTSEIDKTCEHIEIFFDTV
>NZ_CP041660.1|WP_143870047.1|606890_607727_-|beta-lactamase-regulator-AmpE
MTLLSLIVVVLLERLVQVTETFHYRHYFNWYQDKVQSVLKKSESVSAEVFLLIWLAIPAVSVAVVQLLLGTGVLGLLFSIFILFLCYGCPQHRVCYKQYLEAACRGDQEACYLYGEKLGQKFNKGSKETLGQTLVWINFRHYFAVIFWFVVLGAAGAVFYVFSRNLAKQSLQKDNLRWLARPSNRLLAILVWLPARITGFAFLFVGHFSRALPTWLNGLTRCDLDARTYITDIADKAEDVSCPEHDYLTEPCVLLKLAKRAFLFLLSIIAIFTITGIL
>NZ_CP041660.1|WP_143870048.1|607723_608299_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MKTPAYSKINNHHILPDAVFKASPHFNDRPNVNNINLLVIHCISLPAEQFGLKYIDDLFLGCLDCDADASFNALSGLRVSAHVLIRRTGEVVQFVPFDKRAWHAGVSCFKGLDNCNDFSIGIELEGADNIEYEAIQYQQLAKVVRQIQCQYPLILNDNIVGHCDIAPGRKTDPGPAFNWDYFFNLLDKEKQ
>NZ_CP041660.1|WP_143872836.1|608336_608816_+|TIGR02281-family-clan-AA-aspartic-protease
MSYAAWIIAFFLLTYFFEGYLNKKENPNQNPESYYTNQGAIEVKLERNQHGHYVTNGKINQQIVTFLLDTGATNVSVPENIAKRLNLPYGPSQRVGTANGSINVYQTRIDVLEIGDIKLRNVAANINPYMQGEQILLGMSVLKRIEFTQRGSTLTLKQY
>NZ_CP041660.1|WP_143870049.1|609354_610218_+|DNA-ligase
MRKPRIGIKFALTIITFSIFFTLFILNPKAHADPRSLLLAEVYSPEIDITDYYVSEKFDGIRAYWDGEKLWTRNGNSINAPKSFTQGFPNIPLDGELWLKRNAFAQTLSIIKTGTEQNWAKISYQVFDLPSEQGTFNQRLIKMRTLEQQTNAPQLKWVKQFKVPSHAELKKTLEEYIAQGAEGLMLHHQNSYYQGKRSSDLLKVKKYLDADATVIAYQAGKGKFKGQMGALIVKTPKGQTFKIGTGFTNQERANPPPIGSLISYKYLGFTKNGLPRFAVFLKVKEED
>NZ_CP041660.1|WP_143870050.1|610224_611637_+|MBL-fold-metallo-hydrolase
MEYPNIQHHGAVDGVTGSCHRLCVSEQQHILIDCGLFQGAETSGKANQLIPEIDFPTEHIKGLIVTHCHIDHVGRIPWLIAAGFTGPIYCTPATAQLLPLVLEDAIKIGITKKKPFIEALLKRIKSQINAKPYKRWFNASGVQNVKIKFQPAGHILGSAYVEIEHQPTAHKYVFSGDLGAPHTPLLPAPRSPYRADTLVIESTYGDKKHTGRRQRRKQLQQVIEKCLQDRGAVLIPAFSIGRTQELLYEIEDIISRSKNNGLTNRNIWHSMQVILDSPLAAKFTEHYKSLSKLWDAEAQQKIVRHRHPLDFDDLYTIDSHEEHLNAINYIQKTATPCIIIAASGMCSGGRICNYLKALLPDKRTDVLFVGYQAKGTPGRDIQKYGPKGGYVVIDGEKIDIKAGVHTLSGYSAHADQKDLLNFVKRMRIKPKHIKIVHGDDDAKLALKKEYERILPEAKIEIASSESGSSL

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Crispr_ID: NZ_CP041660_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_2

619100-619323

Orphan

Consensus_repeat	Method
CCTGTAGGTCGTGGCTTTAGCCCGACAAATCTCGCAACATGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP041660_2

>merge|NZ_CP041660|2|619100-619323|CRISPRCasFinder
CCTGTGGGTCGTGGCTTTAGCCCGACATGTAGGTTGGCCTTTAGGCCAACAATCCATAAATAAACGCCAATGTCGCCCTGTAGGTCGTGGCTTTAGCCCGACAAATCTCGCAACATGCACATTGTCGCCCTAAAGGACGACCTACATTTAAGCTGCGAGCTTCGAGCAACGAGTAAACAACCTGTAGGCCGTGGCTTTAGCCCGACAAATCTCGCAACATGCAC

>NZ_CP041660|2|2|619100-619323|CRISPRCasFinder
CCTGTGGGTCGTGGCTTTAGCCCGACATGTAGGTTGGCCTTTAG	GCCAACAATCCATAAATAAACGCCAATGTCGC
CCTGTAGGTCGTGGCTTTAGCCCGACAAATCTCGCAACATGCAC	ATTGTCGCCCTAAAGGACGACCTACATTTAAGCTGCGAGCTTCGAGCAACGAGTAAACAA
CCTGTAGGCCGTGGCTTTAGCCCGACAAATCTCGCAACATGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143872836.1\|608336_608816_+\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|133150
NZ_CP041660.1\|WP_143870060.1\|623621_624581_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187550
NZ_CP041660.1\|WP_143872837.1\|618712_619093_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP041660.1\|WP_143870057.1\|619409_621614_-\|YjbH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377600
NZ_CP041660.1\|WP_143870055.1\|616989_618156_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NZ_CP041660.1\|WP_143870056.1\|618285_618720_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_CP041660.1\|WP_143870053.1\|615000_616365_+\|phosphomannomutase-CpsG	unknown	unknown	gnl\|CDD\|185312
NZ_CP041660.1\|WP_143870059.1\|623169_623619_-\|GDP-mannose-mannosyl-hydrolase	unknown	unknown	gnl\|CDD\|237966
NZ_CP041660.1\|WP_143870052.1\|613338_614748_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NZ_CP041660.1\|WP_143870066.1\|629734_630883_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NZ_CP041660.1\|WP_143870064.1\|627619_628711_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP041660.1\|WP_143870050.1\|610224_611637_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP041660.1\|WP_143870063.1\|626595_627579_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|223528
NZ_CP041660.1\|WP_143870051.1\|611878_612736_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181612
NZ_CP041660.1\|WP_143870065.1\|628707_629748_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838
NZ_CP041660.1\|WP_143870054.1\|616583_616928_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NZ_CP041660.1\|WP_143870062.1\|625480_626599_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP041660.1\|WP_143870061.1\|624606_625359_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NZ_CP041660.1\|WP_143870049.1\|609354_610218_+\|DNA-ligase	unknown	unknown	gnl\|CDD\|181662
NZ_CP041660.1\|WP_143870058.1\|621902_622985_-\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|131433

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143872836.1\|608336_608816_+\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|133150	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	4.52478e-31
NZ_CP041660.1\|WP_143870060.1\|623621_624581_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP041660.1\|WP_143872837.1\|618712_619093_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.35174e-13
NZ_CP041660.1\|WP_143870057.1\|619409_621614_-\|YjbH-domain-containing-protein	gnl\|CDD\|377600	pfam06082, YjbH, Exopolysaccharide biosynthesis protein YbjH. YjbH is a family of Gram-negative beta-barrel outer-membrane lipoproteins that act as putative porins. YbjH is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjH and F are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	1.47006e-07
NZ_CP041660.1\|WP_143870055.1\|616989_618156_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NZ_CP041660.1\|WP_143870056.1\|618285_618720_-\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	8.08408e-21
NZ_CP041660.1\|WP_143870053.1\|615000_616365_+\|phosphomannomutase-CpsG	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP041660.1\|WP_143870059.1\|623169_623619_-\|GDP-mannose-mannosyl-hydrolase	gnl\|CDD\|237966	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase.	7.41957e-66
NZ_CP041660.1\|WP_143870052.1\|613338_614748_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP041660.1\|WP_143870066.1\|629734_630883_-\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	7.45539e-19
NZ_CP041660.1\|WP_143870064.1\|627619_628711_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	8.09223e-27
NZ_CP041660.1\|WP_143870050.1\|610224_611637_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	2.95449e-98
NZ_CP041660.1\|WP_143870063.1\|626595_627579_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.2607e-28
NZ_CP041660.1\|WP_143870051.1\|611878_612736_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181612	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase.	5.96485e-145
NZ_CP041660.1\|WP_143870065.1\|628707_629748_-\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.95474e-65
NZ_CP041660.1\|WP_143870054.1\|616583_616928_+\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	2.76134e-38
NZ_CP041660.1\|WP_143870062.1\|625480_626599_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP041660.1\|WP_143870061.1\|624606_625359_-\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.9315e-82
NZ_CP041660.1\|WP_143870049.1\|609354_610218_+\|DNA-ligase	gnl\|CDD\|181662	PRK09125, PRK09125, DNA ligase; Provisional.	1.75576e-147
NZ_CP041660.1\|WP_143870058.1\|621902_622985_-\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.22382e-119

>NZ_CP041660.1|WP_143872837.1|618712_619093_-|nucleotidyltransferase-domain-containing-protein
MCLLDKIKQLAAAHHDIDVLWLYGSRARNSADQNSDYDLAVLFSSFHHDVLERRLRPELLAMDWQQALGCSLSVIDITQVSVPLAYTVVQDNCVLLSKDDFKQLETERIIMSKWDIDYQHHLKHYA
>NZ_CP041660.1|WP_143870056.1|618285_618720_-|DUF86-domain-containing-protein
MLEAYARSIQEHIRENHQDLVELENVLNSRSWTRIERKAAERVLQILVESCIGISKHWLKLNKINVPSDTYQVFVKVCELGAISQDELVVWRKIVGMRNAIVHDYLNLEPAILVAIIKQQLYLDVVNYGLKMSERLCGSCRSSD
>NZ_CP041660.1|WP_143870055.1|616989_618156_+|nucleotide-sugar-dehydrogenase
MKIAVAGTGYVGISNAVLLAQHNEVVALDIVKEKVDLLNNKKSPIEDEYIQEYLANKPLNFRATLDKEEAYKDAQYVVIATPTDYDPETNYFNTRSVEAVIKDVMSINPDAVMIIKSTVPVGYTADIKQQLGCENIIFSPEFLREGKALYDNLYPSRIVLGEQSERAKVFADLLVQGAIKENVDVLFTDVTEAEAIKLFSNTYLAMRVAYFNELDTYAERHGLNTRQIIEGVGLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYHDVPNNLIAAIVDANTTRKDFIADSIIRRNPKKVGVYRLIMKAGSDNFRASSIQGIMKRIKAKGIEVVIYEPVLEEDTFFNSKVIKDLNEFKEMSDVIVSNRMSESLQDVADKVYTRDLFGSD
>NZ_CP041660.1|WP_143870054.1|616583_616928_+|four-helix-bundle-protein
MYYEKLAIWQRSKALTIDVYSTLSNLRDYGFKDQITRSILSVPSNIAEGMERYSDIDKARFLVIAKASIGEFKTQTDIGVEIGYIPLQTGTVWMNEAEQISKMIGSFIHTLKSN
>NZ_CP041660.1|WP_143870053.1|615000_616365_+|phosphomannomutase-CpsG
MNKLTCFKAYDIRGKLGEQLNEDIAYRIGRAYGEILKPKTVAVGGDVRETSETLKLAVAEGLTDAGVEVLDIGMSGTEEIYFATFHLKLDGGIEVTASHNPIDYNGMKLVKSGSQPISGDTGLFDIQKMAEENNFPPVTQKGSIKTVSIIEDYTAHLLGYINLNNIKPLKIVANSGNGAAGHVIDKIEAEFAAKQIPIEFIKVHHNPDPSFPNGIPNPLLPENRADTANAVKEHKADMGIAWDGDFDRCFLFDENGEFIEGYYIVGLLAEAFLQKHQGAKIIHDPRLAWNTVDIVKKSGGEPILCKTGHAFIKERMRKEDAIYGGEMSAHHYFKDFAYCDSGMIPWLLVAELLCVKGQSLSSLVKERIAAYPSSGEINSKLDDPKAAIERVKAKYSNDALEIDYTDGLTMVFENWRLNIRCSNTEPVLRLNIESRADITLMEQKTEEVLSLVRK
>NZ_CP041660.1|WP_143870052.1|613338_614748_+|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MFLPVIMAGGSGSRLWPLSRSAYPKQYLPLTSDSTMLQETVLRLKGAQHRAPMVICNEDSRFMVAEQLRAINALQSPVILEPVGRNTAPAIALAALQAVADGDDPLLLVLAADHVIKNQQAFINAIAQAEKLAEQNAMVTFGIVPTHAETGYGYIKRGASQDDAYKVDAFVEKPNLETATEYLNSGEYYWNSGMFMFKASRYLSELEKYQPEILAACKKAIGNTSADLDFVRVDKAAFEACPDDSIDYAVMEKTDSAVVVPLDAGWNDVGSWSALWEVNDKDENGNAVRGDFIGENSKNCLVYGSVEGRLVATVGVEDLVIVDTKDAVMVAHKDKVQDVKTIVNKLKAEGRSESKFHREVYRPWGKYDSIDNGARYQVKRITVKPGAKLSVQMHHHRAEHWIVVSGTAKVTNGDKELLLTENQSTYIPVGVIHALENPGKVPLELIEVQSGSYLGEDDIVRFEDRYGRV
>NZ_CP041660.1|WP_143870051.1|611878_612736_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MDSQLLQNTQKIVAQALFEDLNGDDANNDITAQLIPAEQVISANVICREEAVFCGKGWADETFKQLGATVDINWHCQDGDRLSENQLICTLHGPARAILTGERTALNFIQTLSATATATSIYADKIAHTNTRLLDTRKTIPCLRVAQKYAVACGGGVNHRVGLYDAFLIKENHIMAAGSIANAVTQAHKIAPGKKVEVEVENNDELKQALDAGADIVMLDNYSPAEIQSAVAVNKAHANTAKIEVSGDITIDTIVDYAQDGVDFISSGALTKHVRAIDLSLRVSG
>NZ_CP041660.1|WP_143870050.1|610224_611637_+|MBL-fold-metallo-hydrolase
MEYPNIQHHGAVDGVTGSCHRLCVSEQQHILIDCGLFQGAETSGKANQLIPEIDFPTEHIKGLIVTHCHIDHVGRIPWLIAAGFTGPIYCTPATAQLLPLVLEDAIKIGITKKKPFIEALLKRIKSQINAKPYKRWFNASGVQNVKIKFQPAGHILGSAYVEIEHQPTAHKYVFSGDLGAPHTPLLPAPRSPYRADTLVIESTYGDKKHTGRRQRRKQLQQVIEKCLQDRGAVLIPAFSIGRTQELLYEIEDIISRSKNNGLTNRNIWHSMQVILDSPLAAKFTEHYKSLSKLWDAEAQQKIVRHRHPLDFDDLYTIDSHEEHLNAINYIQKTATPCIIIAASGMCSGGRICNYLKALLPDKRTDVLFVGYQAKGTPGRDIQKYGPKGGYVVIDGEKIDIKAGVHTLSGYSAHADQKDLLNFVKRMRIKPKHIKIVHGDDDAKLALKKEYERILPEAKIEIASSESGSSL
>NZ_CP041660.1|WP_143870049.1|609354_610218_+|DNA-ligase
MRKPRIGIKFALTIITFSIFFTLFILNPKAHADPRSLLLAEVYSPEIDITDYYVSEKFDGIRAYWDGEKLWTRNGNSINAPKSFTQGFPNIPLDGELWLKRNAFAQTLSIIKTGTEQNWAKISYQVFDLPSEQGTFNQRLIKMRTLEQQTNAPQLKWVKQFKVPSHAELKKTLEEYIAQGAEGLMLHHQNSYYQGKRSSDLLKVKKYLDADATVIAYQAGKGKFKGQMGALIVKTPKGQTFKIGTGFTNQERANPPPIGSLISYKYLGFTKNGLPRFAVFLKVKEED
>NZ_CP041660.1|WP_143872836.1|608336_608816_+|TIGR02281-family-clan-AA-aspartic-protease
MSYAAWIIAFFLLTYFFEGYLNKKENPNQNPESYYTNQGAIEVKLERNQHGHYVTNGKINQQIVTFLLDTGATNVSVPENIAKRLNLPYGPSQRVGTANGSINVYQTRIDVLEIGDIKLRNVAANINPYMQGEQILLGMSVLKRIEFTQRGSTLTLKQY
>NZ_CP041660.1|WP_143870057.1|619409_621614_-|YjbH-domain-containing-protein
MMTVRYLSLNNLCNLTSATSVFKLAVLCLPFAFNSWADESASTSTSSNASSSPYVTPSLQGFGGYFNTPSAYSFGGGQGVFMYSNQTERLGSYRTTPNFHFAAGLWDNLEVSGRNAAYEDTTSKSSDLSANIKFALPYIPENWFKLAVGIQDLGGAANHFDSKYVVLSRYFADYNFDASVGVGQSESRLGRLDGTFAAVKWQPYDWGAVLLEHDAISTNYGIELSTPKNWLGGHTRFFAKAMLGASEDALSDETYWGIGLNTNLYQARADIEPARIKYVAEPDYVKNNTANQDAFLLIRQALRARGFTDFKIGTAGYQADSQKQHLVIAVENNLYSGNHIDTFAVVLSIVSKMSPESVEHFTVQILQSGIQVDAVSGNLNDYRAFLQGADLKLAEQPNNAGDSVNWLKEDSSFFIKPKLTFYPHLVTTVGTELGMLDYSLAWATHLELPIPLWPGLTATAFHLKQLRETEDFRDGKFFAGSRQQTGIHNLMLHQTFELPFNTKLMLNYGEFSQDYRLSAVEAGWQSDNGQHHLFYYYGQYNHTGEKELGYDQACVKDPSKPLYDCYGVLPQYNDKTISVAKYRYYSPWLNTSFFTKYGKFWSGDEGLHLLVSRHFDDVEVNLQFKATKNADEGLMQGFVYEDEYQKTIGLGFTVALGPRKDFNSRYINIRGRADWSYIVNTLVGEEHNGLTYGLASEARTFYHLDNHFNNFGRKGLSYLYKHQDRLRAAYFELR
>NZ_CP041660.1|WP_143870058.1|621902_622985_-|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MEIIAAIAISFASVFILQPFAEKIGLVDKPNARKLHKGSIPLIGGIAFYIATLTACLVAFPGDKLITLFLISSAFVVFLGVLDDYHNLSVRSRIVSQILIASIMVYGAGKYIHNLGDLVGLGVIDIGIAGTILTFIAVIGAINAFNMTDGIDGLAGSLALNTFASIGILFYLTEQGSLLALPVILVCAIIPYLAFNLSLVPGPVKKIFMGDAGSMFIGLSVIWLLTLGTQSDAPAFRTVTALWIIGIPLMDMAAIIYRRVRKGQSAFLPDRDHLHHIFLRAGFSSRQSLAIIFSLSLLYSGFGIAGEIYQLPEWFMFVSFLAVFVLYCYALMHVWKLVRFVRRATVKRLRKKQARLASAK
>NZ_CP041660.1|WP_143870059.1|623169_623619_-|GDP-mannose-mannosyl-hydrolase
MFLAKATFKTLVASAPLISIDIIVENDKQEILLGKRLNKPAQGYWFVPGGRVYKNESLESAFQRIAESELGSPLAIAKADFMNVYQHFYKDSFVDEHVSTHYVVLAYKVKSNLESLVLNSQHESYKWFSVEEALNSDLVHNYTKDYLNF
>NZ_CP041660.1|WP_143870060.1|623621_624581_-|NAD-dependent-epimerase/dehydratase-family-protein
MKKIFVAGHKGMVGSAIVRQLENQPDIEIIVRDRSELNLLDQAAVAEFFKTENIDQVYLAAAKVGGIIANNTYPAEFIYENLMMECNIVHSAHLAGVNDLLFLGSSCIYPKLAEQPMKEEALLTGTLEPTNEPYAIAKIAGIKLCESYNRQYGRNFRSAMPTNLYGENDNFHPENSHVIPALIRRFHEAKLNNASEVIAWGSGKPMREFLHVDDMAAACIHIMNLDDETYQANTQPMLSHINVGTGVDCTIRELVETVAKVVGFEGEIKFDATKPDGAPRKLMDSSRLEALGWKYTISLEDGLAQTYQWFLNNQNKFRG
>NZ_CP041660.1|WP_143870061.1|624606_625359_-|glycosyltransferase
MSLKVSIITATYNSANTVVDAIKSVNNQTYQNIEHIIIDGASKDNTVEVVKEVGERVGILVSEPDKGIYDALNKGINVATGDVIGFMHSDDIFSDENAVQNIVDAFEKSLADSVYADLDYVQKEDTSKVVRKWVSGDFKFEKLKSGWMPPHPTFYMRREKYQALGGFNLGYKIAADYDSILRYLWKGQVTTHYIPKVLVKMRVGGASNRSLKNIIRKSKEDKLALKTNGLPWLRALTFKNLSKIPQFLKK
>NZ_CP041660.1|WP_143870062.1|625480_626599_-|GDP-mannose-4,6-dehydratase
MKKALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASLFNTERVDHIYQDPHESNPKFFLHYGDLTDSSNLTRILKEVQPDEVYNLGAQSHVAVSFECPEYTADVDAIGTLRLLEAIRFLGLEKKTKFYQASTSELYGEVQEIPQKETTPFHPRSPYAVAKMYAYWIAVNYRESYGMYACNGILFNHESPRRGETFVTRKITRGIANIAQGLEKCLYLGNMDALRDWGHAKDYVRMQWMMLQQDKPEDFVIATGKQISVREFVKLSAQNAGIEVEFSGEGVDEIATVAAITDAEKAPALNIGDVIVKVDPKYFRPAEVETLLGDPSKAKAKLGWVPEITVEEMCAEMVAHDLDKAKQHALLKSHGHSVSVSVE
>NZ_CP041660.1|WP_143870063.1|626595_627579_-|NAD-dependent-epimerase/dehydratase-family-protein
MSFKKVLVTGGSGFIGTNVVQYLMSKSDHFQVLSLDIEPPKNIAAVTVHKQVDLRNRSETFSAINEFKPDVVIHMAARTDLDGVSLDDYDSNTLGVKTLCEAIIECGTVSKFLVFSSMLVCGIGYYPKDDDDYSPTTIYGHSKVETELITKSFLQELPQTYIVRPTSIWGPWFGVPYRNFFDVVLAGKYFNPGIKSIKKTYGFIDNALTQVFNLVDSDGYETGKIFYLGDKKPINIVEWANIISRKAGKKAPFTMPKILCLGLAKFGDFLKIFGMHFPLTSFRLKNMTTENIIPANYLAPIDEEEVVSLEEGVSQTLNWINKGKDLK
>NZ_CP041660.1|WP_143870064.1|627619_628711_-|glycosyltransferase
MSKVIVLHDFDGSLYFKALESVAEVQYFNIQPFRFLVRDIVKHRKMQKSTVNSLLFILSMFFKRNATVIIGTAPFNFRFLIYAFILSGKNKVYLHTSWPYWVESPPVRYPSFLNKLAKKLWIKSLPKLNGVIAVTKATKNSVMNFLESNQCKVPYAVTQIYHVVDISKISDKLFSDKWQKPENVTFLGRLEAEKGISEFLELSKNFSERETLKFQVIGKGSLEKKVVHWAGSSGNNVYHGFISSRGKIKELLAKTNVLVLPSKRIPGWEELFGLVIIEAMSQGVIVLTTDHIGPKEIIENGYDSFFCPEERFITFASTILDQLSEQPVKYSQIAQKAIVKSQAFNMAAIGREWKEFLKVNKLD
>NZ_CP041660.1|WP_143870065.1|628707_629748_-|glycosyltransferase
MTTNKIALDCRLVSRNATGISRFSLKYTDFIIEKFGEKNIVLIVNEPIQGYEHIEQCLTDFKPFNFYHWLRFHKLVAKLKPTHYISFHYSGLSKKLSNIKTVVTVHDLMYELVPTFFGSKFISFLGRLYYRPIVSRSLKNSDLILTISETSKKDIKSIFNLDSVNTSEGVFLNAPEVESFLDSIGLVSKSYFLYAGNGRPHKNIEQLKRVFLKYRQSNQEACLVIVGHKGDSQGGIVYPGHVSDGELVNLYTNAKAFVFPSLYEGFGLPIVESLNYNTPVIASDIPAFREFQHNNIYYFDLNNDESLLRLLGSELSFDHATKHNILKQYDWDVIKQKLYKALEGLF
>NZ_CP041660.1|WP_143870066.1|629734_630883_-|glycosyltransferase
MKVFFIDESKIFGGHEIIFLGYLKGVLSTTSFHVRMLIDKDNLKLREALIQLEKDFVNFNFVELSFSKLKVRPLTNFLCIKDFFSIRQTIKHFSPDICVVVQGTIEIGSLSLLVSRFSGIKTLSYLPITKKSKDIGVFLGGIRDRINKAIYYKLPHEIITISKFNQQELLNNFDVPLSKSAIVYNFTDVIPSSEYPQKRGNDFNFAIIGRVDNLQKRQYDFFKEVLKHKIASNLFFHVIGDNESEESNELRHLCHDSERVIFHGWCSSDEVETLLDRMDGVIIPSNFEGVPLVMIDAINKNKIVIASAIDGMLECLPREFLFEKGDYRGALALLHDITGNPNLYFTLVEHCKKQFAVFNKEKNLQAFIKRINFHLGIMDDYK

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Crispr_ID: NZ_CP041660_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_3

844627-844773

Orphan

Consensus_repeat	Method
AAGTTTCGCCAGCATTGTAGGTCGTGGCTTTAGCCCGACAATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_3

>merge|NZ_CP041660|3|844627-844773|CRISPRCasFinder
AAGTTTCGCCAGCATTGTAGGTCGTGGCTTTAGCCCGACAATCAGGCAAAAAGCTACAAGCTACAAGTTTCAAGTTTCAAGTTTCAAGTTTTAAGTTTTAAGTTTCGCCAACATTGTAGGTCGTGGCTTTAGCCCGACAATCAGGCA

>NZ_CP041660|3|3|844627-844773|CRISPRCasFinder
AAGTTTCGCCAGCATTGTAGGTCGTGGCTTTAGCCCGACAATCAGGCA	AAAAGCTACAAGCTACAAGTTTCAAGTTTCAAGTTTCAAGTTTTAAGTTTT
AAGTTTCGCCAACATTGTAGGTCGTGGCTTTAGCCCGACAATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143870216.1\|829817_832733_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP041660.1\|WP_143870218.1\|836956_837850_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP041660.1\|WP_143870223.1\|844932_846369_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP041660.1\|WP_143870228.1\|852711_853647_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870222.1\|843345_844518_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|168661
NZ_CP041660.1\|WP_143870226.1\|850903_851635_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|223979
NZ_CP041660.1\|WP_143870224.1\|846539_847712_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380485
NZ_CP041660.1\|WP_143870220.1\|839143_841084_+\|glycoside-hydrolase-family-97-protein	unknown	unknown	gnl\|CDD\|371140
NZ_CP041660.1\|WP_143870214.1\|827235_827997_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041660.1\|WP_143870227.1\|851751_852522_-\|ThuA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377643
NZ_CP041660.1\|WP_143870221.1\|841233_843066_-\|cyclic-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|378049
NZ_CP041660.1\|WP_143870215.1\|828079_829561_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143430
NZ_CP041660.1\|WP_143870225.1\|847801_850387_-\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NZ_CP041660.1\|WP_143870217.1\|832870_836338_-\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350153
NZ_CP041660.1\|WP_143870230.1\|856109_856553_+\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP041660.1\|WP_143870229.1\|853683_855852_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP041660.1\|WP_143870231.1\|856562_858053_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NZ_CP041660.1\|WP_143870219.1\|837882_839043_+\|galactose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
NZ_CP041660.1\|WP_143870232.1\|858083_859613_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225569
NZ_CP041660.1\|WP_143870213.1\|825994_826795_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143870216.1\|829817_832733_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	1.44738e-134
NZ_CP041660.1\|WP_143870218.1\|836956_837850_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.32097e-05
NZ_CP041660.1\|WP_143870223.1\|844932_846369_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.85316e-160
NZ_CP041660.1\|WP_143870222.1\|843345_844518_-\|NAD(P)-binding-protein	gnl\|CDD\|168661	PRK06753, PRK06753, hypothetical protein; Provisional.	2.25484e-57
NZ_CP041660.1\|WP_143870226.1\|850903_851635_+\|NUDIX-domain-containing-protein	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.25085e-16
NZ_CP041660.1\|WP_143870224.1\|846539_847712_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380485	cd01543, PBP1_XylR, ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.73502e-97
NZ_CP041660.1\|WP_143870220.1\|839143_841084_+\|glycoside-hydrolase-family-97-protein	gnl\|CDD\|371140	pfam10566, Glyco_hydro_97, Glycoside hydrolase 97. This domain is the catalytic region of the bacterial glycosyl-hydrolase family 97. This central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, form two additional non-catalytic domains. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.	2.36602e-78
NZ_CP041660.1\|WP_143870214.1\|827235_827997_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.43185e-26
NZ_CP041660.1\|WP_143870227.1\|851751_852522_-\|ThuA-domain-containing-protein	gnl\|CDD\|377643	pfam06283, ThuA, Trehalose utilisation. This family consists of several bacterial ThuA like proteins. ThuA appears to be involved in utilisation of trehalose. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium.	1.15831e-90
NZ_CP041660.1\|WP_143870221.1\|841233_843066_-\|cyclic-nucleotide-binding-protein	gnl\|CDD\|378049	pfam08787, Alginate_lyase2, Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426.	4.5256e-65
NZ_CP041660.1\|WP_143870215.1\|828079_829561_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143430	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.	0
NZ_CP041660.1\|WP_143870225.1\|847801_850387_-\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	2.04197e-86
NZ_CP041660.1\|WP_143870217.1\|832870_836338_-\|family-43-glycosylhydrolase	gnl\|CDD\|350153	cd18832, GH43_GsAbnA-like, Glycosyl hydrolase family 43 protein such as Geobacillus stearothermophilus endo-alpha-1,5-L-arabinanase AbnA. This glycosyl hydrolase family 43 (GH43) subgroup includes mostly enzymes with alpha-L-arabinofuranosidase (ABF; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. It includes Geobacillus stearothermophilus T-6 NCIMB 40222 AbnA, Bacillus subtilis subsp. subtilis str. 168 (Abn2;YxiA;J3A;BSU39330) (Arb43B), and Thermotoga petrophila RKU-1 (AbnA;TpABN;Tpet_0637). These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. Many of these enzymes are different from other arabinases; they are organized into two different domains with a divalent metal cluster close to the catalytic residues to guarantee the correct protonation state of the catalytic residues and consequently the enzyme activity. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	4.5946e-125
NZ_CP041660.1\|WP_143870230.1\|856109_856553_+\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	9.82829e-57
NZ_CP041660.1\|WP_143870229.1\|853683_855852_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP041660.1\|WP_143870231.1\|856562_858053_-\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP041660.1\|WP_143870219.1\|837882_839043_+\|galactose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	1.34795e-170
NZ_CP041660.1\|WP_143870232.1\|858083_859613_-\|CYTH-domain-containing-protein	gnl\|CDD\|225569	COG3025, COG3025, Uncharacterized conserved protein [Function unknown].	6.23637e-81
NZ_CP041660.1\|WP_143870213.1\|825994_826795_-\|PAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	1.61348e-41

>NZ_CP041660.1|WP_143870222.1|843345_844518_-|NAD(P)-binding-protein
MNIGILGGGIGGLSSAIALKQRGFKVDVYERHAGPSEIGAGIVCWPNASFVLEQLGVLPQVAKVAGLISFMKRYSSEGEALGSMDIRKLNNLMAYPSYSILRKDLMRILTQRAYELGILIHYQHNVQSLSENITEHKQNTAVHFTNGRTIHPDVIIGADGRMNSMARLFVTGDHKPVFQKFINWIGVFESDSEIFQDKAVSDYWGVGQRFGVVPISKSKAYWAAGVVAEEIDDIKVDTFKPDLTNLFRGWPDPIFKIITQTPLASIGKIYVHDHDPINNWHKGNVLLLGDSAHAPLPTSGQGACQALEDAWHLARYLEEYSEELNLALSKFTAARMTKTQGITMAGRQLAASIFNEDKAYCQERNIRSKDTDYGLVVSGMAKNWSFGLPI
>NZ_CP041660.1|WP_143870221.1|841233_843066_-|cyclic-nucleotide-binding-protein
MKTTTHNNYLAYCISGILAACGASQVNAAEVAITNPGFESSWDGWNDTDPSAISGDAYTGNRSAKMTGSSGRAEQSVSVSTNTQYRLTAYIKGSGEIGAVAGGTTYSQSGGDSSWQQVSVEFNSGSNTSVTLFAQYNGGEGRFDEFKLESISTPTPTPTPTPTPSGVDCSGSSDLTIVDASDDGTHDGHGPDNTIDDDLSDGSRWSSNGSGKSITYDLGVLSKVKDIQLAWFKGNTRVSYFDIDTSANNNDWTSVLVNEQSSGSSAGFETYNFADTDARYVRVTGYGNSSNTWNSIIEANIRGCTDGNTPTPTPTPTPTPTPTPAGDLDPNLPPSGNFDLLDWTLGVPVDDNNDGKSDTIKENQLSSGYEHSQWFYTAADGGMVFRAPIDAPKTSTNTSYTRSELREMLRRGDTSISTQGVNGNNWVFSSYSSSDRNAAGGVDGELTATLKVDHVTSSGSSSQVGRVIIGQIHAKDDEPARLYYRLLPGHTKGSIYLAHEPGNGNSEQWYNMIGDRSSSASEPSDGIELGEVFSYSIKVTGNTLTVTIYRDGKSDVVQTVDMSNSGYHDGSDQYMYFKAGVYNQNNTGDGDDYVQATFYSLDNTHNGYNY
>NZ_CP041660.1|WP_143870220.1|839143_841084_+|glycoside-hydrolase-family-97-protein
MFKHTLTLLGATLITACSQSPNLTLQSPDHAIQVKLEFDENQQLFYSVYRNNVEVIESSELGLVFKDRVFASNLTLSEQSDVSKIIDTYQLYSAKVKNVAYQANEQTFTLQNENQQKLNIRFRVSNDGVAFQYQVLASQEDNADQQIELLDELTEFDFNMQTRAWLQPVAKAQTGWSNTNPSYEEHYLMDIAVDTPSPTGAGWVFPALFKSANTWVAISEAGIQAQHNAARLSSESPNGQYEIDKPMDAEVFTDGKLMSNGGLPFQTAWRIIALGDLKTVSESTLGTDLAEPNKIQNTDFIKPGIASWSWGLLKDDFTIFSVQKEFVDHAADMKWQYTLVDADWDQKIGNEKMQELTDYAASKGIGVLVWYNSSGEWNTTPYTPKHALLTQKQRRAEFKKLNEMGIKGVKIDFFAGDGQSMMQYYIDILQDAADYELLVNFHGATLPRGLNRTYPNLMTSEAVHGFEMITFSQKSADLAASHSAMLPFSRNLFDPMDFTPTTFNDIPNIERKTTNAFELAQSVLFVSGIQHIVETPAGMKNTPYYVKQVLQEIPASWDESVFVEGFPGKLAVFARRTDKQWYIAGINGEQKTKTLTLDLSQFTGKNAFIIKTGEGQANMVRSPIKLTDDTKVSLLANDGFLIQVKE
>NZ_CP041660.1|WP_143870219.1|837882_839043_+|galactose-1-epimerase
MFNSPIKKIKLLAVLTTVLAGCNTISEQQNNTDNKQLKPIKSQYYATLPNGEVVTEYTLTNPTGIEVSIISYGGIITSLKTPDRNGKLADIVLGYDSIDGYLTDSNFFGALIGRYGNRINKGQFTIDGIQYQLDTNDGENHLHGGDVGYDSKNWFVTPYVDGADVGLKMQLFSPDGDAGYPGNLTVQVDYRLAGNELKIDYKATTDKKTHVNLTQHSYFNLAGEGDILDHQLMIPAEYITPVNSSLIPTGDFMPVKGTPFDFRTATPIGQGINQKNQQLEYGLGYDHNWVLTTENNFEYKLAARLSEEKSGRVLEIYSEEPGIQFYSGNFLNGSAKGKGRTFEYRNGLCLEPQHFPDAPNQSRFQSTLLNPGEVYHTRMSYKFTTE
>NZ_CP041660.1|WP_143870218.1|836956_837850_+|transporter-substrate-binding-domain-containing-protein
MRNLYWKKWCLVFMSLVLTSQPCFALAEKLTIRHNKVEGIGAKEEYQFGLLKLALDYDAQNTYQYQPASRFLPQVTMMEQLKAGEIEVAWTGTSKELETELLPIRIPLYKGLLGHRIFIIREGNQAKFDAVDTFSDLQRLTAAQERTWADTKILRSAGIPVIGTRRYENLFYMLEGGRYDYFPRGVHEPWSEIAARPELPLTVEKHILLKYPMPAYFFVRKDNFNLANKIEAGLRQAIRDGSFDDYFFSNPMIKDVIEKAHLTERVMFEIDNPNIPDATPFEDPSLWLDINNLPLSK
>NZ_CP041660.1|WP_143870217.1|832870_836338_-|family-43-glycosylhydrolase
MKFKLTVLAGIVALSGCTESGEDKKDLPTTTLPNNSDYIAADPTASISDSSAYNDFAVHDPSVIKADGAYYVFGSHFGVAKTTNLMTWEAATRAPFDDYETEAAEGIAWSDGFVGNWAANVIQAPNGKFWFYYNHCAFDNPNTEERDEVCWHRSYMGLAEADSIEGPYVNKGLFLRTGHTDEEIQGDFPVYDPATGENLDSYNPAVHPNGIDPTAFYDKDGNLWMIYGSYSGGIYILAMDETSGMPEPDQGFGKHLVGGDFNAIEGSFMMYSPESDYYYLFWSYAGFAADGGYNIRVARAKTPDGPFLDAAGNDMVNARTANNMGNKLMGSHLWTSSYGDPSAQYGYNAPGHNSALYDAELGKHLLFTHTRFPQEEGRFENIEAHSIRIHEMWINSDGWLVASPHRYAPIEGENIADPEDIAGDYRLILQGNDSNNDEHESVYVTLTNQGRYIQGQVSGSYRLYPSEGGRVSLTIDDVTYKGHAKWQWNVEDQRLEVVISAMSSAGESVFAAQLPEKSVSQIVDDISLAIDQTFANPVTPGELLPVTKDLNFSTEGARGATISWSTSHPRFVSSTGKVTRPNVDEGDTVVTLTANVELKGQTATITKDVKLIARSTYNRTAHYSFDSSLTDGLMNFDNAIAIGANLTKPESADVEPVNADIGSETFVEGQVGQAVNLDGSYGILLPNNIIASDQYTVSFWMNERADMQFSPALFVGHTADPFERWISFLPSSWDANLMVWARHDEDDGAFPWFDAVTGVAYPDQEWHHVAYAYNQGSVEVFFNGESVGTGSGLEDFFTNKPASTTISLGVNYWNLPLNAYIDEFKVYDDALSAAEIKALDVDILPADQLLSIAEQDLDLGNLNSVIDNLILPHTGPFASALSWSSSDDSVINPQTGEVTRPERGQADVEVTLTATITLDGQSTTKEFVANVISKTPPAPVARFSFEDNVEDTTGNFAAGEAADKTETTPLITPSNQTLTYAPGVVGSALDFKGDEGPGVKLPNGLIQDYSYTISLWLNPTVKTQFTTAFFGYAASNSWVSLVPFGPGAGDTMLWSGEAWFDGTIGSQIPAGEWSHVVLVVNEGVFNAYLNGELVNTLNGFPDVFTPAGANSKFALATNLFPVDANYNGLMDELVIYDDPISVDDVQALYSERSAQ
>NZ_CP041660.1|WP_143870216.1|829817_832733_-|TonB-dependent-receptor
MFKPSLVSSAIATALFAFSHNAIAQEAQETEVDNDVEVIQVSGIRASMIKAVDLKREEIQVVDSIVAEDIGKFPDNNVVEALQRVPGIQVTDRASGEVNAVSIRGLSDVTTTINGRQIFISTGRGYTLADTPAALIAGVDVYKTRSASQVETGIAGQIDVHTQRPFNFDGFKLVAAARGIYQDQAKEFDPNVSLMLSNRWQSSIGEFGALVNVAYAETNWRDMNITSGAAVPFAGPEPQSPNLQPFQRINGGWQAGLLEGLPFAEGSTLTIDGVEEEYFLARDAVFASDFTGKRERPAANISLQFRPNDQSEYLFEAFYNGYRAQSFNSLFFTFVDSNADTNFNDDFKVFEGTNIIKERTVYGAGGFNSGDAGIGKTDSYVYALGGKWEITPDFKLESEIVMQNSTFESEFFATRWNPRFENSNGDWTPGYYGVEVDFNNGNGIPSLAFLDNPATERDDSVLTNPETYTMGTAWDSGGKDEGSSVTFTLDGQVYTDFAGITEVNFGVRYDVRKADGYGRGARAECADNEDLGFYCNDINGTDPDLAYYSSDFFDDRADFPTDWVIGDGNHLFAEREFYRDAYGFNGYPEGGLKLYDGGVPTVFTLEMFHGMSAEETSASVYTEAKFLYETNIGDIDGSFGLRYSDVKTDTLFRQRCRDPQVSPTADNAMDAETIVNCEGEGLHESSKLLPSAIVRYTFLDDWLMRFAYTETIRRPDFGAFNPLRSYSPDVTNVGYGTAWQGNPDLQPVESVNMDFSLEYYFGEGNALYATIFSRDIEGLIVDTTRSISLEGAEYPFVLAQPNNAGSAKLEGVELGLVYFPENLPGVLDGFGVQASYTALESSQTNPLFNSDGTFAGYEESEMFGISPDSFSFVLAYEKDDFSSRLSYVKREAFMHRYEARLFANPLPVWRRPETSVDFQVSYDVTEALTVTFDATNLTNELYQEYYQYDDIYNFYTGNYSRTFALGLRYSL
>NZ_CP041660.1|WP_143870215.1|828079_829561_-|aldehyde-dehydrogenase-family-protein
MSTIDWSVQADTFKPEVRSLINGQHFDADGELYKKTSPIDLRSLSDIAILNEKEVNIAVNAARKAYNSRCWAGLPLTKRKEILFKFSDLINQHVGTLALLDCLEMGKSIHNLMYDDIPTGAASIRWFAEALDKVYDHCAPARDGALGTITSEPLGVVGAIIPWNYPMIMLAWKIAPALAMGNSVVLKPAEQSTYSAIKVAELALEAGIPPGVFNVVTGDGRTGQALASHMDVDGIFFTGSTEVGKLIMQYAAQSNLKKVALECGGKSPFIVLNSSKQLEYAAQSMARHVYFNQGQICSAASRLIIQAECEAEFLALLKQQINQYQPANPLLTDTRVGAMVSHQQLDKVVNYVEMAVQSGAEVFAGGKAVEPVKNGAFYQPTILTGVRNDMPIAQEEIFGPVVSVIRVKDTAEAVQVANQTKYGLAAAVWTDDFNTAHQVASQLRAGTVHVNAYGEDDATVPFGGMKQSGLGKDKSIWSLQQYAEMKTTWFRYS
>NZ_CP041660.1|WP_143870214.1|827235_827997_+|IS5-family-transposase
MPRTMLTDKAWLKLKLLMEETGRVYNKFEHRNTLEGILYRMRTGIPWRDLPSDFGDWSTVYRRFNLWSKKGILDNIFKVLAYITDSEWLFIDGTIVRAHQHSSGAQSQNDESIGKSRGGLSTKIHLAVDSYGYPVHFELTGGQRNDFIMAEALIRNSPKSDYVVADKGYDSQSIRDFVTEQANSKAVIPRRKDNTKKNKDMDWCLYKYRHLVENAFARIKHFRAISTKYDKLERNYASMVSLAFAIMWLPMHY
>NZ_CP041660.1|WP_143870213.1|825994_826795_-|PAS-domain-containing-protein
MALGHELKNKAIIAAIDKSMGIVEFNMDGTIDDANLNFLNIVGYSLEELKGKHHRVLCEPEYAASEEYKAFWHELNQGQFRSGEYKRISKNGMAVYLQATYNPVFDENGQVIKVFKIAVDVSDKKRLELERAKQEAMLMELSTPVMKIWDKMLLLPIIGVVDSRRVQLIMEISLQNIMEFQAKIMILDIQGVPAVDSAVANHLIKVAKAAKLMGCTCIITGISPAISQALVNLGIELGDIVTQPSLKEGMNAALVSMGMEIGQSSK
>NZ_CP041660.1|WP_143870223.1|844932_846369_-|sugar-porter-family-MFS-transporter
MEGIANNQTNTNYGGENTLLILIVSCIATIGGFLFGFDSGVINGTVEGLQVAFNSDSAGTGFNVASMLLGCAIGAALAGRMADLYGRKTMLIISSIMFIVSAWGSGIATSSEEFIVYRVIGGIAVGAASVMTPAYISEVALARYRGRLTTIQQVAIISGLTGAFLSNYMLAEISGSALNTLWMGYDTWRWMFWVELIPASIFLFALFFIPESPRFLVAKNKTQKARSVLVRLYGQEQGQQKYLEIEKSLDQGNKHQPKISDLIDKTTKKVRPIIWIGIGLAVFQQFVGINVVFYYGAVLWQSVGFSESDSLFINVLSGSLSIGACIVAILLVDKLGRKPLLWFGSLGMAVSLAVAAYAFSTASLDANGALSLSEDMGTLALIFANLYVIFFNASWGPIMWVMLGEMFPNQIRGLGLAIAGFFQWVANFAITMTFPILLGSVGLAFAYGFYALCAVISAYFVYKYVYETKGKELEEMQG
>NZ_CP041660.1|WP_143870224.1|846539_847712_+|substrate-binding-domain-containing-protein
MRKVKKVAVLFNANKGYDRKIIKGISRYTREAAHWHICVEDDLVTRLDNLKSWQGDGIIADFDDPAIAEFVMNKGLPCVAVGSSYRDKTNYPKNIHYVATNNDEIAKIGAEHLFKLGFKQLAFYTGIVNKSCLWAGERAEAFIQHAKTISGRSSSIYTYQPQSQVLDRVENLNNLAEWIATLPKPIAIMAPSDMRAWQIFEACHQIDVSIPEEVAILGVDGDDLILDITGNQLSTVMQGSEHMGYLASSILNQIMSGVPPEEKLHIVDPIGLQVCHSTDVEVIADELVRRALSYIKANAAKGIKVVHVLNHLNVSRANLDKRFRKELNSTVHDFIFEEQLNLVADYLLNSKMTLAQIAESVGYKSPQYMMMVFKSRYDMTPSEFRKKHSS
>NZ_CP041660.1|WP_143870225.1|847801_850387_-|glycoside-hydrolase-family-3-protein
MKKLSFTPRSLVLTAFIASLSACSQQSEDKKATGQEQKTVEHQAENAQVTWPYANKNLKRDEKVEQKVAELLAGMTLEQKVAQMIQPEIGYLTLEQMRKYGFGSYLNGGNTAPYGNKTAAPQEWLKYADEMYEASVDDSVDGSRIPAIWGTDAMHGHSNVSGTTLFPHNIGLGAARNPELMQKIGDATAKEVAVTGIEWSFAPTVAVVRDDRWGRTYESYSEDPEVVASYAGEVVKGIQGEIGVDFLKGYRRIATAKHFVGDGGTLNGIDRGDTIASEDDLRDIHAAGYFTAIEAGVQSVMASFNSWKGVRLHGHKYLLTDVLKGQMGFDGFVVSDWNAHKFVDGCTLEHCAAAINAGVDILMVPEHYEAFYHNTVAQVKSGEIPMSRIDDAVSRFLRAKVRWGLFERGKPSERVLSNELSVFGAKAHRELARQAVRESLVLLKNNDQILPLNPKQNILVAGDAAHNMAKQAGGWSVSWQGTDNTNEDFPGATTIYQGLADAVKQAGGQITLSETGDYKTKPDVAVVVIGEKPYAEWFGDIQYIEYQKETKKDLKLLHKLKAQGIPVVTVFISGRPLWVNKELNASDAFVAAWLPGSEGQGVADVLLRKVSGEINYDFKGKLSFSWPKYDNQLVLNRHDENYDPLFAYGFGLRYQDDVNLAQLDISSRVKSQSDTDLGYALFYRQLAEGLNWTLGDMQDWNVIINGPAGTTAGSDNLTVQGINLAYQEDARRFVWAGDSLAIASLSYTDAKDMSELIDAQTVLEFDLRLDSAPQSAATMGLFCTANSCAAEIDLTEFLVQQKAGHWVHVSVDISCLANAKQVNAVTTPWSLKTEGKLGLAVSNLTLLKGDVEASQLSVCDN
>NZ_CP041660.1|WP_143870226.1|850903_851635_+|NUDIX-domain-containing-protein
MTHTETLMAAEMDKEEQLPENVMPSISVDNLIFAMQNGRLKVLLVKYKEGLAADKWGLIGHWVQYDESLEEAAHRVVTSTTGVVNLYLDQLGAFGKVNRYPGRRIITVVYYSLVRFEEAELQQGDNTHEVAWFDIREVPELIFDHKEILNACLEHLKYKVRHEPIGFSLLPEKFTLLQLQEIYEAILDTKLDKPNFRRKIQKMNLLINCKEKQQAVAHRAATLYRFDINVYEKLKEFGFNFEF
>NZ_CP041660.1|WP_143870227.1|851751_852522_-|ThuA-domain-containing-protein
MKVQNIFKGLLLFALFVSNSIMAKQFKALVFTKTNGWHHESILDGVQAMRRLAERHHFDMEWHEDPSRLNAENLKQFDVIVFLSTTGDIFNAEQKRAIEAFIQSGKGFVGIHSASDTEHNWQWYTKLVGHTFYIHPEIQTARLKVENKFFPGLEHLPEQFLWTDEYYEFSEGLNENLNYILTVDENSYSTDAQWGELSAKGMGDFHPIAWYQQYDGGRSFYTALGHMPAAYQQEIFLNHLYGGVYWAATGKGMLNQ
>NZ_CP041660.1|WP_143870228.1|852711_853647_+|hypothetical-protein
MTKLTQLDCIWRNNRHNAFTDLIEFNGRFYCCFREATNHISPDGIIRILVSDDLKRWQLISSVRHISADLRDPKLIKHHSGKMLLSFYRKRFDKNGQNIANENCISFSLTGYSWSSAKIIGHNNWWMWRIRNDLGIAYNRKQNTVRLYQGDPLRAFHLVNDALFSLKNNAKGYPNESDVLKLPDGRTICILRRDADSFSAQLGISNISNHNWKWYDLGLYLGGPCMLQLENGRILVAARRFQRPRCLTTWLFELDINTKSIKPVLQLPSAGDNSYPAMLAHDNKLHVSYYSQHQENRYSYASAIYLAEVTL
>NZ_CP041660.1|WP_143870229.1|853683_855852_-|glycogen-debranching-protein-GlgX
MSRRNLKVLPGRPYPLGASWDGKGVNFALFSENADYVELCLFDASGKKETHKFKLAEKTDQVWHAYIPQLKPGQLYGYRVHGPYKPKKGLRFNPSKLLIDPYAKSIVGDIRWHDAVFPYQVGDVSNPDLDLIADTQDSAPYMPKCAVTDAQFDWQDDQKPDIPWHKTVIYELHVKGFTQLNPHIPPHLRGTYAGLAQPQVIRYLKSLGVTAVELLPVHYFLNDRHLVEKGLCNYWGYNSINYFTPDMRYAKSGKIEEFKEMIKAFHAAGLEVILDVVYNHTAEGNHLGPMLSFKGIDNPAYYRLVEDNERYYMDYTGTGNTLNMMTPKVLQLVMDSLRYWIEEMHIDGFRFDLASALARELHDVDKLGAFFDIIHQDPVISQVKLIAEPWDIGEGGYQVGNFPVGWTEWNGKYRDTIRSFWKGDEGQIGELAYRLTGSSDLYEHSGRRPYASINFITAHDGFTLHDLVSYNDKHNHDNGENNQDGDNHNLSWNMGSEGPTRSAKINALRQKQKRNFLATLLLSQGVPMITAGDEYCRTQNGNNNAYCQDNKISWFNWRETEEKNALLAFTKMLLALRKAHPIFHQRHFFQGHPVRGSEAKDISWISVDGMEMSEAEWASAETKCIGMHLHGQALKECDEKGKPLRDTDFVILLNAHDCAVEFAMPNSLGEEYTWRLVFDTALTETKRQDKRKKYQAGDVYYLQSRSFVLLSKNRKQSVGRPV
>NZ_CP041660.1|WP_143870230.1|856109_856553_+|zinc-uptake-transcriptional-repressor-Zur
MSNKLLEQARTVCQQNGARFTPVREQVFCFLADAQGSVGAYDLLTQLQQIDTKAKPPTIYRALDFLIEQGFVHKVESQNAYVLCSHFAEHHKAQLLICDNCGYVQEIDNKTIHDALNKAAKQSGFKILKPTIEAHGLCASCIDSNKG
>NZ_CP041660.1|WP_143870231.1|856562_858053_-|glycerol-kinase-GlpK
MIKKWIVAFDQGTTSSRALAFDMEGHVVAKRQIETELDYPHFGRVEQSPEFIWQQQLAVFELLLRDLQAQPHDIAAIGISNQRETTVIWDKKTGQAIYPAISWQDTRTQADCQKIRNSQDASWICDKTGLLPDAYFSASKVKWILDNVEGAREQAQRGELAFGTIDSWLVWNMSGQKTHITDITNASRTMLYDIHRQVWDSDLLAYFDIPAEILPQVVDCSGELAIFEYQNSQIPICGIAGDQQAALFGQTCFHPGMAKNTYGTGCFLLMNTGKKIIRSHNQLLSTVAWRINGDIQYALEGSVFVAGSAVQWMRDALHFIDNAAESEALAQNAEESELVIVPAFSGLGAPYWQGRAKGAVFGMDFSTGQAEFCRAVLQSLAFQTADLIDAMCSDTGEPFVKLNVDGGACANGYLMQYQADILNCPVDVPLEHELTATGAAYLAGLHLKWWDMQTLAQKREIAHLYQPQITPIERQKALEKWQRAVKCTLAWADDRA
>NZ_CP041660.1|WP_143870232.1|858083_859613_-|CYTH-domain-containing-protein
METEIELKFAVASSEEDEGEPILEQLQKLLTPILQNQGYSHKRLTNTYFDTAQQSLRALDAGLRVRTVDGESEQTLKTAGSSVGGLHKRPEYNIPTTANVPDLSLFPAEAWPDHVSIQDLQDALTPLFTTDFTRHKWRVLSQESLIEVVYDSGAVSAQENHTPIHEIEIELVDGDMRELFSLADILVDKLPLRLSNDSKAARGYRLFLNQPMQDKKSLGTVNLSADLDVETAFARAIEHGLAHWQHHEEIYCREGHIRSLKQLLRGIWLVRHTLWLFRDYVPKKASSEIRKELKWLNNEFEWLDGALHIKQLTSKKGNYRKRIGEDERLLNYLEQTFASTLKENATVPLFYSQRYNRVILKLMRWLTERGWRCYSEIDENLLSENIYSVATKLNQQSWVRIQKKMPSKEQFGMQDYIDVERSIGRGLLTGVCVGSLYNESDRMDFRSPWLDIMEGISDLKTLNLFLQCLDSYTEDNQQELQQWAENKITNLVKVMEQSRQSALKMVPYW

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Crispr_ID: NZ_CP041660_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_4

865592-865678

Orphan

Consensus_repeat	Method
AGGCTTTAGCCCGACAATCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_4

>merge|NZ_CP041660|4|865592-865678|CRISPRCasFinder
AGGCTTTAGCCCGACAATCAAGCTTCGAGCTACCAGCTACAAGTTTCGCCAACATTGTAGGTCGCGGCTTTAGCCCGACAATCAAGC

>NZ_CP041660|4|4|865592-865678|CRISPRCasFinder
AGGCTTTAGCCCGACAATCAAGC	TTCGAGCTACCAGCTACAAGTTTCGCCAACATTGTAGGTCG
CGGCTTTAGCCCGACAATCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143870234.1\|860552_863705_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017
NZ_CP041660.1\|WP_143870228.1\|852711_853647_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870239.1\|871371_872415_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP041660.1\|WP_143870229.1\|853683_855852_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP041660.1\|WP_143870233.1\|859824_860430_+\|TIGR04211-family-SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|275056
NZ_CP041660.1\|WP_143870226.1\|850903_851635_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|223979
NZ_CP041660.1\|WP_143870238.1\|870851_871181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870235.1\|866003_867245_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273913
NZ_CP041660.1\|WP_143870240.1\|872572_873415_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870244.1\|878422_879157_-\|redoxin-family-protein	unknown	unknown	gnl\|CDD\|223750
NZ_CP041660.1\|WP_143870225.1\|847801_850387_-\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NZ_CP041660.1\|WP_143870227.1\|851751_852522_-\|ThuA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377643
NZ_CP041660.1\|WP_143870241.1\|874275_874779_-\|nicotinamide-nucleotide-amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_CP041660.1\|WP_143870230.1\|856109_856553_+\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP041660.1\|WP_143870236.1\|867246_868461_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP041660.1\|WP_143870242.1\|874814_877403_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP041660.1\|WP_143870231.1\|856562_858053_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NZ_CP041660.1\|WP_143870237.1\|869829_870420_-\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP041660.1\|WP_143870243.1\|877460_878318_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP041660.1\|WP_143870232.1\|858083_859613_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225569

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143870234.1\|860552_863705_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NZ_CP041660.1\|WP_143870236.1\|867246_868461_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	8.90882e-124
NZ_CP041660.1\|WP_143870239.1\|871371_872415_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP041660.1\|WP_143870229.1\|853683_855852_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP041660.1\|WP_143870233.1\|859824_860430_+\|TIGR04211-family-SH3-domain-containing-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	1.69756e-41
NZ_CP041660.1\|WP_143870226.1\|850903_851635_+\|NUDIX-domain-containing-protein	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.25085e-16
NZ_CP041660.1\|WP_143870235.1\|866003_867245_-\|FAD-binding-protein	gnl\|CDD\|273913	TIGR01988, Ubiquinone_biosynthesis_monooxygenase_COQ6, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	6.47831e-122
NZ_CP041660.1\|WP_143870225.1\|847801_850387_-\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	2.04197e-86
NZ_CP041660.1\|WP_143870227.1\|851751_852522_-\|ThuA-domain-containing-protein	gnl\|CDD\|377643	pfam06283, ThuA, Trehalose utilisation. This family consists of several bacterial ThuA like proteins. ThuA appears to be involved in utilisation of trehalose. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium.	1.15831e-90
NZ_CP041660.1\|WP_143870241.1\|874275_874779_-\|nicotinamide-nucleotide-amidohydrolase-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	2.45664e-65
NZ_CP041660.1\|WP_143870230.1\|856109_856553_+\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	9.82829e-57
NZ_CP041660.1\|WP_143870243.1\|877460_878318_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP041660.1\|WP_143870242.1\|874814_877403_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP041660.1\|WP_143870231.1\|856562_858053_-\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP041660.1\|WP_143870237.1\|869829_870420_-\|UPF0149-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	3.60278e-34
NZ_CP041660.1\|WP_143870244.1\|878422_879157_-\|redoxin-family-protein	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	4.27147e-87
NZ_CP041660.1\|WP_143870232.1\|858083_859613_-\|CYTH-domain-containing-protein	gnl\|CDD\|225569	COG3025, COG3025, Uncharacterized conserved protein [Function unknown].	6.23637e-81

>NZ_CP041660.1|WP_143870234.1|860552_863705_+|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MQLSSAIFSKKIHLTQAEQQLSALHQMMVEYHLIDDQLLSHQLSAIQIKIPPTLQKQVAKQTIELIQKSREHIQQTPWALETFFAHLKLNSAEGKALMSLAEALLRVEDKPSAIALIKDKMARWQPQKSNQNTFEKLSEQLLTISKKLISDQNPTIKRMSSPLIYAAIKKSMHLLAQHFIYAQNMQEAVAKADKKNQLCSFDCLGEAALNSMEAEQYFNAYQQAIMTLAERRKSEKDIPSQTTRHHSISIKLSALHAKFDVLHFEKIKNKLINDVLQLAMLAKKHDIALTIDAEESDRLMITLAVFEAVRRNAHLQGWQQFGLAVQAYSKRALIELLWLNCLAVELDCTIPIRLVKGAYWDSEIKRAQQLGLRNYPVFRCKQDTDAHFLICAHYLLSCGNQKLVPQFASHNINSICQLEALSKQCKPQNKTIEWQHLHGMGTGFYAAFSQLTHWPIRVYAPVGEHKTVLPYLIRRLLENGANQSFVHKLSDQTQAADNLIEPHEFNGVNTTLDHNLDKRLCLPKDIYQTRKNAPGFDWAEQQQLAHFNNLLLSWPDDAFFDPLRTERSPAQSSHADIQKQLQVIAAPYLSKTKDVKQLYSNAIDAQLTWRETSLETRSNCLLRLAEKLIEKQDALLFLLVYEAGKTRSDALNEWREAIDFCFYYAELAKHELHAQKLPSTVGEENYLHYQAKGTFVCISPWNFPLAIFLGQSIAALVSGNTVIAKPAQSCPVIAIYSMALIKQSGINEGVFQLCLAKGSTIGNLLLSHSEYTHLNLNGVCFTGSNKTAKDIEKLLIEHPNKIPLIAETGGLNAMLVDATAQHEQAILDVLQSAFYSAGQRCSAARILLLHHSIYENFVARLQQCMAELIISEPNLAECDIGPVIHAAAKHKINQYIKLQQEQNRVIYQTPLPKHLTTQNYVAPCLIKIDSINEMREEIFGPVLHLVCYDKAENAVEQLNALGYGLTLCIHSRNTTNWHKLATQAKVGNIYINRNQVGAIVGSHPFGGMNLSGTGPKAGGPNYLKAFVNEKTISENSAAIGGTMELLGTRN
>NZ_CP041660.1|WP_143870233.1|859824_860430_+|TIGR04211-family-SH3-domain-containing-protein
MKSRLFALALITLVPNFVFAQQTDKAYISDELTVFVHTGPTRNYRIVGTVVAGSQIEILAKSEDGSFSQIQYEDGKTGWIESQYVSQTASIQQQLKTLKSELAEKTESLSQLENELNTQKSEKMLIEGQLQRHTQSTQDLQNKLESAQKQLAVLQQQDVENQEKVKMDWLIKGGMLSLGSLIIGYILAMMPRRRKRSPDLF
>NZ_CP041660.1|WP_143870232.1|858083_859613_-|CYTH-domain-containing-protein
METEIELKFAVASSEEDEGEPILEQLQKLLTPILQNQGYSHKRLTNTYFDTAQQSLRALDAGLRVRTVDGESEQTLKTAGSSVGGLHKRPEYNIPTTANVPDLSLFPAEAWPDHVSIQDLQDALTPLFTTDFTRHKWRVLSQESLIEVVYDSGAVSAQENHTPIHEIEIELVDGDMRELFSLADILVDKLPLRLSNDSKAARGYRLFLNQPMQDKKSLGTVNLSADLDVETAFARAIEHGLAHWQHHEEIYCREGHIRSLKQLLRGIWLVRHTLWLFRDYVPKKASSEIRKELKWLNNEFEWLDGALHIKQLTSKKGNYRKRIGEDERLLNYLEQTFASTLKENATVPLFYSQRYNRVILKLMRWLTERGWRCYSEIDENLLSENIYSVATKLNQQSWVRIQKKMPSKEQFGMQDYIDVERSIGRGLLTGVCVGSLYNESDRMDFRSPWLDIMEGISDLKTLNLFLQCLDSYTEDNQQELQQWAENKITNLVKVMEQSRQSALKMVPYW
>NZ_CP041660.1|WP_143870231.1|856562_858053_-|glycerol-kinase-GlpK
MIKKWIVAFDQGTTSSRALAFDMEGHVVAKRQIETELDYPHFGRVEQSPEFIWQQQLAVFELLLRDLQAQPHDIAAIGISNQRETTVIWDKKTGQAIYPAISWQDTRTQADCQKIRNSQDASWICDKTGLLPDAYFSASKVKWILDNVEGAREQAQRGELAFGTIDSWLVWNMSGQKTHITDITNASRTMLYDIHRQVWDSDLLAYFDIPAEILPQVVDCSGELAIFEYQNSQIPICGIAGDQQAALFGQTCFHPGMAKNTYGTGCFLLMNTGKKIIRSHNQLLSTVAWRINGDIQYALEGSVFVAGSAVQWMRDALHFIDNAAESEALAQNAEESELVIVPAFSGLGAPYWQGRAKGAVFGMDFSTGQAEFCRAVLQSLAFQTADLIDAMCSDTGEPFVKLNVDGGACANGYLMQYQADILNCPVDVPLEHELTATGAAYLAGLHLKWWDMQTLAQKREIAHLYQPQITPIERQKALEKWQRAVKCTLAWADDRA
>NZ_CP041660.1|WP_143870230.1|856109_856553_+|zinc-uptake-transcriptional-repressor-Zur
MSNKLLEQARTVCQQNGARFTPVREQVFCFLADAQGSVGAYDLLTQLQQIDTKAKPPTIYRALDFLIEQGFVHKVESQNAYVLCSHFAEHHKAQLLICDNCGYVQEIDNKTIHDALNKAAKQSGFKILKPTIEAHGLCASCIDSNKG
>NZ_CP041660.1|WP_143870229.1|853683_855852_-|glycogen-debranching-protein-GlgX
MSRRNLKVLPGRPYPLGASWDGKGVNFALFSENADYVELCLFDASGKKETHKFKLAEKTDQVWHAYIPQLKPGQLYGYRVHGPYKPKKGLRFNPSKLLIDPYAKSIVGDIRWHDAVFPYQVGDVSNPDLDLIADTQDSAPYMPKCAVTDAQFDWQDDQKPDIPWHKTVIYELHVKGFTQLNPHIPPHLRGTYAGLAQPQVIRYLKSLGVTAVELLPVHYFLNDRHLVEKGLCNYWGYNSINYFTPDMRYAKSGKIEEFKEMIKAFHAAGLEVILDVVYNHTAEGNHLGPMLSFKGIDNPAYYRLVEDNERYYMDYTGTGNTLNMMTPKVLQLVMDSLRYWIEEMHIDGFRFDLASALARELHDVDKLGAFFDIIHQDPVISQVKLIAEPWDIGEGGYQVGNFPVGWTEWNGKYRDTIRSFWKGDEGQIGELAYRLTGSSDLYEHSGRRPYASINFITAHDGFTLHDLVSYNDKHNHDNGENNQDGDNHNLSWNMGSEGPTRSAKINALRQKQKRNFLATLLLSQGVPMITAGDEYCRTQNGNNNAYCQDNKISWFNWRETEEKNALLAFTKMLLALRKAHPIFHQRHFFQGHPVRGSEAKDISWISVDGMEMSEAEWASAETKCIGMHLHGQALKECDEKGKPLRDTDFVILLNAHDCAVEFAMPNSLGEEYTWRLVFDTALTETKRQDKRKKYQAGDVYYLQSRSFVLLSKNRKQSVGRPV
>NZ_CP041660.1|WP_143870228.1|852711_853647_+|hypothetical-protein
MTKLTQLDCIWRNNRHNAFTDLIEFNGRFYCCFREATNHISPDGIIRILVSDDLKRWQLISSVRHISADLRDPKLIKHHSGKMLLSFYRKRFDKNGQNIANENCISFSLTGYSWSSAKIIGHNNWWMWRIRNDLGIAYNRKQNTVRLYQGDPLRAFHLVNDALFSLKNNAKGYPNESDVLKLPDGRTICILRRDADSFSAQLGISNISNHNWKWYDLGLYLGGPCMLQLENGRILVAARRFQRPRCLTTWLFELDINTKSIKPVLQLPSAGDNSYPAMLAHDNKLHVSYYSQHQENRYSYASAIYLAEVTL
>NZ_CP041660.1|WP_143870227.1|851751_852522_-|ThuA-domain-containing-protein
MKVQNIFKGLLLFALFVSNSIMAKQFKALVFTKTNGWHHESILDGVQAMRRLAERHHFDMEWHEDPSRLNAENLKQFDVIVFLSTTGDIFNAEQKRAIEAFIQSGKGFVGIHSASDTEHNWQWYTKLVGHTFYIHPEIQTARLKVENKFFPGLEHLPEQFLWTDEYYEFSEGLNENLNYILTVDENSYSTDAQWGELSAKGMGDFHPIAWYQQYDGGRSFYTALGHMPAAYQQEIFLNHLYGGVYWAATGKGMLNQ
>NZ_CP041660.1|WP_143870226.1|850903_851635_+|NUDIX-domain-containing-protein
MTHTETLMAAEMDKEEQLPENVMPSISVDNLIFAMQNGRLKVLLVKYKEGLAADKWGLIGHWVQYDESLEEAAHRVVTSTTGVVNLYLDQLGAFGKVNRYPGRRIITVVYYSLVRFEEAELQQGDNTHEVAWFDIREVPELIFDHKEILNACLEHLKYKVRHEPIGFSLLPEKFTLLQLQEIYEAILDTKLDKPNFRRKIQKMNLLINCKEKQQAVAHRAATLYRFDINVYEKLKEFGFNFEF
>NZ_CP041660.1|WP_143870225.1|847801_850387_-|glycoside-hydrolase-family-3-protein
MKKLSFTPRSLVLTAFIASLSACSQQSEDKKATGQEQKTVEHQAENAQVTWPYANKNLKRDEKVEQKVAELLAGMTLEQKVAQMIQPEIGYLTLEQMRKYGFGSYLNGGNTAPYGNKTAAPQEWLKYADEMYEASVDDSVDGSRIPAIWGTDAMHGHSNVSGTTLFPHNIGLGAARNPELMQKIGDATAKEVAVTGIEWSFAPTVAVVRDDRWGRTYESYSEDPEVVASYAGEVVKGIQGEIGVDFLKGYRRIATAKHFVGDGGTLNGIDRGDTIASEDDLRDIHAAGYFTAIEAGVQSVMASFNSWKGVRLHGHKYLLTDVLKGQMGFDGFVVSDWNAHKFVDGCTLEHCAAAINAGVDILMVPEHYEAFYHNTVAQVKSGEIPMSRIDDAVSRFLRAKVRWGLFERGKPSERVLSNELSVFGAKAHRELARQAVRESLVLLKNNDQILPLNPKQNILVAGDAAHNMAKQAGGWSVSWQGTDNTNEDFPGATTIYQGLADAVKQAGGQITLSETGDYKTKPDVAVVVIGEKPYAEWFGDIQYIEYQKETKKDLKLLHKLKAQGIPVVTVFISGRPLWVNKELNASDAFVAAWLPGSEGQGVADVLLRKVSGEINYDFKGKLSFSWPKYDNQLVLNRHDENYDPLFAYGFGLRYQDDVNLAQLDISSRVKSQSDTDLGYALFYRQLAEGLNWTLGDMQDWNVIINGPAGTTAGSDNLTVQGINLAYQEDARRFVWAGDSLAIASLSYTDAKDMSELIDAQTVLEFDLRLDSAPQSAATMGLFCTANSCAAEIDLTEFLVQQKAGHWVHVSVDISCLANAKQVNAVTTPWSLKTEGKLGLAVSNLTLLKGDVEASQLSVCDN
>NZ_CP041660.1|WP_143870235.1|866003_867245_-|FAD-binding-protein
MIDKFDLVIVGAGIVGLTCALAVARTGKKIAVVAAELAEKRTADNDNASLDALRVSAINQASINAFCQLNVWQRLAGEGHTPFSDMLVWDKNSHGKIEFSAENYNADFLGQIVQNSALITALLLELKSYDNCQLYPHNASQLDAKESEPVLLQLDNNRLLQAEFLVAADGAHSNIRKWLDVSLSFSEYGQTAIVANIQTSEKHQNTARQIFTPSGPLAFLPLANPHQSSIVWSLDFDECQQTLALDKNAFEHKLAATFDGVMGTTELISERISFPLVARYSQQFIKNRCLLIGDAAHTIHPLAGQGANLGIMDALAVAECIGEHWPTEESLQTDKLAAMMRQTMRWRQLDALERIAAMEIFKRSFGSDFLPLKIARAEVMNILNHMTPVKNQMAKIAMGLSGKLPELAKKMPL
>NZ_CP041660.1|WP_143870236.1|867246_868461_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MTDKAQFDIAIIGGGLAGSCMAAALLTALDTINCKIAIVEAQPAKNIEHNSFDSKAIALAYGSVKALAKWGIWSELKKVAYAIDKIEVSEAGSAGYSFIDLDQFHQALGYVVEAAQLGQVLTSFLQQSKYQDKLEYFCPDELQTLQQHQDRVELTLKSGQKLSANLLLACDGANSQVRTLVNIPVHEQIYQQSAVTTNVQVELNTKQNISHRAYERFTAHGPLAMLPIADDKFGLVWCGLQAQSQHLISCSEAEFIRYLHTQFGYKAGRIVKVGKRNMYPLKRLAMQQIYHHRVLFLANASHTVHPIAGQGFNLGIRDISAAADLITHAVQQQQDLWQVQNWQGYIANRNLDIQTILSATDILVRGFSNDYQPLKFARNAGLIGLELSPWIKRKFAQAAMGLGV
>NZ_CP041660.1|WP_143870237.1|869829_870420_-|UPF0149-family-protein
MADSQLPDYDSFDFFLHQNELPCSAAEIHGIICGCLCAGMPYQHAQWRKFISEFALQDAEVDDTVAEKFRQMYQTTYHQLLDPNFSFQVYIPENDDIPLNERAQILLEWLSAFISSFGAVVGEQFSEVDDEVREAYQDLIAISQMDTEMEETEENLIAYEEVAEYIRMTTIMCFGELGDRSGQEGGKDVFQKPTLH
>NZ_CP041660.1|WP_143870238.1|870851_871181_-|hypothetical-protein
MTTHEARRIISFLKEKGIHGACLSDIAKATDMDLLKLKEYMNEYNELFSKVGSTDKYTLNRFGPYQGNAEQMLAFVEKYNHSKLCFDKRIIWMSSMIAVLFAVFATNIS
>NZ_CP041660.1|WP_143870239.1|871371_872415_-|recombinase-RecA
MSDNKQKALSAALGQIERQFGKGSIMKLGDNSALDIESISTGSLSLDIALGIGGLPCGRVVEIFGPESSGKTTLTLQTIAEAQKKGKTCAFVDAEHALDPLYAEKLGVNIDELLVSQPDTGEQALEIADMLVRSGAVDVIIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLTANIKKSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVTGSETRVKVVKNKVAPPFRQADFQIMYGRGISKEGELLDLGVKEGLIDKSGAWYSYQGNKIGQGKANCIKFMLENVEMANEVEAILRERLLLPTKKDAAIAEEKLTEATGE
>NZ_CP041660.1|WP_143870240.1|872572_873415_-|hypothetical-protein
MLGIQSLLCVVLVCTIGLLVALYPNTASINKVNHVPTSDEALVHEFNENYAATAAFNSLVKEKTEQQATDPTEHPANYSQPSNRQQAPETGEETPIDHNAMNIDTFLQQQRYKAMVTKEFVDVPLEEVIASLKDVPEFMLQEVPGLKDHPPTNKDYSATNFPISPVYMQFPTVPRIWYDRFGFLQGNFKDSRALLLTKKLSKWVASACPHLDILHVKCNMTACEIDLSPIKGLDLTGKGWWSPCYIPNYLRSIGYETQLRHALLPRHYRQEIYSFYSEYY
>NZ_CP041660.1|WP_143870241.1|874275_874779_-|nicotinamide-nucleotide-amidohydrolase-family-protein
MYWTEITQAAENCGAILTRKGLTIATAESCTGGGIAYALTEIAGSSAYFTQSWVTYSNLAKQNCLGVAADTLEKHGAVSEQVVAEMAAGVLQNSGADIAVTTSGIAGPGGATDTKPVGLVHFAWQIKGQDVVCEHKVFEGDRAAVRQQAILYALSKIEVLLKNYPLG
>NZ_CP041660.1|WP_143870242.1|874814_877403_+|DNA-mismatch-repair-protein-MutS
MSTDIYSEQSLSQHTPMMQQYLKIKAEYKDILVFYRMGDFYELFFDDAKKAAELIDISLTHRGKTAGQPIPMAGVPYHAVDTYLAKLVALGESVAICEQIGDPATSKGPVERQVVRVLTPATITEESLLDDRRDNILMAIAEHGQNQFGVAILDITSGRFEVAAIQSNESLQSFLQQTHPAELLYPDNFSNLQLIEDIKAIKRRPEWDFEGEAAFRQLCKQFNTQDLNGFGLSAQHPAIGAAGAILQYVKDTQKAAVPHLRGLKLIRLEENLYLDAVSIRNLELNESLSGAKGQSLLSVLDNTATPMASRLLQRWIVHPIRDYQQLKQRQDTIESLLNAGIYTDLRSLLKQVGDIERIISRIALRSARPRDFSRLRNAFAILPEIKERLINSADNTLQTYANAINAFENLFQHLTIAIVENPPVIIRDGGVLAEGYNAELDELRRLSAGAQNILSEIETREREKTGLSTLKVGYNKVHGFFIEISRAQATDAPVEYTRRQTLKNAERFITPELKSLEDKVLTAQSKALALEKQLYEALFDIFEPHVSELQDLADRVARLDVLNNLAERAETYNYCRPHFSENNGLHISAGRHPVVEILSSEPFIANPLELNPQRKMLIITGPNMGGKSTYMRQTALITIMAYIGSFVPAQAAEIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILNNATEHSLILMDEIGRGTSTYDGLSLAWACAENLAHKIKAYTLFATHYFEMTQLSEQIESVANVHLDAVEHGDSITFMHAVQEGAANRSFGLQVAALAGVPKPVIHQARRKLAELENMQDLPVDENTQAPAVTQQVDWLTAQHPLAEALSNCDPDSMTPRQALDFLYLLKQQAE
>NZ_CP041660.1|WP_143870243.1|877460_878318_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MTAQIIDGKNIAQSVRANVKEAVDSRKAAGKRAPGLAVILVGADPASQVYVENKRRACEQVGFISKSYDMPANTTQEALLAKVEQLNNDDEIDGILVQLPLPEGLDSTLVIESIAPEKDVDGFHPYNIGRLVQRIPTLRPCTPYGIMTLIESTGKDPHGCEAVIVGASNIVGRPMSLELLLAGCTTTVTHRFTQDLESHVRRADILVVAVGKPEFIPGDWIKPGAIVIDVGINRMDSGKLVGDVEFAAASEKAAFITPVPGGVGPMTVATLIANTLQACEAREAI
>NZ_CP041660.1|WP_143870244.1|878422_879157_-|redoxin-family-protein
MLNNKEGQKVPSASFVVKTDDGFKTISSESIFDNRTVIVFSLPGAFTPTCSSTHLPRYNQLADVFKKQGVDEIVCLSVNDTFVMNAWAADQEAENITLIPDGNGEFTDKMGMLVDKADLGFGKRSWRYAMLVKNGVIEKMFIEPQVEGDPFEVSDADTMLNYICPDLEVPKSVSLFTKPGCPFCAKAKKLLTEKGFQYEEILLGEGIGLTSLKAVSGRDTVPQVFIDGQHIGGSDDLEAFFAQA

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Crispr_ID: NZ_CP041660_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_5

1187054-1187139

Orphan

Consensus_repeat	Method
TTTGTCGGCCTAAAGGCCCGACCTACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_5

>merge|NZ_CP041660|5|1187054-1187139|CRISPRCasFinder
TTTGTCGGCCTAAAGGCCCGACCTACACGACTTACTTGAAACTTGTAGCTTGCTGCTTTTTGTCGGCCTAAAGGCTCGACCTACAC

>NZ_CP041660|5|5|1187054-1187139|CRISPRCasFinder
TTTGTCGGCCTAAAGGCCCGACCTACAC	GACTTACTTGAAACTTGTAGCTTGCTGCTT
TTTGTCGGCCTAAAGGCTCGACCTACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143870443.1\|1187285_1188215_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP041660.1\|WP_143870450.1\|1197847_1198246_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227639
NZ_CP041660.1\|WP_143870448.1\|1193675_1196198_+\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|319753
NZ_CP041660.1\|WP_143870447.1\|1191572_1193666_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|227334
NZ_CP041660.1\|WP_143870437.1\|1177539_1178349_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225718
NZ_CP041660.1\|WP_143870451.1\|1198298_1198865_+\|PhnA-domain-protein	unknown	unknown	gnl\|CDD\|377140
NZ_CP041660.1\|WP_143870440.1\|1182824_1183154_-\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|181812
NZ_CP041660.1\|WP_143870439.1\|1181371_1182640_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP041660.1\|WP_143870452.1\|1198987_1199947_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872870.1\|1175184_1175325_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870444.1\|1188192_1188984_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NZ_CP041660.1\|WP_143870435.1\|1175649_1176450_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870449.1\|1196272_1197685_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|238535
NZ_CP041660.1\|WP_143872871.1\|1183261_1184530_+\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235314
NZ_CP041660.1\|WP_143870446.1\|1190266_1191454_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225613
NZ_CP041660.1\|WP_143870436.1\|1176464_1176836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870438.1\|1179237_1181196_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368811
NZ_CP041660.1\|WP_143870442.1\|1186050_1186893_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870445.1\|1188980_1190270_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377333
NZ_CP041660.1\|WP_143870441.1\|1184544_1186038_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236826

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143870443.1\|1187285_1188215_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	0
NZ_CP041660.1\|WP_143870450.1\|1197847_1198246_+\|hypothetical-protein	gnl\|CDD\|227639	COG5331, COG5331, Uncharacterized protein conserved in bacteria [Function unknown].	2.05673e-17
NZ_CP041660.1\|WP_143870448.1\|1193675_1196198_+\|chemotaxis-protein-CheR	gnl\|CDD\|319753	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	1.26525e-95
NZ_CP041660.1\|WP_143870437.1\|1177539_1178349_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	3.95845e-29
NZ_CP041660.1\|WP_143870451.1\|1198298_1198865_+\|PhnA-domain-protein	gnl\|CDD\|377140	pfam03831, PhnA, PhnA domain.	1.36277e-29
NZ_CP041660.1\|WP_143870440.1\|1182824_1183154_-\|thioredoxin-TrxA	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	1.48166e-52
NZ_CP041660.1\|WP_143870439.1\|1181371_1182640_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP041660.1\|WP_143870445.1\|1188980_1190270_+\|hypothetical-protein	gnl\|CDD\|377333	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase. This is a family of bacterial putative uroporphyrinogen-III C-methyltransferase proteins. It forms one of the members of a complex of proteins involved in the biogenesis of the inner membrane in E.coli. Uroporphorphyrin-III C-methyltransferase (HemX) is a single spanning inner membrane protein that regulates the activity of NAD(P)H:glutamyl-tRNA reductase (HemA) in the tetrapyrrole biosynthesis pathway.	1.28696e-36
NZ_CP041660.1\|WP_143870444.1\|1188192_1188984_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	3.78758e-38
NZ_CP041660.1\|WP_143870441.1\|1184544_1186038_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	gnl\|CDD\|236826	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase.	0
NZ_CP041660.1\|WP_143870449.1\|1196272_1197685_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	6.67137e-78
NZ_CP041660.1\|WP_143872871.1\|1183261_1184530_+\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235314	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.	0
NZ_CP041660.1\|WP_143870446.1\|1190266_1191454_+\|hypothetical-protein	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	6.23508e-49
NZ_CP041660.1\|WP_143870447.1\|1191572_1193666_+\|diguanylate-cyclase	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	5.02977e-52
NZ_CP041660.1\|WP_143870438.1\|1179237_1181196_-\|hypothetical-protein	gnl\|CDD\|368811	pfam06241, Castor_Poll_mid, Castor and Pollux, part of voltage-gated ion channel. This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.	3.32005e-07

>NZ_CP041660.1|WP_143870442.1|1186050_1186893_-|hypothetical-protein
MKKKWVVLLFCLPLVTGCSLTFLYNNADWVASWYLDDYVDLTHEQSEIFEEKFDSWHQWHRTEQLPLYKTQVDALLAQIEMGIKPDVFKQHIDQVETHWRNLLFKITPELSEMLLMLSDRQKRELIDNLREKNTERREEWLAMDGTERYEQAWERRVEQNENWFGTLNKKQLKVLKMQGSEYENTFLMWLDYRDNWINAFENALFVKEKNIQREGLQKVLATPYLWRGDALQQALDVNRQKYSEHFVEMLDLLTTKQHKFFVAKLTDYQQDFLALHQKYD
>NZ_CP041660.1|WP_143870441.1|1184544_1186038_+|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase
MAEQNYPIYAAIDLGSNSFHMLIVRSVEGSVQTIGKIKRKVRLASGLQENGALEEAAIARGLDCLSLFAERLQDIPAKNVRIVGTAALRLATNSADFLERAESILNHRVDIISGEEEARLIYIGVAHTSGTSKTKLVIDIGGASTEMVAGERFTPKVVNSLNMGCVTYRKKFFKDDIINLRNFEMSINAAQVEMSGKMQPYMAFGWQACLGASGTPQAIQEILIAQGDSEMITLDKLLKLKETAIACGHIDNLNIVGLAEERRPVFVSGLAILIAIFQALHISYMVVAGGALREGIIYGMIPCLQQKDIRQRTLSSFIERYRLDKEHAYRVRDTALKLFDQLHVHWALEQHDSRAVLEAAAVLHEVGLTVDFKFAAKHAAYILSNTAIPGFSLAQRKLLIAIVHNYREDIDITQVKAQTMTSPILAGQLTRILRLSVILTMRRKDEVLPTVKLSSTGLDDLNLIFEANWLKSHPLMESELTQEQEYQRKAGWKFTFS
>NZ_CP041660.1|WP_143872871.1|1183261_1184530_+|ATP-dependent-RNA-helicase-RhlB
MTIQTHLSEVEFASLPMHAKVQQALKEANYKHCTPIQAQSLPIALKGGDVAGQAQTGTGKTMAFLVAVFNQLLSREAPQDRPASHIRAIILAPTRELVVQIHKDAALLAKHTGLKLALIYGGDGYQDQNEQLAAGADIVIGTTGRIIDYYKQGLINLSQIESVVLDEADRMFDLGFIKDIRFLFRRMPPASERLSMLYSATLSMRVQELAYEHMSSPTHVHIAPEQMTNTRITEELFYPANEDKMLLLLTLMEEEWPDKAIVFSNTKHGCEAVYQWLKADKHRVGLLTGDVPQKKRLSILQKFTDGQLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHAISFACEKYVYNLPAIEEYIGHSIAVTKYDSTQLLDDVKPPRPQAKRRMQHGRTENNRNYNKGRRN
>NZ_CP041660.1|WP_143870440.1|1182824_1183154_-|thioredoxin-TrxA
MSSDAILTLSDTSFESDVINAEKPVLVDFWAEWCGPCKMIAPILDEVATEYEGKVTVGKLNIDQNNASPAKYGVRGIPTLLLFKSGSVAATKVGALSKTQLKQWLDENL
>NZ_CP041660.1|WP_143870439.1|1181371_1182640_-|transcription-termination-factor-Rho
MNLTELKNKPINELVKLAESMGLDNMARLRKQDIIFAILKKHAKSGEDIFGDGVLEILQDGFGFLRSADSSFLAGPDDIYVSPSQIRRFNLRTGDSLAGKIRPPKEGERYFALLKINEVNFDKPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVLDLASPIGKGQRALVVAPPKAGKTMLLQNIAQSISWNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNSEIHLNRKIAEKRVFPAIDINRSGTRREELLTTTDELQKMWILRKIVHDMSEIDAMEFLIDKLGMTKTNDEFFDAMKRQKGS
>NZ_CP041660.1|WP_143870438.1|1179237_1181196_-|hypothetical-protein
MSLKFTYLQPIDRIKYFVERQLVKGAGYQLFVIVACIALVSLIGGMLLTPISTQEQSLADDIWWAFLRLTDPGYLGDDEGAWRRIVSTILTICGYVLFMGTLVAIMTRWLIAFMEKLEQGLTPVSVKDHIVLLGMSSRTVPIIRELLGVEANLNVHKKHYNGKMPTIILLAEEVNAIVHQQLLAEIALPHKLARQVILRSGKALQSEALHRVACLDASSVILTNQYQRTDSLVTTDVETIKSLLTINVLAQNTGHFPRLVVELDDVRHTKLAKKSYQGQANVVVTDETISRLMAQCAVAPNLLKVYTHLLNASSKGRFFLKEADEHQGKTVAEAKLFHSSAILVGYIDPQNQQFYLALGEHAKHKIVADDILVFIASNYNQLQSRQSPVRQLAYAKSEKGKTVATQHNNGRKKLLLLGWNRRVPNIIHELDDYQNESFDVTLVSTFSAQIRQQEIAKLGRFSNRINISLQEADYMMEAEIRQFKPEEQDIILLVYSDRLDSADEADARVLVGAMVLDEILDNYSKKPHVLIELSDPANENFLDQASTDTFITPLLMSHLLSQIALMPENQILFDTLTKADGIQIYLRSLKDYSDKEMLKSIDVAQLVEAHGEIFLGVFNGNSAEHPVQLNLPPEQRISTLANDLLIVIGNGL
>NZ_CP041660.1|WP_143870437.1|1177539_1178349_-|winged-helix-turn-helix-transcriptional-regulator
MPQLRKQNRIKTITGTLAIEGNTLTEEQITAIVEGKPVLGSVRELAEVKGAIAANDALPSFEPHAIDDLLTAHGLMADLARWLKDTKDPPLIASSVFHYEFEFIHPFADGNGRLGRLWQTLILSKWHPLFLSLPLESVIKEHQQDYYQALEQADQQADSTPFIHFMLSVINQTLAQNAPVNAPVNAPVNAPLNAPVKSRLDAKDKISELKTPDAILSLLAQTPDLTRQQLADIIGKDIRTIGRAITKLQREGKLARIGADKSGYWKVQP
>NZ_CP041660.1|WP_143870436.1|1176464_1176836_-|hypothetical-protein
MQDNAPHIGIFWLYKSTVVAKKTQLSQLLADHLAIYDSDFSHMTEWEDKLVFLPMFPELLGSEYQEIARGRIVYIEPKGVFRIYADKSIMQNANYRALVIDSFGLTGFNCLWLADPHYRVFKC
>NZ_CP041660.1|WP_143870435.1|1175649_1176450_-|hypothetical-protein
MNIFDVVNAKIIEFVSKSENENLQRGTGSYSVPFRGSLFNTINTVKLLTELQHQRVDVMWLGSNPNVPESLQTILDPSAPSHFAGFLEQQSNGNFSEAYADKDGDLQPCWNPINKPNYKWQFYSEILNKKFGEHTTLMANIVPWGSQNFNLFTSELRKLDAELLARALTFSCELNNLIVEYFKPKVILLPKSFITTAPKNWYLHSSKLTHIQHYVIKGKVAFKFSVGLADVGETKIKVVTAPHPSYIPRIGQAYREIAQQALFDVL
>NZ_CP041660.1|WP_143872870.1|1175184_1175325_+|hypothetical-protein
MGELCKRPNHCIGKRTIYRRSRNSDLVYQKPKQRCERLNSQRKGRH
>NZ_CP041660.1|WP_143870443.1|1187285_1188215_+|hydroxymethylbilane-synthase
MSKHLRIATRDSLLALWQAEYVQQKLQQAHPDLKVTLVKIKTKGDKILDTPLAKIGGKGLFVKELEVAMLSGDADIAVHSMKDVPMEFPEGLALSVICEREDPTDAFVSNHHATIDDLPKGAVVGTSSLRRQCQLLKHRPDLQVKWLRGNVQTRLRKLDEGQYDAIVLASAGLIRLKLEDRIRYRIPTEVMLPAVGQGAVGIECRAGDQATHNILSVLKDQDTTIRLTAERAFNTKLNGGCQVPIAGFAEFKGNELFFRGLVASVDGKKVFYTEKSGMIEEAQQIGEAAAQELLAAGAKTVLDEVYGQQ
>NZ_CP041660.1|WP_143870444.1|1188192_1188984_+|uroporphyrinogen-III-synthase
MRFMANNKTTVFHSRVADSAQELNHLLRAEHFLPLHCPIFELQKGSDLNLIDNDRFNSILLGSSSPLDTILIFTSQYAVEFLQHAIQHKKLLNPLLEMQCVAVGQTTAKKLVQAGFKNVLTPTAPTSEGILQLPVIQTSKQAILFKGEQGRDKLANAFRLANKPLTTYNVYKRQWVDLSETQLQQINRCDVFIFTSGEIAQHLYRLVVDKISPDFVHKLVLVPSERVAKQLTEYGFDQVINIGSASNHNIIAHLRKFKGSVLT
>NZ_CP041660.1|WP_143870445.1|1188980_1190270_+|hypothetical-protein
MTDKTDNTGKQTPESSVERAEQAQAQDKSAATEKKAEDAQNTEKAGQTDKTERTTDKEGATEKVVVEKNAKTPSQTTRSETVVVKEKGSKFSPLAFIAFLFALAALGACGWLYWQLEMQKNTFAKQQQSFTTQKSQLKSQLKQQSNELKQQQQAEQQNFSQQLNTQLNNQLSQFANEVEQKLQTQQQKMDKSIELINQSGEKARQQMLLTDIKNLINIASHKLFLQQDKQAALTALKMVQNRLAALSDSKFLAIKQSIAEDIGTLNALPSVNNQEIYYQLSELMGSLKKLPLNQAVMPTKTNSAEQTKPSSEISWDNLKLVWQDFLSLFRVQKRDTEIEPLLTPAQVQNIELNLLSKLNQAQWAALNAQSAVYQTALKQTAQWVSQYYDPTSPKVTLVIDRLILLANKQLVADYSQVTLNTPTLMDNTL
>NZ_CP041660.1|WP_143870446.1|1190266_1191454_+|hypothetical-protein
MIRILVLFILACALLAGGAVLVEEKGYVLIHVAGWSWEASFIGFLFIILVAYLVFKLIEKVLISLFSVRRSFSNWRKNRKQSTSLHALQQSIEALLSGQWQKAEQLSLKHAKYSPIASSHYLIAAEAAKNCGQHEESSLYLLRAQENGDESHKQLAMAQSLQQEGKTDKAIELTEKLYRENKKNTQTLLLLARLYETSEDFEKLRELLPDVKRYAEITDSELQLLALKAWQPIFTQAALDNSERTIEQAYKQLTKLVGTSGNARQNYFSALLAAGCHSTVEKKLIKLFDEDTHKNQTTINILKTLELNQPLKLIAWLEKKLKSNPQDDWLKIALAITAAKNRDWQLAQQAMESAIRQLPSAENYAILGDIYQENQQSEKAKQCYRKGLSLLLDAA
>NZ_CP041660.1|WP_143870447.1|1191572_1193666_+|diguanylate-cyclase
MNSVQQKRIIKMFNLSIKKSILDEHSKRLALKKNILSTNNSTIQYGVREELASALLSFVELQGGFYVLYDTNGVAILSSANLPPELSSVVNKMLNLNTQKKTINPVLRRHKSTSSQGFNISVDEVYYQDEMYLLLIGAPEKSLVVELYNAFPIGVIKTDAQLSLKYCNTHTYTLLGLGQDELQGNNWLNAFDDVSRERIFEFLSNEKNFEEKLRLITQVITPLGRTKVISVAIDQQYDLLGHLVSYYIMLQDITQEYKESSYLKHLATHDSLTQLHNRVSLLQEIETLYNTDKISSSALLFIDLDKFKYINDNLGHHIGDELLKIVGKRLLNTTRSSDIVARIGGDEFVVILTNVTNDIIALDRAQAIVEKLNRPCVIESHEINVHSSIGLTMGHIILTRHPKEKNADKIAELWLSASDSAMYQAKSNKVNDITLYTDELSNQLTSLLATQNAINDLETKKAFTSFFQPIYQGDKIYALEALTRFDSDALSDIESVFEQIREHKRGQTILYRIIQRNLLGYSLLMNENITDIPCLNINIDLHLMTNGNFANKFSNMLIDYNIPPNKVFIEITERDTSAHIDDNIYKNIAALKNIDVRMSLDDFGRGYSSIERLIKLGLDQVKIDKVFLSGDLTHQQKQSALMAAVNLGKALDLQLLLEGIENEHDQALAEQCGVPLRQGYFYNKPMPVEKIKKLLGK
>NZ_CP041660.1|WP_143870448.1|1193675_1196198_+|chemotaxis-protein-CheR
MSKNTKKPSHIVGIGASAGGLEALQALFLELPTDLDIAYVVIQHLSSDFKSMMAELLTKYTEMPIHQAVEGEEIQPNTVTLMPPGKLIRVVECKIYLSDLPPDNRVNLPINEFFRSLAEDLQNHAIGVILSGTGSDGSRGAQALKEVGAMVIAQAPDEAKFDGMPLNAINTGSVDFISNIDEMADQIRNFINHPLLSNHGKHFRYHLSENEDVLNQILDLVHEQTELDFKAYKESTVARRIEHRMSINNIKSLPEYYDYLIKNSKEIELIKQDLLIGVTQFFRDQEVWDFVYKKVIIPIVLSKTSEDPIRIWCACCSTGEEAFTIAMLFRAAMEELNVERAVKVFASDIDQSAVGFAANGVYPSSIATEIPSALFSPNFNQTADGNYQVSKELRSMVVFATHNLIQDPPFSNMDMVSCRNALIYLQNPAQQKAMAFFHFAIRLNGFLLLGSAETTGNFDSYFDAFDGRYRVYKKTKDIRIPVRAIANNGLKSKTYQPKALPQYIARNVKSLDSSRKVKIGYDALFEEFAPPTLIFNKKLALVYTYGDTSLFTKKIQAGLVTNDVADILEPDIVSHAISAAHQVLRENCSVLLQDTFKLPNEKGEQTPWSIKCFSFPDRDNDDEKLVALSFLSKETYVARRADAEYSLEQQVKNRVSELDYALIECQKLYRETLEDLDTTREELQSSNEELMAANEELQSTNEELQSVNEELYTVNSEYQQKILELTSINNDLENLLKATRLAVLFLDKDLRIRRFTDAVKDYLNVIEFDIDRKIFDLTFKFDFPGLNELISKVNETGKPNTKIYDITSDRHIEISISPYQLETYNNGVMVSIKERVMQSD
>NZ_CP041660.1|WP_143870449.1|1196272_1197685_-|DASS-family-sodium-coupled-anion-symporter
MKTETQSNFLMVLLAPLMATVTALLCAFVWQQPYIICATAAITMLTAVWWVTEALPIPVTSLIPFILFPMFGVLDHKVAASALGSHVILLLMGAFMLSKAMEKSGVHQRLALYLINLFGGNQPKKILFGLMISAAFLSMWISNTATTLMLLPMVLAIASNANDRRFGVVLLLGIAYAASVGGIGTLIGTPPNVIFAAVYQTHFAQEIGFLEWMKTSIPVVILAIPMMALWLGRGLNKSVEVQLPCVGQWRLSEKRVLYVFSLIVVLWIFRSEPFGGWSALLGNRTIGDSSIALFGVLLMFIVPSHNEVIEGQVQRKYLLDWQTATDIPWGMLLLFAGGICIAKAFQASGLSQLLGQSLTALTHWPTYLMILVVCLFVTFLTEITSNTATTTLLMPVLAAAGVAAGIDPKLLMIPAAMSASCAFMLPVATAPNAIVYGTDKFAIKTMVKEGVVLNMILAVTISGYVYYAIK
>NZ_CP041660.1|WP_143870450.1|1197847_1198246_+|hypothetical-protein
MIYAMFAMVMLTFLVGIITFKTRVNSVKKGEVSARYYKLMQGDEIPEAVIKTSRNFTNQFEIPVLFYVAASLFAALQIESDIALACAWIFVACRCAHAFIHLTYNHLLHRIIAFWAANFAVLSMWISLVSEI
>NZ_CP041660.1|WP_143870451.1|1198298_1198865_+|PhnA-domain-protein
MSIAEKVQQRSNGQCELCLAKENLALYQVTPDQGRAEDNHAMLCQTCLTQYTGEETTISAHWACLNDSMWSQVPAVQVLAWRMLKKLSAEAWAQDLLDMLYLDEETQAWAEAEIPQNDLEPTLDNNGTRLKAGDTVTLVKDLPVKGAGFTAKRGTVVRGISLCENPLHIEGKVNGVRVVLIADYLKKA
>NZ_CP041660.1|WP_143870452.1|1198987_1199947_+|hypothetical-protein
MKKGIIITAGAVCIVAGCVTFAQIKANEYAKTQLDSYLAKLKTQGVISQANYQTIDVSLFGSVELTNLALHSADLPESITLQKVTISDFDVQHDIPHSMKVRLEGVKLPINLQDEKFNHSGVFAEYVSNLGYTDQLPLTAEVQYQYDAQNAHTYTSSLDIGLTQLGNYHISATTKNIPLNVLMELTANKTPNQAQIASVLQTAALPNLAISFKDEGAVSTYINISAKETGMAQQKVKARVNEVLAMQADMLLPPQLDAFKVQLLAEIESFMDGNKTLKVSINPEHQGEVNKLQPEVIAALMKQDFANIIKLLKLEIKAS

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Crispr_ID: NZ_CP041660_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_6

1210075-1210183

Orphan

Consensus_repeat	Method
AAATTGTCGGCCTAAAGGCGCGACCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_6

>merge|NZ_CP041660|6|1210075-1210183|CRISPRCasFinder
AAATTGTCGGCCTAAAGGCGCGACCTACATAAATCTTGTAACTTTCCACTCGCAGCTCGAAGCTCGAAGCTCATCGCTTCAAATCGTCGGCCTAAAGGCGCGACCTACA

>NZ_CP041660|6|6|1210075-1210183|CRISPRCasFinder
AAATTGTCGGCCTAAAGGCGCGACCTACA	TAAATCTTGTAACTTTCCACTCGCAGCTCGAAGCTCGAAGCTCATCGCTTC
AAATCGTCGGCCTAAAGGCGCGACCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143870462.1\|1210376_1210742_+\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238607
NZ_CP041660.1\|WP_143870468.1\|1218780_1220328_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP041660.1\|WP_143870461.1\|1208668_1210018_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP041660.1\|WP_143870455.1\|1202134_1202968_+\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NZ_CP041660.1\|WP_143870452.1\|1198987_1199947_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870466.1\|1216448_1217534_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP041660.1\|WP_143870467.1\|1217602_1218772_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP041660.1\|WP_143870458.1\|1205082_1206285_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP041660.1\|WP_143870464.1\|1211655_1212987_+\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
NZ_CP041660.1\|WP_143870453.1\|1199926_1200793_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176159
NZ_CP041660.1\|WP_143870459.1\|1206450_1207062_-\|response-regulator	unknown	unknown	gnl\|CDD\|381099
NZ_CP041660.1\|WP_143870469.1\|1220515_1220944_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP041660.1\|WP_143870470.1\|1220950_1221205_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NZ_CP041660.1\|WP_143870465.1\|1213056_1213971_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870456.1\|1203142_1204420_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176503
NZ_CP041660.1\|WP_143870463.1\|1211027_1211558_-\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|235377
NZ_CP041660.1\|WP_143870457.1\|1204485_1205070_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143870454.1\|1201001_1202132_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP041660.1\|WP_143870471.1\|1221226_1221742_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP041660.1\|WP_143870460.1\|1207058_1208360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236848

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143870462.1\|1210376_1210742_+\|HIT-domain-containing-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.32278e-58
NZ_CP041660.1\|WP_143870468.1\|1218780_1220328_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP041660.1\|WP_143870471.1\|1221226_1221742_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	1.24559e-77
NZ_CP041660.1\|WP_143870455.1\|1202134_1202968_+\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	1.70492e-138
NZ_CP041660.1\|WP_143870466.1\|1216448_1217534_-\|DUF1624-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	9.6951e-64
NZ_CP041660.1\|WP_143870467.1\|1217602_1218772_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.40218e-82
NZ_CP041660.1\|WP_143870458.1\|1205082_1206285_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	8.91167e-18
NZ_CP041660.1\|WP_143870464.1\|1211655_1212987_+\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	0
NZ_CP041660.1\|WP_143870453.1\|1199926_1200793_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.47335e-98
NZ_CP041660.1\|WP_143870459.1\|1206450_1207062_-\|response-regulator	gnl\|CDD\|381099	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC. This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.61878e-44
NZ_CP041660.1\|WP_143870469.1\|1220515_1220944_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.009e-27
NZ_CP041660.1\|WP_143870470.1\|1220950_1221205_+\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.47841e-43
NZ_CP041660.1\|WP_143870456.1\|1203142_1204420_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176503	cd08560, GDPD_EcGlpQ_like_1, Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	0
NZ_CP041660.1\|WP_143870463.1\|1211027_1211558_-\|ribosome-associated-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	4.7487e-62
NZ_CP041660.1\|WP_143870461.1\|1208668_1210018_-\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP041660.1\|WP_143870454.1\|1201001_1202132_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP041660.1\|WP_143870460.1\|1207058_1208360_-\|hypothetical-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	4.88237e-42

>NZ_CP041660.1|WP_143870461.1|1208668_1210018_-|glutathione-disulfide-reductase
MTQHFDFISIGGGSGGIASANRAAKLGKKAAVIEAKYVGGTCVNVGCVPKKAMWYAGQIADAMKYAADYGFDIEQKGLNWEKLVSNRQAYIERIHASYNRGFANNGVTLINGFAKFKDAHTVEVNGTLYTADHIVIATGGRPSIPNISGAELGITSDGFFELYEQPKSVAVIGAGYIAVELAGVMHALGSETHLVVRKDKPLRDFDDLMSDTLVDVMKEEGPKLHTHSTPKAIEKCSSGELIVQFENGQSLPPVECVIWAIGRAPAVDNINLEAAGVKLDEKGFIATDEYQNTNVQDIYAVGDNTGRIALTPVAVAAGRRLCERLFNGKSDLKLDYNNVATVVFSHPPIGTVGLTEIQAKEAFGEGAVKVYTSQFTALYQAMTQHRQPTKMKLVCVGPEEKIVGIHSIGFGSDELLQGFAVALKMGATKADFDNTVAIHPTSAEEFVTM
>NZ_CP041660.1|WP_143870460.1|1207058_1208360_-|hypothetical-protein
MIKFRLSQAVLIFLALSVCAVLINIFVVISSQNAANKNEEWLIHTYEVLDLTQLLLGSVKNGETGQRGFLLTSDEAYLEPYYQGYQQVFDTLQTLTQKTADNPRQQQRLAQLSELIREKFAELKLTIQLSEQGQSERALQLVNSHQGKQLMEKIRRQINAFEAEERQLLEKRRHAFEKSKKLSRNVILFADAILFSIVIISILVMKRRVIDPVVSLTRQAQLNTDRGQRNFRVQDSGTEVDMLAKTLQNMSDDLYRSIIELQEAKAKADSSAKIKSEFLANMSHEIRTPLNGIYGTLQLLSDEVDSEKGKDILDKAKFSAISLITIVNDTLDFSKMEAGKLEISNTEFSLSELMEYLLSDMGMQAHKKGLKITISNNVQHNYWIGDPVRIKQILINILSNAIKFTRDGSIEVNLTQDANRGGYSLRSKIQASE
>NZ_CP041660.1|WP_143870459.1|1206450_1207062_-|response-regulator
MNQEQLSRLFERFEQADQSTSRKYGGTGLGMSITKFLVGLMHGTIEVSSEEGKGTRCIISLPLKKAENLVQKDVFADIGHIDFNDKRILIAEDNEINRMIIEEMLIATGASLVLVENGLIALEKFKAELFDLVLMDIQMPEMDGVEACKKIKQYKAKVPVIALTANVMKEDRLLYEQTGFDNFLAKPIDRNALLRLLSNYLNN
>NZ_CP041660.1|WP_143870458.1|1205082_1206285_-|trypsin-like-peptidase-domain-containing-protein
MKRKISLLCVFMCTLLMITSCANTQKTKGKRYKINANVAVPNSTEIAVYIPQAFQDMEYWVAGSWHKPGLAMREALNKSFGQYFTSAKWFDRKSTEQARLFLDLNPDWDFEGGKVIFNTKYSLLDAAGNEIASGSYKESSGINYHQSEAGYYNAAYKAFQRLAVNILNSQQPSKEKFVNLLAMNKLDLNKLIDKEKPTSSGTGFFVNAEGDVVTANHVVDDCLIVKVKSENGLSDAHIENSSRLLDVATLRTAQATEHYVSFRKGHEIKLGEKITTVSYPLKGLLASSPNMTFGNVTSHKALSGSLGLFQFSAPIQPGSSGGAIVSDGSELLGVVTSTLNIKELAKEGVIPQNVNFALEAKYLKKFFDKYKVNYTELETPAVGNSSEKALNASAQIACYQ
>NZ_CP041660.1|WP_143870457.1|1204485_1205070_-|hypothetical-protein
MNIIYKLTSTVILSLGLSCNLFANEDAVDKMSESEVSAKLPEIRFISNLKDEDSFEPLKQQAILANLSQSAPGCPLSLVVSVETPSTSGGDAAAFTSIMLSASTLGVVPVVSNNDVIIRYQIKVNGETLSEYSYSNNFTDTDFFWAMDFGLSDEAKQWVVSTTETFAQDLSTDEKLAELLNEYAYYFSDLIKES
>NZ_CP041660.1|WP_143870456.1|1203142_1204420_+|glycerophosphodiester-phosphodiesterase
MKTFKQKINLLSAFCLVFGLVACTLEINDDDPQDEPVATNKVMAQVGVRPLFLVDQMQDGTLKNKLQQCKSQTFYRTDWSIGHRGAAMQFPEHTQESYQAAIDSGAGIVECDVTFTQDKELVCRHSQCDLHTTTNILAIPELAAKCSTPFTPADPENGISASAQCCTSDITLAEFRTLCGKMDGANPNALTVDEYMDGTANWRTDAHSTCGTLMTHKESISLFKEAGVKMTPELKSPSVQMPFDGMTQEEYAQKMIDEYVEAGIPASDVYPQSFNLADVQYWIANNSEFGQQAVYLDDRYNDSSFDPNDTSSLTPSMQLLKNQGVEIIAPPLWVLVTLDNDNNIVPSEYAKAAKSAGLKIITWTLERSGLLTQGGGWYYQSITDVTDNEGVAFELLDVLAKDVGVIGVFSDWPATVTYYANCMDI
>NZ_CP041660.1|WP_143870455.1|1202134_1202968_+|S-formylglutathione-hydrolase
MLQLISENKSFGGWHKKFSHHSNKTNCTMQFAIYLPPQASENHKVPVLYWLSGLTCTDENFMQKAGAQKMAAQLGIAIVAPDTSPRGEQVANDDAYDLGQGAGFYLNATQAPWKEHYQMYDYIVHELPALIEQNFPVNQKRAISGHSMGGHGALTIALKNPQNYVSVSAFSPICNPVNCPWGEKAFSAYLGEDKSSWLQYDSCELLHGATAILPMRIEQGTQDNFLSDQLKPESLLNIAKNKPFDVQLNMQEGYDHSYYFIASFIDEHLVFHAQYLN
>NZ_CP041660.1|WP_143870454.1|1201001_1202132_+|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MSEQFIKSRAAVAWKAGEPLKIEEIDVMLPKKGEVLVKIKSTGVCHTDAYTLSGDDPEGNFPCILGHEGGGIVEQVGEGVTSVKVGDHVIPLYTPECGECKFCLSGKTNLCQKIRSTQGKGLMPDGTTRFYKDGQPIFHYMGTSTFSEYTVLPEISLAKVNPEAPLEEVCLLGCGVTTGMGAVKNTAKVEEGATVAVFGLGGIGLAVIIGAVKAKASKIIAVDINPDKFELAKKLGATDCINPKDYDKAIQEVIVEQTDGGVDYSFECIGNVEVMRSALECCHKGWGESVIIGVAGSGQEISTRPFQLVTGRVWRGSAFGGVKGRSELPGYVERYLKGEFKLSDFITHNMPLQEINQAFDLLHQGKSIRTVIHFEE
>NZ_CP041660.1|WP_143870453.1|1199926_1200793_-|LysR-family-transcriptional-regulator
MLWHGVSEFVAVVDCGSFIGAAEKLGVSNAQVSRQVSALEERLNIKLLYRTTRKINVTQEGQVFYQHCRHVLDGLEEAERAVTNLQSKPKGKIKLTAPVTYGEQVILPKVTDFILQYPDIQVYAHLTNQNVNLVDEGYDLAVRLGKLADSSLMARKLASRINYICASADYIRANGQPQTISMLDKHACLLGSRDHWVLSDGGKEKIIKVSGKIRYNSGHALLDAALKGLGLVQLPDYYVAPYLASGDLVSVLDEYIVKGEGIWAIYPQNRHLSPKIRLLVDYLAGFDL
>NZ_CP041660.1|WP_143870452.1|1198987_1199947_+|hypothetical-protein
MKKGIIITAGAVCIVAGCVTFAQIKANEYAKTQLDSYLAKLKTQGVISQANYQTIDVSLFGSVELTNLALHSADLPESITLQKVTISDFDVQHDIPHSMKVRLEGVKLPINLQDEKFNHSGVFAEYVSNLGYTDQLPLTAEVQYQYDAQNAHTYTSSLDIGLTQLGNYHISATTKNIPLNVLMELTANKTPNQAQIASVLQTAALPNLAISFKDEGAVSTYINISAKETGMAQQKVKARVNEVLAMQADMLLPPQLDAFKVQLLAEIESFMDGNKTLKVSINPEHQGEVNKLQPEVIAALMKQDFANIIKLLKLEIKAS
>NZ_CP041660.1|WP_143870462.1|1210376_1210742_+|HIT-domain-containing-protein
MSQETIFTKIINREIPADIIYEDELTLAFKDINPQAPLHCLIIPKQPIATINDITEDKRELVGHLYVVAAKIAKQQGVADDGYRVVMNCNEHGGQSVYHIHLHMLAGKPLGWPPYTDKAKV
>NZ_CP041660.1|WP_143870463.1|1211027_1211558_-|ribosome-associated-protein
MNDEWQNPSDPDEEIIYVSKSELKRDSQESQHLADKILNLSASNLAKIPLDDDVQAAVNVALKIKNKHGAYRRQVNFVGKLLRMRDVEDIQLALSKIENQHLVANQHFHKLEKLRDRIINEGDEAINRLLELHPDMERSKLRQLARQAKKEQTQNKAPKAARQIFQYLKEFIPETK
>NZ_CP041660.1|WP_143870464.1|1211655_1212987_+|metalloprotease-PmbA
MLQEMNQVKQAVADAVALAKKLGASACEVSISKQQGISVGCRMQELETVEYDYGGALGIAVWMGKQKGSASTSDLSPEALKQTVEAACNIAKYTSEDPFTGMADPDLMVNAEQIPDLDLYHPSDISTEDAIAMTLACEKAGLEKSEKINNSDGASFSSHQGFKVYGNSTGLIAAYPSSRHSLSCSLIASDTDDMQRDYAYTVSRVMSHLEAPEIVGTRAAKDVLARLNARKINTAKVPVLFNSEIASSLFGHFIGAISGGNLYRKATFLLDAKGTQVFPEWLNIQEDPFILQGLSSRAFDSEGVATQKRDIVSNGVLNTWLLSSYAARKLKLASTGHAGGIHNWLVAAGGGNFDAMLKKLGTGLLVTEMMGQGVNLVTGDYSRGAAGFWVENGIIQYPVSEITIAGKLQDMFKNIVAIGDDIDQKGSIQCGSVLVEEMQIAGS
>NZ_CP041660.1|WP_143870465.1|1213056_1213971_+|hypothetical-protein
MVNLRLLLTGIIAVLLSVNHVLAIEAVYIPQPRSNLDIGHEYHTSLLKKALIHGAKGRAIPIIKTSLHMPEARANYEVTKGEKVDVYWFGTDAKKERDMRAIRIPTSKGLIGYRRFIIHKDSIEKFDNIASLQALKQQTACLGAHWPDIRILQASDLPVVVNTMYENIFKRVHAKRCDYFPRAYHDGYNEVSVRKNRYPNLVHYEKIVLHYPFAVYFFTPKSKETLAAWIEDGLNAMIENGEFLRHMQSHLLTAHIFPLEQSADVRYINIPNPSLPEDTDWKNKKYWFQPSDFGFAENKKPALN
>NZ_CP041660.1|WP_143870466.1|1216448_1217534_-|DUF1624-domain-containing-protein
MMRYQALDVLRGLTVAVMMLVNMPGAWQAVYTPLLHAHWHGWTLTDLVFPFFLFVIGSAMYFSLKKSESLANNNNVSRIFKRAFYLFSIGLMLNTLWMIPPNGVENLRIMGVMQRISLAYLIGGLLILCCRRSHLYIVSLLILVGYSSSLAWYSESPYSLQDNLVRFVDMSILGEAHMYQLRGIAFEPEGLLSTLPAVVNILFGFEITRVLNQATRPLVAVKKLTLICAITFFAAIILQNWIPINKYLWTSSYVLFTSAWATGVLLFLIWILDIKGRSKFAFPFIVFGLNPLFIYVFHWVLTVLYYKIPVADSNLYETMYQWILAGDTANKAASLLFAMLQLLLLWMTCYGLYRRNIIIKL
>NZ_CP041660.1|WP_143870467.1|1217602_1218772_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MLTRTVNQRKTTASFIAGCVLFFTSSLLMVCANEEAKEKQQQLEKIQQQILARQAVLDKTQSELNQVEKSVAKTDRKIGQTSRILKQTEDELQRVKAQLNELKKQKSELESTRDQQLDILSAQVKSAYHVGRNDYLKLLLNQDSPAKLERVISYYQYLNKARMQAIENLKVTLQALQKTEQLLNKNQLRLAELIKVEAEKQAQLVALKKQQQAQIKQLAAVIVSESQRIENLKQNENALTRALEALAEAIDNLPQQVEFNGLAEIKGRLLWPVKGRVQNIFGRQKSGQLKWKGVRIDADSGDVVNNVHAGQVIFSDWLKGYGLVIVVEHGDGYMSLYGHNQALLKDVGDMVHSGEPIALVGQSGGQSRPGLYFEIRHQGQPLDPTDWCN
>NZ_CP041660.1|WP_143870468.1|1218780_1220328_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTAAKKPLVLIIMDGWGYSENPENNAILAANTPNLDRLWKEYPSTLISGSGMDVGLPDGQMGNSEVGHVNLGAGRIVYQDFTRITKDIHEKTFNQNAVLSKAVDSAVSQGKAVHIMGLASPGGVHSHEDHIAAMIDMAVERGADKVYVHAFLDGRDTPPRSAQATLEKFDKQLADSGKGRVASLIGRYFALDRDKRWDRVKACYDLLTQGTAEFTAKNAVEGLTAAYERDENDEFVKATAIVDEQGQAATVNDGDAVIFMNFRADRAREITRAFVDVDFDGFAREKEPKLADFVMLTQYAADIKASCAYPPADLVNVMGEWLEKHNKTQLRISETEKYAHVTFFYSGGREDEFKGEKRVLVPSPQVATYDLQPEMNSVLLTDKLVEAIESQEFDVIICNYPNGDMVGHTGVFEAAVKACEAVDNAIGRVTDALAKVGGECLITADHGNAEQMKDPKTGQAHTAHTSEPVPFIYFGRNAEVAKPNGVLSDVAPTMLHLMGMEQPEEMTGQPIMKLI
>NZ_CP041660.1|WP_143870469.1|1220515_1220944_+|rhodanese-like-domain-containing-protein
MQQYIEFLANHPFLTGIWFVLFFAVIYTFVQAKFSPFNRVNTQQLTLLVNREDAVIVDIRATPDFNKGHIAGALNITTDQIKGGEHPKLEKHKETPIIIVCTAGMTAGKVATQLAQAGFAKVNILDGGMNAWFNANLPVVKG
>NZ_CP041660.1|WP_143870470.1|1220950_1221205_+|glutaredoxin-3
MTKVTVYSKSWCPFCVRAKMLLQSKNIDFDEIDIGKQPEKRNEMIERSQRNTVPQIFINEHHVGGCDELLAAEAQGTLDQLLNT
>NZ_CP041660.1|WP_143870471.1|1221226_1221742_+|protein-export-chaperone-SecB
MAEQNPTQNAENTGNEQQNPQFAIQRIFAKNISFETPNSPEIFTVQWKPDVQMDIDTKSKKLEGDTYEVVLSITVTAKIEDKTAFLVEVEQAGIFAIANLPPQQMAHSIGSMCPGILFPYAREAISNLVNRGTFPPLNLAPVNFDALFASYMQQVAQQQAQDQESNQKLDS

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Crispr_ID: NZ_CP041660_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_7

2795303-2795418

Orphan

Consensus_repeat	Method
TTAGGGCGACAATTTTTTATACACTTGTCGGCATAAATACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_7

>merge|NZ_CP041660|7|2795303-2795418|CRISPRCasFinder
TTAGGGCGACAATTTTTTATACACTTGTCGGCATAAATACAGATCTACATGTCGGGCTAAAGCCACGACCTACATTAGGGCGACAATTTTTTATACATTTGTCGGCATAAATACAG

>NZ_CP041660|7|7|2795303-2795418|CRISPRCasFinder
TTAGGGCGACAATTTTTTATACACTTGTCGGCATAAATACAG	ATCTACATGTCGGGCTAAAGCCACGACCTACA
TTAGGGCGACAATTTTTTATACATTTGTCGGCATAAATACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143871753.1\|2804383_2806171_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|366356
NZ_CP041660.1\|WP_143871743.1\|2791945_2792980_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NZ_CP041660.1\|WP_143871749.1\|2797067_2798543_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341246
NZ_CP041660.1\|WP_143871744.1\|2793014_2794091_+\|pseudaminic-acid-synthase	unknown	unknown	gnl\|CDD\|163337
NZ_CP041660.1\|WP_143871736.1\|2786332_2786770_+\|flagellar-protein-FlaG	unknown	unknown	gnl\|CDD\|377090
NZ_CP041660.1\|WP_143871750.1\|2798529_2799594_+\|acyl-protein-synthetase	unknown	unknown	gnl\|CDD\|282319
NZ_CP041660.1\|WP_143871755.1\|2807105_2808311_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319746
NZ_CP041660.1\|WP_143871751.1\|2799577_2800774_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368656
NZ_CP041660.1\|WP_143871740.1\|2789077_2790076_+\|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)	unknown	unknown	gnl\|CDD\|132628
NZ_CP041660.1\|WP_143871738.1\|2788300_2788738_+\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|376819
NZ_CP041660.1\|WP_143871742.1\|2791238_2791937_+\|pseudaminic-acid-cytidylyltransferase	unknown	unknown	gnl\|CDD\|274660
NZ_CP041660.1\|WP_143871737.1\|2786800_2788267_+\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|224264
NZ_CP041660.1\|WP_143871746.1\|2795526_2796072_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP041660.1\|WP_143871754.1\|2806163_2807078_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133038
NZ_CP041660.1\|WP_143871739.1\|2788694_2789066_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143871748.1\|2796324_2797068_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP041660.1\|WP_143871752.1\|2800799_2804351_+\|DUF115-domain-containing-protein	unknown	unknown	gnl\|CDD\|376693
NZ_CP041660.1\|WP_143871741.1\|2790072_2791242_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-transaminase	unknown	unknown	gnl\|CDD\|274662
NZ_CP041660.1\|WP_143871745.1\|2794044_2795136_+\|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase	unknown	unknown	gnl\|CDD\|274663
NZ_CP041660.1\|WP_143871747.1\|2796077_2796308_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|223314

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143871743.1\|2791945_2792980_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.20437e-10
NZ_CP041660.1\|WP_143871749.1\|2797067_2798543_+\|AMP-binding-protein	gnl\|CDD\|341246	cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	1.03929e-88
NZ_CP041660.1\|WP_143871744.1\|2793014_2794091_+\|pseudaminic-acid-synthase	gnl\|CDD\|163337	TIGR03586, PseI, pseudaminic acid synthase. Members of this family are included within the larger pfam03102 (NeuB) family. NeuB itself (TIGR03569) is involved in the biosynthesis of neuraminic acid by the condensation of phosphoenolpyruvate (PEP) with N-Acetyl-D-Mannosamine. In an analagous reaction, this enzyme, PseI, condenses PEP with 6-deoxy-beta-L-AltNAc4NAc to generate pseudaminic acid.	0
NZ_CP041660.1\|WP_143871736.1\|2786332_2786770_+\|flagellar-protein-FlaG	gnl\|CDD\|377090	pfam03646, FlaG, FlaG protein. Although important for flagella the exact function of this protein is unknown.	3.16881e-19
NZ_CP041660.1\|WP_143871750.1\|2798529_2799594_+\|acyl-protein-synthetase	gnl\|CDD\|282319	pfam04443, LuxE, Acyl-protein synthetase, LuxE. LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyzes the formation of an acyl-protein thioester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalyzed bioluminescence reaction A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The carboxyl terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction. This family also includes Vibrio cholerae RBFN protein, which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid.	1.84316e-52
NZ_CP041660.1\|WP_143871755.1\|2807105_2808311_+\|hypothetical-protein	gnl\|CDD\|319746	cd16438, beta_Kdo_transferase_KpsS_like, beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like. KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.	2.74806e-21
NZ_CP041660.1\|WP_143871751.1\|2799577_2800774_+\|hypothetical-protein	gnl\|CDD\|368656	pfam05893, LuxC, Acyl-CoA reductase (LuxC). This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalyzed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components.	6.29329e-24
NZ_CP041660.1\|WP_143871740.1\|2789077_2790076_+\|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)	gnl\|CDD\|132628	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase (inverting). This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.	0
NZ_CP041660.1\|WP_143871738.1\|2788300_2788738_+\|flagellar-export-chaperone-FliS	gnl\|CDD\|376819	pfam02561, FliS, Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.	1.10504e-37
NZ_CP041660.1\|WP_143871742.1\|2791238_2791937_+\|pseudaminic-acid-cytidylyltransferase	gnl\|CDD\|274660	TIGR03584, PseF, pseudaminic acid cytidylyltransferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.	5.76129e-120
NZ_CP041660.1\|WP_143871737.1\|2786800_2788267_+\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|224264	COG1345, FliD, Flagellar capping protein [Cell motility and secretion].	7.24974e-58
NZ_CP041660.1\|WP_143871746.1\|2795526_2796072_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	4.78636e-14
NZ_CP041660.1\|WP_143871754.1\|2806163_2807078_+\|glycosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	4.58032e-34
NZ_CP041660.1\|WP_143871753.1\|2804383_2806171_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|366356	pfam00884, Sulfatase, Sulfatase.	8.22579e-33
NZ_CP041660.1\|WP_143871748.1\|2796324_2797068_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.70131e-69
NZ_CP041660.1\|WP_143871752.1\|2800799_2804351_+\|DUF115-domain-containing-protein	gnl\|CDD\|376693	pfam01973, MAF_flag10, Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.	1.80442e-26
NZ_CP041660.1\|WP_143871741.1\|2790072_2791242_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-transaminase	gnl\|CDD\|274662	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.	0
NZ_CP041660.1\|WP_143871745.1\|2794044_2795136_+\|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase	gnl\|CDD\|274663	TIGR03590, PseG, UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.	1.98327e-43
NZ_CP041660.1\|WP_143871747.1\|2796077_2796308_+\|acyl-carrier-protein	gnl\|CDD\|223314	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	0.000282049

>NZ_CP041660.1|WP_143871745.1|2794044_2795136_+|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase
MTGHIYKMHIMPSKTNTHSKVVFLTQANSLLGSGHLMRCIALAQACEKARIAPVFALDKNSFIFAKQNPLFDYPVYLMDEQQGSQKSLEKLAQYCNQQTIGYLFIDGYNFNLEFRQQLFKALRQYACNCQLISIDDNADQAKMFTDWILNPSTDINAIPDYSKIAPGAKLMAGHHYRLLRKEFSQQQILPLDKRSEIIITMGGTDPFSYSVKVLNLLAQLNLTAPVRCIVANGFEDKTQLIAQIEKLPSNFSYTVAPHNIAAIFANAKLAISAAGTAQFELYAMQTPAILIILADNQYRNTQNAAQDGWAKVLDFRQTFDSDKMTRAIQECLNETTLLHMQSKIQPGSAEGAKNVVNTLLNGK
>NZ_CP041660.1|WP_143871744.1|2793014_2794091_+|pseudaminic-acid-synthase
MKEIKIGKCTLGPAHNPFIIAELSGNHNQDLNLAKDMVQAAANAGVDAIKLQTYTADSMTLPIDSDNFRIQEKDSLWYGAHLHELYQKASTPYEWHAELFSFANSLGLEAFSSPFDEAAVDFLETLNVPCYKIASFELTDLPLIEKAAATGKPLIMSTGMASEAEIQQAIDTAHQAGNAQIIILKCTSTYPASAENTNLLTIPDMRQKFNCPVGLSDHTRGIGVSVASVALGAVAIEKHFVLDRTAGGVDAEFSLEADEFSALVEASELAFKALGKVTYGGSPAERNSKYYRRSIFACSDIKAGEPFTRENVKVVRPALGLAPKHFKQVLQSNATQDIKAGTAIDWPHLQNAHNAEQN
>NZ_CP041660.1|WP_143871743.1|2791945_2792980_+|glycosyltransferase-family-9-protein
MSSTEKPLKILIIRLLNLADVAAIGVPALRYFKQQNPSAEFTFLTFSQGAEVIQLAEPDCRVMQLARDQWPEDFIPAMEAFLGLAEQIVGEAYDQIINLDTSFMACFLTRFLKDAGERAMGNYLSISVQELIEQFQKQALKPEYVNQPSAYLESTFSAMHKWFTPWWEAEYLPNEGYPEHFLVTCCGFDRLQMNMSIPVTADKKLTQAGQGKKTIALAGNALPNYPHMQVVKKRLLELGYQVWSEPFTDMPIKEKLEKLAACDLLITPPSELLWLAKTVNCKVLLISGATQPQMIMPDFATDPTGECAACLSQLTGQSPVSPCNCISADEIMKCVDEIFTKHDG
>NZ_CP041660.1|WP_143871742.1|2791238_2791937_+|pseudaminic-acid-cytidylyltransferase
MNIAIIPARGGSKRIPKKNIRPFAGKPLIAHSIQVAQQAKIFDHIMVSTDSDEIAEVAREYGAEVPFIRPENLADDFTGTRPVTNHAIQYYLKQGIDLNYACCIYATAPLLTAEYLMQGYQALQAQKDKAFAFSVCTFPFPVQRALKQHNTGVTAMFPESIGKRSQDLEEAFHDAGQFYWGRVEDYLSKKGMFSEHSVPIMMPRFLVQDIDTLEDWHTAELMYKAHQLKESE
>NZ_CP041660.1|WP_143871741.1|2790072_2791242_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-transaminase
MIPYGKHSIDQQDILAVVDVLENQFLTQGKQVPAFEEALCQYTGAQYALAVNSATSALHVACLALDVKAGDIVWTTPITFVATANCIRFCGADVDFVDINPRSRNLCPTALAQKLEIAQAEKRLPKAIIAVHFAGYSCEMQQIYTLCQQHGVKVIEDACHALGGDYQGKKIGNCRYSDFTVFSFHPVKSITTAEGGALLSNQQRLIERATLFAKHGVTREQAQMQDVVEGPWCYQQVELGFNYRMSDLQAALGITQLAKLDAFIARRRTLADNYFNHLENLPLQLPDKKQLAESAWHLYAVELKGQNRLQVYQLLQHAGVHANVHYSPVHLQPYYQKLGFNKGDFPAAEHYAEHTLTIPLFQSMTDEQQLHVVQALEQALEQALRDCTK
>NZ_CP041660.1|WP_143871740.1|2789077_2790076_+|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)
MFDGKSILVTGGTGSFGRCFIKHLLTHYKPHKLIVFSRDELKQFEMQQEFTSPVMRYFIGNVRDKDRLITAMRDVDYVVHAAALKQVPAAEYNPMECIKTNIMGAQNVIEAAIEANVRRVIALSTDKAANPVNLYGATKLASDKLFVAGNNISGAHGTRFAVVRYGNVVGSRGSVVPFFRKLINEGKLPLPVTHPEMTRFWLRLEQGVEFVVKSFQRMQGGEIFVPKIPSVRILDLVEAMSGTREYEAVGIRPGEKLHEIMVPEEVAHHSLEFDDHYVITPPIRFFEKKLEYSHNRLGEEGQKVSEKFEYHSGTNPEFLTLQQLIELDKNIL
>NZ_CP041660.1|WP_143871739.1|2788694_2789066_+|hypothetical-protein
MNYKDKDSKSKVQSSSVETLSIEGLNHAYTPPELALLNTQLVEIINEDELDSANLLKLIEQRDELIQGLLDTFKNLEQQKEFALAERDVNNRLITLCNQLFKQSESALMQLVKGQKAIKKYKK
>NZ_CP041660.1|WP_143871738.1|2788300_2788738_+|flagellar-export-chaperone-FliS
MFKRGINAYKQGNIKQQIAQADPHQITLMLMQGALDKMAYAKGCMERKEHENKSIHLSKASAILVNLRDTLDFSVESEVTDNLYALYDYMINRLTDAHVQNSTQIMDEIIALMLPIKTAWASIPEEAKQEAYELQRQRQQEQSAV
>NZ_CP041660.1|WP_143871737.1|2786800_2788267_+|flagellar-filament-capping-protein-FliD
MGIQSIGVGSGLDLSGLVQQLLEAERKPKQDRLDAREENLETVISAIGSLKSKMDDFQASVKDLRDSTNLQSRKAVVTHPDVAEDESGPFTAEASNSATQGSYKIYVEELASGSRLQTANAAFSSSSDVISSSAGSLTFKIGSTGDSFSVAVTAGMTLSQLRSAVNSATGNDFGINASLVDTGTANGTKLVFTSETTGTGNDLSIVNDNDIAELEQIATVDSTEVTTYGNVSIQSATNAKANIDGIDVESETNEFENVIQNVSFEVFEKSSKDSVGDFIPSTLEVGYDKDGLKNKITDFVDNYNAIQDELASLTKYGISELEDDGALAGDYMVRGIQSGLSSIITENVSASALGSLFQIGISFDDDGKLEISETDEFGFGSGQDLLDDALEDNFDDIASLFSDDDEGIANKLYDYVYEYTTFGGLLRTREQSFKDEKDLLSDERERFELRMADYEQLLRDKYINLDLTVAKLQRTGNALNASLASAFL
>NZ_CP041660.1|WP_143871736.1|2786332_2786770_+|flagellar-protein-FlaG
MDIDVSQSGNVFAYSGSNPASRRYSEENRQNTDDSFASKQSETKINIADFTKVDGEQADKASRAEQQDLDTAVADVADFIQAQNRQLDFSFDENSNKSIIKVTDSESGEIIRQIPSEEMLKLAERINELRSDAGEAIGVLVNRQV
>NZ_CP041660.1|WP_143871746.1|2795526_2796072_+|GNAT-family-N-acetyltransferase
MKDYLSGYAVELNSVSQDNMMLLFEWRNQPEIRSQMVNTEKLELAQHQNWFAKLAARTEQKHYVIYYKQHAIGSINVRSTDGQAIKQTREAEVGLYIGEEKYRNNIVAFAPSLLINDYLFENLNIQQLRSKVRSQNKAALKYNQQLGYQLKPIDEDFTEIILTADNYKQTTQQIKAWLSRG
>NZ_CP041660.1|WP_143871747.1|2796077_2796308_+|acyl-carrier-protein
MFEDKLKQAFVNALSIEENEVTAELAYSQHPKWDSTAHMVLIAELESSFDIMLDTDDIIDMSSYQKAGEIIQKYIA
>NZ_CP041660.1|WP_143871748.1|2796324_2797068_+|SDR-family-oxidoreductase
MQQDKSILIVGATGGIGSHTAKALAKQGYGLIISARHLDKLESLKAQLLQLGAAGVECFVLDLQDSSAIKGLFQFIQKQVKHLYGLVNCAGTLHESPLMMIRPDDIQAQVNLHLTSSILLAQYASRLMVRNKQGVIVFLSSVVAAQGASGQALYAACKSSLFGLTKSLAKELGGQNIRVNLIEPGFIETELVAHYSDEQRAELKQQTALKSLGQADDVAQLISFLISSKARYITAQNIAVDGGLALS
>NZ_CP041660.1|WP_143871749.1|2797067_2798543_+|AMP-binding-protein
MMDFWSKSHFLQAPKTAYIVDSIAGEDSSAIAYSYQQVDSMIDTFINEQIKPDVYTGKKIIAIEANNQLGCLVAYLASLRLGYLVIFIDANLSTEQKNNLISEYAVDLVYQPKKTLIRHNNNKHGQTQKIAPQLALLLSTSGSTGSPKMVKLSYQNLSANCQSICQFLPIQQTDSVITTLPMHYSFGLSVIHTHLFRHSTLILSDFGVMEKSFWQLFKQYQVSCFYGVPFIYEMLQRLNYKRLPLKQVRFFAQAGGKMREAQIHHLHGFLTDKQQLFIMYGQTEATARIAYLEPAKLPAKAHCIGQAIPNGQLKLINENDLAADTTARTSGELCYRGDNVFCGYAHSSADLAELETIDWLKTGDIATRDTDGDYCIIGRTKRFIKIVGKRINLDEIQSWLDKRYPAICPVGKDDLLILTRCKRFESEIESEIESEIESELAEQLALFLGCHPRYIKQVQIPEMPINTNGKIDFMQLNKIALQALENQDANG
>NZ_CP041660.1|WP_143871750.1|2798529_2799594_+|acyl-protein-synthetase
MQMASLVNMPVYGLNKLEKKQFLTARLLELTQHHYQHCGEYKRLLHCIGETCMPKDAEHIPPVAARLFKEYQLKSIDEEEIFRLMRSSGTHGSQSSIYLDADSAKLQSQVLVKILQHWLGKARRPMLLIDAAQSVQNKNGMTARAAGLQGLSFFGRNHCYALNSDMQLDVARITEFFQRYEQENILIFGFTFIVWQQFIQQLEKLNLKFNLQNATLIHGGGWKKMQQQAVNDALFQQHIKNRLGDVTVHDYYGMVEQTGTIYMQCEHGYLHAPVWSDVMIRDTNDLHLLPFGEKGLIQVNSTLPTSYPGHCILTEDLGVVHGEDDCQCGRLGKYFTVHGRVPNAQVRGCSDTFS
>NZ_CP041660.1|WP_143871751.1|2799577_2800774_+|hypothetical-protein
MIHSLKFIEQVKWHLKSDVFIQPQTNLAWQDEIVDAVNGLSAFILKQPSLKAYPEIIALAFWFRGAHLKQLQQQGLQASDKNGNGKIAGKVFHIAPANVDTVFLYSALLSVLCGNQNIVRVSGRSGEVTHILIEIIKLYAESELGKTLARYLSIVEYSAQLNNVTAQLSRWCDLRVVWGGDTTIELISAIEPDTKQLSFPDRYSIALLTLPESNSIEATAQNFLTDILPFNQQACSSPKAIYWLNVDENKQQDFWQSVQQLLPKNKNQLTMSNKVEQHILLQKLAVSHGIELAQHSGKSFAKIQSVGPLGHCKVKNLTAEMLIEHSGNGLVLEMQIETPQQIENNDKLQSLLLDVEVKDVEVKECALNLGKRQAQLGKALEFDVYWDGINLIESFTLN
>NZ_CP041660.1|WP_143871752.1|2800799_2804351_+|DUF115-domain-containing-protein
MLKDIRLHIEQDEEKQSEIEAELAADIQRQHSRNIQAFSYHIPSLLSFVQNIRTSNISLFCNRFGQRNIVDYGNGRTLYGLDPKAEIHQQFNAFCRFPQYVALNETLENQSSNIALKKATKLEDLPHYQTYLERSALPKEIDVLVVLGLGMGQHIVELLNSRNIKHLAIYEPELQYFQCSVMAIDWELILDTAKSKGTAIYLQIGKDGRDLLADVSELNQHFPFDGFYLYPHYHHPVFDSLAVSLRDFGWQKCMAQGINYQQQQADNYLPIWTQSIDLTNLASIPDAGMPDTDRKTDGKTDSVFAKNIAAFKKYYPQIAKEFSDYQPNNWLPVVNQEQQINLIEKKSLTSWHGDNPKQECEQNFENFCRYPNKDGLVLGYKGTKLKHYLHYQFVAETEKILEEIEEEAGNLPQDIKSLIVFGVGTGYQLECLFNHHQVENLFICEPNRDFFYASLYSIDWAQYLKQIDESGGRLYLNIGDDGTHLFRDLLNQFYSIGPYILANTYFYQSYYNSNLVAAIAQLREQLQVVISMGEYYDHARYGIAHTTETIARGYPFLIQEADKKLSYQDKEVPIFLVGNGPSLDQSIETIKEWKAQAIIVSCGTALMPLYKNGIVPDFHAEIEQNRSTFDWICRIGDFDYLKQISLISCNGIHPDTCDLFKDVYLAFKEGESSTVSAIEVIGKGLYEELQFAFPTVANFALNIFTKMGFNQVYLFGIDLGFYDKTKHHSTQSGYYKENGEQMYDYEAKNNTSMVVPGNFRPTVFTKHEFKVSKTILEQTLAQRKVDCFNCSDGALIVGSVPLEAELVLLLLDSKYKKDCLLHIRFNAFSNSKCSGYDGKYQHKYSELILKMEIDALLAKSSDSSGIPDVDELIRFHKELLFSSYSRGQSLLFYYLYGTVNYMNSVLLKAMYSSEANVFIGHLLSIWHKYLNKIKKDLDIRYQAYDSSSSFATDREYKLIMHKKNLVDFKVEVLDCTYKSILKRFVEHNFSNSALNCEKVHLAYFGNRTTYNDYTQTFVSDSKTLVGFSNLTFGQDLKTLYYSCNPKDSYFWWLSYDNLQLNDVVTGKVPIASPHRSYFYAKFIHSMDNIFLFLPKYNFVEQEYLNADAVETLNYICNQLEFVKSFVEFFDYIAVPKKGIDTKDCVLDAVGNRGCIIESPIDIEVLIGKSVSLREAKNILDSIN
>NZ_CP041660.1|WP_143871753.1|2804383_2806171_+|sulfatase-like-hydrolase/transferase
MAIILYLTLTLIFLTIVKYLKSSRGAIYRFIGLSDVNWSAFLSLILWFVSDFIKSDTASLAILIMLLILGLILIIDAALFVQYKIEVNIQTVKWFMSGSKGILKGSGHFWNFFWGKPLSFGGFIFLFAIFLYVFFYDRFFSQSNVLIATGKECLDNILILPFTLALLLLNLVKMSFRPKSSFFNISSIISSLFVHPKLFKLPKVNNNDLNTLLRPSEQKKSAFFSSCSGANVILFTVESMGNYIATDNGKYIRSRLVERFQNGLWYSKAHYSLCPNTTVSTNQIYTGKYSNNPYNKADSVFYGGEPEHLTVLKRLGYKTMFLDSADIKLYNYDRLLKRIGFDRIWGTDDLPAKRNGDYRLLDMVEPIVKEIEGDKPFFLHVINDQTHMPYQIIDKKKFNRFKGDGKKSEYLNALDEVDFILSEFLKKLERKVDLSNTIMILTGDHGESFGEFGYYFHSNSVVPEQITVPFWLQHQKLPSRLLEHSSHFDLFPTIFDLLGIEYSHFSLGRSLGLNERERPCEYFFHSATLKGNTPANFSLIQNDTMIWLDKFYGKSRVFKHNNTQWNECISHGNSKDLENRLWLYLYENDLALKDV
>NZ_CP041660.1|WP_143871754.1|2806163_2807078_+|glycosyltransferase
MCSLSILMPVKNVEPYISECMDSILKQTYSKFEIIVVDDHSTDMTADIVKQYANNDARVKLVKAQESGFVAALNLGLEYCSCNLIARMDGDDIAREDRFQIQMDFMENNPDVDVCGSWIELFGQKTEVWHYRQFDSHIKSLMMFKRSGFGHNAVIVRKKVYDAFKYESAFEFCEDYRLWCQLATKSTFKFHNIQMPLVKYRIHSTQVIATKTAVQSTLREKILKDFIAELGWEMDPNEFILYQAIRELDFSRTKASLQEIRKMFERLREISNARFGDDCGLFDLHWQRLVECIDAKQFTQIVDN
>NZ_CP041660.1|WP_143871755.1|2807105_2808311_+|hypothetical-protein
MNFIDVDIAKLGVLKNKQYAIIGTGGYSKKLLQHIEKNNVTLPRCFCYIGENTPNHNNLSLPLIELNTAKHIKYFVIGSNVFQFEIIEKARKILPDSVKYFDLSSELTNNISYYEHKITLQKPYILFYSVDPNNHKKWLSGFERYLKSHDIELIFKHPLQQTSHEVLKQSRGIFLWNGTTSSFNYLKEKLIHLNKKFTYAECGFFPQKDYVYFDRHGINDESSLQHGNVSWLPNNYLEIIAQHKTEYFLDNYPKLSYGEYVFVPLQLESDSNVRKNSRFKYGMQEFIEYICTLYDQPIIFKAHPLDTKTDKYVLPKGRWATSSETTHQLIHWSDIVHGINSTVLFEATLMGKKVIAEGLCLLNRFENKQRLLAAMILRQKKINDANFSREYLQQFTNLEVI

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Crispr_ID: NZ_CP041660_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_8

2843833-2843942

Orphan

Consensus_repeat	Method
CTTGCTTTGTTGGCCTAAAGACCAACCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_8

>merge|NZ_CP041660|8|2843833-2843942|CRISPRCasFinder
CTTGCTTTGTTGGCCTAAAGACCAACCTACATTATTGTCGGTTTAGGGTGACAGTTTTTTCATTTAAAACCAGTGCACCTTGCTTTTGTTGGCCTAAAGACCAACCTACA

>NZ_CP041660|8|8|2843833-2843942|CRISPRCasFinder
CTTGCTTTGTTGGCCTAAAGACCAACCTACA	TTATTGTCGGTTTAGGGTGACAGTTTTTTCATTTAAAACCAGTGCACC
TTGCTTTTGTTGGCCTAAAGACCAACCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143871791.1\|2849566_2850007_+\|flagellar-export-protein-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP041660.1\|WP_143871787.1\|2844244_2844583_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NZ_CP041660.1\|WP_143871786.1\|2842124_2843456_+\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP041660.1\|WP_143871793.1\|2852832_2853372_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP041660.1\|WP_143871788.1\|2846315_2847356_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP041660.1\|WP_143872956.1\|2838410_2839208_+\|flagellin	unknown	unknown	gnl\|CDD\|183759
NZ_CP041660.1\|WP_143871790.1\|2848231_2849563_+\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|181599
NZ_CP041660.1\|WP_143871784.1\|2839426_2840872_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225114
NZ_CP041660.1\|WP_143871780.1\|2834787_2835600_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|223528
NZ_CP041660.1\|WP_143871794.1\|2853388_2854462_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP041660.1\|WP_143871778.1\|2832539_2833595_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|133048
NZ_CP041660.1\|WP_143871792.1\|2850199_2852749_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350657
NZ_CP041660.1\|WP_143871795.1\|2854500_2854902_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|236360
NZ_CP041660.1\|WP_143871789.1\|2847368_2848160_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NZ_CP041660.1\|WP_143871785.1\|2841029_2842112_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NZ_CP041660.1\|WP_143871782.1\|2836648_2837629_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|275033
NZ_CP041660.1\|WP_143871781.1\|2835602_2836646_-\|polyhydroxyalkanoate-biosynthesis-repressor-PhaR	unknown	unknown	gnl\|CDD\|274655
NZ_CP041660.1\|WP_143872957.1\|2844637_2846323_+\|flagellar-basal-body-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP041660.1\|WP_143871783.1\|2837905_2838304_+\|adenylyltransferase/cytidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|173922
NZ_CP041660.1\|WP_143871779.1\|2833610_2834795_-\|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)	unknown	unknown	gnl\|CDD\|274654

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143871791.1\|2849566_2850007_+\|flagellar-export-protein-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	1.3233e-20
NZ_CP041660.1\|WP_143871787.1\|2844244_2844583_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	7.81127e-26
NZ_CP041660.1\|WP_143871786.1\|2842124_2843456_+\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP041660.1\|WP_143871793.1\|2852832_2853372_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.20067e-76
NZ_CP041660.1\|WP_143871788.1\|2846315_2847356_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	3.33096e-151
NZ_CP041660.1\|WP_143872956.1\|2838410_2839208_+\|flagellin	gnl\|CDD\|183759	PRK12804, PRK12804, flagellin; Provisional.	1.16573e-37
NZ_CP041660.1\|WP_143871790.1\|2848231_2849563_+\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|181599	PRK08972, fliI, flagellar protein export ATPase FliI.	0
NZ_CP041660.1\|WP_143871784.1\|2839426_2840872_+\|AAA-domain-containing-protein	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.70217e-152
NZ_CP041660.1\|WP_143871780.1\|2834787_2835600_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.22851e-30
NZ_CP041660.1\|WP_143871794.1\|2853388_2854462_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	3.86994e-177
NZ_CP041660.1\|WP_143871778.1\|2832539_2833595_-\|CBS-domain-containing-protein	gnl\|CDD\|133048	cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	5.49402e-126
NZ_CP041660.1\|WP_143871792.1\|2850199_2852749_+\|hypothetical-protein	gnl\|CDD\|350657	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains. The flagellar hook-length control protein FliK is a soluble cytoplasmic protein that is secreted during flagellar formation. It controls hook elongation by two successive events: by determining hook length and by stopping the supply of hook protein. It contains an N-terminal domain that determines hook length and a C-terminal domain that is responsible for switching secretion from the hook protein to that of the filament protein, by interacting with FlhB, the switchable secretion gate.	1.06061e-22
NZ_CP041660.1\|WP_143871795.1\|2854500_2854902_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|236360	PRK08983, fliN, flagellar motor switch protein FliN.	5.8792e-74
NZ_CP041660.1\|WP_143871789.1\|2847368_2848160_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	1.18355e-60
NZ_CP041660.1\|WP_143871785.1\|2841029_2842112_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	5.95048e-40
NZ_CP041660.1\|WP_143871782.1\|2836648_2837629_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|275033	TIGR04180, NAD-dependent_epimerase/dehydratase, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family. This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster.	0
NZ_CP041660.1\|WP_143871781.1\|2835602_2836646_-\|polyhydroxyalkanoate-biosynthesis-repressor-PhaR	gnl\|CDD\|274655	TIGR03569, ORF_8_similar_to_NeuB_family, N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.	2.80252e-156
NZ_CP041660.1\|WP_143872957.1\|2844637_2846323_+\|flagellar-basal-body-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0
NZ_CP041660.1\|WP_143871783.1\|2837905_2838304_+\|adenylyltransferase/cytidyltransferase-family-protein	gnl\|CDD\|173922	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.	2.42712e-47
NZ_CP041660.1\|WP_143871779.1\|2833610_2834795_-\|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)	gnl\|CDD\|274654	TIGR03568, Polysialic_acid_biosynthesis_protein_P7, UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.	1.1122e-149

>NZ_CP041660.1|WP_143871786.1|2842124_2843456_+|response-regulator
MDNKILLVEDDENLREAISDTLLIGGFQCIEAENGEQALVLLNQHPISLIISDVQMPGINGLSLLKSVKTKFPEMPFLLMTAFANIKDAVDAMREGATDYLAKPFSPEVLLNLVGRYMPEDKSESYKPVVADEKSIQMLQLASRVAKSEASVMVLGPSGSGKEVLARFIHNESPRSENAFIAINCAAIPENMLEATLFGYEKGAFTGALQACPGKFEQAQQGTILLDEISEMDLVLQAKLLRVLQEREVERLGGRKTIKLDVRVIATSNQDLKQAVANGTFREDLYYRLNVFPLTWLPLSERKLDILPLAEHLIERHSVRAQKQAPKLTTAARSLLQQHSWPGNVRELDNVIQRALILCQHQIIDAADILIEADTAVPNNVPVENNDESLGKELRQQEHQIILDTLIACHGKRNKVADKLGISPRTLRYKIAKMKEMGIEIPV
>NZ_CP041660.1|WP_143871785.1|2841029_2842112_+|PAS-domain-containing-sensor-histidine-kinase
MQLNLQNLAQESYAGELNDLRSQAARLSHLVNILPAGVVILNENGFVEEANQIAIDLLGEPLLHARWIDVIDRAFNPQADDGHEVSLHDGRRVKLETTALTPESGQLILLTDMTHTRLLQERLSHFKQLSTLGKMMASLAHQIRTPLSAAMLYASNLANTSLAKVSQSNFQQKLIARLQDLDNQINDMLLFAKTGQKQVAETLSLGQLLSEVQAGSEAMILQNQGHLSTQLPEPDILIYGNKNALASAIQNLIHNSIQIIGAGARIQLLAKRSPENPDNVWVQVIDNGPGITKEIQEQIFEPFFTTRGKGTGLGLAVVKAVTEQHQGRVFVESQLNSGCTFTLELPVLVTKPVQLAAGQN
>NZ_CP041660.1|WP_143871784.1|2839426_2840872_+|AAA-domain-containing-protein
MPSERRILLIDSKNESLEQFKTILQFIDEDYDWVLPEEAAQHLKQHQNWKAVLLGAGVKNIDDSQKLINSAPELPFIVQESVSELTAFANVVAAINGSINYAQFTHALHHCESYLRNKPGRSVSSSKDLLHTLVGKSQEMQTVRKLIEQVSPTDANVLVLGESGTGKEVVAQSIHRLSKRAKGPFVPVNCGAIPGELLESELFGHEKGAFTGAISARKGRFELAQGGTLFLDEIGDMPLPMQVKLLRVLQERVFERVGSATQVKADVRVVAATHRELEQLVEDGKFREDLFYRLNVFPIETPALRERREDIPLLAQELINRLAEREGESVKLTDNAYQSLMEHKWSGNVRELANLLERLTILYPNQIVDVADLPAKYQHIEVEAFEPEYPESMLEREALNDLFGSSEEDYDEEDDFNDVGLMTSLPDEGINLKEYLAELEINLINQALDFHDGVVARAAEMLGMRRTTLVEKMRKYGLNQA
>NZ_CP041660.1|WP_143872956.1|2838410_2839208_+|flagellin
MNNISSGANANFLDQINRKQDTIFEQLSSGKKVNKAADAAAAQQIIERLSSESNAYQQSVRNAYDGISLSQVADGALQGINDDAQRIRELTQQAGSGILTDADRQAIQSEISGLQQNIQSTIENTEFNGQSLFTQDNEFSFQVGSGAGQSRSVNTSDLASQLSGLQNIDVTSGNIDTALESIDSAIEFVGSERGSLGATANAFESAINNLNTTNENVQAARSRLQDTDYAQATADQAANDILSQSSNIVAAQARQQQESVLSLLS
>NZ_CP041660.1|WP_143871783.1|2837905_2838304_+|adenylyltransferase/cytidyltransferase-family-protein
MKKIITFGTFDVFHVGHINILERAAALGNHLTVGVSTDALNYDKKQRYPIYEQSARVKIISSLQFVDAVFLEHSLDMKAEYLRQHQADILVMGDDWQGKFDCFKDICEVIYLPRTPSISTTEIIEVVHSLSK
>NZ_CP041660.1|WP_143871782.1|2836648_2837629_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKKILVTGADGFIGSHLAELLTQNGFQVKALCQYNSFNSWGWLDTSPLAKEMEIVSGDVRDPFFCKTISKDIDVIFHLAALIAIPFSYHAPQSYVETNVTGTLNICQAALENDISQVIHTSTSEVYGTAQYVPIDENHPLQAQSPYSASKIAADAMAVSYFNAFQLPITIARPFNTYGPRQSARAVIPSIITQIANGAEVLKLGDLAPTRDFNYVEDTCNAFISLLNKTNILGETINLGSNSEISISDTVKKIITLMNKNVTIEQDEQRLRPKNSEVFRLLCDNTKLKEKTGFEHSVTIDAGLQKTIEWFTNPDNLRQYKANIYNI
>NZ_CP041660.1|WP_143871781.1|2835602_2836646_-|polyhydroxyalkanoate-biosynthesis-repressor-PhaR
MNKKHMQIENLPIGPEFPPVVIVEIGINHNGSLEEAYKLVDAAYKAGAQIIKHQTHVVDDEMSPEAKKVIPAHTKESIYEIMENCALNEADEIKLKAYVESKGMIFISTPFSRAAADRLQKMGVSAYKIGSGECNNYPLIEHIAQFGKPIILSTGMNDIASITKAVEIIEKHKIDYALLHCTNIYPTPNKLVRLGAMQQMQHAFPNAIIGLSDHTTTNYACLGAVALGASILERHFTDSKSRVGPDISCSMDPSDLTDLITGSRLIYESLGGTKEAAQEEQATIDFAFATVVTIKDINAGETLDKTNVWVKRPGTGEILAKDFENVLGKTTIKNIPTGTHLSYRDFV
>NZ_CP041660.1|WP_143871780.1|2834787_2835600_-|NAD-dependent-epimerase/dehydratase-family-protein
MLYISGASGYIGSALCKHLNKQSIQYNTIRIRIDEPESTGSLLQINKEDTLIHLGECANITQANQLGERYIQQNLAALKKLLFLGFNKIIYVSSTAVYGETGNTPAMEADSDLVSSHIYTRNKITCEQFIQKHFPEYVICRLSNVYGGTMKQDCLFADILNQLSAPTVTLRNTAHTRDYIHITDVCTAITQALKINVNGLYNISAGQSYSVSEIANQLFKIHNATPILKGHSTTTSSQYICNKKAMQALNWIPQMDISAGLKTIKVNSHE
>NZ_CP041660.1|WP_143871779.1|2833610_2834795_-|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)
MNKHIAVFTGNRAEFGLLKPVIEALNKRSTFKVSLIVSGAHVSHVFDASKNEIAQAGFNVACEIELAKITSCAASTPFAIGDGIQKFSHALEKLQPDFLIVYADRYEGFAAVIAASQMSIPVAHMEGGDLTEGGALDDSVRHAMTKLSHLHFTTNEEAKNRVLKLGEEAWRVFNVGFSAIDTINKKLFYSKTEIQNEFNLDANQPIIVFTQHSVTTEYQKSKEQIQSALTALQKVMAETNCKIFLTYPNDDIGCEAIIEKIEEFAKKSENTICLKSLGQKRYYGLLNLAKHDWKITCVGNSSSGIKETPAFNCPTVNIGTRQAGRLQASNVINTSYSPEDIYQAIKQCLFDKTFIKSCQKIKNPYGTGNAGENIADILANSFDKDQLLKKKMTY
>NZ_CP041660.1|WP_143871778.1|2832539_2833595_-|CBS-domain-containing-protein
MVKDWHKTLVSEDSTILDAMKVIDKSTLQVALVISSQQKLVGVVTDGDIRRGLINNHLLSDPVVNIMNTKPLALDTSSSETQRIEFLLQHGIRHLPILKDGKLVDLFIYPSLRKKTYNNPVFLMAGGFGKRLRPLTENCPKPLLKIGSKPILELILLRFINAGFYNFFISTHYLPEKIVAHFGDGRKWGVQITYVHEETPLGTAGGLSLVKQQNIQAPMIVMNGDLLTKVDFTKLIDFHAKSQAIATMCIKHETYQIPYGVVEYNDNTLTGITEKPTKSYFINAGIYVLNPALVKSIDENTYLDMPTLLEMNLNKGQEVAVFPIHEYWLDIGQHEEYSQAQIDFHTDDYES
>NZ_CP041660.1|WP_143871787.1|2844244_2844583_+|flagellar-hook-basal-body-complex-protein-FliE
MKIGADNLYAQMQSLAAQAGTPIQSEVAPVGPKVENANSSTFGKLLNQAVENVNELGHKSKEMTNRFEMGDQSVSLADVMIAKGKAGIAFEATVHVRNKVMEAYDKISNMPV
>NZ_CP041660.1|WP_143872957.1|2844637_2846323_+|flagellar-basal-body-M-ring-protein-FliF
MVNDNNTDVATSDMSTEEQKSGFMGSLGNVDILRQVTLILALAICLAIAIFIIVWAREPDFRPLGKMETEELISTLDFLDQQKIEYRLDGDVIYVIEDEYQDIKLKMTRSGLSSGPAKGDDILLTDMGFGVSQRVEAERLKYSREQTLARTIEELHSIQRAKVLLAIPKENVFARHEKKPSATVVLTMKRGKMLASEEVDSVVDIVSSAVQGLEPTRVTVTDQNGRLLNSGSQNDLSSRTRKEYEIEQKREAEYLEKIDSILIPVVGLGNYTAQVDVTMDFTSIEQTQKRYNPDLPAVRSEMTVETNSLGGIAAGIPGALTNQPPLESNIPEEARGGDGNASPSKSHREATRNYELDTTISHTRQQTGVIRRLSVSVAVDYLPNVNDETNETTYDPRTTAELANIRRLLQGGLGFDVQRGDTLEVVTVPFVRTDLGEIEETPLLEQPWFTKLVRLLLGTIIIVVLILAVVRPMLRKLIYPEEVVDEYSDDSISSGVDLGDETIDMLSADFDASSVGFNQDGTLMLPDLHKDEDVLKAVRALVANEPILSAQVVKAWLNEDA
>NZ_CP041660.1|WP_143871788.1|2846315_2847356_+|flagellar-motor-switch-protein-FliG
MPDQEVANTSEEYDISRLDGIEKAAVLLLSLSEEDAAQILKHLEPKEVQKVGMAMASLDDFSQGKITAIHKLFIDEIQRFSTIGFQSQEFVRKALTAALGEDKAGNLIEQIIMGSGAKGLDSLKWMDSKQVANIIRNEHPQIQTIVLAYLEPEQSAEIMSQFSEKVRLDLMMRIANLEEVQPAALQELNEIMEKQFAGQAGAQAAKMGGLKAAADIMNYLDTNIEGQLMDSIREHDEEMSQQIQDLMFVFDNLADVDDKGIQAILREVQQDVLMRAIKGADESLKEKILGNMSKRAAEMLADDLEAMGPIRISEVEAAQKEVLSIARRLADAGEVMLGGGGGEEFL
>NZ_CP041660.1|WP_143871789.1|2847368_2848160_+|flagellar-assembly-protein-FliH
MVDDFKFRKSIRSDDEILKELKTWNIPIVESEANNKADDYTNALGKPEGWTYEEPEPEPEAPKPLTIEELEAIRQAAYEEGFAEGKEEGFVKGEAEGKEQGYQAGFEAGKEAGHQEGLESGTSIMEEKADIWNQLIQQLDNPLQKMDENVEKELLQLAVALAKAVINTELQTNDSIILQSIKQAVEKLPFNTKQCQIFVNPEDYETVINQYTTAEIERRNWHVSADPNISRGSVEIQTELTSITYTIEDRVREVFAQLEDQTG
>NZ_CP041660.1|WP_143871790.1|2848231_2849563_+|flagellar-protein-export-ATPase-FliI
MALALSEKINSYQKLVGQSKPKVAGRLTRVIGLTLEAVGCQAAVGSHCKVETDSGYIDAEVVGFEGEKIYLMPSEEVTGILPGAKVIPASIQQKITFSMSLLGRVLDARGQPIDGLGRISDANEPSYQSKKLNPLNRKPIKQPLDVGIKAINSILTVGMGQRIGLFAGSGVGKSVLLGMMTRGTAADVIVVGLIGERGREVKEFIDEILGDEGRQRAVVIAAPADNAPLMRLKGCETALSVAEYFRDQGLNVLLLVDSITRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGDGQGSITAFFTVLSEGDDMQDPIADASRAILDGHIVLSRDLADQGHYPAIDIAKSISRVMPAVTSEEHQMQARIVKQLYSSYQNSKDLISIGAYTKGSDAIVDAAIKLKPKMDKFLQQGMSDVINYDDCLNLLASVTSSMRA
>NZ_CP041660.1|WP_143871791.1|2849566_2850007_+|flagellar-export-protein-FliJ
MNKQLMLVADIEKKKEDQLAQKYAQATQDLTQQHEKLAGLEKYQRDYMNTVIESGKQGLSSSGFQRLQSFITQLDKACHQQRDNIQKAEKVVDQRRALWLQQQRKRKSIETVIERQRKIEQLRLDREEQKMFDEYATNQATRRLQG
>NZ_CP041660.1|WP_143871792.1|2850199_2852749_+|hypothetical-protein
MQYIANIPSNIAANVTIEQKRTAAEQTKKATQSTDKGFEAYIYQQHEKNLRQNETQNRKPQNTEKTVEPSASQLKSNNENSAARKADNQTQATKSQQIDAGAVNSEKTDKTATRKQPQNDVNDAKSDTKGIDKESNTKESHTRESSLKENTLKENRALENSLEQSLSTDRHIKNDAKVQGMDTRLIHSDVKKTAEAVATAAGQKQVNDGQKSEESFDLLSFLNKSNSAKVSSSKSAEKPLANEDKNSLDKVDLSTKAQSPAKEGKLGADDILQQVLINPDATQKNASTAAKEESLGGKTGVESLSNRQIKEGMSPKPQNGLDDLLGKGPLKSELNTQKENNGAVAGNPDKALAGGKANTAAIQTQAGEVKAKGQTLIDGKAVNAELAANEKVNSAAVADVAKDAGEKDQAALNANATHKQISEKSQQIAENGLAKASESKTNKKISDELMNQTGVNQTSLTAESKKASAVEAEKPVSTQPLVDKRVNSQTGTQHSLTEKADLGAVEKSLVEGITNDKGSPKGSQEAARSTTAIKETAAIKETTADKNKSAAATSPDVDKTVATAFASAEFQAESIVSEQPAADGKQEVQNKYSGNDKTLLTTKNNEGSDKTVVSKFAESQKLNKSETDAQQEHVKPLETESIIGEQVLGEQLHAEVTQKVNEQKAAADTRVQNTQFTHQQVQHKQESIQAEKVADKQNQMTQLKEQIQLHKPEGATALNDAVKYMMNGRIQAAEIRLDPPELGSMQIKISLNGDQASVSMLVQNPQAKEMLEQTMPKLKEMLEQQGLQMGEANVSQKQEGKEQNASQSGNGGAGGNGQGNGDADESGDEQLVGEQKITNGHLGAVDYYA
>NZ_CP041660.1|WP_143871793.1|2852832_2853372_+|flagellar-basal-body-associated-protein-FliL
MAAEQEELQVEEAGGGKKKLIIIIVAVVLVLVLGGVGYFMFMGGDDSAEAEVSLDEAPAAANNASGGGGNVEIGDAVYVAMPRPFVFNVPGADRDRLVQIKVQLLVRGSQNEETAKKHIPLIEGTLLRVFSGTSADSLGTSAGKEALKTSSLKAVQDELLSIAGRPVIEKVLFTGFVMQ
>NZ_CP041660.1|WP_143871794.1|2853388_2854462_+|flagellar-motor-switch-protein-FliM
MTDLLSQDEIDALLHGVDDVEEEDVEESASRSGSAVSMASEYDFSSQDRIVRGRMPTLEIVNERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKEAWAPVMDVSFEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHICLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVEVNIMAKLLEFELSLEQIMELQAGDVIPVEMPEHLTVFVEDLPTYRAKMGRSKDNLAIKVIEKIKRPASVKSELQMVTRGGRRIDAEAELRELEDFD
>NZ_CP041660.1|WP_143871795.1|2854500_2854902_+|flagellar-motor-switch-protein-FliN
MSDDMDDWAAAMAEQAEAEGAENPADEAQVAELEELTDEKPQITAEEKRKLDTILDIPVTIAMEVGRSKISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKKLK

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Crispr_ID: NZ_CP041660_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_9

2904732-2904859

Orphan

Consensus_repeat	Method
ATTGCAGAATTTGTCGGCGTAAACACCGACCTACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_9

>merge|NZ_CP041660|9|2904732-2904859|CRISPRCasFinder
ATTGCAGAATTTGTCGGCGTAAACACCGACCTACCTAAAGCTCGTAGCTCAAAGCTCAGATGTGGGTCGTCCCTTTAGGGCGACAAATGTTAATTGCAGAATTTGTCGGCGTAAACACCGACCTACCT

>NZ_CP041660|9|9|2904732-2904859|CRISPRCasFinder
ATTGCAGAATTTGTCGGCGTAAACACCGACCTACCT	AAAGCTCGTAGCTCAAAGCTCAGATGTGGGTCGTCCCTTTAGGGCGACAAATGTTA
ATTGCAGAATTTGTCGGCGTAAACACCGACCTACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143871842.1\|2903795_2904530_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181335
NZ_CP041660.1\|WP_143871839.1\|2900769_2901357_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP041660.1\|WP_143871834.1\|2895172_2895388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143871836.1\|2896371_2898309_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP041660.1\|WP_143871849.1\|2912079_2913192_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|237587
NZ_CP041660.1\|WP_143871847.1\|2910311_2911415_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|182729
NZ_CP041660.1\|WP_143871851.1\|2913736_2914156_+\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_CP041660.1\|WP_143871852.1\|2914159_2915137_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP041660.1\|WP_143871844.1\|2907480_2908338_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP041660.1\|WP_143871840.1\|2901444_2901873_+\|DUF4396-domain-containing-protein	unknown	unknown	gnl\|CDD\|379568
NZ_CP041660.1\|WP_143871835.1\|2895470_2896391_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153246
NZ_CP041660.1\|WP_143872961.1\|2903061_2903628_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041660.1\|WP_143871848.1\|2911418_2912069_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP041660.1\|WP_143871837.1\|2898350_2898902_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143871845.1\|2908473_2909730_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|234571
NZ_CP041660.1\|WP_143871846.1\|2909807_2910269_+\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP041660.1\|WP_143871843.1\|2906686_2907481_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP041660.1\|WP_143871850.1\|2913261_2913726_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP041660.1\|WP_143871841.1\|2901869_2903048_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP041660.1\|WP_143871838.1\|2898963_2900355_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143871842.1\|2903795_2904530_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181335	PRK08264, PRK08264, SDR family oxidoreductase.	8.2727e-102
NZ_CP041660.1\|WP_143871839.1\|2900769_2901357_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.41496e-17
NZ_CP041660.1\|WP_143871852.1\|2914159_2915137_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	3.5151e-119
NZ_CP041660.1\|WP_143871836.1\|2896371_2898309_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	7.00733e-36
NZ_CP041660.1\|WP_143871849.1\|2912079_2913192_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP041660.1\|WP_143871847.1\|2910311_2911415_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|182729	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD.	1.1079e-159
NZ_CP041660.1\|WP_143871851.1\|2913736_2914156_+\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	2.546e-55
NZ_CP041660.1\|WP_143871844.1\|2907480_2908338_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.90399e-31
NZ_CP041660.1\|WP_143871840.1\|2901444_2901873_+\|DUF4396-domain-containing-protein	gnl\|CDD\|379568	pfam14342, DUF4396, Domain of unknown function (DUF4396). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 167 and 310 amino acids in length.	2.89613e-35
NZ_CP041660.1\|WP_143871835.1\|2895470_2896391_+\|hypothetical-protein	gnl\|CDD\|153246	cd07984, LPLAT_LABLAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.	2.66672e-18
NZ_CP041660.1\|WP_143872961.1\|2903061_2903628_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.55194e-09
NZ_CP041660.1\|WP_143871848.1\|2911418_2912069_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.62751e-104
NZ_CP041660.1\|WP_143871846.1\|2909807_2910269_+\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	1.45715e-86
NZ_CP041660.1\|WP_143871843.1\|2906686_2907481_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	5.99331e-32
NZ_CP041660.1\|WP_143871850.1\|2913261_2913726_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	3.20483e-88
NZ_CP041660.1\|WP_143871841.1\|2901869_2903048_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	3.38164e-155
NZ_CP041660.1\|WP_143871845.1\|2908473_2909730_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0

>NZ_CP041660.1|WP_143871842.1|2903795_2904530_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSHIIENKVALVTGANRGIGKAIVESFIAHGAKKVYLAVRDPESTVELATQFKDKVVTLKADVSDADSIKTLAEQTKDVDILVNNAGIMQLGSPLDDNAQASLQQQFDVNVFGLMRVASAYEEILAQNKGVLVQLNSIASIKTFADIATYCASKSAAYSITQGLQQKFAAKGVDVLSVHPGPIGTDMGDSAGFEGAPEPSVVAEGIVESLKNGDYHLFPDPVAKQFESAYQGFSDAIITSELAL
>NZ_CP041660.1|WP_143872961.1|2903061_2903628_-|TetR-family-transcriptional-regulator
MDVFWRKGYTGASLSELTQSMGINKPSMYATFGNKEALFVKATSLYIEKIAKPHTQWLFEEGTRLEKRVKNYMLSIVKSQCESDDPKGCYVILCQSEIAGGDMPQAPTELLNEAGQYIQKLLTELFLNDPQAIRLGLNHQASSAALSIATTLRGTASMARAKVTFAELQTVIEHCLKGIGINSDGDKF
>NZ_CP041660.1|WP_143871841.1|2901869_2903048_-|PQQ-dependent-sugar-dehydrogenase
MSNKHRYIANSVFLPALTLLVSCLFSVSIFLKNADAAQSFSSQKHDFYLDEIASGFDTPWGLAFITPNKLILTERDSDIFLLDLKAKNQKQISGHPKIESSGQGGLLDVALPSVKPENYQDKIRLYFTYSKSTEAGLATTLASAELVGQHLINWQDILVTQSANDNTRHFGSRITFDGQGHLFFSIGDRAERDNAQNLSNHAGAIIRLTLDGKTPADNPFVDSKEVLAEIWSYGHRNPQGLVFDKTHKRLWSIEHGPRGGDEINLIEKGKNYGWPLVSQGKEYWGPISVGEEKMPGMQAAKKVYTPSIAPGGLTLYQGKAFPKWQGSLFSGAMKLKHLNRVEIDENGHITSEERLLESLEQRIRAVITGPDGYLYFSSDNGKIYRLRPQNTG
>NZ_CP041660.1|WP_143871840.1|2901444_2901873_+|DUF4396-domain-containing-protein
MGMNWNNKTNWIKSAHNTKWCLLGCAIGDFGTIAYFQFNEHNLSTLSVMLFAMFNGLLTSIMLETIILYRAHFTLKAALKTAFGMSFISMLAMEAAMNLTDYALTGGAILTWWVIPLALLAGFLTPWPYNYWRLERHGKCCH
>NZ_CP041660.1|WP_143871839.1|2900769_2901357_+|helix-turn-helix-domain-containing-protein
MKIYIKNMVCDRCILAVENILQEMQLSYVTVGLGVVDFSNHLGEQLPDLIHTQLSQRLEALGFSLLNNSKSKLIDAVKNSCIDYLKSTIEGEQAQTHVRLSEHINHHVAREYKYLSNLFSEVEGITIEQYFIKLRVEKTKELLVYGELSLAEIASLLGYSSVAHLSGQFKKVTGLTPSYFRSVKDQKLRNALDKL
>NZ_CP041660.1|WP_143871838.1|2898963_2900355_+|hypothetical-protein
MDINNIKRLFGMTYGLVMLAACDSSETIEAEYVGNYDTPPLIQALDAPLTECPERVWASASQNFKQSEVLVIDRPRGIKNAFHWQAIDKSVNNVELEFLDPQWFLLYNFGYYFGKKTVGLNALEISHHLRSDGSTYWKHDVHLLFHELFHYFAQENWLIDSHERGDVYPLHWQPRYLRTKLIYALQEALSNKSDLSEAKYWYRRYLQEHPEEAVVTNVFDNIEGTAEYAGYVMLALAEYGCNISEEQLIKNINDNIIAFDYTLTSNLESYRLGLLSGLLLRERSNENWQVQVENGVPLVGILLKNIPEKYVSYDTELANKISEDVAYENGLLHMKFSPAINTFKNPEYYRLSLSAESLNFFQMSGAYFINNEANINKITADFEGDLMLGGDVIIEANGIQLIEVKNTPCREGFDINQFIFPIHKDEIKFDELERVAFSNSALTFKDLKIDKVNVDGYQWLCIN
>NZ_CP041660.1|WP_143871837.1|2898350_2898902_+|hypothetical-protein
MYKFVSFFTLLFFSVTSSAQVILEDKTIYLSVLEGLEGKQRHYVAGIQFPNRKNLGYLEVGVLDSLNTETEFNGFITLGAGYNWNLYHHKYYDFYLGGGAIAAFQGKCNQNTVDIQKREFCADDKNKDGVYGDTDLLLYPELRLTFNMTKSFVIELNARKYFSVNKDFTPDNAFVGVSFTFEL
>NZ_CP041660.1|WP_143871836.1|2896371_2898309_+|prolyl-oligopeptidase-family-serine-peptidase
MMLLNIRLIIVLTLSSFILSCSTTSFPIFKRIDAPDSYELIPLRKLFANIDTKLGYKISPDGTKLAWVEVIEDRLELKIKDLSTDNTNIIKTPFIDQNFYWGDESRYILFPIYSQQVKESKIALIDTYEREKINTNLLLSNLSGSLRIHRIILQPSVTLVLKRNVLNELPEYYLMELSEGAPQKIDLNEKHIVDLIVKDKKIVARIRQKDNQRFIEKQSNSGFITISECSDINANIKLLSLDSDGFLNYTSNCESDKLQLIRAKNKLYKHYTCNAIEECNSDVAQVVVNPVNGIPYFSLYHEQNSITFNLQNDSAFQKLTNELQGKIKIISMDRDFNRLTLENSSHLGERYYLVDLERNNIAMLSKGQLFDYQSFIKPAQFIQIHNESNTPLYGYYYPAQVQFSEKKSAMILLHGGPEERSYPDYDREAILLSNRGYDVISLNYRGSKGFGHQYQQQAYNNIEVMLNDIESASQWLINVKNVDKSAIGLMGGSYGGYLALLASKYQQNKCIVSINGIYDLYQTALTFQDNPVNFFIRYYGGIDNIRQGKFDEYSPIKYSNYQDNHYLLVQSEYDSKVPFQTAVDFYDLVQANNDVEFIVIKDVHDIRKWYNRLESYRNIEVFLRQCLGGGDAGFEYYLLAKPFYE
>NZ_CP041660.1|WP_143871835.1|2895470_2896391_+|hypothetical-protein
MLAIINKLKCYINKIFSYIFLLPIQYSKKKKRRSKFAHLIVQFIAVALNIKNREACLIYKKGIKSAVTFHYNYSYLANLSVNDIAKEISKVKIINEEYVRTAEVEKRPIILVSIKSGDFYRGFLRLAEITTLNKELNIIKVSGKSDNEDKLYAKLKRYCKRLNIIRFDDDIAKKCFYQLRKNNIAIFMNDMEVRVNKRVTVDFMGKDTHFQCGIAELAVITKSVVVPVVNYKDDKNQHTLKIEEPIDVELLQHEGMAGKVHYITQRLASDMQDWLRSYPEQIHYWDEIADTFYASKDRKVNDVIKY
>NZ_CP041660.1|WP_143871834.1|2895172_2895388_+|hypothetical-protein
MQNLNLNIKKKALGPTLAKGGKTTVETDNPNPNSDIDICYGGSSRICAGGTYDPNTGNAGGAVTYKNDSCC
>NZ_CP041660.1|WP_143871843.1|2906686_2907481_+|transglutaminase-family-protein
MWLKTGCQIAFDINIPTPFMLMLRPRSGAQQWIELEKYILTPSTPIVEFTDIYGNLCQRLIAPVGLFSINTSVQVKTPEVIDIAPGAPFVPVQFLPDAVLSYLLPSRYCESDVLVNVACEITDGYLLGYDQVAAISQWINTNIRYETQINDYLVSATDVYQRRWGVCRDFAHLGIALCRSLCIPARMVVGYLHGLSPMDFHAWFEAYIDGRWYTFDATQQTLKPGYVVIAYGRDAADVAVFNQFGPAIFPISQNVFVEQLGNNC
>NZ_CP041660.1|WP_143871844.1|2907480_2908338_+|transglutaminase-family-protein
MKRYSITHSTHYQYSGFVELGLHYMLLRPREDHELRIESFSLNITPDYNLLWHRDVENNSVAEVSFKQNTAKLTVESEVIIQQFNESPLDFLVADYAVYYPFKYRQGDQVLLQPYMRLTQPEDKNIIQQWLASIWQADEKIQTYTLLKRLAESIHNQFTYRIREEAGVQSPSFTLTHKTGSCRDFAALFIEAARFLGLACRFVSGYLYAPALADMAGATHAWAEVYLPGAGWKGFDPTVGCIVGADHIAVAVARLPESVPPVQGCYTGNQSSVMDVGVWVKLIES
>NZ_CP041660.1|WP_143871845.1|2908473_2909730_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MLTRDMNIADFDPDLWQAIQQETVRQEEHIELIASENYASPRVLEAQGSQLTNKYAEGYPGKRYYGGCEHVDVVEQLAIDRANELFGSDYANVQPHSGSQANGAVFQALLQPGDTVLGMSLAHGGHLTHGAHVNFSGKTYNAVQYGLNEETGEIDYDQVEALALEHKPKMIIGGFSAYSLVVDWARFREIADKVGAYLLVDMAHVAGLIAAGVYPSPVPFADVVTTTTHKTLAGPRGGLIISAKGEETLYKKLNSAVFPGGQGGPLCHVIAAKAVAFKEAMQPEFKSYQEQVVKNAQAMVAVLQERGYKVVSGRTENHLFLVDLIDKDITGKDADAALGRANITVNKNSVPNDPRSPFVTSGLRIGTPSITRRGFKEGEAKELAGWICDVLDNLEDDSVIASVKQKVQDICKKLPVYA
>NZ_CP041660.1|WP_143871846.1|2909807_2910269_+|transcriptional-regulator-NrdR
MHCPFCAAQDTKVIDSRLVAVGHQVRRRRECFECHERFTTFETAELVMPRIIKNDGTREPYNEGKLRTGLMRALEKRPVSTEQIETLITQLQSELRATGEREVESKLLGNILMEKLKEVDEVAYVRFASVYRSFQDIREFGEAIAGLGDKSIK
>NZ_CP041660.1|WP_143871847.1|2910311_2911415_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MSVCTQQDYQYMAQAIRLAEQGLYTTSPNPRVGCVIVYDDKVVGKGFHIKAGGPHAERHALVDAGELAKGACVYVTLEPCSHTGRTSPCADALIAAGVTRVVVGMVDPNPKVSGRGIEKLRQAGIQVVENCLTDACEKLNPGFIKRMQLGKPYVRLKLAASLDGRTAMQSGESQWITSADARRDVQTYRARSCAIISGAGTVLADNPSLNVRISDLNFEYLGEVRQPVRVVIDNQLRLSNELKLFSLPSPVYLVANKKRSGDWPPHVEMLELSQTGQHIDLEECLVELAKREINEVWVEGGAALAGAFMQAGLVDELIIYQAPIFMGENTRGLLDMPNITELKQAVRWQFESHTRVGQDLKLILRAL
>NZ_CP041660.1|WP_143871848.1|2911418_2912069_+|riboflavin-synthase
MFTGIIESVGKIKTINAKSGDFEIVIDTADLDLSDVKLGDSIAVSGVCLTVTQIQPQAFCADVSAETIKRTKLSQLNVGSDVNLEKACTPNTRLGGHIVSGHVDGVGHVVNVYANANATDYWIEAPDSLAHYIAEKGSITVDGISLTVNEVQGAQFRLTIIPHTTEKTAIHDWQSGARVNLEVDVIARYLERLMQAHTAPKGGVTLELLKNSGMIK
>NZ_CP041660.1|WP_143871849.1|2912079_2913192_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MKLNSAAEIIDDIRQGKVVILMDDEDRENEGDLIVAAEHCTPQVINFMATHGRGLICLTLTRERCQQLDLPLMVDRNKAQFGTNFTLSIEAANGVTTGISAADRATTVRAAVARDAKPEDIVQPGHIFPIMAQDGGVLNRAGHTEAACDLARLAGLQAAGVIVEILNEDGTMARRPELEKFAEKHQLKIGTIADLIEYRNNTETTIEKIAECKLPTSFGEFDLMTFRDTIDGQVHFALKNTEIEHEKPTLVRVHVTNILSDLLRSAREPSKGWELSCALKRISEEGGVLVLLGKNETPEELIARVKAYQAEDEGKPARVTSNWRGTSRTVGVGSQILSALNVGKMRLLSSQKKYHSLSGFGLEVVEYVED
>NZ_CP041660.1|WP_143871850.1|2913261_2913726_+|6,7-dimethyl-8-ribityllumazine-synthase
MQVIEGAFPAQGKKFAIVVSRFNSFVVESLVEGAIDTLKRHGLVNDEDITIVRCPGAYELPLVAKKVAESKNYDAIIALGAVIRGGTPHFDFVANECNKGLAQVSLEYSIPLAFGVLTTDSIEQTIERAGTKMGNKGGEAALSALEMVNVLSQL
>NZ_CP041660.1|WP_143871851.1|2913736_2914156_+|transcription-antitermination-factor-NusB
MKPSHRRRARELATQSVYAWQASENRVDTIIDGTLEEVDNKSFDVNFYRQLVQGTVKNAKALDAAYSDYLDRNLEELDMVERAVLRVATYELTHCLEVPYRVVINEAIEIAKTFAADESHRFINGVLDKAVKKIRPHGK
>NZ_CP041660.1|WP_143871852.1|2914159_2915137_+|thiamine-phosphate-kinase
MAEFDIISRFFTFGEKPDSVVLDKGDDCALVRSGNATELLAITTDTLVCGTHFLQDIPPHALAYRCLATNLSDLAAMGAMPRWFSLALSLPKEIAQNQDWLAEFSQGLQVLSAEHNIYLIGGDTTSGPLSVTISAVGQVAENRCLLRKNAKVGDLICVSGTLGDAAGALKIMLDQSTPCDIETRDALFSRFNYPSARVQVGLALLAFSSCAIDISDGLLADLTHILKASNCCATIDIDKLPLSPALVRQFGQQAAQRMSLSGGDDYELCFTIKPSDIDKLRATAEKLDIPLHVIGQIVEGEGEGLKVVQQGQIIEISDMGYQHFA

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Crispr_ID: NZ_CP041660_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_10

2917075-2917167

Orphan

Consensus_repeat	Method
AGCTTCGAGCTTAAATGTAGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041660_10

>merge|NZ_CP041660|10|2917075-2917167|CRISPRCasFinder
AGCTTCGAGCTTAAATGTAGGTCGCGGCTTTAGCCCGACAAAAGATACAAACGACAAGTTTCAAGTTACAAGTTTCGAGCTTAAATGTAGGTC

>NZ_CP041660|10|10|2917075-2917167|CRISPRCasFinder
AGCTTCGAGCTTAAATGTAGGTC	GCGGCTTTAGCCCGACAAAAGATACAAACGACAAGTTTCAAGTTACA
AGTTTCGAGCTTAAATGTAGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143871853.1\|2915126_2915642_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|368021
NZ_CP041660.1\|WP_143871846.1\|2909807_2910269_+\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP041660.1\|WP_143871852.1\|2914159_2915137_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP041660.1\|WP_143871854.1\|2915644_2916481_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP041660.1\|WP_143871856.1\|2917676_2918408_-\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635
NZ_CP041660.1\|WP_143872962.1\|2920642_2921761_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP041660.1\|WP_143871863.1\|2925326_2926307_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225915
NZ_CP041660.1\|WP_143871849.1\|2912079_2913192_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|237587
NZ_CP041660.1\|WP_143871847.1\|2910311_2911415_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|182729
NZ_CP041660.1\|WP_143871860.1\|2922377_2923274_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP041660.1\|WP_143871864.1\|2926586_2927243_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143871859.1\|2921753_2922281_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143871861.1\|2923273_2923939_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223710
NZ_CP041660.1\|WP_143871858.1\|2919044_2920085_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP041660.1\|WP_143871862.1\|2923950_2924757_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143871855.1\|2916556_2916982_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380271
NZ_CP041660.1\|WP_143871848.1\|2911418_2912069_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP041660.1\|WP_143871850.1\|2913261_2913726_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP041660.1\|WP_143871851.1\|2913736_2914156_+\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_CP041660.1\|WP_143871857.1\|2918391_2919042_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544

Protein	Function_ID	Function_description	E-value
NZ_CP041660.1\|WP_143871853.1\|2915126_2915642_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|368021	pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family represents a family of bacterial phosphatidylglycerophosphatases (EC:3.1.3.27), known as PgpA. It appears that bacteria possess several phosphatidylglycerophosphatases, and thus, PgpA is not essential in Escherichia coli.	5.73105e-56
NZ_CP041660.1\|WP_143871846.1\|2909807_2910269_+\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	1.45715e-86
NZ_CP041660.1\|WP_143871852.1\|2914159_2915137_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	3.5151e-119
NZ_CP041660.1\|WP_143871854.1\|2915644_2916481_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	5.55317e-32
NZ_CP041660.1\|WP_143871856.1\|2917676_2918408_-\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	2.60122e-14
NZ_CP041660.1\|WP_143872962.1\|2920642_2921761_+\|hypothetical-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.99142e-47
NZ_CP041660.1\|WP_143871863.1\|2925326_2926307_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225915	COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only].	3.80284e-50
NZ_CP041660.1\|WP_143871849.1\|2912079_2913192_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP041660.1\|WP_143871847.1\|2910311_2911415_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|182729	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD.	1.1079e-159
NZ_CP041660.1\|WP_143871860.1\|2922377_2923274_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	2.78309e-100
NZ_CP041660.1\|WP_143871861.1\|2923273_2923939_+\|HAD-IA-family-hydrolase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	1.21282e-41
NZ_CP041660.1\|WP_143871858.1\|2919044_2920085_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP041660.1\|WP_143871855.1\|2916556_2916982_-\|hypothetical-protein	gnl\|CDD\|380271	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA. A three-gene cassette encoding ImuA, ImuB, and ImuC (""inducible mutagenesis"") is induced by DNA damage, is capable of DNA synthesis across DNA damage lesions, and consequently is associated with mutagenesis. This family, ImuA (previously misnamed SulA in Pseudomonas putida) shows some homology to SulA itself and to RecA. ImuB resembles Y-family polymerases but may be catalytically inactive. ImuC is a C-family polymerase, and catalytically active.	7.98623e-08
NZ_CP041660.1\|WP_143871848.1\|2911418_2912069_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.62751e-104
NZ_CP041660.1\|WP_143871850.1\|2913261_2913726_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	3.20483e-88
NZ_CP041660.1\|WP_143871851.1\|2913736_2914156_+\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	2.546e-55
NZ_CP041660.1\|WP_143871857.1\|2918391_2919042_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.26634e-123

>NZ_CP041660.1|WP_143871855.1|2916556_2916982_-|hypothetical-protein
MKTIISTDKYSKTHLLAVQNNSSEFEQRFWRSIAKLQESKRWLCIIAPSKMPSKSFLREMGVQLDKMLVIHQQKSSAYTTTKKALLAGKCSTVVAWLDSCSNAQHQEIKALATQAKSQIVLIKEEYKTTPIEKRAVRKLSA
>NZ_CP041660.1|WP_143871854.1|2915644_2916481_+|isopenicillin-N-synthase-family-oxygenase
MFEAIDFKAKDAAQAFVSSLKETGFAVLKNHPLNKTLVDNLYQAWLDFYRSAEKYQFAYTQDKQDGYFAKNKAEKAKNATQQDIKEYFHYYPWGQCPDVLKVQTQAYFEQASQLAQTLLNWVENQSPPEVAQAYSQKLSDMIKNSDMTMLRILHYPPMTGDEAPGSIRAAAHEDINLLTILPAASEGGLQVKTLNGEWLDVPAEFGYLIVNTGDMLQEASAHYFPSTTHRVINPSDRIQNTSRISMPLFLHARPDVVLSEQYTAHKYLIERLKELGVY
>NZ_CP041660.1|WP_143871853.1|2915126_2915642_+|phosphatidylglycerophosphatase-A
MLLKYFSIRPELKCLSLKNPIHFLSLGFGSGLAPIAPGTFGSLAAIPVYLLLMFAGMPIYIAATVLFAILGFWFCGYTAQALKTHDHPAIVWDEVVGMLITLFYFPLSYSTVIIGFLYFRVFDIIKPWPIKWLDQKVHGGIGIMLDDMLAGVFAWCALYLTHQYIYDLSSW
>NZ_CP041660.1|WP_143871852.1|2914159_2915137_+|thiamine-phosphate-kinase
MAEFDIISRFFTFGEKPDSVVLDKGDDCALVRSGNATELLAITTDTLVCGTHFLQDIPPHALAYRCLATNLSDLAAMGAMPRWFSLALSLPKEIAQNQDWLAEFSQGLQVLSAEHNIYLIGGDTTSGPLSVTISAVGQVAENRCLLRKNAKVGDLICVSGTLGDAAGALKIMLDQSTPCDIETRDALFSRFNYPSARVQVGLALLAFSSCAIDISDGLLADLTHILKASNCCATIDIDKLPLSPALVRQFGQQAAQRMSLSGGDDYELCFTIKPSDIDKLRATAEKLDIPLHVIGQIVEGEGEGLKVVQQGQIIEISDMGYQHFA
>NZ_CP041660.1|WP_143871851.1|2913736_2914156_+|transcription-antitermination-factor-NusB
MKPSHRRRARELATQSVYAWQASENRVDTIIDGTLEEVDNKSFDVNFYRQLVQGTVKNAKALDAAYSDYLDRNLEELDMVERAVLRVATYELTHCLEVPYRVVINEAIEIAKTFAADESHRFINGVLDKAVKKIRPHGK
>NZ_CP041660.1|WP_143871850.1|2913261_2913726_+|6,7-dimethyl-8-ribityllumazine-synthase
MQVIEGAFPAQGKKFAIVVSRFNSFVVESLVEGAIDTLKRHGLVNDEDITIVRCPGAYELPLVAKKVAESKNYDAIIALGAVIRGGTPHFDFVANECNKGLAQVSLEYSIPLAFGVLTTDSIEQTIERAGTKMGNKGGEAALSALEMVNVLSQL
>NZ_CP041660.1|WP_143871849.1|2912079_2913192_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MKLNSAAEIIDDIRQGKVVILMDDEDRENEGDLIVAAEHCTPQVINFMATHGRGLICLTLTRERCQQLDLPLMVDRNKAQFGTNFTLSIEAANGVTTGISAADRATTVRAAVARDAKPEDIVQPGHIFPIMAQDGGVLNRAGHTEAACDLARLAGLQAAGVIVEILNEDGTMARRPELEKFAEKHQLKIGTIADLIEYRNNTETTIEKIAECKLPTSFGEFDLMTFRDTIDGQVHFALKNTEIEHEKPTLVRVHVTNILSDLLRSAREPSKGWELSCALKRISEEGGVLVLLGKNETPEELIARVKAYQAEDEGKPARVTSNWRGTSRTVGVGSQILSALNVGKMRLLSSQKKYHSLSGFGLEVVEYVED
>NZ_CP041660.1|WP_143871848.1|2911418_2912069_+|riboflavin-synthase
MFTGIIESVGKIKTINAKSGDFEIVIDTADLDLSDVKLGDSIAVSGVCLTVTQIQPQAFCADVSAETIKRTKLSQLNVGSDVNLEKACTPNTRLGGHIVSGHVDGVGHVVNVYANANATDYWIEAPDSLAHYIAEKGSITVDGISLTVNEVQGAQFRLTIIPHTTEKTAIHDWQSGARVNLEVDVIARYLERLMQAHTAPKGGVTLELLKNSGMIK
>NZ_CP041660.1|WP_143871847.1|2910311_2911415_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MSVCTQQDYQYMAQAIRLAEQGLYTTSPNPRVGCVIVYDDKVVGKGFHIKAGGPHAERHALVDAGELAKGACVYVTLEPCSHTGRTSPCADALIAAGVTRVVVGMVDPNPKVSGRGIEKLRQAGIQVVENCLTDACEKLNPGFIKRMQLGKPYVRLKLAASLDGRTAMQSGESQWITSADARRDVQTYRARSCAIISGAGTVLADNPSLNVRISDLNFEYLGEVRQPVRVVIDNQLRLSNELKLFSLPSPVYLVANKKRSGDWPPHVEMLELSQTGQHIDLEECLVELAKREINEVWVEGGAALAGAFMQAGLVDELIIYQAPIFMGENTRGLLDMPNITELKQAVRWQFESHTRVGQDLKLILRAL
>NZ_CP041660.1|WP_143871846.1|2909807_2910269_+|transcriptional-regulator-NrdR
MHCPFCAAQDTKVIDSRLVAVGHQVRRRRECFECHERFTTFETAELVMPRIIKNDGTREPYNEGKLRTGLMRALEKRPVSTEQIETLITQLQSELRATGEREVESKLLGNILMEKLKEVDEVAYVRFASVYRSFQDIREFGEAIAGLGDKSIK
>NZ_CP041660.1|WP_143871856.1|2917676_2918408_-|DUF3108-domain-containing-protein
MLKKISGYSLVCLLSCLFTYNAYAQNAKPDVLTPFNAKYKVSKGRLNLGTAKRQLSQIGENRYTFSYFSDLSLLILSDHRRETSELTIQNNLVTPIRYLFKREGTGSDKSTTLEFTKNAVIDSENEKTLDIADGIHWFDEVSYQLQLKLDLAAGKTEMSYYLVNHKKRDKLYVFKVVAEEVLEVPAGKINTVKLQRIREDDSDRLTEFWLAPDLGYLLVRIRQERGGSEVADAQLEKFVFTPL
>NZ_CP041660.1|WP_143871857.1|2918391_2919042_-|phosphoribosylglycinamide-formyltransferase
MTKNLVVLISGSGSNLQAIIDATKSGQIDGRICAVISNKADVYGIERAKKAGIKTHVLNHKAYASREAYDQDLAQVIETYQPDLVILAGFMRILTANFVQKFVGKMLNIHPSLLPKYQGLNTHQRALDAKDTEHGVSVHFVTEELDGGPVVCQACIKVLSNDTAETLAQRIHAEEHIIYPKVVEWFCQDRLTMRNGNAWFDNELLPPTGIRYAEKN
>NZ_CP041660.1|WP_143871858.1|2919044_2920085_-|phosphoribosylformylglycinamidine-cyclo-ligase
MAEQKTTLSYKDAGVDIDAGNELVDRIKGVTKATRRPEVMGNLGGFGALCKLPEKYKKPLLVSGTDGVGTKLRLAIDLKYHDTVGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDIAASVVTGIGEGCRQSNCALIGGETAEMPGMYEANDYDLAGFCVGVVEEADVIDGSRVQPGNKLIALASSGPHSNGYSLIRKIIEVSNADLDQPLDGKPLKDHLMEPTRIYVKSVLKLLESVKVNAITHITGGGFWENIPRVLPKSTKAVIDDSSWQWPAVFNWLQQAGNVEKHEMLRTFNCGVGLILSVHEDDAEAALVSLRKSGEKAWIIGHVAEAAEQEAQVELV
>NZ_CP041660.1|WP_143872962.1|2920642_2921761_+|hypothetical-protein
MQLQAMPVYLFEEGHLKFNYLLFHAFYAVLEGAIMIFICTRMLRMGLIGDELKKDIEKRLEQPGRVKLSGSVNTFNNIKILNQYNKLFNAIRQLTDEFQKTSDLLHNESGDLKSSFSHLSAMQKQGQQHTDSIASATSQMSKTVNEIAHRAVEANDQVHATLDAVANAEQKVDKSKSTINEFERVVRKTSQEITALSESCSEISGVLESIQAIAEQTNLLALNAAIESARAGEHGRGFAVVADEVRQLSFRTKESTAKIAGIMEILLNKSRSSVEAMNSSLDKLDFILVSSDELAVEIKAAAGSVSQVAHNIDMVATATEEQATAAESVAHSANEVKTIADKETSELTNISTVAEHVSNLAEKLKKALAKFD
>NZ_CP041660.1|WP_143871859.1|2921753_2922281_+|hypothetical-protein
MINKLFTLLLLIWVCLTAGAFYYFSQPKLQLFDPNSRFQNIMHSDNYVSLLHKQLALNARPTVIHVTDSNCSCNVLTQAHIVDLDKQLAALNFQIHAVDIKELKSLIPAAPAVLIFSKMRDLLYAGPYSSGYLCNKDNSLVDLALQQANYAIENNLKLEPFIVSQGQGCFCYPEK
>NZ_CP041660.1|WP_143871860.1|2922377_2923274_+|D-hexose-6-phosphate-mutarotase
MSIHELIKPFSQVELTDANTLFGEKHEALPLIKIETEVCRAIIAIQGAHLIEFEVKGKAPLLWVSPKVAYKQNKAIRGGVPICFPWFGENQFDKSKPSHGFVRASNWQLKEVQASDQSAKLKFAFSSNEQTKALYPYDFDAEYTISLSDKVELELSCKNLSSEIMPVSFALHSYHPIEDLATVSVTGLHNTTFLDNTMNYQAHIQQGPVTFPSEIDRIYLNVASEQVIQTATPIALRSDSCNSAIVWNPGPAKAASMNDLGEENYTRFVCVERGNAFANSWYLQPAESKSAKLDICYA
>NZ_CP041660.1|WP_143871861.1|2923273_2923939_+|HAD-IA-family-hydrolase
MNKLQALLIDHDGTLVDSEPAQHQIWQRILRDFGIEFSFDEFIPRIGIPGEMTAAYLVDKYALGISPSELAVVKEKETQAYLEQQAFPLMPGILAILQWAKSADVNLRVAIVSGAERASVLRTIKQHALDEFVDLVVAGGDTERSKPHPEPYLKAINQLKVAVQNCCAIEDSCGGIQSAKGAGLRCLAIQHVFTDVQTLKRADRLFSSHQEILAALKRNMT
>NZ_CP041660.1|WP_143871862.1|2923950_2924757_-|amino-acid-ABC-transporter-substrate-binding-protein
MKQVLDLFILLILFFSAPLSALPNFGEANVLKVPYLQNDYFSDVLKLALKKTRDTHGPYILIKKEWHGPKQRMRQLLAKNRYIRILWSTTSEQREKQLRPIKFSLLKKLNNYRFLLIHKGEQQRFNHVKTIADLRKFTAISGAHWQDTEIFKRNKLPVATSIDTDDLVKMFNSRRGDYFARGAYEVWHELTQPEYSAFELEQNLLLKYNSDYYFFVNHTDDELAQRLEAGLKKAAEDGSFDALFFSIPSFKQGWDAVQNNQRRIIELP
>NZ_CP041660.1|WP_143871863.1|2925326_2926307_+|FAD-dependent-oxidoreductase
MKVLVVGAGMAGAACAYTLTQAGCSVSVMEKNKHVGGRMASTQMAWSNFDLGAQYFTARDPVFIRQVTRWLKDSVVAAWDIQPHLIDKLGIHPSPDNTKRYFGTPLAQSPIESLLADCNVHLQQNIESLHKRSQGWFAQLSQHNQSGPYDYVVLAIPAPDVVSLLPQNIDLKVFPKFDAYATQVVVLSLQKAIRTEVEWSFVKDRAIDWLGQVNAKYNRNSQQQAWLMHFTPEATDMYRYNDDACFIRLAQLQLEQIFSQREPCQVVDSFSYLYPNARIKLLGYKEQYWLDAQQNLAACGDGFCGGRVEGAFVSGLALARKLLSVH
>NZ_CP041660.1|WP_143871864.1|2926586_2927243_-|hypothetical-protein
MNSENVKPNDPEQAKNWQTLYQKSCQQTSVPPQLKQQIIRNLQKKKTAQKNIKPWLALAASFVVAVLMLQVYQSKPMFQQIQPQVELIELELLQEITETQNKPEFIVNIEKRLANYQQQQIAINNAFKNQMLRLQSSYLNKPDALLYARYAVLKQENEQLILSLCDNKTLQVLKSSGLNKKAQKSWLNRLQPYQTVQILLSDAGQIAGILPSQIKNCS

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Crispr_ID: NZ_CP041660_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041660_11

3748443-3748597

Orphan

Consensus_repeat	Method
CTGGCTGGCTTGGTTTTGCTGCT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP041660_11

>merge|NZ_CP041660|11|3748443-3748597|CRISPRCasFinder
TTGGGTAAATTGGTTTAGCTGCTCACTTTGCCGCATTACAAAAGTTTGGTTTGCTAAACTGCTTAGCTGGCTGGCTTGGTTTTGCTGCTGCGCCGGTTGTATAACAAGATCAAGCGGAGCTATTAGGGTTAACTGGCTGGCTTGGTTTTGCTGCT

>NZ_CP041660|11|11|3748443-3748597|CRISPRCasFinder
TTGGGTAAATTGGTTTAGCTGCT	CACTTTGCCGCATTACAAAAGTTTGGTTTGCTAAACTGCTTAG
CTGGCTGGCTTGGTTTTGCTGCT	GCGCCGGTTGTATAACAAGATCAAGCGGAGCTATTAGGGTTAA
CTGGCTGGCTTGGTTTTGCTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041660.1\|WP_143872503.1\|3747456_3747762_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872508.1\|3750828_3752904_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872501.1\|3745318_3746479_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369572
NZ_CP041660.1\|WP_143872514.1\|3763851_3764049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872512.1\|3761226_3761820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872513.1\|3761819_3763841_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366329
NZ_CP041660.1\|WP_143872509.1\|3752981_3753731_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872499.1\|3742437_3743301_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872498.1\|3741054_3742422_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872515.1\|3764066_3764438_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872496.1\|3739444_3740419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872511.1\|3760639_3761230_-\|DUF2163-domain-containing-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872510.1\|3753748_3760636_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236304
NZ_CP041660.1\|WP_143872507.1\|3750197_3750887_-\|DUF4376-domain-containing-protein	unknown	unknown	gnl\|CDD\|373004
NZ_CP041660.1\|WP_143872502.1\|3746668_3747100_+\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|224442
NZ_CP041660.1\|WP_143872504.1\|3747775_3748171_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872487.1\|3739025_3739454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872500.1\|3743303_3744452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872497.1\|3740470_3740983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041660.1\|WP_143872506.1\|3749684_3750128_-\|hypothetical-protein	unknown	unknown	unknown

>NZ_CP041660.1|WP_143872504.1|3747775_3748171_-|hypothetical-protein
MAHYTHSKVKRNGYQYIKDNGDLVVILKGPLKADNWATTQSKILAQSAIATGDMFLTDVGDDLQFTSNPKSGVDPDLSAVNTDDIAAAILDTVNQEVLIVQDIVDKDILNADGDTITIPGLSVFSRELSLI
>NZ_CP041660.1|WP_143872503.1|3747456_3747762_-|hypothetical-protein
MALTINVYCGQADIAEIAVNDENGPLDFTAAGITKVSVVIPGLLTADSSTNAVNFKTGQVDLQLGLITETNCMWNGRLVEHRAENDEGRTLIDDIIFNFKY
>NZ_CP041660.1|WP_143872502.1|3746668_3747100_+|thermonuclease-family-protein
MRIFVTIMLIAICMDSFAKTYGNITVSRVTSIYDGDTFRVDIDSWPDVIGKRVPIRVNGVDTPEIRGKCENEKQLARKAKQFTVNQLRSAQKIELKNIRRGKYFRIVADVYVDSVNISELLISNNLAVRYDGKRTKKNWCEQQ
>NZ_CP041660.1|WP_143872501.1|3745318_3746479_+|hypothetical-protein
MPSRIKNFKLFKQALNLCKKPEFYFVVLLAISILLPFIELFQASIVFGFLSSIPALLFIYKRHGKLSGLISSFLVPLIYLPYILGLYSWFYTHTGLLYNQVQVHDFFSALYFSVVTWTTLGYGDFQPSEHIRLWAAGQAIFGYLFMSIYVAILFAAITKFSEEKTNNKAKLRGLMLMLKYTNKVYGFFITSIDPKISSPEINRITSPKIELLKKELQEFVLVHSMRLDLSFIEDFENLLLVLERLNKKSLVFCHLGHNSNGSYIVQPLAQQPVQINNGITDIAIDDPYTEVNETLDIIHRFEVRYPFAFKSGDLKKLYTPNLNKDNWYKYCNIVGIHEQEKYSGTAKNTVFVLDPIAFKKGFESDDILASMAKHKTKLKTFFEDRS
>NZ_CP041660.1|WP_143872500.1|3743303_3744452_-|hypothetical-protein
MKRNLYHYDAFGNALGNSIVEGMSAEKDLTAAEQKAIEDRANKLINLDKLGNIDEPMADIAKSTTAGAEKESTNSINKTGQAQRDKFDADFEVAQVVRSQKESQRRSDTVSYKQNLDADLSAKKVSVPLVDEWVYQNTFKPEIALPDMLSNGFDLEGSILLNTEWVRDPVLNDPRMLKTENLTSAGELYQKLNNTRYAETTSTSDFENVVLSMLGGAADSNVPATQLLNTGLVSKGDLTYYATLVDKRSFSSLFMEPASQLPNSWDINSETNMDSSRSLKRGVVSAVDALSTGAHKYANVSRQIALGNDRVTTIDFYRDSTGVNHADVSGHFKYSLNPAPGYYPKEHVNQAVYLSPLQAAYRIGIPESGNGNPYIRPRGLFE
>NZ_CP041660.1|WP_143872499.1|3742437_3743301_-|hypothetical-protein
MYKLMKVVTLLLSLLLASGCSDYKDKNLEFAEQAETAVAFYSRGDVYSAKRLAETLLKEYPERFEPYFMVAIFNTAQIQPNKNLQELDENTQKIVRASVLLGRKGLDVYKSIDNSGKQRNLRTFMELNGFSYLISYAILLYDFGFFEESIAVYERYYDVSKYVEHPQYRYYIIQYADALAYAGRLEEANAIYIEAFEKNGNDLAMLESYIQFIADHGGLERATKFALSYMQNNGKSGRVMYALCGVYEQMKDREMSRNCYSELVEYSKSNMVLPEQLEHAKQVLDQS
>NZ_CP041660.1|WP_143872498.1|3741054_3742422_-|hypothetical-protein
MIAFGNALGNSIVEGMKGDGSSKAAAKIQEIQNSDADDTTKKLAIQKVYEDEGVSFEDISDDIGSSGGSDKRGFSGIHGAYDKDGNVHFTRYKDGNAMSDIFRGRIDGTFDTAKQIHSSFLNWAGNDLSTSGSALGISSMMYHHRIDTQQNALAISSAERQAIYESRMRRVDLGRPTGGIIDMNDSATRMAFARNEGFKTTQQLQSTAINIMTAVATVPLLGGVSVLAGRGLVSLGRASMNLVDDVGRHAYSQFQAYGWRGAGGTQLNGLALNGTRGLNAVRLGQVNYTGFAATLNNGLGALARNPYIKPVDFGAGILSGSLNAGLERMYNPNAGIDDLAISFGSGFVGGFGANSTTRLLNSKGVVGSAFIGGFGGGALSKFSEQLMTGEGFNANDILYSGVISSLTAGVWAPKYQFTLQNDKFNRFFPQQELQRVLDNGSSWFLGKAYNNGVSQ
>NZ_CP041660.1|WP_143872497.1|3740470_3740983_-|hypothetical-protein
MNRNLIAIASTTGLMIYSLSIENEWEFDALSAFFALLMWWTAWSSYRHVKKQKITLSKSGIDVLKNGEHSWEEVKMVKQEPYQESRAYHSFFPGYIIHFTDGKTYKVQQTIEGYTELYRQLYLRKIPGTEKALYLYDTTVEGENGAWDFLCDSVYYPEKDIIKKEKLKPV
>NZ_CP041660.1|WP_143872496.1|3739444_3740419_-|hypothetical-protein
MSAEKDLTAAEQKAINDRANKLINLDKLGNIDEPMADIAKSTTAGAEKESTNSINKTGQAQRDKFDADFEVLQIARSQKESMRREHTVAERQRIDADFKAYEEQYKDYRQNSDLANSEWIQKNTLIPDLELDIAKYTPWVDLGMDTTRMDQGIDLESSILNDSSIDWMSVENSGFTFAVGSSISGDAGIGGAGAAGIFFNMDFSRQEVSFGRYWSAQGGATVGVPGVDAGIEFTLFNTSDWASTMEGMYNASGGQVAALFSGTVEAITTMPSLGQKSHTGIQLTLGLGTPTIEGHTQFGYGAPISPTTLKYREIPGYIWEKIWD
>NZ_CP041660.1|WP_143872487.1|3739025_3739454_-|hypothetical-protein
MGLEMTNFSLHKVLFICLWVVACVPNLDPYRNVLNGISSESKFWLYSDLNELKTGGRPFKQGLLGNTFYSCMEVATIRYNVGHTTVKYYLKIEGVEDNYYFTVAGNGAQIHFAEMWDGYSKYGYTATRPLLDFNCLISDLGQ
>NZ_CP041660.1|WP_143872506.1|3749684_3750128_-|hypothetical-protein
MKNYLLAATSLLGYLLCGLVLLGVNIPILHPDTVLNAVFKQRFELIFIDISAVYLVQSYFALLVVGAFTRGGFGTYCAQVLYQWDVLIASICHGTKNRSISGLVGERALSGSLRWLAAEAVIDFIFMWDESHCKRTFYWERRMGFVA
>NZ_CP041660.1|WP_143872507.1|3750197_3750887_-|DUF4376-domain-containing-protein
MVTLKCLARPLLRQNIGATNMQFISNLFQTQTEDGDVVEKQRPQCETQEALIAVINKHYGKKNHLVNLFAQFYINHLQWSVWDEYKAAFAEYEAEKLRIEQENADNIEDEEYQVQVPPVEPELQPVPNLSVEDVLAQAPFADVIQQKKKAIRSTEIENIVVVVDDMQFDGDETAQTRMARAIVALDAAGQTETNWKLADNQFALVSKTQLAQALALAGQAQTDIWLAHG
>NZ_CP041660.1|WP_143872508.1|3750828_3752904_-|hypothetical-protein
MIHRQDLCILESFDVNITQSGLPLYPYGNVQYGGTWSGIALADNLVAQGYSAYHVGDTVTKGKGFLPDLNNAEHVKFLQNKDNNCYSDNGDIIQRQFRIRTIAGLEGAWRLTEVKTTKSSGYGLRFRTSPSKFVRPQGIKTTPPSWGLEYTDAVYYNKTTALENSPTKDRADDSHYVVQWGSQETSNMVAHNGNCWAIPICLVQRRNKGAYHLTYNVAGSDTLTANVAQGGFNFDNGRKWYNSNTYQPVSLSDCFNVVSGSAEGVSGLGRIGTVSGRPDGKFYDVIYASDVDDLRKSALKKSAHDIHKEYKDRVSAGSTLRGREAQPFTKPLATYTLAYDTNYTNVRFQTALSGGNTRIQYNALSGDEPLSKLAAYDYVFIGGKKYTVIQIDPGNKEVTVLGVVDVSGYTLEGSASGWNVYSGGMPVLITYKVPYFQEEPTWTDIICTPSVFEATFPEGSAGQWIPQLTGPGTQVWNLNRKSIQAADVLNLASSDNGVNWGVSGYSSGSNTMNALKASGEPNIEIPDTYIYLLTYKTKGRFTSFTARDLNLTEKSEVTADTSAFTWNLGQSILGKVQTNVAHPAYGDFPWLQSVPAYGQRALDSSALFTHKHADIGSITGASPAIKYFSYVTNRFGNYHLDIEFNEMVWDGTNYGDEQVFYSIDSLSLRTNINGDAEMFGTATVETEYWSY
>NZ_CP041660.1|WP_143872509.1|3752981_3753731_-|hypothetical-protein
MIKLTSVDLTQDSPIVSVNDAIDLSTLRAGWSLHVTGADLPLEIQSGSNQQITLVAPYTGVSISGREAAIVQTSAPLNAAIDNVNELGQWAKSVFNKQNELYSTEQETVDITDSNGVTRTYSTAQRVTNLADQAQSLIGSLGLPTKAEFEARHEGVYAGSGFDQWGKHSNSAGEASVNEGLWTVPASATYANGFLLGYQSESSSGLGSSKTNHPIAYLAACIINLNGSAGLYGYLDGRSEVKLPPRRMV
>NZ_CP041660.1|WP_143872510.1|3753748_3760636_-|hypothetical-protein
MADFWTILSIVSAVFSVHTSIKAKNAAKKAAKQNKSAGFQVNRFGTDEPIPVVVGKFKVAPIITYQSVVDVPGDKNGGIDNEVWYGSMVFSVGKCGRVEKIFFDDFDMANKFKYANWQEMDGNINEGVVSEINPGYWIRWYVGQHLNSNGDNWDEGDGTKYFYPTASEEFDITPDSGLPWWLGYDGTSQIYWSPIDKYIDPLVTPIDPGDDFSNMRYEGLRAAHAWLIMDGEYTRYPQGVPEFKVVMEGYEFMSLATDTPTHYPNFADVIYWYLTNEEVGMGRPESELDKAAFAEMSQFMNTLVPTPDGDMTLMRCNGVIDTGKPIFSNIETMLHNCHGRPVDGINGFRIEIMREKPVVMDLHIDDFKDGINVSSNSINDKYNQVIVRYRDEQLGWEVNEVVFPPENSELHEQWLAEDNNIHNRLEEDLDFVTNQHQALQWAETTARTSREFEIVEGAIGAKGWKLEELDVISITHPLRGWDKKPFYVDEITLADDSVELVLIEYQPTNYAWHDKTNAVVYPDTNFTPIEIETPENVSVNYNDKKELVVTWDKPNSLVNFYRFSLYDENDNVLKTERVFSNNYTLQNLNSGAYKIQLETVNPKGTSDTVTLSFEIGVPQAPTLELIAGNLEFTVIAHIQGGYLGTAFELLVNHENEFETAENLGTGSGHWIVSGRKSNTQYFVWVRVTTPAGQSDWANASVTTTHDPSDIIDLIENNGGLPFNAINPQTRDVINQLGVEVGTNIPNLITEINENLSAHDTLITDVDNKIDSQVAQMQTDLDNAIQTTNTDFSQQISLIDQKLEDEVLQIESALSGTNQFIVDETQRLDNAFQLTHSAIEETENALQTTLGAVSEAILTDRDNIARVLGLQADITNINNTLSVALTDIQQTASKIELTALRTELKGDINNALFGDLSEQLNVALGDIEGRIDLVELSVSADAIQSQVDAILLAKDYATVSHVSSVIDSLGITNFVTQTDFNNQISRINAAEEVLHSNLFKRSLTSFATVADETQSLGERLLAAEAAKTLFEAGTETALGSLAYANEQTKTATELNSAEIESTKELIALTNNGLALAYQAINVTSNDIKQAANELTQFKTETGDNLSTVTNSIQSVSNAQSATASELTQFKTETGDNLSTVTNSIQSVSDAQGATASELTQFKTETGDNLSTVTNSIQSVSDAQSSTATELTQFKTETGDNLSTVTNSIQSVSDAQSSTATELTQFKTETGNSFSTVNNSIQSVSDAQSATANELTQFKTETGDNLSTVSNSIQSVSDAQSATANELTQFKTETGDNLSTVNNSIQSVSNAQSATANELTQFKTETGNSFSTVNNSIQSVSNAQSSTASELTQFKTETGNSFSTVNNSIQSVSNAQSSTANELTQFKAETGDNFTAVNSSIQAASNAQSATANTLFTMALGVSGAETAQTTEQLLAKQAADILDQADQDAQMQAFAAVTDALNASVSENLAEIEKTSILFAQTQSGLSTAYERINIVSNAQQNTASALTQYKVEAQTSINEAQANAVSEAVEYTNASVGYCVIDDVISGHTDKSACEDAGGTWERLPLAEAQKKVTVSFEKPNGDIVTGSAGSFLQALTNDVGELSLRAFFGLDQNGRVSGLVVTDTEGNQSNASIELLGDRVSIVKPDTLEPIFVFDTETERAQFFGELVLGDNYPVRSEQDIRALDGEKGDKGDKGDKGDQGDPGQSVTVTENSPGVYTITGANGSVVVRDGQNAPVPELHDLGNGNYSMTVDGETIEWHDGEAGQDGQDGYTPQLGVDYFYNGRFYSVIYKAALSQPSTPSGGSFNGTNETMPTGWSDAPVYVNGQITYASRAIYTQNPNTGAWSHSGWSVPKAHVVKGDKGDKGDPGQSVTVTETSPGVYTITGANGSVVVRDGQNAPVPELYDFGNGNYAMTVDGETIEWHDGEAGQDGQDGYTPQLGVDYFYNGRFYSVIYKAALSQPSTPSGGGFNGTNETMPTGWSDAPVYVNGQITYASRAIYTQNPNTGVWSHSGWSVPKAHVVKGDKGDQGPSGQDGQNGQDGADGADGSRGAGRYETGTSTGVWSNTTATNATPNQTPVEGDVVTIYKTTEPDTQTTKIYQSGSWSNFALHIHGSALIEGTVVADEIRANSVVGENATFAGNFFADKITGDVVEMDAFQIPSGPTLNHTNEVLICEFEVDTESFDRTILASYPPINFLGFNEDKQNPRVLSELRYVEEGSATETTVSNSNMYSNSSKSHALTNIPADSTKRTYRWYSRKVDSGGSGTPYVFGVMHILSFKTANTVQENKIRFVNN
>NZ_CP041660.1|WP_143872511.1|3760639_3761230_-|DUF2163-domain-containing-protein
MKTYPQAVEDMIASGHVKHAYLLYVDFEIPLSFTNAGFDIEADGVTYYSSDILQGVDRLSKQASLTVTEIKLAFSLKNQQMVSIAFSKNWQNRNVQINRVFLGEQNEVIHNENVWKGKTTERSDSDQELLITYTAKNIFGAFETTNSWRTTLASHHRRHPTDDCFKYAHKAQEVQYWGGKGNRINKTESNDSLGVK
>NZ_CP041660.1|WP_143872512.1|3761226_3761820_-|hypothetical-protein
MSAILNQFCRSIELKSNTPNTFFESQSLHIETWSIPSHRWEVEYKSNPINGTENQRKMWVFLNSLKSGSVEFDWEIPIHSVPQGSAHSNAMVFQDYNAGVTEFRLLGTLGDNFLIAGDLLKFSNHNKVYMVVEDVSGTNPIVKVNCPLKHAVTSSTIVITRNVAFKMILKPNTQIVSYSRSVGSFSEPFSAQFIEKL
>NZ_CP041660.1|WP_143872513.1|3761819_3763841_-|hypothetical-protein
MGTLATLTIDLVGQSAKLRADLAKASKQTKSWSEKTRSFVNTAGKAFAAMGVTAVTAWAAIYVETSKTADLLAKTSDKLGILPEKLQALQHAGEQTGVGVETTNMALQRMVRRVAEAGQGTGEAVGALKELNLNATELAQMSPDEQFKAIAEAMSGVSNQGDKVRLAMKLFDSEGVSLVNTLDLGREGLNAMEQEINDLGIAMDRLSLAKIEMANDAFDKATKSTSSFGNALTTSTAPIVGALSDMFTQAAMEAGGFGNIAQNVMKATVTSIGFVSDAGRGLKVVFMLIRQAVAELANEIIQLGTTGSKVGAALAEFFGFESSTINHINKFAESFSGTTERLKKELQDTVAEPMPSEKIKAWFDDVQQKFEYEAQKIADDKKNNINLGATISTSTSDDSKDNKSDERLVESARNRYQQIYDAKLLQEERLQELEERKYERLQEEMEREIELLRSKNLATAEIESNYRIAKEQAEEQHQQKIADIEKNRQLQQAQQRVVELQNYSQLFDGMAGITASFKGEQSGMYRAMFAASKAFSVAESIIKIQQGIANAASLPWPQNLAAISSTVATTAGVISTIQGTNLQGMAHSGIDTIPREGTWLLDKGERVYTQDSARQLDEMYNATVTTNNTPVNITLNYDIKTNSAKDFRQVLMENNQYVFNAVESVMNKKGRRL
>NZ_CP041660.1|WP_143872514.1|3763851_3764049_-|hypothetical-protein
MGCTLQELTEKLPPEELELRLVHQMNKLGYSYDQTKRIEAQRKAKEAERNAFLQTCPWNKNNRTQ
>NZ_CP041660.1|WP_143872515.1|3764066_3764438_-|hypothetical-protein
MITLTTILAGEIARTKRTFNVDGIGELELTKLPVAQQKLAAQAMAKKPKTDKEAEEVEKVILNSVYQMLSGETNEQEAEKLLDSLDEVQISRIFSTGYYWADLTVKNLEQTEKNSQSSPKSEP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041660_4	4.1\|865615\|41\|NZ_CP041660\|CRISPRCasFinder	865615-865655	41	NZ_CP041660.1	863998-864038	0	1.0
NZ_CP041660_4	4.1\|865615\|41\|NZ_CP041660\|CRISPRCasFinder	865615-865655	41	NZ_CP041660.1	864062-864102	0	1.0
NZ_CP041660_4	4.1\|865615\|41\|NZ_CP041660\|CRISPRCasFinder	865615-865655	41	NZ_CP041660.1	864190-864230	0	1.0
NZ_CP041660_4	4.1\|865615\|41\|NZ_CP041660\|CRISPRCasFinder	865615-865655	41	NZ_CP041660.1	864126-864166	1	0.976
NZ_CP041660_4	4.1\|865615\|41\|NZ_CP041660\|CRISPRCasFinder	865615-865655	41	NZ_CP041660.1	864254-864294	1	0.976
NZ_CP041660_4	4.1\|865615\|41\|NZ_CP041660\|CRISPRCasFinder	865615-865655	41	NZ_CP041660.1	863934-863974	2	0.951
NZ_CP041660_8	8.1\|2843864\|48\|NZ_CP041660\|CRISPRCasFinder	2843864-2843911	48	NZ_CP041660.1	2843587-2843634	2	0.958

1. spacer 4.1|865615|41|NZ_CP041660|CRISPRCasFinder matches to position: 863998-864038, mismatch: 0, identity: 1.0

ttcgagctaccagctacaagtttcgccaacattgtaggtcg	CRISPR spacer
ttcgagctaccagctacaagtttcgccaacattgtaggtcg	Protospacer
*****************************************

2. spacer 4.1|865615|41|NZ_CP041660|CRISPRCasFinder matches to position: 864062-864102, mismatch: 0, identity: 1.0

ttcgagctaccagctacaagtttcgccaacattgtaggtcg	CRISPR spacer
ttcgagctaccagctacaagtttcgccaacattgtaggtcg	Protospacer
*****************************************

3. spacer 4.1|865615|41|NZ_CP041660|CRISPRCasFinder matches to position: 864190-864230, mismatch: 0, identity: 1.0

ttcgagctaccagctacaagtttcgccaacattgtaggtcg	CRISPR spacer
ttcgagctaccagctacaagtttcgccaacattgtaggtcg	Protospacer
*****************************************

4. spacer 4.1|865615|41|NZ_CP041660|CRISPRCasFinder matches to position: 864126-864166, mismatch: 1, identity: 0.976

ttcgagctaccagctacaagtttcgccaacattgtaggtcg	CRISPR spacer
ttcgagctatcagctacaagtttcgccaacattgtaggtcg	Protospacer
*********.*******************************

5. spacer 4.1|865615|41|NZ_CP041660|CRISPRCasFinder matches to position: 864254-864294, mismatch: 1, identity: 0.976

ttcgagctaccagctacaagtttcgccaacattgtaggtcg	CRISPR spacer
ttcgagctatcagctacaagtttcgccaacattgtaggtcg	Protospacer
*********.*******************************

6. spacer 4.1|865615|41|NZ_CP041660|CRISPRCasFinder matches to position: 863934-863974, mismatch: 2, identity: 0.951

ttcgagctaccagctacaagtttcgccaacattgtaggtcg	CRISPR spacer
ttcgagctacaagttacaagtttcgccaacattgtaggtcg	Protospacer
********** **.***************************

7. spacer 8.1|2843864|48|NZ_CP041660|CRISPRCasFinder matches to position: 2843587-2843634, mismatch: 2, identity: 0.958

ttattgtcggtttagggtgacagttttttcatttaaaaccagtgcacc	CRISPR spacer
ttgttgtgggtttagggtgacagttttttcatttaaaaccagtgcacc	Protospacer
**.**** ****************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041660_5	5.1\|1187082\|30\|NZ_CP041660\|CRISPRCasFinder	1187082-1187111	30	MN693472	Marine virus AFVG_25M86, complete genome	618-647	7	0.767
NZ_CP041660_5	5.1\|1187082\|30\|NZ_CP041660\|CRISPRCasFinder	1187082-1187111	30	MN693472	Marine virus AFVG_25M86, complete genome	57043-57072	7	0.767
NZ_CP041660_7	7.1\|2795345\|32\|NZ_CP041660\|CRISPRCasFinder	2795345-2795376	32	NZ_CP026605	Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence	15281-15312	7	0.781

1. spacer 5.1|1187082|30|NZ_CP041660|CRISPRCasFinder matches to MN693472 (Marine virus AFVG_25M86, complete genome) position: , mismatch: 7, identity: 0.767

gacttacttgaaacttgtagcttgctgctt	CRISPR spacer
ttggtgcttgaagcttgttgcttgctgctt	Protospacer
    *.******.***** ***********

2. spacer 5.1|1187082|30|NZ_CP041660|CRISPRCasFinder matches to MN693472 (Marine virus AFVG_25M86, complete genome) position: , mismatch: 7, identity: 0.767

gacttacttgaaacttgtagcttgctgctt	CRISPR spacer
ttggtgcttgaagcttgttgcttgctgctt	Protospacer
    *.******.***** ***********

3. spacer 7.1|2795345|32|NZ_CP041660|CRISPRCasFinder matches to NZ_CP026605 (Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

atctacatgtcgggctaaagccacgacctaca	CRISPR spacer
gtttacccatcggcctaaaggcacgacctaca	Protospacer
.*.*** ..**** ****** ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

370812 : 384634

Pseudomonas_phage(27.27%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143869878.1\|370812_373131_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	5.7e-49	40.5
WP_143869879.1\|373138_373477_+	hypothetical protein	NA	NA	NA	NA
WP_143869880.1\|373458_373692_-	hypothetical protein	NA	NA	NA	NA
WP_143869881.1\|373779_374535_-	hypothetical protein	NA	NA	NA	NA
WP_143869882.1\|374537_374963_-	hypothetical protein	NA	NA	NA	NA
WP_143869883.1\|374962_375382_-	DUF1320 family protein	B7SDP4	Haemophilus_phage	1.5e-16	41.2
WP_143869884.1\|375388_375649_-	hypothetical protein	NA	NA	NA	NA
WP_143869885.1\|375733_376627_-	hypothetical protein	J9SVY7	Pseudomonas_phage	4.4e-74	47.1
WP_143869886.1\|376673_377048_-	hypothetical protein	A0A0M4TU84	Ralstonia_phage	1.9e-07	33.1
WP_143869887.1\|377094_378198_-	hypothetical protein	A0A0C4UQU6	Shigella_phage	1.1e-61	41.2
WP_143869888.1\|378461_378908_-	phage virion morphogenesis protein	A0A0S4L546	Pseudomonas_phage	1.6e-08	33.6
WP_143869889.1\|378907_379099_-	hypothetical protein	NA	NA	NA	NA
WP_143869890.1\|379095_380556_-	F protein	A0A2H4IYU7	uncultured_Caudovirales_phage	9.2e-53	44.4
WP_143869891.1\|380555_382136_-	DUF935 family protein	C9DGN6	Escherichia_phage	9.4e-128	48.0
WP_143869892.1\|382168_383743_-	hypothetical protein	J9RWF2	Pseudomonas_phage	3.8e-137	51.3
WP_143869893.1\|383735_384332_-	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	1.9e-44	58.2
WP_143869894.1\|384328_384634_-	hypothetical protein	A0A2P9JZI6	Alteromonadaceae_phage	8.4e-09	36.7

DBSCAN-SWA_2

390883 : 398208

Burkholderia_virus(42.86%)

transposase,integrase

attL 388391:388405|attR 396779:396793

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
388391:388405	attL	NA	NA	NA	NA
WP_143869908.1\|390883_391363_+	hypothetical protein	A4JWN5	Burkholderia_virus	3.7e-27	37.3
WP_143869909.1\|391355_391649_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_143869910.1\|391655_392657_+	hypothetical protein	NA	NA	NA	NA
WP_143869911.1\|392666_394481_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	2.2e-56	29.8
WP_143869912.1\|394481_395720_+	AAA family ATPase	J9SNL1	Pseudomonas_phage	1.2e-29	28.3
WP_143869913.1\|395870_396491_+	DUF3164 family protein	A4JWM8	Burkholderia_virus	2.1e-70	63.4
WP_143869914.1\|396532_396808_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	4.3e-20	57.8
396779:396793	attR	NA	NA	NA	NA
WP_143869915.1\|396873_397368_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_143869916.1\|397360_397735_+	hypothetical protein	A4JWM4	Burkholderia_virus	6.5e-11	37.7
WP_143869917.1\|397731_398208_+	hypothetical protein	A0A2P9JZH6	Alteromonadaceae_phage	1.9e-23	42.1

DBSCAN-SWA_3

871371 : 887803

Mycobacterium_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143870239.1\|871371_872415_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.9e-114	61.3
WP_143870240.1\|872572_873415_-	hypothetical protein	NA	NA	NA	NA
WP_143870241.1\|874275_874779_-	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	1.8e-24	46.7
WP_143870242.1\|874814_877403_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.9e-38	25.6
WP_143870243.1\|877460_878318_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.4e-31	33.7
WP_143870244.1\|878422_879157_-	redoxin family protein	A0A1D8KSL1	Synechococcus_phage	3.3e-43	56.6
WP_143870245.1\|879329_880289_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_143870246.1\|880375_883003_-	chitinase	B0FDP2	Orgyia_leucostigma_nucleopolyhedrovirus	7.5e-154	48.9
WP_143870247.1\|883032_884595_-	hypothetical protein	S5MQ61	Hemileuca_sp._nucleopolyhedrovirus	1.7e-36	37.8
WP_143870248.1\|884650_887803_-	glycoside hydrolase	A0A1X9VNM7	Mimivirus	2.1e-25	27.2

DBSCAN-SWA_4

2665179 : 2675162

Mycobacterium_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143871622.1\|2665179_2667897_+	DUF87 domain-containing protein	A0A218M9A2	Mycobacterium_phage	8.1e-87	48.4
WP_143871623.1\|2667899_2668526_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_143871624.1\|2668525_2669854_+	AAA family ATPase	G3MBE0	Bacillus_virus	2.0e-75	38.1
WP_143871625.1\|2669846_2670233_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.7e-09	36.9
WP_143871626.1\|2670249_2671548_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-91	44.1
WP_143871627.1\|2671736_2672072_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_143871628.1\|2672100_2672376_-	hypothetical protein	NA	NA	NA	NA
WP_143871629.1\|2672385_2672766_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_143871630.1\|2672762_2673146_-	sulfurtransferase complex subunit TusD	NA	NA	NA	NA
WP_143871631.1\|2673212_2673881_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.8e-48	54.1
WP_143871632.1\|2674517_2675162_+	UvrY/SirA/GacA family response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	5.4e-05	30.5

DBSCAN-SWA_5

3036285 : 3090447

uncultured_Mediterranean_phage(18.18%)

protease,tRNA,bacteriocin,integrase,transposase

attL 3086555:3086569|attR 3091067:3091081

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143871957.1\|3036285_3037557_-\|protease	trypsin-like serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	7.3e-06	31.7
WP_143871958.1\|3037683_3038487_-	inositol-1-monophosphatase	NA	NA	NA	NA
WP_143871959.1\|3038666_3039737_+	DUF2066 domain-containing protein	NA	NA	NA	NA
WP_143871960.1\|3039733_3040438_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_143871961.1\|3040534_3040810_+	hypothetical protein	NA	NA	NA	NA
WP_143872965.1\|3040883_3041537_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_143871962.1\|3041613_3043665_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	6.8e-86	32.4
WP_143871963.1\|3043731_3045111_+	sodium-dependent transporter	NA	NA	NA	NA
WP_143872966.1\|3045152_3047750_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.2e-18	23.1
WP_143871964.1\|3047813_3048047_+	DUF2835 family protein	NA	NA	NA	NA
WP_143871965.1\|3048144_3049728_+	hypothetical protein	NA	NA	NA	NA
WP_143871966.1\|3049828_3050044_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	8.5e-16	57.4
WP_143871967.1\|3050268_3050589_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	5.3e-14	47.7
WP_143871968.1\|3050629_3052903_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.1e-169	42.9
WP_017445978.1\|3052969_3053188_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_143872967.1\|3053267_3053969_-	arginyltransferase	NA	NA	NA	NA
WP_143871969.1\|3053976_3054684_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_143872968.1\|3054758_3055712_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	6.6e-60	42.9
WP_143871970.1\|3055902_3056496_-	DNA endonuclease SmrA	NA	NA	NA	NA
WP_143871971.1\|3056760_3058791_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_143871972.1\|3058897_3060112_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_143871973.1\|3060179_3061328_+	DUF3410 domain-containing protein	NA	NA	NA	NA
WP_143871974.1\|3061429_3066079_+	hypothetical protein	NA	NA	NA	NA
WP_143871975.1\|3066139_3066928_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_143871976.1\|3067059_3067920_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_143872969.1\|3067928_3069173_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_143871977.1\|3069176_3069845_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_143872970.1\|3069908_3070406_+\|bacteriocin	bacteriocin production protein	NA	NA	NA	NA
WP_143871978.1\|3070420_3071935_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-80	41.5
WP_143872971.1\|3072006_3072765_+	TSUP family transporter	NA	NA	NA	NA
WP_143871979.1\|3072826_3073183_-	hypothetical protein	NA	NA	NA	NA
WP_143871980.1\|3073339_3074083_+	DUF599 family protein	NA	NA	NA	NA
WP_143871981.1\|3074194_3076132_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_143871982.1\|3076787_3077687_+	hypothetical protein	NA	NA	NA	NA
WP_143871983.1\|3077686_3078829_+	hypothetical protein	NA	NA	NA	NA
WP_143871984.1\|3078904_3081868_-	TonB-dependent receptor	NA	NA	NA	NA
WP_143871985.1\|3082384_3082933_+	hypothetical protein	NA	NA	NA	NA
WP_143871986.1\|3083152_3083734_+	hypothetical protein	NA	NA	NA	NA
WP_143869686.1\|3083804_3084113_+	hypothetical protein	NA	NA	NA	NA
WP_143869685.1\|3084109_3084475_+	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	4.1e-10	34.8
WP_143869684.1\|3084510_3086082_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.5e-69	34.5
WP_143871987.1\|3086217_3088515_+	hypothetical protein	NA	NA	NA	NA
3086555:3086569	attL	NA	NA	NA	NA
WP_143871988.1\|3088517_3089396_+	hypothetical protein	NA	NA	NA	NA
WP_143871989.1\|3089382_3090057_-	deoxyribonuclease V	K7YG68	Megavirus	6.2e-20	32.1
WP_143871990.1\|3090234_3090447_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3091067:3091081	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3726725 : 3773404

Salmonella_phage(23.08%)

protease,integrase,capsid,terminase,transposase,head,portal,tail

attL 3728056:3728072|attR 3730647:3730663

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143872490.1\|3726725_3727955_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_143872491.1\|3727947_3728754_+	AAA family ATPase	NA	NA	NA	NA
3728056:3728072	attL	NA	NA	NA	NA
WP_143872492.1\|3729300_3730542_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_143872493.1\|3730538_3731348_+	AAA family ATPase	NA	NA	NA	NA
3730647:3730663	attR	NA	NA	NA	NA
WP_143872494.1\|3731800_3732778_-	hypothetical protein	NA	NA	NA	NA
WP_143872483.1\|3733418_3733745_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_143872994.1\|3733751_3733964_-	hypothetical protein	NA	NA	NA	NA
WP_143872484.1\|3734078_3735131_-	site-specific tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	3.9e-21	27.9
WP_143872495.1\|3735117_3738159_-	toprim domain-containing protein	A0A1S5RF71	Helicobacter_phage	9.0e-18	22.1
WP_143872486.1\|3738272_3738659_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143872487.1\|3739025_3739454_-	hypothetical protein	NA	NA	NA	NA
WP_143872496.1\|3739444_3740419_-	hypothetical protein	NA	NA	NA	NA
WP_143872497.1\|3740470_3740983_-	hypothetical protein	NA	NA	NA	NA
WP_143872498.1\|3741054_3742422_-	hypothetical protein	NA	NA	NA	NA
WP_143872499.1\|3742437_3743301_-	hypothetical protein	NA	NA	NA	NA
WP_143872500.1\|3743303_3744452_-	hypothetical protein	NA	NA	NA	NA
WP_143872501.1\|3745318_3746479_+	hypothetical protein	NA	NA	NA	NA
WP_143872502.1\|3746668_3747100_+	thermonuclease family protein	F2Y1F1	Organic_Lake_phycodnavirus	6.7e-12	40.6
WP_143872503.1\|3747456_3747762_-	hypothetical protein	NA	NA	NA	NA
WP_143872504.1\|3747775_3748171_-	hypothetical protein	NA	NA	NA	NA
WP_143872505.1\|3748172_3749684_-	hypothetical protein	NA	NA	NA	NA
WP_143872506.1\|3749684_3750128_-	hypothetical protein	NA	NA	NA	NA
WP_143872507.1\|3750197_3750887_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_143872508.1\|3750828_3752904_-	hypothetical protein	A0A2I7R0J0	Vibrio_phage	4.1e-46	28.8
WP_143872509.1\|3752981_3753731_-	hypothetical protein	NA	NA	NA	NA
WP_143872510.1\|3753748_3760636_-	hypothetical protein	R4VVI2	Alteromonas_phage	2.7e-30	33.1
WP_143872511.1\|3760639_3761230_-	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_143872512.1\|3761226_3761820_-	hypothetical protein	NA	NA	NA	NA
WP_143872513.1\|3761819_3763841_-	hypothetical protein	A0A1J0GWA6	Alteromonas_phage	4.1e-59	37.8
WP_143872514.1\|3763851_3764049_-	hypothetical protein	NA	NA	NA	NA
WP_143872515.1\|3764066_3764438_-	hypothetical protein	NA	NA	NA	NA
WP_143872516.1\|3764443_3764902_-	hypothetical protein	NA	NA	NA	NA
WP_143872517.1\|3764904_3765291_-	hypothetical protein	NA	NA	NA	NA
WP_143872518.1\|3765287_3765803_-	hypothetical protein	NA	NA	NA	NA
WP_143872519.1\|3765795_3766113_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_143872520.1\|3766109_3766448_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	6.2e-05	29.9
WP_143872521.1\|3766451_3766670_-	hypothetical protein	NA	NA	NA	NA
WP_143872522.1\|3766742_3767966_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.5e-109	50.4
WP_143872523.1\|3767980_3768634_-\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	5.1e-80	65.4
WP_143872524.1\|3768617_3769823_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	4.4e-101	47.6
WP_143872525.1\|3769822_3771541_-\|terminase	terminase large subunit	A0A1W6JP18	Morganella_phage	3.5e-144	48.3
WP_143872526.1\|3771540_3772089_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_143872527.1\|3772235_3772595_-	HNH endonuclease	Q7Y3U9	Yersinia_phage	1.4e-26	54.2
WP_143872528.1\|3772891_3773404_-	hypothetical protein	A0A2L0V1A6	Salmonella_phage	2.2e-25	44.1

DBSCAN-SWA_7

3796290 : 3806542

Bacillus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143872561.1\|3796290_3798933_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.0e-102	34.4
WP_143872996.1\|3799138_3799837_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_143872562.1\|3799818_3800490_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_143872563.1\|3800860_3803146_+	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	0.0e+00	68.8
WP_143872564.1\|3803229_3804360_+	ribonucleotide-diphosphate reductase subunit beta	A0A2D1GN60	Pseudoalteromonas_phage	4.2e-154	70.8
WP_143872565.1\|3804371_3804638_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	4.0e-15	54.0
WP_143872566.1\|3804669_3805575_+	recombination-associated protein RdgC	A0A2I7RNT5	Vibrio_phage	1.7e-60	40.8
WP_143872567.1\|3805696_3806542_-	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	9.7e-55	42.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041661

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041660

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection