CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041667	Lachnospiraceae bacterium KGMB03038 chromosome, complete genome	6 crisprs	csa3,RT,WYL,cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh	2	4	7	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041667_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041667_1

234998-235097

Orphan

Consensus_repeat	Method
ATGCATAGGGCGGACGCCCGCCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041667_1

>merge|NZ_CP041667|1|234998-235097|CRISPRCasFinder
ATGCATAGGGCGGACGCCCGCCAGCGAGATGGAGCGAAGCGGAATCAAGCTGGGGCATGGCTGTGAAAAGATTCATGCATAGGGCGGACGCCCGCCAGCG

>NZ_CP041667|1|1|234998-235097|CRISPRCasFinder
ATGCATAGGGCGGACGCCCGCCAGCG	AGATGGAGCGAAGCGGAATCAAGCTGGGGCATGGCTGTGAAAAGATTC
ATGCATAGGGCGGACGCCCGCCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041667.1\|WP_143928667.1\|230488_231457_+\|V-type-ATPase-subunit	unknown	unknown	gnl\|CDD\|376708
NZ_CP041667.1\|WP_143928676.1\|240369_241557_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP041667.1\|WP_143928677.1\|241635_243132_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP041667.1\|WP_143928679.1\|243865_245245_+\|potassium-transporter-KtrB	unknown	unknown	gnl\|CDD\|273349
NZ_CP041667.1\|WP_143928669.1\|231791_233561_+\|V-type-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235248
NZ_CP041667.1\|WP_143928663.1\|226958_227267_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179204
NZ_CP041667.1\|WP_143928674.1\|237487_238780_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP041667.1\|WP_143928662.1\|226324_226816_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP041667.1\|WP_143928678.1\|243124_243814_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP041667.1\|WP_143928680.1\|245258_245936_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP041667.1\|WP_143928666.1\|229863_230457_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224308
NZ_CP041667.1\|WP_143928675.1\|238866_240036_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340911
NZ_CP041667.1\|WP_143928670.1\|233560_234934_+\|V-type-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|235251
NZ_CP041667.1\|WP_143928661.1\|225345_226206_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100037
NZ_CP041667.1\|WP_143928665.1\|229316_229802_+\|V-type-ATP-synthase-subunit-K	unknown	unknown	gnl\|CDD\|235830
NZ_CP041667.1\|WP_143928664.1\|227304_229320_+\|V-type-ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|235600
NZ_CP041667.1\|WP_143928672.1\|236353_236722_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143928671.1\|235234_235894_+\|V-type-ATP-synthase-subunit-D	unknown	unknown	gnl\|CDD\|178991
NZ_CP041667.1\|WP_143928673.1\|236854_237355_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP041667.1\|WP_143928668.1\|231449_231767_+\|V-type-ATP-synthase-subunit-F	unknown	unknown	gnl\|CDD\|179293

Protein	Function_ID	Function_description	E-value
NZ_CP041667.1\|WP_143928667.1\|230488_231457_+\|V-type-ATPase-subunit	gnl\|CDD\|376708	pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit. This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae.	1.09445e-60
NZ_CP041667.1\|WP_143928676.1\|240369_241557_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP041667.1\|WP_143928677.1\|241635_243132_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.04491e-56
NZ_CP041667.1\|WP_143928679.1\|243865_245245_+\|potassium-transporter-KtrB	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.35201e-79
NZ_CP041667.1\|WP_143928669.1\|231791_233561_+\|V-type-ATP-synthase-subunit-A	gnl\|CDD\|235248	PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.	0
NZ_CP041667.1\|WP_143928663.1\|226958_227267_+\|hypothetical-protein	gnl\|CDD\|179204	PRK01005, PRK01005, V-type ATP synthase subunit E; Provisional.	0.000218238
NZ_CP041667.1\|WP_143928662.1\|226324_226816_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.02917e-91
NZ_CP041667.1\|WP_143928678.1\|243124_243814_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.25897e-88
NZ_CP041667.1\|WP_143928680.1\|245258_245936_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.26315e-47
NZ_CP041667.1\|WP_143928666.1\|229863_230457_+\|hypothetical-protein	gnl\|CDD\|224308	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion].	6.62013e-10
NZ_CP041667.1\|WP_143928675.1\|238866_240036_+\|MFS-transporter	gnl\|CDD\|340911	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Oxalobacter formigenes oxalate:formate antiporter (OFA or OxlT) and similar proteins. O. formigenes, a commensal found in the gut of animals and humans, plays an important role in clearing dietary oxalate from the intestinal tract, which is carried out by OFA/OxlT, an anion transporter that facilitates the exchange of divalent oxalate with monovalent formate, the product of oxalate decarboxylation. This exchange generates an electrochemical proton gradient and is the source of energy for ATP synthesis in this cell. The OFA-like subfamily belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.47562e-62
NZ_CP041667.1\|WP_143928670.1\|233560_234934_+\|V-type-ATP-synthase-subunit-B	gnl\|CDD\|235251	PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.	0
NZ_CP041667.1\|WP_143928661.1\|225345_226206_+\|hypothetical-protein	gnl\|CDD\|100037	cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.	3.07998e-45
NZ_CP041667.1\|WP_143928665.1\|229316_229802_+\|V-type-ATP-synthase-subunit-K	gnl\|CDD\|235830	PRK06558, PRK06558, V-type ATP synthase subunit K; Validated.	2.07113e-52
NZ_CP041667.1\|WP_143928664.1\|227304_229320_+\|V-type-ATP-synthase-subunit-I	gnl\|CDD\|235600	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.	1.88167e-154
NZ_CP041667.1\|WP_143928674.1\|237487_238780_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP041667.1\|WP_143928671.1\|235234_235894_+\|V-type-ATP-synthase-subunit-D	gnl\|CDD\|178991	PRK00373, PRK00373, V-type ATP synthase subunit D; Reviewed.	1.01364e-83
NZ_CP041667.1\|WP_143928673.1\|236854_237355_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	8.23869e-54
NZ_CP041667.1\|WP_143928668.1\|231449_231767_+\|V-type-ATP-synthase-subunit-F	gnl\|CDD\|179293	PRK01395, PRK01395, V-type ATP synthase subunit F; Provisional.	5.52498e-42

>NZ_CP041667.1|WP_143928670.1|233560_234934_+|V-type-ATP-synthase-subunit-B
MPKEYRTIQEVAGPLMMVKGVEGVAYDELGEIELANGEKRRCKVLEVDGDNVVVQLYENAAGINLSNSKVRFLGRSMELGVSGDMLGRVFDGLGRPIDDGPEILPEERRDINGLPMNPAARVYPSEFIQTGVSAIDGLNTLVRGQKLPIFSCSGLPHSQLAAQIARQAKVRGKDENFAVVFAAMGITFEESNFFVESFKETGAIDRTVLFVNLANDPAVERISTPRMALTAAEYLAFEKDMHVLVILTDITNYADALREISAAKKEVPGRRGYPGYMYTDLAQMYERAGRQRGKIGSITMIPILTMPEDDKTHPIPDLTGYITEGQVILSRDLYRKGLQPPIDVLPSLSRLKDKGIGEGKTRADHSNTMNQLFAAYSRGKDAKELMTILGEAALTEIDLIYAQFADAFEKEYVNQGYNTDRSIEETLDIGWKLLSILPRSELKRIDDKFLDEYYGKQ
>NZ_CP041667.1|WP_143928669.1|231791_233561_+|V-type-ATP-synthase-subunit-A
MSSVGTIKKVAGPLVIASGMRDANMSDVVRVSSQRLIGEIIEMHGDEASIQVYEETSGLGPGEPVESTGAPMSVELGPGLIASIYDGIQRPLDDIMKISGNNLQRGVEVAALKRDKKWEFVPVAKVGDAVEAGDVLGTVQETEIVQQKIMVPYGVEGIVKEIKAGEFTVEEVVAVLETKDGDHELTMMQKWPVRRGRPYVKKLPLDVPLVTGQRVVDTFFPIAKGGVAAVPGPFGSGKTVIQHQLAKWAEADIVVYIGCGERGNEMTDVLNEFPELKDPKTGRSLMERTVLIANTSDMPFAAREASIYTGITIAEYFRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYLGSRLAEFYERAGHVISLGKEGREGSLSVIGAVSPPGGDTSEPVSQATLRIVKVFWGLDSNLAYKRHFPAINWLTSYSLYLDNVSGWFNSTVAPDWMEDRQKMMSLLQDEAELEEIVQMVGMDALSPADRLKMEAARSIREDFLHQNSFHEVDTYTPLRKQYLMMKLVLAFYEKSLEALNKGASMRALLGMDVRERIGRYKYTAVDQIETEYEKIMSELDAEIAGAFGKEDF
>NZ_CP041667.1|WP_143928668.1|231449_231767_+|V-type-ATP-synthase-subunit-F
MYKIAVLGDYDSIYGFAALGLDTFPVTAQEEAGERLHQLAAQGYGIIYITEALAAELKHEIVRYQDQILPAIIQIPGISGNTGDGVLGVKKSVEQAVGSDILFSN
>NZ_CP041667.1|WP_143928667.1|230488_231457_+|V-type-ATPase-subunit
MSERYTYAVARIRALEVSLFSNAAIDQLIACQDYEQACQFLAERGWGDTDTVTDAEAMLTREEEKIWEVVKELHIDMENFAVLSYPKLFHNLKAAVKEAAVSDGNRHIYYDDVSIPGDVMREIVKEKDFYKLPANMQHAAQEAYEALLHTGDGQLCDVIIDRAALEAIYQAGKEAKADIIRAYAESTVGVADIKIAVRSQKTAKSVEFMKRAMAECDSINVDQLSKAALAGMEAIRDYLMGTAYAGGAEALAQSPSAFERWCDNRIIETISPQKYNAFTIGPVIAYVIARQNEIKTVRIILSGKLNDLPEDSIRERVREMYV
>NZ_CP041667.1|WP_143928666.1|229863_230457_+|hypothetical-protein
MTGLEKMKSQILDEAKAAAESKVSEARAQAAKIVCEAKDEAEKSGKSILQKSQAEVKGYQERIASSIDLQRRTKILEAKQKLIREVLEKALESMESMEREEYFSKMLGVLEKYALPQEGKLFFSEKDLADLPAGFEAEVERIASEKGGKLTVSKEGRKIQNGFILAYGGIEENCTLSAMFDAKKDELSDKIQHILFS
>NZ_CP041667.1|WP_143928665.1|229316_229802_+|V-type-ATP-synthase-subunit-K
MSILGEMGIVYALLGAAAAVFLAGAGSALGVGIAGQAASGVVTEDPSKFAKVLIIQLLPGTQGIYGLLVGFITLSKIGLLGGGAADLSVITGLQILAACLPVGIVGLISGKSQGETAAAAIGIVAKKPDQFGKAMLFPAMVETYAILALLISILAVSAIQV
>NZ_CP041667.1|WP_143928664.1|227304_229320_+|V-type-ATP-synthase-subunit-I
MAVLPMQRVSICALKKDRKAILEKIQSMGIMEMNQVAEGEEGFGTMDTVSARLSFDKKAQTAEQALAVLETYAPEKQSIFASLAGKDLVEKEKFDGTVADREEILETASLLLTDHKKIAEDKASIQKLENQIETLTPWLNLDVPMNYAGTKKAAMLLGTMPKETTLESIYARFADQELEAVDVETVYSDRDAVYLAVFCMRESESKVEEVLRAEGFARPTQAVEEIPRRQKEILEAEIQKLNKRIEETEEEIRQQEKSREPLKMISDYYRMRAEKYAVLGTLPQSQRTFVMSGYVPARFVPAVQKAIGEKFDCVLDIEEVKEEEDSPTVLKNNSFSASMEGVVASYGLPNKKEVDPTTIMSFFYVFFFGMMLSDAAYGAIIAIVCFVLLKKFPRMSSGMHKSLKMFMYCGISTVVWGILFGGYFGDVIPVVSETFFGTRINVDALWFVPLDDPMKLLIYSMLFGLIHLFVGHGIKGYMCLKDGNIKDFICDVVLWYVFLIGLILMLIPSDIFASVAQTKIVFPPVLNTLAKALAIIGAVGLLLMSGRDNKNPALRLALGAYDIYNVTGWLSDVLSYSRLLALGLATGVIASVINEMGSMFGNGILGAIGFIIVFIIGHTMNMGINILGAYVHTNRLQFVEFFGKFYDGSGRPFNPFESNTKYVDVKEETKS
>NZ_CP041667.1|WP_143928663.1|226958_227267_+|hypothetical-protein
MVEETIKTIREAEQEAEELVKKADETCTEILEQAEAEAKTIKETAKENAAKQAEADLNEAKRQGEEALEKALETVETEILSLYETARQKEAEAISAVIGELV
>NZ_CP041667.1|WP_143928662.1|226324_226816_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MLNIVLHEPEIPANTGNIGRTCVATGTRLHLIEPLGFRLNEKNLKRAGMDYWNDLDVRTYINYEEFLEKNPNARIYMATTKAQKAYTEVSYEPDCYIMFGKESAGIPEEILVRHKNDCVRIPMAGGIRSLNLANSAAIILYEALRQNDFLGMERTGHLHHLKW
>NZ_CP041667.1|WP_143928661.1|225345_226206_+|hypothetical-protein
MADENRLSEIAVVYGGMEKGGLYAVTAAANAVAAKCGKLLAAQVRIEYPIKMEKARIYGMLKPIRAFCRERGIELAEEGISPSPVVSRVMTVAVVNGEKSGKTGSESKSVRPGQEILVTKWIGLGGTARLLWECGERLKNHFPLRFLKQTEEMESLIFAGEDAMIANQAGAELMIPVAEGGILAALWQLAKTAGQGFSVDMKALPIRQETVEICEYLELNPYQLTGAGSLLIVAKEGQNMAEYLRKRGIPAVCAGCLTEGQGKILHNGEEIRYLDRPAPDEILKIF
>NZ_CP041667.1|WP_143928671.1|235234_235894_+|V-type-ATP-synthase-subunit-D
MASTQITPTRMELTKTKKKLATARRGHKLLKDKRDELMRQFLELAKENMALREKVEAGILSANKNFVIAKAGMDAATLNTALMAPKQEVSLGVGKKNVMSVNIPAFETKTRTADANDIYSYGFAFTSSDLDGAVKSLADILPDMLKLAETEKACQLMAAEIEKTRRRVNALEHVIIPEAQETIKYITMKLDENERSSQIRLMKVKDMMLEEAHHYSERA
>NZ_CP041667.1|WP_143928672.1|236353_236722_+|hypothetical-protein
MKERLPFYMVYQTPFLGDDEERTARRDYDYMKSIYPATAKRMMPFVEEECDRLMYDGSMIYDEYPDQLQMRLMCARIYDRAKDGEENPGKWLRDLTQVMVCQELCQRRREYRKYKKTFYMGK
>NZ_CP041667.1|WP_143928673.1|236854_237355_+|shikimate-kinase
MDNIILIGMPAAGKSTIGVIIAKRLGYRFIDVDLLIQESEGKLLKEIIAEKGIKGFLEVEERINAGLKTEHTVVSPGGSVVYCEKAMRHYQQIGTIVYLKASFETINKRLKNARSRGVVLEDGQTLRDLYEERCGLFEKYADITVCEDGLRLDETIEKVIEILQKS
>NZ_CP041667.1|WP_143928674.1|237487_238780_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEQYIIKGGHPLVGEVEIGGAKNAALAILAAAIMTDETVRIENLPDVNDINVLLDAIAGIGASVHRVDRHTVTINGRGVTDFNIEYDYIKKIRASYYLLGALLGKYRRAEVALPGGCNIGSRPIDQHLKGFRALGAEVEIEHGKIIAEAERLKGEHIYFDVVSVGATINVMMTATMAEGITILENVAKEPHVVDVANFLNSMGANIRGAGTDVIRIRGVQSLHRTEYSVIPDQIEAGTFMFAAAATKGDVTVMNVIPKHLEATIAKLVEMGCEVEEFDDAVRVVSKGDLKSTHVKTLPYPGFPTDMQPQIGVTLALSKGTSTITESIFENRFKYLDELARMGANVKIEGNSATIEGVKALSGARVSAPDLRAGAALCIAGLATEGITIVDDIVYIQRGYERFEEKLRGIGALIEKVSTEKEIQKFKLKVG
>NZ_CP041667.1|WP_143928675.1|238866_240036_+|MFS-transporter
MSRRREQNRYWILFVASVVNFVHGNPYIWTVFQPYVKEEFHLSDAASSQPFTIIIGIFALGNMAGGWLQQKIGAKKTILAGSLFMCAGFLLAGIAPYNMPWLVSLGYGAIGGFGSGCAFSMLTAVPLAWFPEKRGLVSGITVGVVGISGIVMNPFCDFLLASFGYRFAMLATTAIYAVLCLGGFWIEENPQNIKETAGDGGIERTISIKQYTTREMIKTKTYYTISLTMALAVPAYVLVNPLMKSLGMERGLTNTEALAGVTIASVANIIGRFAMPWLSDKVGRKAVIRGMYVAAAAAVIGLMGAEGGIFVLLISVVCLVYGGVVSVFPVVVSDHFGLKYQGINYGAVMIGYGLVSILCPYVLDNLGLEMSFLAAGIACAAGLLGTRHF
>NZ_CP041667.1|WP_143928676.1|240369_241557_+|methionine-adenosyltransferase
MERRLFTSESVTEGHPDKMCDQISDAILDALIEQDPMSRVACETCTTTGMVLVMGEITTQAYVDIQKIVRDTVREIGYTRGKFGFDAETCGVIVAIDEQSPDIALGVDKALEAKEKKMSEEEIDAIGAGDQGMMFGYASDETPEFMPYPIALAQKLARKLAEVRKNGTLPYLRPDGKTQVTIEYDENGAPARVDTVVLSTQHDPGVSQEQIHQDIKKYVFDPVIPADMTDEKTRYFINPTGRFVIGGPHGDSGLTGRKLIVDTYGGMARHGGGAFSGKDCTKVDRSAAYAARYVAKNIVAAGLARKCEIQLSYAIGVAHPTSIMADTFGTGRISDEKLVEIIRENFDLRPAGIIKMLDLRRPIYKQTAAYGHFGRTDLDLPWEKTDKAELLKKYL
>NZ_CP041667.1|WP_143928677.1|241635_243132_+|HAMP-domain-containing-protein
MKLRTRLFIAFLTVILLPICLTLLMFFAFSRYQMGAIEKTYGIENTTVETLSNSMQVLSRLTERSYHNLEAAIEKNPDDLEDATYLEDFNDNLEKKNSYLLVRKGNTLIYIGTDREKADPVICQLPEYQDADTSSENGIYLGGEAHSLVKQIDFLYSDNEEGSAFIVSDVSDVIPEVEELFLDTLLGVVLILVLTASVLMFWIYRSVKLPLKRMQVAAKNIKEGNLDFELKAQGDDELGQLCRDMEDMRRRLKDSAEEKVVFDRENKELISNISHDLKTPVTTIKGYAEGIMDGVADTPEKMEKYIRTIYNKASEMDLLINELTLYSKIDTNRIPYNFNILSVNEYFNDCAEDLSIELESKNVEFGYFNYVTPDVRVIADAEQMKRVIHNIVNNSLKYMDKEKAKINLRIKDVGDFIQVELEDNGKGIAAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSRENTGTTMYFVLRKYQEVPIHE
>NZ_CP041667.1|WP_143928678.1|243124_243814_+|response-regulator
MSRILIVEDEESIADLEKDYLELSGFQVEVANDGETGLRKALEEEYDLYILDLMLPGIDGFDICRQIRDVKNTPIILVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMARYDRLTESAVPKNKVIEIRGLKIDTTARRVWVNSQEKTFTTKEFDLLTFLASHPNHVYTKEELFREIWDMESIGDIATVTVHIKKIREKIEVDTSNPQYIETIWGVGYRFKV
>NZ_CP041667.1|WP_143928679.1|243865_245245_+|potassium-transporter-KtrB
MKYRRKSVRWNTMRILAAGFLGVILLGGVLLWLPISNQQPIAFIDALFTSTSAVCVTGLVTITPQVQFTLFGKIVLLLLIQVGGLGVVACIASFFFLLRKRITVKERIVIQEAYNMDRLGGIVGMLRRVIVGVFLVEGAGALFYAFQFVPEYGWIKGLGYSIFHAVSAFCNAGIDVLGSTSLSVYSANPLVNLTTMALIVLGGLGFVVWFDVLDNFRRLRKRRKTVGAGIAGLKLHSKLVILMTAVLLVVGTVVIFLMEYRNPQTMGGMSTGEKLLASAFQSVTTRTAGFFTMPQGELYDETKLFCSILMFIGGSPAGTAGGIKTTTIAMLLLSCLAVVRGGKDIECFGRKITFENFRTGFAVTVLAFGIFIGGTMLIAVFEADSVALVDIIYETTSAIGTVGLTADLTPHLERASQVVLMLLMYTGRIGPITLALVFAGKTDPKARLRELPGERVMVG
>NZ_CP041667.1|WP_143928680.1|245258_245936_+|TrkA-family-potassium-uptake-protein
MKKQYAVFGLGSFGESVAITLQGLGCEVIAVDNHMERIEEISKYVSYAMKADIEDPEVIRSLGARNLDGVVVAIADNMEASIMATLVSKDEGVPYVLAKAKNDLHATVLRKIGADSVIFPEKEAGSRVARSMVSANFADWIALSPEYSVMEVALPDAWIGKSLEALDVRKNHGVNVIGIRENDDVEVNPEPKKPLKRDMILILVGANSDLEKFAKYERNKLDHDN

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Crispr_ID: NZ_CP041667_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041667_2

1820057-1820140

Unclear

Consensus_repeat	Method
ATTCTGCTGATAAGTATACTGATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041667_2

>merge|NZ_CP041667|2|1820057-1820140|CRISPRCasFinder
ATTCTGCTGATAAGTATACTGATACTGGGGCTGATCTCCCTGGCCCTGATTTTGAGTCTGATTCTGCTGATAGGTATACTGATA

>NZ_CP041667|2|2|1820057-1820140|CRISPRCasFinder
ATTCTGCTGATAAGTATACTGATA	CTGGGGCTGATCTCCCTGGCCCTGATTTTGAGTCTG
ATTCTGCTGATAGGTATACTGATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041667.1\|WP_143929917.1\|1828042_1828702_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP041667.1\|WP_143929910.1\|1821705_1822281_-\|RnfABCDGE-type-electron-transport-complex-subunit-A	unknown	unknown	gnl\|CDD\|227004
NZ_CP041667.1\|WP_143929903.1\|1814040_1815048_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP041667.1\|WP_143929912.1\|1823022_1823607_-\|RnfABCDGE-type-electron-transport-complex-subunit-G	unknown	unknown	gnl\|CDD\|273889
NZ_CP041667.1\|WP_143929907.1\|1816687_1817677_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP041667.1\|WP_143929905.1\|1815688_1816183_-\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|377839
NZ_CP041667.1\|WP_143929909.1\|1820900_1821692_-\|RnfABCDGE-type-electron-transport-complex-subunit-B	unknown	unknown	gnl\|CDD\|235941
NZ_CP041667.1\|WP_143929906.1\|1816192_1816564_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759
NZ_CP041667.1\|WP_143931250.1\|1819633_1820038_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143929901.1\|1809907_1811380_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP041667.1\|WP_143929916.1\|1827173_1828031_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|260116
NZ_CP041667.1\|WP_143929915.1\|1826095_1827193_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235851
NZ_CP041667.1\|WP_143929911.1\|1822293_1823010_-\|RnfABCDGE-type-electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_CP041667.1\|WP_143929855.1\|1817754_1819146_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP041667.1\|WP_143929914.1\|1824595_1825915_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|273888
NZ_CP041667.1\|WP_143929902.1\|1813563_1813974_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NZ_CP041667.1\|WP_143929904.1\|1815065_1815680_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP041667.1\|WP_143929908.1\|1820358_1820826_-\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP041667.1\|WP_143929913.1\|1823606_1824563_-\|RnfABCDGE-type-electron-transport-complex-subunit-D	unknown	unknown	gnl\|CDD\|376991
NZ_CP041667.1\|WP_143929856.1\|1819254_1819407_-\|arginase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041667.1\|WP_143929911.1\|1822293_1823010_-\|RnfABCDGE-type-electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	1.49595e-100
NZ_CP041667.1\|WP_143929903.1\|1814040_1815048_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP041667.1\|WP_143929912.1\|1823022_1823607_-\|RnfABCDGE-type-electron-transport-complex-subunit-G	gnl\|CDD\|273889	TIGR01947, Electron_transport_complex_subunit_G, electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit. [Energy metabolism, Electron transport].	7.74454e-37
NZ_CP041667.1\|WP_143929910.1\|1821705_1822281_-\|RnfABCDGE-type-electron-transport-complex-subunit-A	gnl\|CDD\|227004	COG4657, RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion].	6.48182e-74
NZ_CP041667.1\|WP_143929905.1\|1815688_1816183_-\|Gx-transporter-family-protein	gnl\|CDD\|377839	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I. This family contains component I of bacterial heptaprenyl diphosphate synthase (EC:2.5.1.30) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.	1.24067e-37
NZ_CP041667.1\|WP_143929909.1\|1820900_1821692_-\|RnfABCDGE-type-electron-transport-complex-subunit-B	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	8.27273e-109
NZ_CP041667.1\|WP_143929906.1\|1816192_1816564_-\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	3.41499e-34
NZ_CP041667.1\|WP_143929916.1\|1827173_1828031_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|260116	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. The 4-hydroxy-3-methylbut-2-enyl diphosphate (HMBPP) reductase (called lytB or ispH) is the terminal enzyme of the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway, one of the two metabolic routes for isoprenoid biosynthesis. The MEP pathway is essential in many eubacteria, plants, and the malaria parasite. LytB converts HMBPP into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).	1.98404e-139
NZ_CP041667.1\|WP_143929908.1\|1820358_1820826_-\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	3.40365e-15
NZ_CP041667.1\|WP_143929917.1\|1828042_1828702_-\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	3.79705e-112
NZ_CP041667.1\|WP_143929915.1\|1826095_1827193_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235851	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.	7.82354e-133
NZ_CP041667.1\|WP_143929855.1\|1817754_1819146_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.68452e-166
NZ_CP041667.1\|WP_143929914.1\|1824595_1825915_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|273888	TIGR01945, Electron_transport_complex_subunit_C, electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport].	3.16095e-171
NZ_CP041667.1\|WP_143929902.1\|1813563_1813974_-\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	5.21549e-14
NZ_CP041667.1\|WP_143929904.1\|1815065_1815680_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	1.62245e-77
NZ_CP041667.1\|WP_143929907.1\|1816687_1817677_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	1.44263e-104
NZ_CP041667.1\|WP_143929913.1\|1823606_1824563_-\|RnfABCDGE-type-electron-transport-complex-subunit-D	gnl\|CDD\|376991	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of bacterial proteins includes a sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT. The family also includes proteins involved in nitrogen fixation, RnfD and RnfE. The similarity of these proteins to NADH-ubiquinone oxidoreductases was previously noted.	5.48567e-145
NZ_CP041667.1\|WP_143929901.1\|1809907_1811380_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	5.88678e-63

>NZ_CP041667.1|WP_143931250.1|1819633_1820038_-|hypothetical-protein
MNYQQNPGQSQNTNYQQYQDNYGNYNNYNQNYTNGYNNYNAANPQGYGQNYTQQPQMDTSPMTMGEWLLTILALLIPCAGIIIYFVWAFGKKGNINRRNYCRAMLIIYGVLLVIYIIFFVIFGAMIGASTTYYY
>NZ_CP041667.1|WP_143929856.1|1819254_1819407_-|arginase
MRVSLLYKTKPDSYTESCTVNAADRWRERNVWYPGRSVRNALKRVTIIER
>NZ_CP041667.1|WP_143929855.1|1817754_1819146_-|group-II-intron-reverse-transcriptase/maturase
MGTENGESCSQRDSAERKGYVRAHRSFNRIWKERDSAESDILGKILAKDNLNRAYKRVKANKGAPGVDGMTIEAALPWLKEHNYELTERIRKGKYTPSPVRRVEIPKADGGVRKLGIPTVIDRIIQQAMLQQLMPIYEPLFSDDSFGYRPGHGAKDAIHRIKEYMERGYTRAVVLDLSKYFDTLNHTILLNLLRKQVKDERVIQMVKRYLKSGVMENGVVTETKEGSPQGGNLSPLLANVYLNEFDWEFQRRGVPCIRYADDIVLLAKSERAAERLLESSTKYLEGTLKLKVNREKSRTVSVFSIGNFKFLGFCFGKNGKGIYVRVHGKSWKKAKDKLRKLTSRSRCGSIIRTMEKIKVYMRGWLNYYGIADMKKNIESLNGWLYRRIRMCIWKQWKRPKTRRRKLMGLGLPEWAACEGAYSRKSYWRMSNTGVVKRALTKERLINWGFYDLTTAYQSLHVNY
>NZ_CP041667.1|WP_143929907.1|1816687_1817677_+|FAD:protein-FMN-transferase
MRYKKIAALLTAAILLLPGCSGLTEKRNLVYTDTLYDTVISVKILDPAGDDILKGCEKLCRKYDTMFSYTNEDSDIYKINHAGGAAVEVSEETIDLIKRGIYYGDLSDGAFDISIGAVSSLWDFSSEEPAVPSSAALAEARTHVNYKNIILKDNTVMLRDPKAAIDVGAIAKGYIADRVKEYLEDQGVKHAVINLGGNVQTIGTKPDGTDYNIAIQKPFAKSGDAITSVKVANQSVVSTGIYQRYFEADDGTLYHHILDPSTGAPCKNNLYSVTIITDSSLTADALSTTCFLLGYEEGMRLIDQLDNVDAVFITDDQKLHYSSNFQKKQ
>NZ_CP041667.1|WP_143929906.1|1816192_1816564_-|NusG-domain-II-containing-protein
MKIKLKKKDWALIVIILCVAALAFLLHEVIGGSGAGKVVVKVAGEIEGTYDLSEDQEIEINGGTNILQIKGGKADMIEADCPDQLCVHQKDISRSHESIICLPNKVTVEIESAESSEYDAVVQ
>NZ_CP041667.1|WP_143929905.1|1815688_1816183_-|Gx-transporter-family-protein
MKNKVAYFGVFTALALIFSYVESLIPFQFGIPGVKLGLANLIIVIALYKMRLFEVFLLSIVRILLSGFIFGNYFSILYSLAGGLLSLAVMALLKKLGGFSVIGISVAGGVFHNVGQLLTAMVVVETFSVIYYVPVLLVAGVITGFLIGIAAGEMLKRLVNINFY
>NZ_CP041667.1|WP_143929904.1|1815065_1815680_-|Holliday-junction-branch-migration-protein-RuvA
MIEFIKGELAAVEADKAVIDVGGVGFALFMSGQALGKMPPAGHQVKIYTYLNVKEDAMQLYGFLTKDDLEVFRLLIGVSGIGPKGALGILSGLTPDELRFAVMSNDVKAISAAPGIGKKTAEKLILELKDKLKIEDVLEHAAQEGSGQGETNSGGGEVAGEAVQALIALGYGNTEALQAVKKAYVSEDMEVEEVLKAALKFVAF
>NZ_CP041667.1|WP_143929903.1|1814040_1815048_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MSRRIITTENLEEDIKIENHLRPQLLEDYIGQEKAKETLKVYIQAAKERGEALDHVLFYGPPGLGKTTLAGIIANEMDVNIKITSGPAIEKPGEMAAILNNLQEGDVLFVDEIHRLNRQVEEVLYPAMEDYAIDIMIGKGATARSIRLDLPKFTLVGATTRAGMLTAPLRDRFGVVHRLEFYTIDELKDIILRSAKVLEVGIDEAGAYALARRSRGTPRLANRLLKRVRDFAQVRYDGYITAQVADSALDLLDVDKSGLDQTDRELLETIICKFQGGPVGLDTLAAAIGEDAGTIEDVYEPYLLKNGYLQRTPRGRVATAKACGHLGISLENEKK
>NZ_CP041667.1|WP_143929902.1|1813563_1813974_-|cell-division-protein-ZapA
MASSKNFTEVLIGGKVFTLSGFESEEYLQKVSTYLNHKIEECSSSEGYRKQNSETRSVLLALNIADDYFKARKQGASLETDIEAKDKDMYDLKHELISVQIKLENAEKAMDRLKEENKELQMKIVELETEMKNKKK
>NZ_CP041667.1|WP_143929901.1|1809907_1811380_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MVNIIIELSKYIIIIMITMYTFMCFSIFGFQDPDRKKGMLRNQNILMFMIHIIAFLIMYLETDDIRLLAFYLMQVVLFGATILLYTFIYPKVSRLVINNMCMLLCIGMIMLTRLDYSSAVKQFMIAAGAIAISLVVPVIIRKFKRFSEWRNFYAIVGIISLAAVIVVGQVSGGAMLGFTVAGINVQPSELVKIVFVFFVASSFKISLEFKNIVATTALAAFHVLILVASRDLGAALIIFVVYLVMLYVATRQPLYILAGLGAGSAASVIAYYLFDHVRVRVLVWKDPFATYDSGGYQVAQSLFAIGTGSWFGMGLFQGEPDTIPVVVSDFIFSAIAEELGLIFALCMLLICVSCYVMFLNIAMQLHTMFYKLIALGLGTCYIFQVFLNVGGVTKFIPSTGVTLPLVSYGGSSLLSTIIMFGIIQGLYILREDEEENLERKKKERLRAAGSRKTGQKRTAKAGNVPQRPQRTKAPGKAAGKEKARPKQRIR
>NZ_CP041667.1|WP_143929908.1|1820358_1820826_-|DUF2752-domain-containing-protein
MKRTVKQTVHDGWKILKEDICQARWAIVALALYFLFFKYILHSMCPMVLATGYPCPGCGMTRAAFCVLRLDFAGAWETHPFIFPIIVLAAVFCWNRYVSGKKRQPVLRKCVTVLAVAMILFYFWRMWRFFPGQPPMSYYSGNLLSRIQGVLLHLR
>NZ_CP041667.1|WP_143929909.1|1820900_1821692_-|RnfABCDGE-type-electron-transport-complex-subunit-B
MSITGIILAAVIVGGTGLFIGIFLGLADKKFAVEVDEKEEQVLGVLPGNNCGGCGYPGCSGLAAAIAAGEAPVNACPVGGAPVAAKIGEIMGVDAGEQIHEVAFVKCAGTCEAAKTSYDYNGLHDCVMINMMQNGGPKACVYGCIGEGTCVKACPFDAIHIVDGVAVVDKEACKACGKCVAACPRHLIELVPYEQKHLVQCSSKDKGKDVMKACSVGCIGCKMCEKVCEAEAVKVVDNVAYIDTSKCTNCGACAEKCPKKIIL
>NZ_CP041667.1|WP_143929910.1|1821705_1822281_-|RnfABCDGE-type-electron-transport-complex-subunit-A
MADLILIAVGSALVSNVVLSQFLGICSFLGVSKKTETAVGMGGAVIFVITLASFVASLLYEFILKPLGFDYLNTIVFILVIAALVQIVEMFLKKFVPSLYNALGVYLPLITTNCAVLGVAINNVQDEYNLLESVVNGFATGVGYLIAIVLLAGIREKMEYNDIPESFKGMPIVLLTSTLMAIAFYGFSGLI
>NZ_CP041667.1|WP_143929911.1|1822293_1823010_-|RnfABCDGE-type-electron-transport-complex-subunit-E
MNSCGERLKNGLIDENPIFVLMLGMCPTLAVTTSAMNGLGMGVSTTAVLVMSNMLISMLRKVIPDSVRMPAFIVVVASFVTIVDFLMEGFTPSLYDALGLYIPLIVVNCIILGRAESYASKNPVLPSIFDGLGMGLGFTVALIAIGAVREIIGAGQIFGYQLLPIADEAAGTAGYVPVAIFVQAPGAFLVLAVLAAIQNKVKINMEKKGKDASKIQSGCGADCATCGGCASAAENGKE
>NZ_CP041667.1|WP_143929912.1|1823022_1823607_-|RnfABCDGE-type-electron-transport-complex-subunit-G
MNKIIKNTIILTVITLVSGLLLGLVYEITKEPIANAQEQAKREAWQAVFPDASQDAFEQIDVDGDVAAQVIKDLGMSGSIDEVCAVDGGDTGYVITVTDGEGYGGDIQITVGITADGTVSGVSFLSISETAGLGMKATESSFYEQYVGVQTEKFYVSKDGGEGEPIDAISGATITSRAVTSAVNAALGYFQNAF
>NZ_CP041667.1|WP_143929913.1|1823606_1824563_-|RnfABCDGE-type-electron-transport-complex-subunit-D
MSENKLKVSSSPHIRDRVTSGNIMLMVVIALLPASAFGVYNFGLSALIMLISTTVSSVLTEFIYEKLMHKKVTINDFSAVVTGLLLGLNMPPTAPWWMGVLGGIFAILVVKQLFGGLGQNFMNPALGARCFLMISFAGQMTTFVYDGVTGPTPLSYVKEGALDQVNTMDMLIGTIPGTIGETSVIAIIIGAIFLILMGVIDLRIPGTYIVTFVIFVGIFGHVAHPEIGFFDPQYITAHLCGGGLMLGAWFMATDYVTSPITKKGQIVYGIILGLLTGLFRIFGGSAEGVSYAIIISNLLVPLIEKVTLPKPFGKGGEK
>NZ_CP041667.1|WP_143929914.1|1824595_1825915_-|electron-transport-complex-subunit-RsxC
MALLTFKGGIHPDDGKGLAKGSEIVELKPKGSLVYPVSQHIGAPAAPVVKVGDVVLKGQKIAEAGGFVSAPIYSSVSGTVKAIEPHLNPTGGMVNSIVIENDGEYREVEYPEVKPLEEMSKEEILNAIGEAGVVGMGGAGFPTKVKLSPKEPDKIDYVIANCAECEPYITADYRAILEMPEKLVGGMKAVLRLFDNAKGIFGVEDNKPDCIAKLKELTKDEPRMEVLALKTKYPQGGERQLIYATTGRAINSAMLPADAGCVVDNVATMISIYQAVVEGRPSMERIVTVSGDAVNEPGNFKVPFGINQAELVEAAGGFKEDPQKLISGGPMMGFAMFTLDVPVTKTSSAILGFTKDEASKFEPTACINCGRCVEACPSRLIPSRLADYAENHNEEAFTKHEGLECMECGSCSYVCPAKRPLKQAIGSMRKIALANRKKK
>NZ_CP041667.1|WP_143929915.1|1826095_1827193_-|30S-ribosomal-protein-S1
MSEKTFEQMLEESFKTIRNGEVVDGTVIDVKPDEIILNIGYKADGIIMRNEYTNEPNVDLTTVVSVGDKMTVKVLKVNDGEGQVLLTYKRLAAEKGNERLREAYENHEVLKAPVTQILGGGLSVVIDEARVFIPASLVSDTYEKDLSKYQDQEIEFVISEFNPRRNRIIGDRRQLLVAERAERQKELFAKLQVGDTVEGTVKNVTDFGAFIDLGGIDGLLHISEMSWGRVENPKKVFQVGETIKVLVKDIHDTKIALSLKFPETNPWANAAEDYAVGTVIEGKVARMTDFGAFVELTPGVDALLHVSQISRAHVDKPSDVLSVGQMITAKIVDLNVEEKKISLSMKALETAAETESVDDGGSEEE
>NZ_CP041667.1|WP_143929916.1|1827173_1828031_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MKIELAKTAGFCFGVRRAVDTVYQQVGQAGGKPIYTYGPIIHNDEVVKDLEQKGVKVLDSKEELAAVEEGIVIIRSHGVSKEICGLMERKGIRCVDATCPFVKKIHKIVEEESGKGSHIVIVGNPEHPEVEGISGWAGGPVTIIQTKEEAESFTIKDPLQKVCIVSQTTFNYNKFKELVEIIAEKGYDIIVLNTICSATKERQEEARDIAKRVGAMIVIGDKKSSNTRKLFEICSNACADTYYIQTLDDLDMNQLRSVETVGITAGASTPNKIIEEVQNNVRKNF
>NZ_CP041667.1|WP_143929917.1|1828042_1828702_-|(d)CMP-kinase
MGYQVAIDGPAGAGKSTIAKRVAKEKGFIYVDTGAMYRALALYFLEQGIRADETDRMTEAVSGAEVGIQYENGIQQVYLNGRNVTGRLREEAVGNMASKSSAIPEVRQKLLELQRELAKTEDVVMDGRDIGTCVLPDADVKIFLTASVETRARRRYEELKEKGIPCSLDEIAKDIQERDERDMTRKTAPLKQAEDAVLVDSSNLTVEEVTARIIELCRG

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Crispr_ID: NZ_CP041667_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041667_3

1896563-1896682

Orphan

Consensus_repeat	Method
ACAGCTGCCTGTGGATCATCCTTCTCCTGTGCTGCTGCGGCGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041667_3

>merge|NZ_CP041667|3|1896563-1896682|CRISPRCasFinder
ACAGCTGCCTGTGGATCATCCTTCTCCTGTGCTGCTGCGGCGGCTGCGGAAACGGCTTTGGCGGAAACGGAAATGACAGCTGCCTGTGGATCATCCTTCTCCTGTGCTGCTGCGGCGGCT

>NZ_CP041667|3|3|1896563-1896682|CRISPRCasFinder
ACAGCTGCCTGTGGATCATCCTTCTCCTGTGCTGCTGCGGCGGCT	GCGGAAACGGCTTTGGCGGAAACGGAAATG
ACAGCTGCCTGTGGATCATCCTTCTCCTGTGCTGCTGCGGCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041667.1\|WP_143929957.1\|1891044_1891779_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP041667.1\|WP_143929972.1\|1900846_1901251_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_CP041667.1\|WP_143929971.1\|1899815_1900838_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372434
NZ_CP041667.1\|WP_143929974.1\|1903909_1904497_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP041667.1\|WP_143929969.1\|1898333_1898840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143929967.1\|1897494_1897770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143929968.1\|1897860_1898337_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP041667.1\|WP_143929970.1\|1899031_1899769_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|211337
NZ_CP041667.1\|WP_143931252.1\|1901266_1902124_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP041667.1\|WP_143929956.1\|1890598_1890946_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|376502
NZ_CP041667.1\|WP_143929955.1\|1889936_1890536_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP041667.1\|WP_143929961.1\|1892945_1894307_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP041667.1\|WP_143929962.1\|1894344_1894689_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP041667.1\|WP_143929964.1\|1895776_1896412_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|274090
NZ_CP041667.1\|WP_143929966.1\|1897007_1897502_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143929958.1\|1891793_1892303_-\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP041667.1\|WP_143929960.1\|1892630_1892876_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP041667.1\|WP_143929973.1\|1902272_1903907_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NZ_CP041667.1\|WP_143929959.1\|1892376_1892607_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179040
NZ_CP041667.1\|WP_143929963.1\|1894779_1895670_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173812

Protein	Function_ID	Function_description	E-value
NZ_CP041667.1\|WP_143929957.1\|1891044_1891779_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.14578e-149
NZ_CP041667.1\|WP_143929960.1\|1892630_1892876_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	1.77603e-39
NZ_CP041667.1\|WP_143929972.1\|1900846_1901251_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	2.27019e-59
NZ_CP041667.1\|WP_143929971.1\|1899815_1900838_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	6.24751e-47
NZ_CP041667.1\|WP_143929974.1\|1903909_1904497_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	6.94338e-44
NZ_CP041667.1\|WP_143931252.1\|1901266_1902124_-\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	4.05141e-98
NZ_CP041667.1\|WP_143929956.1\|1890598_1890946_-\|50S-ribosomal-protein-L19	gnl\|CDD\|376502	pfam01245, Ribosomal_L19, Ribosomal protein L19.	2.84819e-62
NZ_CP041667.1\|WP_143929955.1\|1889936_1890536_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	4.68143e-42
NZ_CP041667.1\|WP_143929961.1\|1892945_1894307_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP041667.1\|WP_143929968.1\|1897860_1898337_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	2.25894e-47
NZ_CP041667.1\|WP_143929964.1\|1895776_1896412_+\|DnaJ-domain-containing-protein	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	3.26669e-20
NZ_CP041667.1\|WP_143929970.1\|1899031_1899769_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	2.51184e-90
NZ_CP041667.1\|WP_143929958.1\|1891793_1892303_-\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	4.89956e-61
NZ_CP041667.1\|WP_143929962.1\|1894344_1894689_-\|DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	9.82617e-27
NZ_CP041667.1\|WP_143929973.1\|1902272_1903907_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP041667.1\|WP_143929959.1\|1892376_1892607_-\|KH-domain-containing-protein	gnl\|CDD\|179040	PRK00468, PRK00468, KH domain-containing protein.	9.44086e-24
NZ_CP041667.1\|WP_143929963.1\|1894779_1895670_-\|S8-family-serine-peptidase	gnl\|CDD\|173812	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	5.5997e-116

>NZ_CP041667.1|WP_143929964.1|1895776_1896412_+|DnaJ-domain-containing-protein
MEGKTYYEILGVSSKATLEEITAAKNRLAKQYHPDVNMKNGIDTTALMQEVLEAYRVLSDTAARADYDRKTAGRPAVMQTYDLHSASASENQEDPAFVTYWKASNALYDIVTESDALFHQKDESSRIAQLAMQALKHIITLREGQIPERYWHPDIMNWLLFAWYKNRNFTTTYLLTLYDEHLKTEIPVVDKLKLKNKSLRYQHSVKRLIKY
>NZ_CP041667.1|WP_143929963.1|1894779_1895670_-|S8-family-serine-peptidase
MDRVKQAVRYWCADTRNGRCMGRNVTAAVLDSGIAPHPDFKGRILAFKDFVGGRRELYDDNGHGTHVAGILAGDGRMSGGILAGMAPEAKLVILKVLDQKGEGNMRQILEGICWLMRNGNRFGIKVVNISVGAREGLNEEKENWLVEAVERLWDAGIVVVVSAGNYGPEQGTIAIPGNSRKVITVGAYAKTARGQECSGRGPTKACVVKPDLVAPGYQIISCNRVSARNRKPYIVKSGTSMATPVVAGAGAMLLSKYPDMSNVEIKLKLRESCRRTGSGDGWGLLDVERLLGPGDF
>NZ_CP041667.1|WP_143929962.1|1894344_1894689_-|DNA-binding-protein
MNEILKQALLFDFYGELLTDHQKEIYGRFILDDLSSAEIAKEAGISRQGVHDLIRRCTQTLDGYEGKLHLVERFLAVKNKVKQIDELLDRYEAGKDRKALEEIRRISGEIIEEL
>NZ_CP041667.1|WP_143929961.1|1892945_1894307_-|signal-recognition-particle-protein
MAFDSLTEKLQNIFKSLRGKGRLTEDDVKEAMKEIKRALLAADVNFKVVKDFIKNVQERAVGQDVMNGLNPGQMVIKIVNEELIKLMGSETTEIQLQPGSAATVILMAGLQGAGKTTTAAKLAGKFKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFSMGENHKPANIAKAALEHAQKNGNNIIILDTAGRLHIDEDMMKELQEIKEAVTVHQTILVIDAMTGQDAVNVAKEFNEKAGVDGVIITKLDGDTRGGAALSVKAVTGKPILYAGMGEKLSDLEQFHPDRMASRILGMGDVLTLIEKAEAEIDEEKAKEMSKKLKKAQFDFEDYLESMKQMKKMGGLGSIMSMMPGLGGMGGMGGLGKKGITEEQTAQAEKSMARMEAMIYSMTIEERRNPDLLNPSRKHRIARGAGVDISEVNRMVKQFAEMKKMMKMLGKGGRKNRFRMPF
>NZ_CP041667.1|WP_143929960.1|1892630_1892876_-|30S-ribosomal-protein-S16
MAVKIRLRRMGQKKAPFYRIVVADSRSPRDGRFIDEIGIYDPNCEPSAISVDEEVAKKWLNTGAQPTETVSKIFKAAGIEK
>NZ_CP041667.1|WP_143929959.1|1892376_1892607_-|KH-domain-containing-protein
MKELVEVIAKSLVDDPDSVVVTEREEKKTTILEVRVADSDMGKVIGKQGRIAKAIRAVVKAAAAKEDKKVIVDIMD
>NZ_CP041667.1|WP_143929958.1|1891793_1892303_-|16S-rRNA-processing-protein-RimM
MEEIFQVGVITSTHGIRGEVKVFPTTDDPARFQDLTEVLLDTGKEKILLEVQNVRFFKQFVILKFKGLDNINDVERYRRCPLLIERKDAVPLEEDEYFIADMLGMEVAEEDGRRFGTLKDVIQTGANDVYVIDSLEHGEVLVPAIKECILEVDIPKGRMKIRVMDGLIG
>NZ_CP041667.1|WP_143929957.1|1891044_1891779_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRFHIMTLFPDMVMNGLNTSITGRAIQKGLLSVEAVNIRDYAFNKHNSVDDYPYGGGAGMLMQAEPVYQCYHALEEKIGKRPRVVYLSPQGQTFHQKMAEEFAQEEELVFLCGHYEGIDERVLEEIVTDYVSIGDYILTGGELPAMIMVDAISRLVPGVLHNDVSAEFESFQDHLLEYPQYSRPEIWHGKQVPEVLLSGHHANIEKWRRRQSVLRTARNRPDLLEEAELTEEEQELVKEILAFL
>NZ_CP041667.1|WP_143929956.1|1890598_1890946_-|50S-ribosomal-protein-L19
MNEIIKNLEAEQLKENAPEFCVGDTVKVYGKIKEGNRERIQVFEGTVLKKQGGGARTTFTVRKNSNGIGVEKTWPLHSPNVEKVEVVRRGKVRRAKLNYLRNRVGKRAKVKELVK
>NZ_CP041667.1|WP_143929955.1|1889936_1890536_-|signal-peptidase-I
MKRRNQLGFSRRRRRRRPRRFHLNLEYLPQIGAWAFKIGVVCLFAFVAVWYFGQRVSTVGDSMKPILENGDVVLVNRIVYNATTPKRGDIIVFRPKGNENSHYYIKRIIGLPGETVEIIENRIYINGEKIEEDYKTSDIDDVGILSEPMTLGSDEYFVLGDDRENSEDSRNADVGNVKRSHIYGKAWFVISPWKNFGPI
>NZ_CP041667.1|WP_143929966.1|1897007_1897502_+|hypothetical-protein
MEARPPKLMTPFDSLVISDPLYTLKLLLPYTPPSAQRMLAVYIKFQEFRYTLEYFWGFPRPGSPDHLLQDLKPYMTPQERETMEQMEGMLNMMELMQEFPVLSGQEEDGAGSGGFPSSIDLIKHMLTPEQQELFHTYSTFFDDALASSQGEDAKGNKKGGSEHE
>NZ_CP041667.1|WP_143929967.1|1897494_1897770_+|hypothetical-protein
MNEWMNHPAMENIDPIKLELIKTAAKQTQGKSGNSLAPVMMALITSANKKGIRFQPEEISLIMDSLKEGKTKEEQEQIDRMMQMVKAYLKR
>NZ_CP041667.1|WP_143929968.1|1897860_1898337_-|acyl-CoA-thioesterase
MSVTSRKVSESVVQTVHIVRPNHLNAAGRLFGGILMQWIDEVAGVVAKRHAHQNVITASVDNLRFLRGAYQRDLIVIIGKVTYVGTTSMEVKVDTYVEDLDGVKTPINHAFFTMVALDQNDKPTPVPKLELETQEEREEWEKARKRRDVRMMRREEGF
>NZ_CP041667.1|WP_143929969.1|1898333_1898840_-|hypothetical-protein
MAEPTRRKPVAKEALLSAGCLYADTVQEAFQKYQSAVLSAQRKEDLRDFLRAVYQRNPGAMYADFYYPVLPRQEQERFRAGLSGEQRERLETLDTESGRIFYPVTEKELDFLYEITAAEWLFSSFYAGNQKALIWGNYGLNFPIFCEEEETLEFYLGLAQTYKVRWNK
>NZ_CP041667.1|WP_143929970.1|1899031_1899769_+|tRNA-pseudouridine(38-40)-synthase-TruA
MRNIKLTIEYDGSRYQGWSRLGKNESNNTISNKIQEVLRKMTGEFLIELSCGCRTEVGVHAYAQVVNFKTESDIETQEIKHYLNRYLPMDIAITDVEEVPERFHAQLNAVSQTYVYRMTIADVPSVFDRRHTFHCFKVPDKKAMQQAAMLLIGTHDFKNFSASKSSKSTVREILDIDIYGDEEEMQILICADNFLHNMARMIIGTLLDIGFGSRRKEEIEEIFEGASASSAPCDPKGLYLQEVRY
>NZ_CP041667.1|WP_143929971.1|1899815_1900838_-|GNAT-family-N-acetyltransferase
MEYEGEERKDCKERISEAQFLTFMHEAERLKCIPRHAWTSSDRRESVAEHCWRLCLAVWLLKEELPAVDIERLMELGLLHDLGEAMTGDIPAFEKHKSHEEKEQEAVKRLAALLPEAKGRELQDRLLEFEKAKTLEGKTAKALDKIEAVIQHNESKIGTWLPLEYDLQLTYGTEEAKKIPYLARLREAVREETMRKIEKETAKEKPRKGYYVSKDPKKLSLERAAALLRQSYWAKDRPKEMIRKAMEHSLCYGVYDEADYMVGYARVITDHATTFYLMDVIIDEPYRHQGLGTMLMDRIMEDMKGLHGVLHTTDAKEFYHRYGFVRNQEKLDSVMEKPRD
>NZ_CP041667.1|WP_143929972.1|1900846_1901251_-|YjbQ-family-protein
MNLFEHKISTGSPQQMTKVTGMIREDIAKSGVKNGIVVVYSPHTTAGFTINENADPDVVHDMLCGLEESFPTRRSYYQHMEGNSHAHLKTTCVGPSQTLILEEGKLVLGIWQDVYFCEFDGPRNRRFFVKILEG
>NZ_CP041667.1|WP_143931252.1|1901266_1902124_-|patatin-family-protein
MVTGTMVLEGGATRGVFTSGVLDYLMEKDLYLSHVIGVSAGSCNGVDYVSKQPGRTRDCMIQKDKEYNYYHGLRDFIKEKSVLDMDMVFDRYPNEIFPFDFDTYFASEMECEIVITNCVTGRAEYRTEDHDRDMLMKLCRASSSMPLLAPMVNIDGTPYLDGGLADSIPVERAMEIGNDKIVLILTRNPGYRKKPTSKGLANLYRRAYRKYPNLVSVTIQRNYIYNRQMNLIEKLEDEGKIFVLRPLIPTVSRLEKNYDALMHFYEHGYRLMKKQYNELLKYLEA
>NZ_CP041667.1|WP_143929973.1|1902272_1903907_+|ATP-binding-cassette-domain-containing-protein
MISTSNITLRVGKKALFEDVNIKFTEGNCYGLIGANGAGKSTFLKILSGQLEPTKGEVSITPGERLSFLQQDHFQYDGYPVLDTVMMGNARLYEIMKEKEVIYAKEDFTDEDGIKASELEAEFASMNGWEAESDAASLLNGLGIGTELHYEMMKNLDGPQKVKVLLAQALFGNPDILLLDEPTNHLDLDAIAWLEEFLINFDNTVIVVSHDRYFLNKVCTQIADIDYGKIKLYAGNYDFWYESSQLLIRQMKEANKKKEEKIKELQEFISRFSANASKSRQATSRKRALEKIQLDEIQPSSRKYPYIDFRPNREIGNEVLTVEGLSKTINGEKVLDNLSFTLNREDKVAFVGGNELAKTTLFQILSGEMEPDEGTYKWGITTSQAYFPLDPGDEFDNDYTIVEWLTQYSEEKDVTYVRGFLGRMLFSGEDGVKKVKVLSGGEKVRCLLSKMMISGANVLILDEPTNHLDMESITALNNGLIKFPGVILFSSRDHQIVQTTANRIMEIVPGGKLIDKITTYDEYLESDEMARKRQTYSVNQEEDD
>NZ_CP041667.1|WP_143929974.1|1903909_1904497_-|thiamine-phosphate-synthase
MCRREDWGRVTAVTNRRLTSRPYEEQMKRICRLRPAAVIVREKDLPEEVYADLAGRVKTICESYGVPCIYHTYLEAARQAGVRRIHLPLALLRSLEGEPSLREDFDQIGTSIHSLEEALEAVRLGADCLTAGHVYVTDCKKGLAPRGISFLREICQAVPIPVYGIGGIHPGTGQVEEVCSCGAAGACIMSGMMEI

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Crispr_ID: NZ_CP041667_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041667_4

1993071-1993171

Orphan

Consensus_repeat	Method
CCGCCCCTGCTCTGGCCTCTTTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041667_4

>merge|NZ_CP041667|4|1993071-1993171|CRISPRCasFinder
CCGGAACGGTTCTGGCCTCTCTCACCGCCCCTGCTCTGGCCTCTTTCGCCAAAGTTTCGATTCTGGTTTCTGTCGCCGCCTCTGCTCTGGCCTCTTTCGCC

>NZ_CP041667|4|4|1993071-1993171|CRISPRCasFinder
CCGGAACGGTTCTGGCCTCTCTCACC	GCCCCTGCTCTGGCCTCTTTCGCCAAAGTTTCGATTCTGGTTTCTGTCG
CCGCCTCTGCTCTGGCCTCTTTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041667.1\|WP_143930050.1\|1987492_1987759_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP041667.1\|WP_143930055.1\|1993899_1994223_-\|50S-ribosomal-protein-L7ae	unknown	unknown	gnl\|CDD\|236077
NZ_CP041667.1\|WP_143930053.1\|1990639_1991023_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NZ_CP041667.1\|WP_143930052.1\|1988794_1989700_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|178886
NZ_CP041667.1\|WP_143930060.1\|2000596_2000827_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379188
NZ_CP041667.1\|WP_143931256.1\|1989696_1990650_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_CP041667.1\|WP_143930047.1\|1983685_1984582_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP041667.1\|WP_143930046.1\|1982190_1983585_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP041667.1\|WP_143930063.1\|2004022_2005945_-\|DNA-gyrase-subunit-B	unknown	unknown	gnl\|CDD\|235542
NZ_CP041667.1\|WP_143930058.1\|1995760_1996228_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP041667.1\|WP_143930056.1\|1994209_1994488_-\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP041667.1\|WP_143930045.1\|1980882_1982109_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
NZ_CP041667.1\|WP_143930059.1\|1996395_2000457_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|311509
NZ_CP041667.1\|WP_143931257.1\|2006021_2007149_-\|stage-II-sporulation-protein-P	unknown	unknown	gnl\|CDD\|377838
NZ_CP041667.1\|WP_143930057.1\|1994497_1995742_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP041667.1\|WP_143930049.1\|1985203_1987291_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP041667.1\|WP_143930062.1\|2001769_2004007_-\|DNA-topoisomerase-4-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP041667.1\|WP_143930061.1\|2000871_2001765_-\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP041667.1\|WP_143930051.1\|1987880_1988783_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP041667.1\|WP_143930048.1\|1984554_1985085_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427

Protein	Function_ID	Function_description	E-value
NZ_CP041667.1\|WP_143930050.1\|1987492_1987759_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	5.80573e-58
NZ_CP041667.1\|WP_143930055.1\|1993899_1994223_-\|50S-ribosomal-protein-L7ae	gnl\|CDD\|236077	PRK07714, PRK07714, YlxQ family RNA-binding protein.	6.17516e-33
NZ_CP041667.1\|WP_143930053.1\|1990639_1991023_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.70244e-40
NZ_CP041667.1\|WP_143930052.1\|1988794_1989700_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|178886	PRK00130, truB, tRNA pseudouridine synthase B; Provisional.	2.57223e-120
NZ_CP041667.1\|WP_143930060.1\|2000596_2000827_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	2.06783e-11
NZ_CP041667.1\|WP_143931256.1\|1989696_1990650_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	2.95891e-60
NZ_CP041667.1\|WP_143930047.1\|1983685_1984582_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	9.60872e-22
NZ_CP041667.1\|WP_143930046.1\|1982190_1983585_-\|MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.62033e-95
NZ_CP041667.1\|WP_143930063.1\|2004022_2005945_-\|DNA-gyrase-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_CP041667.1\|WP_143930058.1\|1995760_1996228_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	2.31238e-62
NZ_CP041667.1\|WP_143930056.1\|1994209_1994488_-\|DUF448-domain-containing-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	2.35822e-35
NZ_CP041667.1\|WP_143930045.1\|1980882_1982109_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
NZ_CP041667.1\|WP_143930059.1\|1996395_2000457_-\|hypothetical-protein	gnl\|CDD\|311509	pfam07581, Glug, The GLUG motif. This family is found in the IgA1 (M26) peptidases, which attached to the cell wall peptidoglycan by an amide bond. IgA1 protease selectively cleaves human IgA1 and is likely to be a pathogenicity factor in some pathogens. This family is also found in various other contexts, including with pfam05860. It is named GLUG after the mostly conserved G-L-any-G motif.	0.00145481
NZ_CP041667.1\|WP_143931257.1\|2006021_2007149_-\|stage-II-sporulation-protein-P	gnl\|CDD\|377838	pfam07454, SpoIIP, Stage II sporulation protein P (SpoIIP). This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation. Engulfment in Bacillus subtilis is mediated by two complementary systems: the first includes the proteins SpoIID, SpoIIM and SpoIIP (DMP) which carry out the engulfment, and the second includes the SpoIIQ-SpoIIIAGH (Q-AH) zipper, that recruits other proteins to the septum in a second-phase of the engulfment. The course of events follows as the incorporation firstly of SpoIIB into the septum during division to serve directly or indirectly as a landmark for localising SpoIIM and then SpoIIP and SpoIID to the septum. SpoIIP and SpoIID interact together to form part of the DMP complex. SpoIIP itself has been identified as an autolysin with peptidoglycan hydrolase activity.	1.0932e-62
NZ_CP041667.1\|WP_143930057.1\|1994497_1995742_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP041667.1\|WP_143930049.1\|1985203_1987291_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP041667.1\|WP_143930062.1\|2001769_2004007_-\|DNA-topoisomerase-4-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP041667.1\|WP_143930061.1\|2000871_2001765_-\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	8.31992e-57
NZ_CP041667.1\|WP_143930051.1\|1987880_1988783_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.46728e-103
NZ_CP041667.1\|WP_143930048.1\|1984554_1985085_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.09457e-57

>NZ_CP041667.1|WP_143930053.1|1990639_1991023_-|30S-ribosome-binding-factor-RbfA
MRKRSIKNTRVNVEVQRELSSIIRGGLKDPRVAPWTSVVAAEVAPDLKTCKAYISVLGDEKAQKETIQGLESAEGYIRRELARTLNMRNTPEIHFILDQSIEYGVNMSKKIEEVTGQMETEGEKDAQ
>NZ_CP041667.1|WP_143931256.1|1989696_1990650_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MLNRMIAQANTIAIGGHERPDGDCTGSCMGLYLYILENYSGKTVDIYLEQIPRSYQFLKRSGEIRHEAPKDQKYDLFICLDCGDKERLGFSQTLFEQAAHTLCVDHHISNKGFGEENYVVPDASSTSELIYDLIDKEKITLPVAEALYLGIVHDTGVFQYSCASPATLRAAADLMERGVDAPALIRKTYVEKSYAQNQVLGRALMESILFMDGRCIASYIRRREMEFYGVEPKALDGIVSHLRDTKGVEVAVFMYELKPSVYKVSLRSKEQVDVSRIAQYLGGGGHKRAAGFTMAGTPHDVLNNLSGLIEDQLGEPV
>NZ_CP041667.1|WP_143930052.1|1988794_1989700_-|tRNA-pseudouridine(55)-synthase-TruB
MINGILNVYKEKGFTSHDVVAKLRGITGQRKIGHTGTLDPEAEGVLPICLGRATKVCELLTDQDKTYEAVLLLGVRTDTQDTAGTVLEEGDASAVTEERLKETVKNYIGDYDQIPPMYSALKVNGKKLYELAREGKTVERKARRVRIHEIKILDIHFPRIRMRVNCSKGTYIRTLCDDIGREIGCFGCMESLVRTKAGPFEKSGAHTLEEIEQRQKQGTLGEILRSIDSLFQEYPAVYVEARWEKLALNGNSLRRGMIRTEGRAEDGERVRLYNEKGDFLALYGYQKKTQEYKAVKMFCGS
>NZ_CP041667.1|WP_143930051.1|1987880_1988783_-|bifunctional-riboflavin-kinase/FAD-synthetase
MEYLKGLEHYKDTRRSAVTFGKFDGLHRGHQTLIRKVAQLRQTEQVRAAVCAFDMKRTGILMTKEERAAHLEDSMDYLVECPFSEELRKMSGEEFIKEIICGVFHAKYVVVGTDFHFGYGQGGDADMLKEYAGAYGYEAIVLEKERYQGRIISSTYIKELMAEGNIQLADKLLGYPYSIKGVVEHGRRLGRTLGFPTFNVEWPQAKIVPPRGVYFSRTWLDGKCYAGITNVGVKPTVSTEDKVLAESFLFDYEGSAYDKEVRVELLDFRRPERKFADIQEMKAAIDRDIESGREYFIKNA
>NZ_CP041667.1|WP_143930050.1|1987492_1987759_-|30S-ribosomal-protein-S15
MISKEQKEQIIAEYGRSEGDTGSPEVQVAILTARINDLTEHFKNNPKDHHSRRGLLKMVGQRRGLLAYLKKIDIERYRSLIERLGLRK
>NZ_CP041667.1|WP_143930049.1|1985203_1987291_-|polyribonucleotide-nucleotidyltransferase
MYKKYEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERLYAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPELTAMLGAAIATTISDIPFDGPISSTQVGLVDGELVFNPTAAQREVSKLSLTVASTKEKVIMIEAGAEEVPEQQMIDAIFAAHELNQKVIAFIETIVAECGKPKHSYESCAVPEELFEAIKEIVPPAQMEEAVFTDEKQVREENIRQITEKLEEAFAEKEDWLEVLGEAVYQYQKKTVRKMILKDHKRPDGRAIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICTITTLAPLAEAQRLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPDETEFPYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYLVLTDIQGLEDFFGDMDFKVAGTHEGITAIQMDIKIHGLTRPIIEEAIAATRKARLYILDEVMAKTIAEPRPEVGPYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDIEDDGSVSICGTEAASMEEARKLIHIIVTDFEAGQVLEGKVVSIKEFGAFLEFAPGKEGMVHISKLAKERVNHVEDVLTLGDVVKVVCLGKDKMGRFSFSMKDVAE
>NZ_CP041667.1|WP_143930048.1|1984554_1985085_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MQYVSHYQSPIGRILLAADETCLTGLWFEGQKYFGLHLDKEREEKEIPLFQAAKQWLDIYFSGEEPRIPLPLHLRGTDFQKEVWEILRTIPYGQTMTYGEIAGRLAGKRGGKKVSARAVGGAVGHNQISIIVPCHRVVGANGSLTGYAGGIEKKVKLLELEKADNQFLFPGGRARM
>NZ_CP041667.1|WP_143930047.1|1983685_1984582_-|LysR-family-transcriptional-regulator
MSRREGADVSSIWKYKYFVDVIENRSFTKAGNINYVSQTAISQNISSLEKMAGGKLINRGKGEVVPTELGQIVYRRAKEMLEIEARMTREIEQFRNREVTYIGIDSAINKKMWMTYEQVYDPNFLRVGEKMECYNLDNMIGARMMKNHELDVFIGYENQALEDEPGVAGENLTGSRIGVYVGKNTTIPYGPLRLDDLRGHRCYLASSYSCSVQEEARGRLEDGCRFIEVKNVETMKIKVEFNDAFAFVDSRYFWRGDGEIRQLADYEETCAIRLYYFRASEKKNVSKFIKILKDKMEE
>NZ_CP041667.1|WP_143930046.1|1982190_1983585_-|MFS-transporter
MGESTTAVKKKHPWGFYVCNLTFTFERLAYYGAKPILLLFLIKAVGEGGLGIDNAQAAVIAANLTAYTYLAPIIGGYISDRWLGARYAIPLGSVIMAIGYLIGWKAANAAMVNLMVIVISIGTGFFKGNLSAIQGRMYDDKSMLDSAFSIQYSFVNIGSFVGSVATGYLYLNTFKNGDVLGFRQCFFLSAVFCLIAAVWFVANWKSLQGQGKKPFKYLTDTQGNIIGEDSKKDKKKEKSAEPLTRAEKRRVWAIILVSAFSIIFWLFYYQNELALTIYMTEYVDMHLAGIEIAPGWINTSLNGLLCVALGGVMAAVWRKLSERPQGDLNMFQKIGLSFLFLGCAFGVVVLAEFTRGVGSPAGNKVSVLWMVGFVFLLTIGEMCFSPLRNAFVSKYAPKKYLSLLMGVITVATFCASKLSPYVQVIIENMNIFPVLVAIFILLLLCALFMVATNKKLNKLVEDED
>NZ_CP041667.1|WP_143930045.1|1980882_1982109_-|peptidase-T
MKAYERFLRYVNVWTTSDETSETVPSTQRQFELGRLLAQELKDIGVEKVELNDMCYLYAEIPATPGYEDKPAIGLIAHMDTVMDFPGKDIHPQFTKNYNGEDVKLGESGKVLSVKEFPHLKNMKGRTLITTDGTTLLGADDKAGIAEIITAADEILKENIPHGKICIGFTPDEEIARGAKNFDVERFGADFAYTLDGDIEGEIQFENFNASTAYFTIHGVNVHTGSAKGILVNSQLIGMEIQSRLPDERPETTEGYEGFFHLMAFNGNTEKTQMRYLVRDHSGEKFKQRHETLRRIQKEMNEKYGEGTVELEIAESYYNMREKIEPCMHLVDIAKKAITDAGLTPDISPVRGGTDGARLSFKGLPCPNLGTGGSAFHGPFEHITVEGMDLAVGIVKDILKSYAAYEEK
>NZ_CP041667.1|WP_143930055.1|1993899_1994223_-|50S-ribosomal-protein-L7ae
MSQNKALSLIGLAVKAGKVASGEFCTEKEVKSGRAALVIVAGDASGNTKKKFQNMCSFYRVPIYFYKDKDTLGHAMGKEFRASLAVTDEGFAKGIRKHLDTEENTIA
>NZ_CP041667.1|WP_143930056.1|1994209_1994488_-|DUF448-domain-containing-protein
MSKNKKIPLRKCVGCQEMRSKKEMIRVIRTSEQEFLLDATGKKNGRGAYLCPNRECLEKARKCKGLERSFGQAIPPEVYESLEKEMECLESE
>NZ_CP041667.1|WP_143930057.1|1994497_1995742_-|transcription-termination/antitermination-protein-NusA
MNTELLEALNLLEKEKDISKETLLDAIENSLLNACKNHFGKADNIKLIMDRETCDYQLYAEKEVVEEVEDKLEQISLEEAKEIDSTYEIGDIVRIPIESKSFGRIATQNAKNLILQKIREEERKVIYDQYFEKEKDIVTGIVQRYVGRNISINLGKADAMLTENEQVKGEVFKPTERIKLYVVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVRDGIVEIKSIAREAGSRTKIAVWSNDPDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDEKTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPENYMEMSEGVFEEEMYEEDYDESYEDESYEEGAYEEGYDESYEEAPEDAVYDGEADGEQESEEE
>NZ_CP041667.1|WP_143930058.1|1995760_1996228_-|ribosome-maturation-factor-RimP
MSKREVYEQKTEQLLQPIVDEYGFELVDVEYVKEGSTWYLRSYIDKTGGISIDDCEKVSRRLSDLLDQEDFIEDAYIMEVSSPGLGRPLKKEKDFKRSLGEEVEVKTYRMIDKQKEFTGILKDYDEDTVTITLADETEKTFDKGDIALIRLAFDF
>NZ_CP041667.1|WP_143930059.1|1996395_2000457_-|hypothetical-protein
MSIKWKKVIALIVAIILSAGSIMQTVAATPTEVENEVEVTDTPENGEKENITEDNQELGKDDSNVLDNQEEDKPFEDNSELSNNAKSQKQKNRLSVENESPFSGGNGTEESPYLISSDEELLAFAEVVNNQEGEYQTAHFALAKNIYLNDITDYDEWDKTAPKNEWPGVENFFGTFDGKQHTIYGLYMNSDSDRVGLFNSIEVYNWIDRKLVIKNLQLKNIYIKGQSYVGGLVGYAYCKVEITNCNVEGEVIGENSDIGGIGGFFSSGGNKGLTLTSVTNRAKVSGRTRTGGIWGGASIGNNLGSDTSGGGSEKIILKNCNNYGDILGTVSYTGGIIGQLRINLNCNGFDIERTQNFGTVTGKESTGGICGCIDVVAADSISASLEEICNEGNVFGEDCVGGICGEAALDRGDGYFRNVYNIGKIQGSSCVGGIIGVSTRFDVNSSYNVGIVTAETKVASLVGWANLYLGDIETVKVNNCYYAKGTAEVDTDGSASGVLELSEEEFKLESNFSGFDFVDIWKMGEKYPIFIWQDGNGSGNQETSKTDQFIIEKVKEYTSDAVYAQWEEISNSEISEETKFQRYTELFNQYGFLDAKEGIQYLSKTTNERYAYLTLTTDETYCAYNFYDWLHNTGKGAVARGLLIADGLIFNNELSDWTDLSTYIEGDYPGVVKYQDMLYDFMETASFDVEKMTYISDVSKLSGTVTEAGKVYADQLIKKLNECKNRNELRKALRSNEAIGVYSDVKTQGSDLNSFKLSFTLDETSGFGQFYKAMGYATKTLDIVDMSIQHVEDIIQLDSKLQVYEQYRTFLNEVELALDLPLEMRLAAKKILRDMKEGTWGELTDFAMDIVDKTSVKAKISDAILKAAIGQTGAATLNEFLLVLKIEAYFVNRIMDVGKLVQGVAYVEGYSTLSSHYREKLEESKKNFLTDQSAENAWDFYDNYSLLYMLRVKGEEAYLNMCKVEGLINIFTDCGYSEKEEVVKETIQTLEERCFFNLEEGIEIPESVQFALKSVISCPVDVSVYAPDGTLVAKLRDGEENNISNEYGQFSVVYRPYSGEYAKVLCFYKDADYKLEIAGVDKGLVSFELAEEKEGEITTYSFENQGIEAGNILRTSIEQIRGDGTVELDIDGNGVTENTIYLNKNPEETYRPVESLELKETFLILETGGSALMEVKISPDEATRQQVFWLTGDENIARVEEGKVSAISKGTTNIYCVSQDNRDQMAVCKVIVRSKGACTHPLEKVDEKKPDSEHTGNIEYWYCPECDRYYEDENGMIETSLEKVTLSKLSSQEGMGTNPDEQDNSADSEGMREQQQTPDTGDKGVEIWLLVCALSGIIIAGIGTGKMWRRHEK
>NZ_CP041667.1|WP_143930060.1|2000596_2000827_+|helix-turn-helix-domain-containing-protein
MISFEPFRKLLKEKGISTYYLRHKCGLYNLDSKTIQRLMADESVSTNTLNALCNIFDCDISEIVQFIPDNNISQNE
>NZ_CP041667.1|WP_143930061.1|2000871_2001765_-|NAD(+)-diphosphatase
MIQDIQPYQYDNVYHPALPQAQDFLLCYKGNRTLVKQNGEKIVFPTFQDAEKGWEKERESLYQGAVYLFSIRRPDESGGKETALKEIRFYLHPEVEGRRLEADGFAWEDNWLFRTAKPKYLRFAGITGWQLFRWYESHRFCGRCGVPMVRDEKERMMRCPECGLMEFPKICPAVIIGVTHGNKILMSKYAGRDFKEYALLAGFCEVGETIEETVKREVMEEVGLKVKNITYFKSQPWSFSDTLLMGFFCELDGDGTISIDQEELSMAEWFEREDMPVKEEDLSLTNAMMMAFKEGKI
>NZ_CP041667.1|WP_143930062.1|2001769_2004007_-|DNA-topoisomerase-4-subunit-A
MQNSQIIRTEYSDVMKKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMHELGLKADRPYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGTVLVDGHGNFGSIEGDGAAAMRYTEARLAKITQEAYLQDLDKDIVNFVPNFDETEKEPEVLPVRVPNLLVNGAEGIAVGMATSIPTHNLGEVIDGVKAYMKNNEISTRQLMKYIKGPDFPTGGIVVNKDDLLQIYETGTGKIKLRGKVEVEELKGGRSQIVISEIPYTMIGTGIGKFLNDVYGLVESKKTSDITDISNQSSKEGIRIVIELKRGADAENLINMLYKKTRLEDTFGVNMLAVADGRPETMGLKKIIEHHVDFQFELATRKYQTLLAKEKDKKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTNGVTENIKFKSSISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALMKEHEETLKNIERYEDILNNYESMADVIIQDLDQLKKEFSWKRRTQIENAQEAVFEEKKIEEQEVIFLMDRFGYAKTVDRATYERNREAADSENKYVISCLNTGKLCIFTADGKMHQVKVLDLPFGKFRDKGQPIDNVSNYDSTQEEIIYICDAEQMRFAQLLFATRMGMIKKVSGTEFQVSKRTIAATKLQAEDAVVSVQVVSDSQQVVLRTKEGYFLRFGAEEVSEKKKGAVGVRGIRLKKKDELEEVYLFEEGTETKVQFGDREITLNRLKAAKRDGTGTKAR
>NZ_CP041667.1|WP_143930063.1|2004022_2005945_-|DNA-gyrase-subunit-B
MAKKNTYDADSIAILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEHLAGYCSEIRVTLERDGSATVADNGRGVPVDLHAKGVSAERVVYTTLHAGGKFDDSVYKTSGGLHGVGSSVVNALSAYMDVEISRDGYVHHDRYERGVPVIELEDGLLPKTGKTRKTGTKINFLPDDTIFEKTRFRAEEVKSRMHETAYLNPELTIIFEDLRGETKEHIVYHEPEGILGFIRDLNSKKETVHEPVYFKGEAEGIQVEVVFQYVNEFHENVLGFCNNIYNGEGGTHLTGFKTTFTTVINQYARELGILKEKDANFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNPDASRAVSKVAGDEIVRYFDRNLENLKKVIGCAEKAAKIRKTEEKAKTNLLTKQKYSFDSNGKLANCESRDPSKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKILANAEIKTMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIAMPPLYKAMPKKGEEEYLYDDKALEHYRKTHDGPFTLQRYKGLGEMDAQQLWETTLNPESRMLKLVEIEDARMASGVTEMLMGTEVPPRRTFIYENALEAELDV
>NZ_CP041667.1|WP_143931257.1|2006021_2007149_-|stage-II-sporulation-protein-P
MLILYAGFHINIHLPEEARMELNRFLGSKAEDTYLTGFAYCKDGSGEAPSRWAAEAAMELVPLGSYVEGKTMTDTAIEDQETYEMILAQQANDENAVDENGNLIGEEEKADTAQAASSAIDTSLEKLKNFDYLIGNFYTVDGSTAVDPEQLNAEILLSKNMKIDTKSDGPKVLVYHTHSQEAFADSKKGDESASIVGMGDYLTELLNDTYHISTIHHKGVYDLIDGQLDRSRAYELAEPKIQKILEENPSIEVVIDLHRDGVGESTHLVTEINGKPTAQIMFFNGMSRTKANGSIDYLKNPYIEDNLAFSLQMQLAAAEKYPGFTRRIYLKSYRYNMHLKPKTLLVEAGAQTNTVEEMRNAMEVLAETLDTVLTP

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Crispr_ID: NZ_CP041667_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041667_5

2242633-2243738

TypeI

Consensus_repeat	Method
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CRISPRCasFinder
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CRT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	PILER-CR

16 spacers

cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP041667_5

>merge|NZ_CP041667|5|2242633-2243738|CRISPRCasFinder,CRT,PILER-CR
ATTTCAATCCACACTTCCCATGCGGGGAGTGACGAAACAGATTCTGCAGCTTTCGGAAACGGAGGTGATATTTCAATCCACACTACTCATACGAGGAGTGACCGCAACCACGGTCCAGGACCGCGTGTTCTATGCATTTCAATCCACACTCCCCATGCGGGGAGTGACCATATAGTATATACCGCCTATAACAAGTACCTATTTCAATCCACACTCCCCATGCGGGGAGTGACTCCTCTGGGAGAAGATCCTGAATCTCTTCTGTCAATTTCAATCCACACTCCCCATGCGGGGAGTGACACTATAAAAATACTAGCGCAAGTATATTTTTTCTATTTCAATCCACACTCCCCATGCGGGGAGTGACAGTTGTGGAAAGAAAAGGGAAGAACAGTTCCCTATTTCAATCCACACTCCCCATGCGGGGAGTGACGGGGCTCACTACCCCAAAACAGATTCGATTTTTAATTTCAATCCACACTCCCCATGCGGGGAGTGACATTGTACAGCTAGCAAAAGACCATGGATGGGAGCTATTTCAATCCACACTCCCCATGCGGGGAGTGACTGGAGGGGGCCGGCGGGAGCACAGACGGAAAGGCAATTTCAATCCACACTCCCCATGCGGGGAGTGACGCGATCTGGACGGAAATGTGCGGGGCTATTAACATTTCAATCCACACTCCCCATGCGGGGAGTGACAGATCGGTATCACGGCAAAAGGCGCCGTAAAGGTAATTTCAATCCACACTCCCCATGCGGGGAGTGACGGAGTATGAATATGGGAAATATTATCTAGAAGGAATTTCAATCCACACTCCCCATGCGGGGAGTGACCGAGTGCCAAAAATATTTGAGGCCGAGGCTGAGATTTCAATCCACACTCCCCATGCGGGGAGTGACATTGTACAGCTAGCAAAAGACCATGGATGGGAGCTATTTCAATCCACACTCCCCATGCGGGGAGTGACACACTGCCGCTACCGTATATGCAACAGAAAACGATTTCAATCCACACTCCCCATGCGGGGAGTGACGAGCAGCCGCCATCACTTGAGACGGCGGCACTGTATATTTCAATCCACACTCCCCATGCGGGGAGTGAC

>NZ_CP041667|5|5|2242633-2243738|CRISPRCasFinder
ATTTCAATCCACACTTCCCATGCGGGGAGTGAC	GAAACAGATTCTGCAGCTTTCGGAAACGGAGGTGAT
ATTTCAATCCACACTACTCATACGAGGAGTGAC	CGCAACCACGGTCCAGGACCGCGTGTTCTATGC
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CATATAGTATATACCGCCTATAACAAGTACCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	TCCTCTGGGAGAAGATCCTGAATCTCTTCTGTCA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ACTATAAAAATACTAGCGCAAGTATATTTTTTCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	AGTTGTGGAAAGAAAAGGGAAGAACAGTTCCCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GGGGCTCACTACCCCAAAACAGATTCGATTTTTA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ATTGTACAGCTAGCAAAAGACCATGGATGGGAGCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	TGGAGGGGGCCGGCGGGAGCACAGACGGAAAGGCA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GCGATCTGGACGGAAATGTGCGGGGCTATTAAC
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	AGATCGGTATCACGGCAAAAGGCGCCGTAAAGGTA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GGAGTATGAATATGGGAAATATTATCTAGAAGGA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CGAGTGCCAAAAATATTTGAGGCCGAGGCTGAG
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ATTGTACAGCTAGCAAAAGACCATGGATGGGAGCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ACACTGCCGCTACCGTATATGCAACAGAAAACG
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GAGCAGCCGCCATCACTTGAGACGGCGGCACTGTAT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC

>NZ_CP041667|5|1|2242633-2243738|CRT
ATTTCAATCCACACTTCCCATGCGGGGAGTGAC	GAAACAGATTCTGCAGCTTTCGGAAACGGAGGTGAT
ATTTCAATCCACACTACTCATACGAGGAGTGAC	CGCAACCACGGTCCAGGACCGCGTGTTCTATGC
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CATATAGTATATACCGCCTATAACAAGTACCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	TCCTCTGGGAGAAGATCCTGAATCTCTTCTGTCA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ACTATAAAAATACTAGCGCAAGTATATTTTTTCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	AGTTGTGGAAAGAAAAGGGAAGAACAGTTCCCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GGGGCTCACTACCCCAAAACAGATTCGATTTTTA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ATTGTACAGCTAGCAAAAGACCATGGATGGGAGCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	TGGAGGGGGCCGGCGGGAGCACAGACGGAAAGGCA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GCGATCTGGACGGAAATGTGCGGGGCTATTAAC
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	AGATCGGTATCACGGCAAAAGGCGCCGTAAAGGTA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GGAGTATGAATATGGGAAATATTATCTAGAAGGA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CGAGTGCCAAAAATATTTGAGGCCGAGGCTGAG
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ATTGTACAGCTAGCAAAAGACCATGGATGGGAGCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ACACTGCCGCTACCGTATATGCAACAGAAAACG
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GAGCAGCCGCCATCACTTGAGACGGCGGCACTGTAT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC

>NZ_CP041667|5|1|2242768-2243738|PILER-CR
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CATATAGTATATACCGCCTATAACAAGTACCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	TCCTCTGGGAGAAGATCCTGAATCTCTTCTGTCA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ACTATAAAAATACTAGCGCAAGTATATTTTTTCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	AGTTGTGGAAAGAAAAGGGAAGAACAGTTCCCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GGGGCTCACTACCCCAAAACAGATTCGATTTTTA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ATTGTACAGCTAGCAAAAGACCATGGATGGGAGCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	TGGAGGGGGCCGGCGGGAGCACAGACGGAAAGGCA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GCGATCTGGACGGAAATGTGCGGGGCTATTAAC
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	AGATCGGTATCACGGCAAAAGGCGCCGTAAAGGTA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GGAGTATGAATATGGGAAATATTATCTAGAAGGA
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	CGAGTGCCAAAAATATTTGAGGCCGAGGCTGAG
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ATTGTACAGCTAGCAAAAGACCATGGATGGGAGCT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	ACACTGCCGCTACCGTATATGCAACAGAAAACG
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC	GAGCAGCCGCCATCACTTGAGACGGCGGCACTGTAT
ATTTCAATCCACACTCCCCATGCGGGGAGTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041667.1\|WP_143930280.1\|2230954_2233309_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|376899
NZ_CP041667.1\|WP_143930298.1\|2250338_2252399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143930293.1\|2245972_2246884_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP041667.1\|WP_143930289.1\|2241696_2242470_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP041667.1\|WP_143930287.1\|2239387_2240251_-\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|133037
NZ_CP041667.1\|WP_143930292.1\|2245307_2245973_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP041667.1\|WP_143930297.1\|2249731_2250199_-\|DUF3990-domain-containing-protein	unknown	unknown	gnl\|CDD\|379042
NZ_CP041667.1\|WP_143930284.1\|2235892_2237266_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240543
NZ_CP041667.1\|WP_143930294.1\|2246884_2248621_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP041667.1\|WP_143930295.1\|2248617_2249280_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP041667.1\|WP_143930291.1\|2244279_2245311_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP041667.1\|WP_143930282.1\|2234127_2235075_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP041667.1\|WP_143930285.1\|2237318_2238536_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP041667.1\|WP_143930283.1\|2235129_2235804_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP041667.1\|WP_007045947.1\|2255205_2255409_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143930296.1\|2249307_2249748_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143930288.1\|2240348_2241521_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143930281.1\|2233355_2234033_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP041667.1\|WP_143930290.1\|2243949_2244240_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP041667.1\|WP_143930286.1\|2238630_2239278_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP041667.1\|WP_143930280.1\|2230954_2233309_-\|FtsX-like-permease-family-protein	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	2.80903e-08
NZ_CP041667.1\|WP_143930293.1\|2245972_2246884_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.26173e-148
NZ_CP041667.1\|WP_143930289.1\|2241696_2242470_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.10206e-18
NZ_CP041667.1\|WP_143930282.1\|2234127_2235075_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.84262e-41
NZ_CP041667.1\|WP_143930292.1\|2245307_2245973_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.65486e-27
NZ_CP041667.1\|WP_143930297.1\|2249731_2250199_-\|DUF3990-domain-containing-protein	gnl\|CDD\|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.89911e-67
NZ_CP041667.1\|WP_143930284.1\|2235892_2237266_-\|MATE-family-efflux-transporter	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.23055e-133
NZ_CP041667.1\|WP_143930295.1\|2248617_2249280_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.43778e-105
NZ_CP041667.1\|WP_143930291.1\|2244279_2245311_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP041667.1\|WP_143930287.1\|2239387_2240251_-\|glycosyltransferase-family-8-protein	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	1.01579e-72
NZ_CP041667.1\|WP_143930285.1\|2237318_2238536_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.13606e-51
NZ_CP041667.1\|WP_143930283.1\|2235129_2235804_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.90391e-72
NZ_CP041667.1\|WP_143930294.1\|2246884_2248621_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP041667.1\|WP_143930281.1\|2233355_2234033_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.39655e-75
NZ_CP041667.1\|WP_143930290.1\|2243949_2244240_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.97601e-28
NZ_CP041667.1\|WP_143930286.1\|2238630_2239278_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.32164e-16

>NZ_CP041667.1|WP_143930289.1|2241696_2242470_-|alpha/beta-fold-hydrolase
MPYFTYQSKQIYYSEAGAGKPLLFLHGNTASSKMFEPLLPLYTDNFKVILIDFLGNGRSDRVEKFPASLWQEWAKQTVALLEHLYGEKIVEEKVSIAGSSGGAWAAINAGLIRPDLVDRIVADSFDGRTLGEGFVENLLKERESAKKDEQAAGFYQWCQGEDWEQVVDKDTEALVQCGKQKLPLFVRPLSELQVPLMLIGSLGDEMTRENLQKEYEEIAVETRGQVCLFPEGGHPAMYSNAEEAAEAICRFLKEDCL
>NZ_CP041667.1|WP_143930288.1|2240348_2241521_-|hypothetical-protein
MKKITEWMRTHKLYATTAAVLIMVLLSASAAAASGVFSPADQETGREKAGSSTSDTVDLSLCIMADKNWDENSTPAVAHIAGADESNTDVDFYHAILPGSEEGEGTSSVSLEAGAYKVEFLSPVNQDGSVYKTGSAQNIAVSTDTEDVPAIDCTLTLIPADQVTDEMLQDIIDQTKAAIENGDETLKGDGGQAVLDKLEENVAKNPNVSDQTKQDAAAADTKVNVYDDPKTATSADNKAASSKDTSQNTSSGTDSGRSGSAGSKGSGSNSSSDQTAKPSHTHKWKSHTAKRWVSNWVTVVDTPARTVYGARLYTENSDGTWTANGETYWFENGFTSSDLAAIIKDKMKNEGYIGNYQNVSKTVPAVTHQEDQGYYEEYVDYQYCGCGATR
>NZ_CP041667.1|WP_143930287.1|2239387_2240251_-|glycosyltransferase-family-8-protein
MEGQTEKGGLQLNLLVTLDQNYFPQLEVLLTSLELNDPGEKFTLYLLQNHLPEELLTRTANWCHARGYEFCPVQMNGEMFRKAPANDRYPVEMYYRLLAGQMLPEHVDKILYLDPDILVINPLRELWEMELEENLFAAAAHTGKTEFANDMNRIRLGVEHDYYNSGVLLMNLKLARKEILPEKLFQYVETHRKELVLPDQDLLNALYGERILPLDDAVWNYDARNYNNYMMRSGAKYNSKWVMEHTSILHFCGKAKPWKPGYFYRFGMLYLHYQRLAARSWEASQEE
>NZ_CP041667.1|WP_143930286.1|2238630_2239278_-|TetR-family-transcriptional-regulator
MARNKYPEETEERILDTAQRLFLEKGFENTTIQDIVDELGGLTKGAVYHHFKSKDEIMDAVGDRMFFANNPFEAVQGREDLNGLEKLREMIRLNQADTARVDLNIQAIPITRNPRVLMEMIKSNRRILTPYFQKLIEEGNQDGSIHTEYTREISELLPLLTSLWMIPSIFPATKEEMKHKFRFLGDMLEKLGIPVMNEELYQLVDDFFEKMPQED
>NZ_CP041667.1|WP_143930285.1|2237318_2238536_-|MFS-transporter
MKQRLFTRNFALLVLGQISSLVGNYSLKFALSMYVLEQTGEASVFAGMLAAAMVPAIILSPFGGILADRANRRNIMVELDTISGGAVLITCAVFPLGDKIFLVGLLLFVLSVLGAFESPTVQACVPQMLSGDNLLKGNAVVSQVQAVAGLVTPFLGSVFYTAFGIRTVFYGAAVCFFITACFECFIRLEGQKPEKKMGLWEIVKADFRESMGFLRGERTGVLRLLALAAAVSMFVVGVVSVGFPYLIRTTLGLSPEHYGAAESLAGVAAVLGSLAAGLLGQKIGLRHFPFLIEGTGLLFLPAGIGFLLPVGILGKYGILVAAVCGCQFVCSMFSIYALSAIQEGTPERLTGKVMACVYTISMCAQPLGQVLYGILFDVFSAQVYWVLIPTGLLICVIGLSAGRMK
>NZ_CP041667.1|WP_143930284.1|2235892_2237266_-|MATE-family-efflux-transporter
MKKERDRTLKRNKYEIDMCNGSIMDKLISFSLPLMLSSILQLLFNAVDIIVVGRFSGSQALAAVGSTTALINIFTNLFIGVSLGANVLAARYYAAGQDKEMSEAVHTAITLALVSGILMAFVGVGAARPALSLMNTPQDVIGQAAVYMRIYFLGMPFFMLYNYGAAILRAVGDTKRPLLFLLAAGMANVGLDLLLVVVIPLGVAGVAIGTVTSQMISCILVLWCLHRTESSYRLRFSKLKIRSVYLKRIFQVGIPAGIQSTVINFSNAMLQSSVNSFGATAMAGYTAANNILSFLYVAVNAVTQACMSFTSQNYSVGKQKRMDRVLLDCGILSVGVSLVLGVGAYLFGSQVLGIYTSDTDVVQCGLEILSITTVPYFMCGIMDLLPGALRGMGHSAVPMVLSVIGTVGTRIVWIYGFFPQHRSLHFLFISYPASWILTIIMQAVCFWFVRKKIVKSL
>NZ_CP041667.1|WP_143930283.1|2235129_2235804_-|response-regulator
MTVKIGIIEDDEALREGLKLTFELEGLEVASAGNVKEGWKLLEEEGCGLVILDCNLPDGSGFDLVRRLREISDLPVLMLTARDSEMDEVKGLELGVDDFMSKPFSLAVLQARVRKILKKQEAPRRLSSGGITVDLGSGEVLRMGEKVALSTTEQRLLVLFMEHKGQILAKDQILSRIWDESGNYVDENTLAVSIRRLRVKIEEDPGKPRRIKTVHGMGYVWQEN
>NZ_CP041667.1|WP_143930282.1|2234127_2235075_-|HAMP-domain-containing-histidine-kinase
MEAVIGIGIINIAAALAGLLYFRRRYFLLYQTVQKLQKAVLEGEKIGKESDRDLPEDVLRDGFWRIQKKFQMEAEGARMEKQAVQGLISDLSHQLKTPLANIRLYQELLKNPGLDLKKRQGLQERLDEQTDKLDWLLSALFQMVDLERGVAALAAEEAPVLPALRQAVEAVLPKAERKEIQFQVEESRQRELAETELLFDPKWTEEVFINILENGVKYSPKGSVIHLSMECYETYGAVQIRDEGPGISKDEYSKIFQKFYRGSKTKEQEGWGIGLYLSRLVLEREQGYIKVESEEGKGSTFSVFLPIARQGGKKK
>NZ_CP041667.1|WP_143930281.1|2233355_2234033_-|ATP-binding-cassette-domain-containing-protein
MKMEAVKVTDVEKSFTDGMGREKVLKNVTFSLEEGTFTALTGISGAGKTTLLHLLAGFQKPDKGEILLAGRQIQKMKEKEAAPFRRRHIAMVFQEGALLPGLTVEENMILPVVMDTGRLLDEEKLNQILETLSLTGQRNRYPAELSGGERQRAVFGRALFSEAELILADEPAARLDTRQSLELMGTLKRCAKVWHRTILMATHDLDLAQICDETLELRDGCIWSK
>NZ_CP041667.1|WP_143930280.1|2230954_2233309_-|FtsX-like-permease-family-protein
MKIIWKVIKTEIRQKPGRFAALVTGMTAAVFLITVVTAFSNSCLHSMIEQEKKENGPYEAVFHNLTEEQAERLSESSQIKQTWKIKDCREEDTEEGRACYGAAFRRISLSIFERSQDVGVEIGMDGLPLEEQPILFSRPNWSVTSSFDITFNERLLGYYGINAFQTTAGSLVAIILMDVVIVLFAAALLYYVVLSGLEEKLKTLGLLDGIGISDRQKRLYIYGENLLAGLLAVPLGTLLGMGGLAVSIRYLNQWVLPTQKVEMHVSPIWLLAVFFGCLALVVLSGTGLYARARKERILNLISGYDEEEEVNRTAVLLKAKRHFFKVETLLAVKNVIMNHKNYAVSATLLVIALSVFLNGIMYIRGMTAVTDEVPRYPPISMWIQGNGVDEADFEKLAEELRGFAEVERVSLVKEAKEYTALEGLTKTEIQEYLKLFQAESALDGYEMLRDYEWENLAEEEGLKNIVRVIGVDDAVFDEYLGGAKRAGQVPEDGAILFRADLEGQEEAAEFPVMVDQELHMLPVACINPEVEEEVLLPEYLLTAEEAKKGIGTYKTMEAVEVFVRQDTFDRLLGDDKDPSVYLEISLSRDQGKRVSLNEILYPDQVTERMKEDDEIRQKIQKAGEALGITHLQVFSFAEEYHRSFFQGGKGMEILLVTAVVSASWVAAVLVILQKDAACLRRRKKEFALLLTIGMTRGKIFKMVFVEHLLYAFVGIAAGIPLSLFFLSGIYGDGGARQMASAWDVPADLVVWQVVLTLCVVLIPFFYTVRELRNIDVISVIRKEE
>NZ_CP041667.1|WP_143930290.1|2243949_2244240_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTETAAGKKRLRKVAKQCTNYGRRVQNSVFECIVDHAQCVALKAILTEIIDEDVDSLRFYYLGNKYKTKVEHVGVDRGIAVDDTLIL
>NZ_CP041667.1|WP_143930291.1|2244279_2245311_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVASENSYLSLDGENVVVLEEQKEVGRVPLHNLEGIVSFGYRGTSPALMGVCAERNISLCYLTPQGKFLARISGRVKGNVILREQQYASKNDEKISLEIAKNCILGKVYNARWVLERAVRDHALQMDVDKVKTASAFMKNSLEQIQNSESKEQLRGYEGEAASIYFGVFDQLILQQKKDFSFHGRNKRPPVDKVNALLSFVYTLLTNNITSALESVGLDPYVGYLHTDRPGRVSLSLDLIEELRAVLADRFVITLINKKIVSGKNFSTKENGAVLMDEELRKRVLIEWQAKKKEIITHPYLKEKVEWGMVPYVQAMLLARYLRGDLDGYPVFLWK
>NZ_CP041667.1|WP_143930292.1|2245307_2245973_-|CRISPR-associated-protein-Cas4
MEYSEDDYLMISGIQHFKFCRRQWALIHIEQQWEENVHTVVGELMHKKVHDPLLKEKRKDTITARALPVSSRELGISGECDLVEFHKCEDGIKLYGHRGLYSVYPVEYKKGKPKLSEEDILQLTAQAMCLEEMFSAQVPEGAIFYGETRRRERIEITEELREEVRSMFQEMHNYYARKYTPKVKYSKSCNACSLKDICLPKLGKAVSVKTYIDQMLKEEEI
>NZ_CP041667.1|WP_143930293.1|2245972_2246884_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEVIKNRYEFVVLFDVENGNPNGDPDAGNMPRIDPESGLGLVTDVCLKRKIRNYVETVKEDEKGYQIYIKEDVPLNRSDREACKDLGIEETDDKKVTEALKKLKKSDPDTDVKLRDYMCSNFYDIRTFGAVMTTFVKASLNCGQVRGPVQIGFARSIDPVISQEATITRVAITTEKDAENKSTEMGRKSIVPYGLYRAEGYISANLARKVTGFSEDDLTLLWEAIINMFENDHSAARGKMAVRELIVFKHSKELGDCPAYKLFDAVEVKKNEDVEYPRRYQDYTVEIHEDRIPEMVEVKRMI
>NZ_CP041667.1|WP_143930294.1|2246884_2248621_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALAEHYDRLAEQGKVSREGWCMAKVSYGINLSKEGEVTGIIPLKTEEERGKKKVWAPQVLTVPEMVTRSSGVSANFLCDNSKYLLGIDAEGTNQRLTDCFEAAKEKHLTLLKDVNSEMAQAVCRFFESWDPRRAEENNEIQDHWDDITDGGNLIFCREINYAQDDPAIQEAWERARDSSDESGQMGICLVTGKQAEISRIHKTIKGVPGAQSSGAALVSFNAPAFESYGKEQSYNAPVGRYAEFAYTTALNYLLGQREYTFQLGDSMILFWAEDAKEEYQAAFFSCADPKRDNQKEIKGIFDNLKQQRQVQFDDVVLNLEQKFYILSLAPNAARLSVRFFYQDSFGNILGNLAKHYERMSIVKPSWAGEEYLGIRSMLSETVNQNSKDKTPVPNMAALVLQAILSGARYPASLYTDVLIRIRAEQGNITWGRAGIIKAYLIRNMGWKEGENYMGLNEESQDRAYVLGRLFSVLESIQLDTNPGIKATIRDRYFNAACATPASVFPILVKLKNSHMKKLEREKGSAKIYYEKLLTEIMGKIEGEFPARLSLEEQGKFILGYYHQVQKKYEKREEN
>NZ_CP041667.1|WP_143930295.1|2248617_2249280_-|type-I-C-CRISPR-associated-protein-Cas5
MGMGVKVRVWGQYALFSRPEMKVERCSYDVMTPSAARGILEAVYWHPGMKWVIDKIHVVNPIRFTSVRRNEVKSKILASNVLQVYNGADKPLYISAKSDIVQRASLLLRDVEYVIEAHFEMTDKANETDNPGKFKDIVMRRLRRGECFHMPYFGCREFPANFALCEEDDIKTAYDVVEEKDLGFMLFDLDYSDQNDIKPMFFRAVMRKGILDLRDCEVVR
>NZ_CP041667.1|WP_143930296.1|2249307_2249748_-|hypothetical-protein
MGRKNNNALFFTCSLIEYIGRSTKRKRGKVTDFLGKERIERIYEYADVFHCDPIEKTAAEFIEEAHITEGTFDNVKDCRYTVPGYWDIGEVYERLIEDVYEEENIVNGIWEVYHSWIDAQISDYNTDFYYQPRDYIAECYKEGVIL
>NZ_CP041667.1|WP_143930297.1|2249731_2250199_-|DUF3990-domain-containing-protein
MILYHGSREIVEYPEIRKARFNKDFYFGFYCTQYEEQAKRWASRYGEIGYLNKYEYVPNHSLTYLVFEKMTEEWLDFVISCRSGISHTYDIVEGPMADDTIYNYIQNYMDGKISRAAFWELAKFKYPTHQISFHSISALDTLKFIGSEVVYGKKK
>NZ_CP041667.1|WP_143930298.1|2250338_2252399_-|hypothetical-protein
MRQKQEAVKNTDIQKQKNEWRKKGWTIPDLRGGKQVWYDLVKRLVELVEIGEAYDLDMIPDTGNLVNGQTWRVYTPFLKGIGLVYNHAGKLVLSDKGQEFVEKPTKKKLADMIQERVRLFGEMLDVINVTPITVEEADQKICKKYGLNWKNLSNTRKRMDWLEVLGLIEAIGNRKWKVTESGKEALKKWCIINPEVLEHEDSDIDDIEIADPPIEIEGLLQKLRDHPEMHKKRCTYNIWAPSPNRIENLRIIIQVASNKISKKELFEFIEKEFELKLSSVESMLPFLKASGLLEEVGRNVYLATAAAQAWVETGNELDFIRILHIHMRFVGEILLYAQNDIVRNDIYHIGKNYGMNKEKTRWMTGFLLEAGLLDEPRYLHLKTTKMGKTFAETLPLEKTVQYDITEESAEEKVSISDSESNKLDIISERLRVAAVNPAAEGKLSGVAFEEAISDLFSYMGFRAEHIGGSGNTDVIVKWKQNDDMVVAILDGKSKSSGQVSHGDISDIALDTHKEKNNAEYVAVIGPGFSGETIKNFAIKKEYALITDKQLIEVANASQELGLSLEEIALMFQVPNGFSRLEEIISFKRREMDIISEIIRQFCNEQELLESLSPRDLFLLLRNSSVSPLLEELIGGFDILSGNSIGILKRVDKSGSPENVRYILHNENTVINKIRALANAIEQGMQL
>NZ_CP041667.1|WP_007045947.1|2255205_2255409_+|hypothetical-protein
MWENLNFWIFLQCQLRRNPSHSLYLSVYIEFVFSKMQTTPRIGFWLDNSNQTPQQTAENILNARKPV

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Crispr_ID: NZ_CP041667_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041667_6

2317193-2317496

Orphan

Consensus_repeat	Method
ATATTTCAACCCACATCGCCAATGA	CRISPRCasFinder
CATCGCCAATGACGGCGATGAC	CRT
ATTTCAATCCACATCGCCAATGACGGCGATGAC	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP041667_6

>merge|NZ_CP041667|6|2317193-2317496|CRISPRCasFinder,CRT,PILER-CR
ATATTTCAACCCACATCGCCAATGATGGCGATGACTCCAGGCAATCCCGTGGAACTGGTGGAGCCCATATTTCAATCCACATCGCCAATGACGGCGATGTCGCTGCTCCGGAGATGATACAATGATTTTGGTTTTAGGATTTCAATCCGCATTGCCAATGACGGCGATGACGGAAATACTCTTGTTGCCTCACTGTATTGCATGGATTTCAATCCACATCGCCAATGACGGCGATGACATAGGGTTGATTCCTAACTTTTCACGATACTTGTATTTCAATCCACACGCCAATGACGGCGATGAC

>NZ_CP041667|6|6|2317193-2317420|CRISPRCasFinder
ATATTTCAACCCACATCGCCAATGA	TGGCGATGACTCCAGGCAATCCCGTGGAACTGGTGGAGCCC
ATATTTCAATCCACATCGCCAATGA	CGGCGATGTCGCTGCTCCGGAGATGATACAATGATTTTGGTTTTA
GGATTTCAATCCGCATTGCCAATGA	CGGCGATGACGGAAATACTCTTGTTGCCTCACTGTATTGCAT
GGATTTCAATCCACATCGCCAATGA

>NZ_CP041667|6|2|2317206-2317496|CRT
CATCGCCAATGATGGCGATGAC	TCCAGGCAATCCCGTGGAACTGGTGGAGCCCATATTTCAATCCA
CATCGCCAATGACGGCGATGTC	GCTGCTCCGGAGATGATACAATGATTTTGGTTTTAGGATTTCAATCCG
CATTGCCAATGACGGCGATGAC	GGAAATACTCTTGTTGCCTCACTGTATTGCATGGATTTCAATCCA
CATCGCCAATGACGGCGATGAC	ATAGGGTTGATTCCTAACTTTTCACGATACTTGTATTTCAATCC
ACACGCCAATGACGGCGATGAC

>NZ_CP041667|6|2|2317261-2317496|PILER-CR
ATTTCAATCCACATCGCCAATGACGGCGATGTC	GCTGCTCCGGAGATGATACAATGATTTTGGTTTTAGG
ATTTCAATCCGCATTGCCAATGACGGCGATGAC	GGAAATACTCTTGTTGCCTCACTGTATTGCATGG
ATTTCAATCCACATCGCCAATGACGGCGATGAC	ATAGGGTTGATTCCTAACTTTTCACGATACTTGT
ATTTCAATCCACACGCCAATGACGGCGATGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041667.1\|WP_143930312.1\|2329505_2330117_+\|DUF1836-domain-containing-protein	unknown	unknown	gnl\|CDD\|378076
NZ_CP041667.1\|WP_070087584.1\|2308337_2309204_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|336409
NZ_CP041667.1\|WP_143930311.1\|2327560_2329309_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041667.1\|WP_002604483.1\|2311897_2313679_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|367119
NZ_CP041667.1\|WP_070087582.1\|2306264_2306687_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP041667.1\|WP_002604486.1\|2315258_2315477_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_087272998.1\|2311689_2311830_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372288
NZ_CP041667.1\|WP_143930305.1\|2320026_2321442_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP041667.1\|WP_083262785.1\|2306657_2306888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_143930313.1\|2330126_2330855_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP041667.1\|WP_143930310.1\|2325652_2327557_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041667.1\|WP_143930308.1\|2322943_2325184_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP041667.1\|WP_143930307.1\|2322613_2322856_-\|DUF4366-domain-containing-protein	unknown	unknown	unknown
NZ_CP041667.1\|WP_070087583.1\|2306939_2307758_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349980
NZ_CP041667.1\|WP_143930306.1\|2321555_2322479_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NZ_CP041667.1\|WP_143930309.1\|2325186_2325579_-\|DUF3783-domain-containing-protein	unknown	unknown	gnl\|CDD\|378901
NZ_CP041667.1\|WP_002604484.1\|2313675_2314149_-\|PcfB-family-protein	unknown	unknown	gnl\|CDD\|378920
NZ_CP041667.1\|WP_002604485.1\|2314185_2315130_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP041667.1\|WP_143930304.1\|2317629_2318916_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP041667.1\|WP_070087585.1\|2309394_2311314_-\|TetM/TetW/TetO/TetS-family-tetracycline-resistance-ribosomal-protection-protein	unknown	unknown	gnl\|CDD\|223556

Protein	Function_ID	Function_description	E-value
NZ_CP041667.1\|WP_143930312.1\|2329505_2330117_+\|DUF1836-domain-containing-protein	gnl\|CDD\|378076	pfam08876, DUF1836, Domain of unknown function (DUF1836). This family of proteins are functionally uncharacterized.	5.55149e-38
NZ_CP041667.1\|WP_070087584.1\|2308337_2309204_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|336409	pfam06445, GyrI-like, GyrI-like small molecule binding domain. This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.	7.85146e-25
NZ_CP041667.1\|WP_002604483.1\|2311897_2313679_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|367119	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.	4.24523e-46
NZ_CP041667.1\|WP_070087582.1\|2306264_2306687_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	5.43501e-06
NZ_CP041667.1\|WP_087272998.1\|2311689_2311830_-\|hypothetical-protein	gnl\|CDD\|372288	pfam12750, Maff2, Maff2 family. This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein may contain transmembrane helices.	8.25247e-19
NZ_CP041667.1\|WP_143930305.1\|2320026_2321442_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.74683e-121
NZ_CP041667.1\|WP_070087585.1\|2309394_2311314_-\|TetM/TetW/TetO/TetS-family-tetracycline-resistance-ribosomal-protection-protein	gnl\|CDD\|223556	COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis].	5.61657e-143
NZ_CP041667.1\|WP_143930310.1\|2325652_2327557_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.58868e-172
NZ_CP041667.1\|WP_143930308.1\|2322943_2325184_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041667.1\|WP_143930311.1\|2327560_2329309_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.21936e-166
NZ_CP041667.1\|WP_070087583.1\|2306939_2307758_-\|RNA-methyltransferase	gnl\|CDD\|349980	cd18107, SpoU-like_AviRb, SAM-dependent rRNA methylase related to AviRb. AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	3.83984e-64
NZ_CP041667.1\|WP_143930313.1\|2330126_2330855_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.52152e-76
NZ_CP041667.1\|WP_143930309.1\|2325186_2325579_-\|DUF3783-domain-containing-protein	gnl\|CDD\|378901	pfam12646, DUF3783, Domain of unknown function (DUF3783). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 60 amino acids in length.	6.34378e-14
NZ_CP041667.1\|WP_002604485.1\|2314185_2315130_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	1.2626e-05
NZ_CP041667.1\|WP_002604484.1\|2313675_2314149_-\|PcfB-family-protein	gnl\|CDD\|378920	pfam12687, DUF3801, Protein of unknown function (DUF3801). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.	5.82486e-26
NZ_CP041667.1\|WP_143930306.1\|2321555_2322479_-\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.25052e-69
NZ_CP041667.1\|WP_143930304.1\|2317629_2318916_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.26618e-56

>NZ_CP041667.1|WP_002604486.1|2315258_2315477_-|hypothetical-protein
MYFTKGKQRAFELLMQQKPGFDRYQSGCAGDDEDCGTCRFYRPGWKYEFCVFKECPYCPGKRTRKTHASMDK
>NZ_CP041667.1|WP_002604485.1|2314185_2315130_-|helix-turn-helix-domain-containing-protein
MAVFRVERNTGYTVMSNHHLRNKELSLKAKGLLSQMLSLPEDWDYTLAGLSHINREKIDAIREAVKELEKAGYIVRSRERDEKGRLRGADYVIYEQPQPREPEAATSGGQPPILDLPTLENPTLDNPTLEKPTQEKPTLENPTQLNKDILSKEQSITDLSSTDSIPFHSLNPLPFAHGEAATPPERKRTEAKSNSAVEIYREIIKDNIEYDHLIQNCKIDKDRLDEIVDLMLETVCTARKTIRIAGDDYPAELVKSKFLKLNSSHIEFVLDCMRENTTKVRNIKQYLKAVLFNAPSTIDSYYTALVNHDLYGGE
>NZ_CP041667.1|WP_002604484.1|2313675_2314149_-|PcfB-family-protein
MQEEVTQKTIALYVKVGKGAARLTEQALQKAIQKFLEQKSKPAHGKQTMRQLMKQNAGVSNIEITDSNIKAFESTAKKYNIDFSLKKVKGEQTRYLVFFKGRDADVMTAAFQEFSAKKLNREKKPSIRKALAAAKDKAKQLNAARDKVKKMDRGREI
>NZ_CP041667.1|WP_002604483.1|2311897_2313679_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MKQINYKKLILPNIPYVFFVYLFDKVGQAVRLAPGADISAKILNITQGFSAAFENALPSVYPLDLLVGIVGAVIIRLIVYVKGKNAKKYRKGAEYGSARWGNAEDIKPYIDPDFQNNIILTQTERLTMNSRPKQPKYARNKNVVVIGGSGSGKTRFFVKPNLMQLHSSYVLTDPKGTVLIECGKLLQRAGYRIKVLNTINFKKSMHYNPFVYIRSEKDILKLVNTLIANTKGEGEKSAEDFWVKAERLLYCALVGYIWYEAPAEEMNFITLLELINASEAREDDEEYQSPVDLLFADLEERDPDHFAVKQYRKYKLAAGKTAKSILISCGARLAPFDIKELRDLMSYDELELDTLGDRKTALFLIMSDTDSTFNFVIAMLQSQLFNLLCDKADDEYGGKLPVHVRCLLDEFANIGQIPQFEKLIATIRSREISASIILQSQSQLKAIYKDAAEIILDNADSTLFLGGRGKNAKDISENLGRETIDSFNTSENRGTQVSHGLNYQKLGKELMTQDEIAVMDGGKCILQLRGVRPFFSDKYDITQHPNYKYLSDFDKKNAFDVERYMSTRPAIVKPDEPFDIYEIDLSDEDAAAE
>NZ_CP041667.1|WP_087272998.1|2311689_2311830_-|hypothetical-protein
MDFFNSAVDVLQTLVIALGAGLGIWGGINLMEGYGNDNPGANAHVS
>NZ_CP041667.1|WP_070087585.1|2309394_2311314_-|TetM/TetW/TetO/TetS-family-tetracycline-resistance-ribosomal-protection-protein
MKIINIGILAHVDAGKTTLTESLLYTSGAVPELGSVDKGTTRTDTMLLERQRGITIQTAVTSFGWKNYKINIVDTPGHMDFLAEVYRSLAVLDGAILVVSAKDGVQAQTRVLFHALQKMKIPTIIFVNKIDQEGIDLQSVYQNIREKLSDDVMVMQDVSLTPEVSLTDIEDIEKWDSIIAGNDELLEKYIAGEPLKIQDLQREKCRRMQNGSLFPIYHGSAKNNIGTEKLIEVIAETFTSGADNDQSELCGSVFKIEYTDQKKRLVYLRLYSGTLHLRDTILLPQNQKLKITEMRIPSNGEIIPADTACCGEIVILTNDTLKLNDTLGNVELLPRKAWEKNPIPLLRTTVEPQNQEQRDLLLNALTEIADTDPLLHYYVDTITHEIIISFLGKVQLEVVCSLLVERYHVNINVKEPTVIYLERPLKTASYTIHIEVPPNPFWASIGLTVTPLPAGSGTRFKSKVSLGYLNQSFQNAVMEGVRYGMEQGLYGWEVTDCEICFDYGVYYSPVSTPADFRSLAPIVLEQALKRAGTQLLEPYLSFTLFAPQEYISRAYNDAPKYCAVIESTLLKNDEVIFTGEIPARCIGEYRNDLNFYTNGRSVCLTELKGYQEISGEPVLQPRRPNSRLDKVRHMFQKIT
>NZ_CP041667.1|WP_070087584.1|2308337_2309204_-|AraC-family-transcriptional-regulator
MLKKLNDAMDYIEAHLEDEFLLEKISEHINVSDYHFRKIFFALTNMTLNEYVKNRRLSEANKELLQGAQVTDVAYQYGYQSVDGFTRAFKKWSGILPSQVAKLKQCKSCQKLQFVVTMKGGTLMEYKIVEKPAFTFAGVSKRVPLQYEGVNNAILELAQSITQEQKEEMHRLQNIEPYETVNVSYESDTNFLEEAGELTHLIGVLTTKNDISSNLDTFPVKAHTWAVFPNEGIFPFTLQDTMARIYSEWFMTADYELAEPFSFSFTKMDDKKPNYAYSEIWIPVTKKE
>NZ_CP041667.1|WP_070087583.1|2306939_2307758_-|RNA-methyltransferase
MKVVSILNKNNDYQRFEVLKHNRNKRYKYNQFIVEGVRSLNEAVKNNWKIISFIYDKNNLSGWAKHMIETVKTEVNYTLTAQLLKELSGKEETSELLAIIEMREDRLENVALSSNPFIVLFDRPSNKGNLGTMIRSCDALGVDMLIITGHAVDLYEPDVIVSAMGSFFNLPVIRIIHNEDLYKFVESLRIKYPGFKIIGTTAHHEKPIYHEDLKTPVMLMMGNETMGLNKAFKEYCDVLCTIPMAEDSYASSFNVSCAASIMMYEIVRQRMN
>NZ_CP041667.1|WP_083262785.1|2306657_2306888_+|hypothetical-protein
MHFVGFIFGHGNSPSLNNSAGRQHSLLSPLDCLSAKAGGAVNGGAYAPFILTVDWLGWLCHLSVIAYSFFICRLLR
>NZ_CP041667.1|WP_070087582.1|2306264_2306687_-|sigma-70-family-RNA-polymerase-sigma-factor
MTEDEAYKVHIQYTFNAFCKIVIRHAAIDIILKLRRRWEREVSLDYLMNEKFVQLAEPEQLEEYLFTACGQTAVLYHAELAAALALLPEQTQEEIFRYYFLRQPQRVIGVHIGRTRSTAGRHIQLALQRLRRLMEGKDHE
>NZ_CP041667.1|WP_143930304.1|2317629_2318916_-|MFS-transporter
MKNRIYELKDFYILWSTQGLSQLGSTMTNFALTLWLYQATGSALQTALLSVCSYTPYVLMSIFAGAFSDKWDKKKTMLVCDTLAACCTLLVFGLLKAGLLCPWHLYLLNGINGLMNTVQSPASDVAVTLITPRKYYQKTSGLRSFSNSLITILHPMLATSFYAFGGMDFVIIVDLCTFFAAFLALLFGVKIPEADRKCEEKESLLESVKAGLYYLNENRLVLVLILFLAGVNLVASAFDAVLPAFILPRENGGEKILGIVTSFGGIAMLAGSLLVSVLPAPKDRIRLIVVTMMISLTTDNFLMSLTRTPFTWCVGQILGYTPVPFMNASLDVIVRSTIPMEMQGRVYACRNTLQFFTIPIGFLLGGWMVDQICEPFMARAGADSIAAMLFGQGKGSGAAMMIFLLGLTGMTVCLVFRKVLKKYRYQER
>NZ_CP041667.1|WP_143930305.1|2320026_2321442_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MKKGQIYEGIIETVEFPNKGKIYLPGEEKPVIVKNGIPGQKVRFSVNKIRGGRAEGRILEILESSPKEIPSPCPHFGLCGGCTYQTLPYEDQLQMKETQLKAMMDEAADTEYLWEGIKESPRRQEYRNKMEFSFGDEYKDGPLALGMHKRGSFHDIVNVPDCQIVDEDYRKILSCTLEYARSTGLPYYHRMRHEGFFRHLLVRKAVRTGEILIDQVTTTQSCSSKSAANGTDGFDGQSWVEALLALDLEGKIAGILHTRNDSVADVVKDEGTEILYGQDYFYEELLGLKFKITPFSFFQTNSLGAEVLYETVREYVGETKDKVIFDLYSGTGTIAQMLAPVAAKVVGVEIVEEAVEAAKENAGLNGLENCDFWAGDVLKVIDELGEKPDLIVLDPPRDGVNPKALDKIIRFGVERIVYIACKPTSLARDLEMLQGRGYQVERIAGVDLFPGTYHVETVALLSHKNLTAQSA
>NZ_CP041667.1|WP_143930306.1|2321555_2322479_-|NYN-domain-containing-protein
MDGQYYALLIDADNVSAKYIKPILTELSKYGNITYKRIYGDWTSTQHSSWKDELLKNSIMPIQQFSYTQGKNATDSAMIIDAMDILYTNAIDGFCIVSSDSDFTRLVSRLRESGKTVIGMGENKTPEPFRKACDKFTILENLLNEQEPGTEQESHDALSKEKIEDAVIKMIIENQDSNRITGLGEVGSRLVSLYPDFDVRSYGYNMLSKFLEEFSRIQMVKKGNIVSVILKEDEGRKADIDRYVRRMVKDAGRSGIELSTLGNRVYEKYKDFKINDYGYSQFNQYVKSLPNIRVEKDGTILNAVYRE
>NZ_CP041667.1|WP_143930307.1|2322613_2322856_-|DUF4366-domain-containing-protein
MSKVEDIIAATKLSELVNKKDEDKQSKTVLWILAIVGAVAAIAAIAYAVYCFFTPDYLEDFEEDFEDDFDDDFFNDEDQV
>NZ_CP041667.1|WP_143930308.1|2322943_2325184_-|DNA-helicase-PcrA
MSIYDTLNDRQKEAVLHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDRLVGFGSESIWVSTFHSMCVRILRRHIELLGYDTNFTIYDTDDQKTLMKDVCRLLNVDTKIFRERTLLSSISKAKNELITPEEFQLQAGGDFGLKKVAEIYTEYEKQMRANNALDFDDLLLKTVQLFQTHKEVLDYYQERFRYIMVDEYQDTNTVQFELVRLLASKYRNLCVVGDDDQSIYKFRGANIKNILNFEQFFQDAAVIKLEQNYRSTETILNAANGVISHNKGRKEKTLWTENGKGEAIQFRQFDTAYDEAEYIVDDIRRQVEQGEGAYQDYAILYRTNAQSRMFEEKFVTANIPYKIVGGVNFYARREIKDLLAYLKTIDNGKDDLAVRRIINVPKRGIGLTSINRVQEYAARREIGFYDALLGADLIPDIGRGLSKLESFAALMERFKRDAAEMTISDLLQEILDETGYIESLQAEGEEEAEARIENIDELRNKIAAYEEACQEQDEPASLSGFLEEVALVADIDDLDENSDYVVLMTLHSAKGLEFPHVYLAGMEDGLFPSYMTITSDDPEEVEEERRLCYVGITRAQEKLTLTCARRRMVRGETQYNKMSRFLKEIPLELLSTGAVFKREETEEKEKPRFQSAYQQARQAFHTKAFAGVKQGKQFGSPAGHLDYQEGDRVRHVKFGDGTVTAIVEGGRDYEVTVDFDGPGTKKMFAAFAKLVKI
>NZ_CP041667.1|WP_143930309.1|2325186_2325579_-|DUF3783-domain-containing-protein
MKSVVLCYNLKGTAKGKKIGMIFGFLGFKVRAVDKEQYLWPIGALTGMEEPELEPEVYDGDGFPEEMLVIQAETEDMLDKAIFLMQKDRVQVGLKAVVTASNQKWTSLALHDEIKKEHEIMKRREAERKG
>NZ_CP041667.1|WP_143930310.1|2325652_2327557_-|ATP-binding-cassette-domain-containing-protein
MPGPMKRAPRGVKSQVEHPGRLFARVMKYVFKDYGIHCAAVVVLILVGVLANVQGTMFMRDLIDVYITPFLMSDTPDFAPLAQAILRVAAFYGVGIISTYTYNRLMVTVTQGTLRDMRDDLFSHMQKLPIKYFDTHAHGDIMSVYTNDIDTLRQMISQSMPQLLNSAITIVSVLVSMVILSIPLTIVTLLMVGIMVFSSKIMAGKSGRYFLEQQVNLGTVNGYIEEMMSGQKVVKVFCHEEENIERFRELNDKLYVSADKANTYANLLGPINAQLGNVSYVVCAIAGGVLALGNVGGFTLGGLASFLTFNRNFSMPINQISMQLNAVIMAMAGAERIFRLLDEEEEKDEGYVTLVNIKEENGVIEETKERTGRWAWKHIHRADGSVDYVEVKGDVVFNGVDFGYTDEKIVLHDIKLYATPGQKIAFVGSTGAGKTTITNLINRFYDIQDGKIRYDGININKIKKADLRRSLGIVLQDTHLFTGTVKDNIRFGKLDASDEEIVAAAKLANADGFIRRLPNGYDTMITGDGANLSQGQRQLLAIARAAVADPPVLILDEATSSIDTRTERIVQEGMDKLMHGRTTFVIAHRLSTVRNSDCIMVLEQGRIIERGTHDQLIEEKGRYYQLYTGNLALQ
>NZ_CP041667.1|WP_143930311.1|2327560_2329309_-|ATP-binding-cassette-domain-containing-protein
MIRVLLREVKQYKGASIATPLFMVLEVLMEMAIPFLMASIIDQGVNEGDIGHIYRVGAVMIAAALIGLLAGVGGGRFGAKASAGLARNLREAMFNNIQTFSFSNIDKYSTAGLVTRLTTDVTNVQNAYQMTLRMFTRAPASLVCAMLMAFAINARLAVIYLIAVIVLGILLFLIMSHATRYFQQAFPKYDDLNASVQENVSAIRVVKAYVREEQETSKFKRASGNLCRIFTKAECNLVYNAPLMQITVYSCILLISWLGAKMIVSSQLTEGELMSLLAYCMNILMSLMMLSMVFVMVSMSMASVRRISEVLRETSDLQNPERPVMDVPDGSIEFRHVDFAYRRDSEEPVLKDIDLTIRSGETIGIIGGTGSAKTSLVNLVSRLYDVTKGEVLVGGRNVKEYDMEVLRNQVSVVLQNNVLFSGSILENLRWGNKEASEEECRQACRLACADEFIQRMPAGYQTHIEQGGTNVSGGQKQRLCIARALLKKPKILILDDSTSAVDTATDAKIRKSFREAIPDTTKLIIAQRISSVQDADRIIVMEDGCVNGFGTHEELLETNEIYREVYESQTQGGGDFDEKAGE
>NZ_CP041667.1|WP_143930312.1|2329505_2330117_+|DUF1836-domain-containing-protein
MTINTKDMLNSILSSIARIDYVKPESIPNIDLYMDQVTTFMNEQLRSTKRYEDDKILTKTMINNYAKNNLLPPPVKKKYSREHVLVMIFIYYFKNILSIKDIEAMLTPITENYFNNESFNMTEIYEEICQLEKSRIDGLAKDVARAYQSAEETFGDRPQDEQEYLRFFSFICNLSFDVYVKKLLIEKLIDELPDPESSEKKKK
>NZ_CP041667.1|WP_143930313.1|2330126_2330855_-|response-regulator
MEIRDRVLIVEDDKNIRSFLQTVLEANNYEVLLAQNGLSAYSLITSQCPDIVILDLGLPDMDGIKILENVREWSQMPIIVVSARTHEKDKVSALDKGADDYITKPFGTSELLARVRTAIRHARGSGTGQNGGQSMSFLSGRLVIDHDKHRVFVDGTDAGLTQNEFKLVSLLGKYAGKVLTYDYMMKEIWGPNMKNDNRILRVNMANIRRKIEKNPAQPEFIFTEIGVGYRFVEADVQAKEKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041667_5	5.3\|2242801\|32\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2242801-2242832	32	NZ_CP041667.1	2134404-2134435	1	0.969
NZ_CP041667_5	5.9\|2243201\|35\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2243201-2243235	35	NZ_CP041667.1	2101206-2101240	2	0.943

1. spacer 5.3|2242801|32|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to position: 2134404-2134435, mismatch: 1, identity: 0.969

catatagtatataccgcctataacaagtacct	CRISPR spacer
catatagtatataccgcctataacaagtatct	Protospacer
*****************************.**

2. spacer 5.9|2243201|35|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to position: 2101206-2101240, mismatch: 2, identity: 0.943

tggagggggccggcgggagcacagacggaaaggca	CRISPR spacer
tggagggggccggcgggagcacaggcagaaaggca	Protospacer
************************.*.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041667_6	6.10\|2317431\|34\|NZ_CP041667\|PILER-CR	2317431-2317464	34	MK448877	Streptococcus phage Javan220, complete genome	39467-39500	7	0.794
NZ_CP041667_5	5.6\|2243000\|33\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2243000-2243032	33	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	252803-252835	8	0.758
NZ_CP041667_5	5.5\|2242933\|34\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2242933-2242966	34	MN693995	Marine virus AFVG_250M873, complete genome	42747-42780	9	0.735
NZ_CP041667_5	5.5\|2242933\|34\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2242933-2242966	34	KX349293	Cyanophage S-RIM44 isolate Np_20_0711, complete genome	110204-110237	10	0.706
NZ_CP041667_5	5.5\|2242933\|34\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2242933-2242966	34	KX349296	Cyanophage S-RIM44 isolate Sn_13_0910, complete genome	110246-110279	10	0.706
NZ_CP041667_5	5.5\|2242933\|34\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2242933-2242966	34	NC_047734	Cyanophage S-RIM44 isolate Np_42_0711, complete genome	110201-110234	10	0.706
NZ_CP041667_5	5.5\|2242933\|34\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2242933-2242966	34	KX349291	Cyanophage S-RIM44 isolate ES_42_0910, complete genome	110246-110279	10	0.706
NZ_CP041667_5	5.6\|2243000\|33\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2243000-2243032	33	NZ_CP045289	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence	10672-10704	10	0.697
NZ_CP041667_5	5.7\|2243066\|34\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2243066-2243099	34	MK448815	Streptococcus phage Javan585, complete genome	229-262	10	0.706

1. spacer 6.10|2317431|34|NZ_CP041667|PILER-CR matches to MK448877 (Streptococcus phage Javan220, complete genome) position: , mismatch: 7, identity: 0.794

atagggttgattcctaacttttcacgatacttgt	CRISPR spacer
aaaactttgattcctaacttttcaaaatacttct	Protospacer
* *.  ****************** .****** *

2. spacer 5.6|2243000|33|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 8, identity: 0.758

agttgtggaaagaaaagggaagaacagttccct---	CRISPR spacer
agttgtggaaagaaactggaagaa---tctactagc	Protospacer
***************  *******   *.. **

3. spacer 5.5|2242933|34|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to MN693995 (Marine virus AFVG_250M873, complete genome) position: , mismatch: 9, identity: 0.735

actataaaaatactagcgcaagtatattttttct	CRISPR spacer
gtaagaaaaatactagcgccagtatctttatgtt	Protospacer
.. * ************** ***** *** * .*

4. spacer 5.5|2242933|34|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to KX349293 (Cyanophage S-RIM44 isolate Np_20_0711, complete genome) position: , mismatch: 10, identity: 0.706

actataaaaatactagcgcaagtatattttttct	CRISPR spacer
aggcagcaaataatagcggaagtatattttttga	Protospacer
*    . ***** ***** *************

5. spacer 5.5|2242933|34|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to KX349296 (Cyanophage S-RIM44 isolate Sn_13_0910, complete genome) position: , mismatch: 10, identity: 0.706

actataaaaatactagcgcaagtatattttttct	CRISPR spacer
aggcagcaaataatagcggaagtatattttttga	Protospacer
*    . ***** ***** *************

6. spacer 5.5|2242933|34|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to NC_047734 (Cyanophage S-RIM44 isolate Np_42_0711, complete genome) position: , mismatch: 10, identity: 0.706

actataaaaatactagcgcaagtatattttttct	CRISPR spacer
aggcagcaaataatagcggaagtatattttttga	Protospacer
*    . ***** ***** *************

7. spacer 5.5|2242933|34|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to KX349291 (Cyanophage S-RIM44 isolate ES_42_0910, complete genome) position: , mismatch: 10, identity: 0.706

actataaaaatactagcgcaagtatattttttct	CRISPR spacer
aggcagcaaataatagcggaagtatattttttga	Protospacer
*    . ***** ***** *************

8. spacer 5.6|2243000|33|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 10, identity: 0.697

agttgtggaaagaaaagggaagaacagttccct	CRISPR spacer
gcttgcggaaagaaaagggaagaaaagaaaagg	Protospacer
. ***.****************** **

9. spacer 5.7|2243066|34|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to MK448815 (Streptococcus phage Javan585, complete genome) position: , mismatch: 10, identity: 0.706

ggggctcactaccccaaaacagattcgattttta	CRISPR spacer
agaattagataccccaaaacatattctatttttg	Protospacer
.*...* . ************ **** ******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

84111 : 104032

Streptococcus_phage(93.75%)

integrase

attL 72541:72556|attR 116186:116201

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
72541:72556	attL	NA	NA	NA	NA
WP_087303309.1\|84111_85308_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	4.0e-155	67.0
WP_021421702.1\|85387_85591_-	hypothetical protein	A0A1S5SF07	Streptococcus_phage	2.5e-25	80.6
WP_116632638.1\|85696_85906_+	hypothetical protein	NA	NA	NA	NA
WP_021421703.1\|85966_86215_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021421704.1\|86218_86641_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	1.9e-19	37.9
WP_032509185.1\|87167_87530_+	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	3.9e-21	46.8
WP_074141164.1\|87599_87824_-	hypothetical protein	NA	NA	NA	NA
WP_074141165.1\|87843_88224_-	hypothetical protein	NA	NA	NA	NA
WP_074141166.1\|88226_88961_-	ABC transporter permease	NA	NA	NA	NA
WP_074141167.1\|88957_89689_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.5e-27	33.3
WP_087173369.1\|89685_89949_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_074141169.1\|90074_90314_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_087303311.1\|90392_91286_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	2.4e-80	53.5
WP_075877379.1\|91307_92315_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	2.9e-130	75.0
WP_087390348.1\|92311_94453_-	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	3.5e-178	70.7
WP_087303493.1\|94452_96900_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	75.9
WP_087303491.1\|96886_97276_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	1.4e-48	73.8
WP_143928565.1\|97384_97888_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	7.0e-53	57.8
WP_143928566.1\|97905_98403_-	antirestriction protein ArdA	NA	NA	NA	NA
WP_060815474.1\|98377_98614_-	hypothetical protein	NA	NA	NA	NA
WP_087303305.1\|98712_99150_-	hypothetical protein	NA	NA	NA	NA
WP_010817890.1\|99361_99583_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	6.2e-30	91.8
WP_010817889.1\|99579_99720_-	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_087303303.1\|99735_100926_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	4.0e-147	62.8
WP_143928567.1\|101126_102521_-	ATP-binding protein	A0A1S5SFB5	Streptococcus_phage	6.1e-171	63.6
WP_074143640.1\|102583_103189_-	VanZ family protein	NA	NA	NA	NA
WP_074143641.1\|103302_103689_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	7.6e-39	68.6
WP_076779936.1\|103705_104032_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	3.3e-35	65.7
116186:116201	attR	NA	NA	NA	NA

DBSCAN-SWA_2

571879 : 594244

Clostridium_phage(30.77%)

integrase,capsid,terminase,portal

attL 578454:578467|attR 590491:590504

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143928908.1\|571879_572992_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_143928909.1\|573216_574038_-	PASTA domain-containing protein	NA	NA	NA	NA
WP_143931175.1\|574094_574679_-	S24 family peptidase	A0A1S5S8T5	Streptococcus_phage	1.5e-14	31.2
WP_143928910.1\|575191_575425_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143928911.1\|575421_575604_+	hypothetical protein	NA	NA	NA	NA
WP_143928912.1\|575593_575908_-	hypothetical protein	NA	NA	NA	NA
WP_143931176.1\|576013_576301_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_143928913.1\|576263_576818_-	hypothetical protein	X5JB43	Clostridium_phage	1.7e-15	36.6
WP_143928914.1\|576881_577112_+	hypothetical protein	NA	NA	NA	NA
WP_143928915.1\|577111_577318_+	hypothetical protein	NA	NA	NA	NA
WP_143928916.1\|577330_577522_+	hypothetical protein	NA	NA	NA	NA
WP_143928917.1\|577499_577715_+	hypothetical protein	NA	NA	NA	NA
WP_143928918.1\|578116_578773_+	YqaJ viral recombinase family protein	A0A139ZPJ9	Marinitoga_camini_virus	7.1e-21	35.3
578454:578467	attL	NA	NA	NA	NA
WP_143928919.1\|578726_579641_+	DUF1351 domain-containing protein	H7BV61	unidentified_phage	2.1e-18	34.0
WP_143928920.1\|579645_580590_+	recombinase	D2IYT9	Enterococcus_phage	2.3e-36	35.4
WP_143928921.1\|580699_581140_+	RusA family crossover junction endodeoxyribonuclease	J9QE82	Clostridium_phage	7.4e-14	34.7
WP_143928922.1\|581149_581992_+	DUF4373 domain-containing protein	NA	NA	NA	NA
WP_143928923.1\|582215_584732_+	DNA methylase N-4	A0A1W6JTS4	Mycobacterium_phage	3.7e-259	53.5
WP_143928924.1\|584875_585937_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J4W0	uncultured_Caudovirales_phage	2.2e-32	49.7
WP_143928925.1\|585971_586328_+	hypothetical protein	A0A2K9V3U7	Faecalibacterium_phage	1.3e-08	35.5
WP_143928926.1\|586420_587137_+	phosphoadenosine phosphosulfate reductase	A0A0E3M3Z6	Verrucomicrobia_phage	9.1e-54	48.3
WP_143928927.1\|587512_587794_+	hypothetical protein	NA	NA	NA	NA
WP_143928928.1\|587777_588230_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_143928929.1\|588392_588638_+	hypothetical protein	NA	NA	NA	NA
WP_143928930.1\|588634_589069_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_143928931.1\|589217_589955_+\|terminase	terminase	A0A1L2JY44	Aeribacillus_phage	1.7e-42	51.8
WP_143928932.1\|589923_591294_+\|terminase	PBSX family phage terminase large subunit	A0A0A8WJB3	Clostridium_phage	1.1e-140	55.4
590491:590504	attR	NA	NA	NA	NA
WP_143928933.1\|591303_592671_+\|portal	phage portal protein	A0A0A8WE96	Clostridium_phage	5.1e-98	41.3
WP_143928934.1\|592681_594244_+\|capsid	minor capsid protein	NA	NA	NA	NA

DBSCAN-SWA_3

926735 : 936637

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143929184.1\|926735_929459_+	GTP-binding protein	E4ZFJ7	Streptococcus_phage	5.3e-70	30.3
WP_143929185.1\|929525_929969_+	hypothetical protein	NA	NA	NA	NA
WP_143929186.1\|930033_931155_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_143929187.1\|931322_932003_+	response regulator	W8CYM9	Bacillus_phage	1.6e-31	35.3
WP_143929188.1\|932015_933395_+	HAMP domain-containing protein	A0A1B0VMK3	Pseudomonas_phage	9.1e-10	24.3
WP_143929189.1\|933435_933954_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.3e-25	46.6
WP_143929190.1\|933970_934903_+	EamA family transporter	NA	NA	NA	NA
WP_143931189.1\|934934_935798_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	1.5e-18	31.7
WP_143929191.1\|935782_936637_+	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	7.6e-15	30.7

DBSCAN-SWA_4

1453613 : 1464153

uncultured_Mediterranean_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143929595.1\|1453613_1455872_+	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	5.6e-25	33.9
WP_143929596.1\|1455982_1457743_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.6e-78	32.3
WP_143929597.1\|1457838_1458363_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.2e-24	37.7
WP_143929598.1\|1458441_1460790_+	RelA/SpoT family protein	A0A2I2L310	Orpheovirus	1.2e-09	38.1
WP_143931223.1\|1460812_1461433_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	3.0e-29	36.0
WP_143929599.1\|1461442_1462897_+	coproporphyrinogen dehydrogenase HemZ	NA	NA	NA	NA
WP_143929600.1\|1462881_1464153_+\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	9.8e-35	28.7

DBSCAN-SWA_5

1615698 : 1632890

Streptococcus_phage(75.0%)

integrase,transposase

attL 1610537:1610550|attR 1632046:1632059

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1610537:1610550	attL	NA	NA	NA	NA
WP_143929731.1\|1615698_1617222_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	1.9e-32	32.9
WP_070504122.1\|1617319_1617532_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143929732.1\|1617878_1618115_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_117579490.1\|1618120_1618537_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	6.5e-20	37.2
WP_143929733.1\|1619081_1619441_+	helix-turn-helix domain-containing protein	A0A2K5B2A6	Erysipelothrix_phage	1.4e-34	66.1
WP_143929734.1\|1620387_1621296_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.0e-86	54.0
WP_143929735.1\|1621317_1622319_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	7.5e-131	67.2
WP_143929736.1\|1622315_1624472_-	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	3.7e-167	68.9
WP_143929737.1\|1624468_1626928_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	74.0
WP_143929738.1\|1626914_1627304_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	1.5e-50	74.6
WP_143931233.1\|1627408_1627897_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	5.0e-56	61.1
WP_143929739.1\|1627918_1628422_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.3e-22	38.6
WP_143931234.1\|1628432_1628621_-	hypothetical protein	NA	NA	NA	NA
WP_143928506.1\|1628736_1629933_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	2.1e-39	36.9
WP_143929740.1\|1630064_1630547_-	hypothetical protein	NA	NA	NA	NA
WP_143929741.1\|1630587_1631064_-	hypothetical protein	NA	NA	NA	NA
WP_143929742.1\|1631173_1631740_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_143931235.1\|1631717_1632593_-	nucleotidyltransferase	NA	NA	NA	NA
1632046:1632059	attR	NA	NA	NA	NA
WP_010817890.1\|1632668_1632890_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	6.2e-30	91.8

DBSCAN-SWA_6

2078196 : 2119060

Lactobacillus_phage(21.05%)

holin,portal,protease,head,terminase,capsid,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143930123.1\|2078196_2079330_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.0e-88	44.3
WP_143930124.1\|2079349_2081185_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_143930125.1\|2081379_2082492_+	chorismate synthase	A0A291AU41	Pandoravirus	7.7e-76	43.8
WP_143930126.1\|2082530_2084201_-	nucleoside kinase	NA	NA	NA	NA
WP_143930127.1\|2084215_2084995_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_143930128.1\|2085030_2085750_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_143930129.1\|2085763_2086879_-	RNA polymerase sigma factor RpoD	M4SMP8	Cyanophage	3.2e-37	36.5
WP_143930130.1\|2086918_2088688_-	DNA primase	A0A1S5RH70	Helicobacter_phage	7.5e-41	31.4
WP_143930131.1\|2088754_2089762_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_143930132.1\|2089775_2091284_-	polyphosphate:AMP phosphotransferase	NA	NA	NA	NA
WP_143930133.1\|2091465_2092275_-	ATP-binding cassette domain-containing protein	F2Y1V6	Organic_Lake_phycodnavirus	6.7e-13	28.6
WP_143930134.1\|2092294_2093143_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.5e-15	27.1
WP_143930135.1\|2093124_2093892_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_143930136.1\|2093922_2094549_-	hypothetical protein	NA	NA	NA	NA
WP_143930137.1\|2094594_2095554_-	nucleoside hydrolase	NA	NA	NA	NA
WP_143930138.1\|2095570_2096479_-	ribokinase	NA	NA	NA	NA
WP_143930139.1\|2096515_2098417_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_143930140.1\|2099180_2099363_-	antitoxin	NA	NA	NA	NA
WP_143930141.1\|2099356_2099788_+	hypothetical protein	NA	NA	NA	NA
WP_143930142.1\|2099830_2100127_+	hypothetical protein	NA	NA	NA	NA
WP_143930143.1\|2100241_2100424_+	hypothetical protein	NA	NA	NA	NA
WP_143930144.1\|2100425_2100611_+	hypothetical protein	NA	NA	NA	NA
WP_143930145.1\|2100611_2100950_+	hypothetical protein	NA	NA	NA	NA
WP_143931262.1\|2100965_2101283_-	SH3 domain-containing protein	H7BVE5	unidentified_phage	1.8e-17	57.0
WP_143930146.1\|2102081_2102315_-\|holin	phage holin	J7KDR1	Streptococcus_phage	3.9e-22	72.6
WP_143930147.1\|2102330_2102639_-	hypothetical protein	A0A2K9V480	Faecalibacterium_phage	7.7e-18	51.5
WP_143930148.1\|2102643_2103048_-	hypothetical protein	NA	NA	NA	NA
WP_143930149.1\|2102980_2103400_-	hypothetical protein	NA	NA	NA	NA
WP_143930150.1\|2103756_2104461_-	hypothetical protein	NA	NA	NA	NA
WP_143930151.1\|2104508_2105567_-	hypothetical protein	NA	NA	NA	NA
WP_143930152.1\|2105500_2106202_-	hypothetical protein	NA	NA	NA	NA
WP_143930153.1\|2106321_2108577_-	hypothetical protein	NA	NA	NA	NA
WP_143930154.1\|2108888_2109308_-	hypothetical protein	NA	NA	NA	NA
WP_143931263.1\|2109307_2109850_-\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	1.6e-39	49.7
WP_143930155.1\|2109884_2110196_-	hypothetical protein	A0A2H4J234	uncultured_Caudovirales_phage	7.7e-18	48.0
WP_143930156.1\|2110192_2110597_-	HK97 gp10 family phage protein	A0A0U4II15	Exiguobacterium_phage	4.2e-16	39.5
WP_143930157.1\|2110580_2110922_-\|head	phage head closure protein	NA	NA	NA	NA
WP_143930158.1\|2110921_2111227_-\|head,tail	phage gp6-like head-tail connector protein	A0A2P1CC98	Lactobacillus_phage	2.6e-10	40.9
WP_143930159.1\|2111171_2111378_-	hypothetical protein	NA	NA	NA	NA
WP_143930160.1\|2111543_2112749_-\|capsid	phage major capsid protein	A0A075KL38	Lactobacillus_phage	5.7e-101	52.2
WP_143930161.1\|2112769_2113378_-\|head,protease	HK97 family phage prohead protease	A0A1C8EA63	Bacillus_phage	3.4e-25	38.2
WP_143931264.1\|2113374_2114466_-\|portal	phage portal protein	A0A075KK59	Lactobacillus_phage	3.3e-95	50.0
WP_143930162.1\|2114593_2114827_-	hypothetical protein	NA	NA	NA	NA
WP_143930163.1\|2114839_2116531_-\|terminase	terminase	A0A075KQG7	Lactobacillus_phage	1.3e-146	49.4
WP_143931265.1\|2116523_2117060_-	hypothetical protein	NA	NA	NA	NA
WP_143930164.1\|2117991_2118645_-	hypothetical protein	O48505	Lactococcus_phage	5.1e-27	54.2
WP_143930165.1\|2118745_2119060_+	helix-turn-helix domain-containing protein	Q24LF2	Clostridium_phage	2.4e-06	44.3

DBSCAN-SWA_7

2839226 : 2847563

Streptococcus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001096887.1\|2839226_2840021_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_000627290.1\|2840113_2840656_-	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_143930740.1\|2840652_2841561_-	aminoglycoside 6-adenylyltransferase	E4ZFP8	Streptococcus_phage	1.7e-161	89.7
WP_000662263.1\|2841593_2842328_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_000228166.1\|2842308_2843178_-	hypothetical protein	A0A1X9I6C9	Streptococcus_phage	4.3e-159	95.8
WP_033126275.1\|2843353_2843578_-	helix-turn-helix domain-containing protein	A0A2K5B261	Erysipelothrix_phage	4.1e-13	47.1
WP_025579719.1\|2843714_2843873_-	conjugal transfer protein	NA	NA	NA	NA
WP_143929064.1\|2845655_2847563_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.8e-32	32.4

Anti-CRISPR protein detection

Acr_ID: NZ_CP041667.1|WP_143930140.1|2099180_2099363_-|antitoxin

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP041667.1|WP_143930140.1|2099180_2099363_-|antitoxin

2099180_2099363_-

60 aa aa

2078196-2119060

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP041667_5	TypeI	5.9\|2243201\|35\|NZ_CP041667\|CRISPRCasFinder,CRT,PILER-CR	2243201-2243235	35	2101240-2101206	2

1. spacer 5.9|2243201|35|NZ_CP041667|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041667 position: 2101240-2101206, mismatch: 2

tggagggggccggcgggagcacagacggaaaggca	CRISPR spacer
tggagggggccggcgggagcacaggcagaaaggca	Protospacer
************************.*.********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041667

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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