CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041687	Chryseobacterium sp. SNU WT5 chromosome, complete genome	2 crisprs	cas3,RT,csa3,DEDDh,WYL	0	0	3	0
NZ_CP041688	Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence	0 crisprs	RT,PD-DExK	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041687_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041687_1

907281-907367

Orphan

Consensus_repeat	Method
AAATCCTTTGAATGATATTTTAGGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041687_1

>merge|NZ_CP041687|1|907281-907367|CRISPRCasFinder
AAATCCTTTGAATGATATTTTAGGAAGTGTGCTTGGCGGAGGTCAACAACAATCTTCAGGAAATCCTTTGAATGATATTTTAGGAAG

>NZ_CP041687|1|1|907281-907367|CRISPRCasFinder
AAATCCTTTGAATGATATTTTAGGAAG	TGTGCTTGGCGGAGGTCAACAACAATCTTCAGG
AAATCCTTTGAATGATATTTTAGGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041687.1\|WP_143851910.1\|900303_902316_-\|succinate-dehydrogenase-(quinone)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236054
NZ_CP041687.1\|WP_143851923.1\|911054_911789_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180838
NZ_CP041687.1\|WP_143851934.1\|917385_918672_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|99867
NZ_CP041687.1\|WP_143851905.1\|895437_895917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041687.1\|WP_143851936.1\|918752_920045_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP041687.1\|WP_143851931.1\|914323_916816_-\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	unknown	unknown	gnl\|CDD\|236931
NZ_CP041687.1\|WP_143851911.1\|902373_903045_-\|succinate-dehydrogenase-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|239578
NZ_CP041687.1\|WP_143851925.1\|911785_912559_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP041687.1\|WP_143851927.1\|912558_913248_-\|DUF4918-family-protein	unknown	unknown	gnl\|CDD\|379812
NZ_CP041687.1\|WP_143851909.1\|899514_900282_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181038
NZ_CP041687.1\|WP_143851929.1\|913487_913952_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP041687.1\|WP_143851907.1\|897439_897745_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041687.1\|WP_143851916.1\|906203_906710_+\|DUF2480-family-protein	unknown	unknown	gnl\|CDD\|313799
NZ_CP041687.1\|WP_143851908.1\|897820_899335_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239264
NZ_CP041687.1\|WP_143851914.1\|904993_906100_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP041687.1\|WP_143851932.1\|916812_917103_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041687.1\|WP_143851922.1\|910064_911039_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP041687.1\|WP_143851906.1\|895930_897340_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP041687.1\|WP_143851920.1\|908185_909940_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP041687.1\|WP_143851912.1\|903169_904942_-\|DUF4131-domain-containing-protein	unknown	unknown	gnl\|CDD\|377126

Protein	Function_ID	Function_description	E-value
NZ_CP041687.1\|WP_143851910.1\|900303_902316_-\|succinate-dehydrogenase-(quinone)-flavoprotein-subunit	gnl\|CDD\|236054	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
NZ_CP041687.1\|WP_143851923.1\|911054_911789_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180838	PRK07102, PRK07102, SDR family oxidoreductase.	2.44108e-54
NZ_CP041687.1\|WP_143851934.1\|917385_918672_-\|citrate-synthase	gnl\|CDD\|99867	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs including EcCS are strongly and specifically inhibited by NADH through an allosteric mechanism. Included in this group is an NADH-insensitive type II Acetobacter acetii CS which has retained many of the residues used by EcCS for NADH binding.	0
NZ_CP041687.1\|WP_143851929.1\|913487_913952_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	5.61468e-23
NZ_CP041687.1\|WP_143851931.1\|914323_916816_-\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	gnl\|CDD\|236931	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional.	0
NZ_CP041687.1\|WP_143851911.1\|902373_903045_-\|succinate-dehydrogenase-cytochrome-b-subunit	gnl\|CDD\|239578	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes. Proteins in this subfamily from G. metallireducens and G. sulfurreducens are bifunctional enzymes with SQR and QFR activities.	2.4906e-60
NZ_CP041687.1\|WP_143851925.1\|911785_912559_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	3.96791e-31
NZ_CP041687.1\|WP_143851927.1\|912558_913248_-\|DUF4918-family-protein	gnl\|CDD\|379812	pfam16265, DUF4918, Domain of unknown function (DUF4918). This family consists of uncharacterized proteins around 230 residues in length and is mainly found in various Listeria species. The function of this family is unknown.	6.03977e-125
NZ_CP041687.1\|WP_143851909.1\|899514_900282_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	0
NZ_CP041687.1\|WP_143851936.1\|918752_920045_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP041687.1\|WP_143851916.1\|906203_906710_+\|DUF2480-family-protein	gnl\|CDD\|313799	pfam10652, DUF2480, Protein of unknown function (DUF2480). All the members of this family are uncharacterized proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (EC 5.3.1.9). This could not, however, be confirmed.	2.4946e-89
NZ_CP041687.1\|WP_143851908.1\|897820_899335_-\|redoxin-domain-containing-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.55401e-15
NZ_CP041687.1\|WP_143851914.1\|904993_906100_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	5.35596e-121
NZ_CP041687.1\|WP_143851922.1\|910064_911039_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.82675e-40
NZ_CP041687.1\|WP_143851906.1\|895930_897340_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	9.92737e-123
NZ_CP041687.1\|WP_143851920.1\|908185_909940_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP041687.1\|WP_143851912.1\|903169_904942_-\|DUF4131-domain-containing-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	2.08946e-54

>NZ_CP041687.1|WP_143851916.1|906203_906710_+|DUF2480-family-protein
MSDLEIKNKIAESGLVNFDLAQLLPKGKRIGIDLKDFLFQELILKEKDFREKIAAINPDEYKDSYIYIYNSADAIVPLWAYFLITAKLTETAKKIVFGNREDLEILLMHNAVQTYDFSELMGKRVLVKGCSDQSIPENAYIELVEQLKPIVKSLMFGEACSNVPIFKN
>NZ_CP041687.1|WP_143851914.1|904993_906100_-|lipid-A-disaccharide-synthase
MKYYIIAGEASGDLHASNLMKSLLKKDSQTEFRFWGGDLMKAVAGFEPVKHYKELAFMGFLEVAKNLGTILKNIKFCKEDIQKYQPAVLILVDYPGFNLRIAEFAKSLGIKVIYYISPQLWAWKEGRVEKIRKFVDEMLVILPFEKEFYKKHNVDAHFVGHPLLDAISDLPEMDIDQFKTDNHLNEKEIIALLPGSREQEVTKMLELMLSVRPHFKEYQFVIAGAPSLPKEFYQKYVDENVHFVSNKTYDLLRCSKAALVTSGTATLETALLNIPEVVCYRSSTISYEIGKRVVKNIKYISLVNLIMDQEIVTELIQSELNTKNLVKELTLILQGKRRDEMLANFKQLREKLGGKGASDEAAALIING
>NZ_CP041687.1|WP_143851912.1|903169_904942_-|DUF4131-domain-containing-protein
MQKQPILILFISFIIGIFLQDFFQCSSVAVYIILIFSLIIVTFCFIKNFYFYKVRPVLIGSFVIGLGVFAHFLHSQKPLLPELKGKEMLTFKVFKKLNSNEKNRRYEITAWKGSNQFQSVISIPKQEEALDYLHYYQGEVYINKVEKAYSDFQFDYQKYLQRKGIYYQSYLPNTVKIANRTDISFSENVKQRRLAVLTRIDHSKLNKRTREFVKGIILADRTEMDEGTIRDFRDSGMMHILAISGTHVAIIFGVILMLLNFVFPPKYRSYKIIVALIIIWSFACFIDFGNSVVRSCLMISTYYSFVLLQRKTDLLHSLSLAGLIILVLNTNQIFEVGFQLSFAAVLGIFWFNQPILKKLPKPKNKFQNFILNIFSISLAAQLATLPLVIFYFHQYSFISIIANLIIIPFAEVLIVLSLLMVVLIASSISFSWLNMIFEKLISMTLQLIHFFADVDYAMSRTIPMTLLEVGVLYILLYLIRFPLKSFTLKHCFRVLYLLLLFVSLRCLLNYKASHLNEVLVHQFFKEKVISEKVGERLTFYISENTDQIKIKQYIIDPYLSSRRIKAFSITTIPNNLPEIEIQGEKYILKP
>NZ_CP041687.1|WP_143851911.1|902373_903045_-|succinate-dehydrogenase-cytochrome-b-subunit
MAGLTTSSIGRKYAMALSAMFLLIFLIMHLSVNLLSLGGEDGPFNAASYFMGYNPLIQFVMQPILVIGLIFHFVMGFVLEIKNNNARPIKYGMNTRSGNSTWMSRNMLITGAVILAFLGLHMYDFWFHEMTYKYVPGEGDVNDLTRFWPELHSKFSELWRVIFYVISFVLLGLHLAHGFQSSFQSIGARHPKYTPVIKAIGTWYSILIPAGFILVAVYHYVTQ
>NZ_CP041687.1|WP_143851910.1|900303_902316_-|succinate-dehydrogenase-(quinone)-flavoprotein-subunit
MSKLDSKIPAGPVADKWKNHKDHMNLVSPNNRDKIDIIVVGTGLAGGSAAATLAEQGYNVKAFCYQDSPRRAHSIAAQGGINAAKNYQGDGDSTYRLFYDTIKGGDYRSREANVYRLAEVSASIIDQCVAQGVPFGREYGGQLDNRSFGGVQVKRTFYAKGQTGQQLLLGAYSAMSRQIGKGRIKMHNRHEMLDLVIVDGKARGIIARNLVTGEIERHSAHAVVIASGGYGNVYFLSTNAMGSNVSAAWKIHKKGAYFANPCYVQIHPTCIPVHGTAQSKLTLMSESLRNSGRIWVPKNIEDAVAIREGKLKPENIAHENRDYYLERRYPAFGNLVPRDVASRAAKERCDAGYGIENNDTHEGVYLDFSTEITKKGKEAAIEQNIHNPTEQQIYDLGKSWIEEKYGNLFVMYEKITADNPYVTPMKIYPAVHYTMGGVWVDYNLQSTIPGCFVIGEANFSDHGANRLGASALMQGLADGYFVLPYTIADYLSADIRTGTISTDNAEFDTAEKEIQDKVNFFINNKGTHSVDHFHKKLGHIMWNKVGMGRTPEGLREAIQEIEEVRKDFWANVRVPGEANEMNMELEKAFRVADFLELGQLMAKDALERRESCGGHFRWDHATPEGEAERDDENFKYVAAWEYNGSDINQEVMHKEDLIYENIEVKTRSYK
>NZ_CP041687.1|WP_143851909.1|899514_900282_-|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MSAKKGLSLTLKIWRQKNNKSKGQFETYKISDVSTDSSFLEMLDMLNENLVNEGQEPIAFDHDCREGICGMCSLYINGRPHGPDTGITTCQLHMRMFKDGETIHIEPWRSAAFPIIKDLVVDRSSFDRVMAAGGFISVNTSGNTLDANAILVPKEDADSAMDAAACIGCGACVATCKNGSAMLFVGAKVSQFALLPQGRVEAERRVLNMVKTMDEEGFGNCSNTGACEVECPKGITLEVIARMNREYFVANLDKG
>NZ_CP041687.1|WP_143851908.1|897820_899335_-|redoxin-domain-containing-protein
MSKYLLMLLVAFVTMSCSKKVEVTGNFAGGSPLERIEFIEASGVATLPLVNMGVDAKGNFAGSFDAPKDGMYIMTYGGKQANIYLKGGQKLNISGQAVNFPAKFTVTGDAKKNNDFLQEIQTLIQDYAGKINVQELVSKDEAAFLKGVEKIRADLDKHIDTAAKKTSPDKDVIEFKKDELNASILGLMNQYEMNHGQITQNAAFKVTKNFTDAEAKLKKEEGRLLKNQPIYRNYLLGKLSPEFQKYSEAHKVTATEPSSIEFSKFLDTKKDMSQLAKDYLLAFVISNSDINPSTTPADAAKISKLVQDKIKDVEIKKDLERIQFVISGPKIGEAAPSSKLITIEGKEFKLSDIKGKPAMVMFYASWNPYISESAMPVMKEVANFYKSKMDFVFVNLDDTKDQFTKTSNAMLSGIKGTKVYAENGMNSQIAKDLGIYGFKLPSFMVIDKDGKVASKVFYNLGDEELIKVLDKMTGLKAPEAPQGAVLQNDLVEPPMAMPETPASK
>NZ_CP041687.1|WP_143851907.1|897439_897745_-|hypothetical-protein
MSKDLLIPRNILYLLIIVGFVINFLNLVLKLEDYGISDSVGKSLVFFAMLASFIATAVLIIDVFVNNVDGKYLWTLVFLFSGGFLGYFYLRNRSYYTSKSK
>NZ_CP041687.1|WP_143851906.1|895930_897340_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MRKKNKNIILENILLVSAGSKGVAVGKTDEGKTVLVSGAVPGDVVNARVKKSKSNYYEAEVAEIVIKSPFRVEPRCIHFGVCGGCKWQNLSYEKQLEFKQDEVYNHIKRIAGIEDFETLPILGSEEQYFYRNKMEFSFSDARWLTQYEISSEENFGNRDALGFHIPGMWSKILDLKECFLQEDPSNAMRLAIKNYAVENGLEFFDVRGQAGFLRTVMFRQNSKGEWMVLFQLFRNDKVSREKLFDFLLEKFPEIKTLLFAVNSKQNDSIYDQEVQTYFGDGFLMEEMEGLQFKIGPKSFFQTNYKQALNLYQKTLEFADLKGDEVVYDLYTGTGTIAQYVARKAKQVIGIESVQESINAAKEHAELNGLTNCTFYCGDMKEIFNDEFIAQHPKADVLITDPPRDGMHQKVVGQILRLAPEKIVYVSCNSATQARDLALMKEHYKLVKILPVDMFPQTHHVENIALLVRI
>NZ_CP041687.1|WP_143851905.1|895437_895917_-|hypothetical-protein
MKFLKLLFFSIFLLSLFSCGGDDDICVSGEATPRMKIKFKTQASGKLKTLDSLFIKVDYGNGPIAVVANASKTDSVIIPLRVDDSPFTKIYVGLSKDAVNSVIKINYNTVSEYVSPACGIKKTYKDLNSIVETPAAVLSVEQNQNQITDESKTHLFLLF
>NZ_CP041687.1|WP_143851920.1|908185_909940_+|aspartate--tRNA-ligase
MFRTHTNGELNIQNLDQNVTLSGWVQTIRDKGFMMWIDLRDRYGITQLVFDADRSSKELFEIASKLGREFVIQVEGKVIERQSKNPKIPTGEVEILVEKLTILNQSEIPPFTIEDQTDGGEELRMKYRYLDIRRNPVKDKLIFRHKMAQKVRNYLSEQDFIEVETPVLIKSTPEGARDFVVPSRMNPGQFYALPQSPQTFKQLLMIGGMDRYFQIVKCFRDEDLRADRQPEFTQIDCEMAFVEQEDVLEIFEGMTATLLKDIARKEFGKFPRMTFADAMQKYGNDKPDIRFGMEFVEVNELVKGKDFKIFDDAELVVGINVEGCADYTRKQIDELIDWVKRPQIGANGMIWIKFQNDGVVTSSVNKFYNEEDLKKITEKFGAKAGDLIFLMSGNENKVRTQLSALRMELGNRLGLRNPKEFAPLWVIDFPLLEWDEETNRFHAMHHPFTSPKPEDIHLLETEPGKARANAYDLILNGNEIGGGSVRIFDKDLQAKMFNLLGFTKEDAEAQFGFLMNAFQYGAPPHAGLALGFDRLVAILDGNEVIRDYIAFPKNNSGRDVMIDAPSSIADEQLNELALKVELKD
>NZ_CP041687.1|WP_143851922.1|910064_911039_+|Fic-family-protein
MRWQEYPYYFEGLEKQLERIHEKKRELDKKRPIPTYVLKSIKESLNIEWTYNSNSIEGNTLTLQETKMVIEDGFTIKGKSLREHFEVVNHQEAIEFVESLASKDYVLVEKDILSIHHLVLQKIEKEFSGRYRTSGVRISGANFVPPNALKVDEFVNELVNFVNDSQIDILIKSAVFHHRFVWIHPFFDGNGRTARLLLNLLLMKKGFPPAIILKNDRKKYYDALNQANNQDYSKLLLLILQAVERTLDIYLGNLNNTYDQYQNISDIVREPDVPYGQEYLSLLARQGKIDAFKEGRNWLTTKDAVLNYIENRDRKRVLKTEAEN
>NZ_CP041687.1|WP_143851923.1|911054_911789_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSYNPHKTVLILGANSDVAKQCILQYLEEGHSIIASSRNLTSLESFVEDNNIDSSKIFLNYFDAADFSSHQNFYVELPVKPNIVIYAAGFLVENQEALHDFEAAKQMMEVNYMGAVSILNIIAMDRSNKSLERIIGLSSLSGVRGRKSNFIYGSTKSAFTQYLAGLRQELSSRKIVVNVLVSGYINTKINTGLELNKSLIMEPDYVAKYIVNAGNSFSIVPNFKWKMIYYILKILPESLLSKLP
>NZ_CP041687.1|WP_143851925.1|911785_912559_-|enoyl-CoA-hydratase/isomerase-family-protein
MNNGFVNQELKNNIAEITFGTPKSNSLPGEILEKLAQTILESGKDQNVKAILLKSEGEKAFCAGASFDELLEIEELEKSKIFFGGFAKVLNAMRSCGKLVIVRVQGKTTGGGVGIACAADYCFATKDSAMALTELNLGIGPFVIGPFVERKIGKSAYSAMSIDADFRSADWCEKHDVYHSVSESIEKMDVEINTFMEKLSTRSSEALALIKKVSWEGTEHFEQLMPERILMSASLILEDSAKENIGKIKERLRANNR
>NZ_CP041687.1|WP_143851927.1|912558_913248_-|DUF4918-family-protein
MKKTIGEQVVAFNKKLHYSGELPDGFEVLNPFFDNPETLTVMTEFYQKFYNDHNPRKFIIGINPSRHGAGVTGVPFTDTKRLEMVCGIEMKSAHTHEISSFYLYDVIEQFGGPELFYKEFYINSPFPLAITRRNLRGSVNANYYDDKDLFEDVKPFMIQSLKDHISLGLDTSEVFILGKKNATFIDKINSQEKFFDKMTVLEHPRYIQQYKSKEKQLYIDKYLIALNKA
>NZ_CP041687.1|WP_143851929.1|913487_913952_-|IS200/IS605-family-transposase
MPNTYTQIYIQLVFATKGRAMKIRPEFRDEIEKYITGIFTNKGQKVIAIYLNPDHIHIFFSYKNLKINIPDLVKVVKTESTNFINTKKMVQGKSYWQEGYGAFSYAKSQKEAVTKYILNQKEHHKKRNFKEEYLDLLNKFEIEFKEEYLFEFYD
>NZ_CP041687.1|WP_143851931.1|914323_916816_-|phenylacetic-acid-degradation-bifunctional-protein-PaaZ
MKLKNYINGQWIEGSGNEVPLYNAVNGELVAISDTGGINFEQALEYGRTVGYKNLSSMTFYDRGEMLKKVALYLLERKKKYYDLSYKTGATHSDSWVDIEGGFGTFFTYSGLAKRMLPNTPFWVDGDTQKLGANGTFIGTHILTPSEGVSVQINAYNFPVWGMLEKLSTSLLAGVPAIVKPATPGSYLTNAVFQDMIESGLLPEGAIQLVCGEPGNILDYVQDGDSVLFTGSASTGKKLKSLPSVSSNSVRFNMEADSLNCSILGLDAKPGTPEFDLFIKEVRSEMTTKAGQKCTGIRRIIVPENLVGDVQNALSKALDQTKIGNPLSRETRMGSIVGKKEMAVLQDKIELLKAETELIYDGKHELVDADYESGAFMTPKVFYNDKPFEKNSSHEVEAFGPVSTIMPYKDADEAAALAKRGKGSLVGSIISHDEKFVAETSWKMASSHGRIFVLNRDNAKESTGHGSPLPTLMHGGPGRAGGGEEMGGLNGLHFFLQKTAIQGSPDILTAITKVYQQGATPTYSDKHPFRKYFEEVEIGDSLETAGRTVTEADIVNFGNVSWDHFYAHTDATSLNGTIFDKTVAHGYFILSAAAGLFVSGKKGPVIANYGLENANFFKPVYAGDTITVYLTAKERINKGVKGRNVPSGVVKWLVEVVNQREETVCVATILTLVAKKSPFIKIDYKDFAKRLNNLTEKTVPQWGRMNAQQMLEHLETTMKYSTGELETDFCKTPEEHLEKYQDSLYNFYKMPKDFPAPFLEDGKLPELKYKNLDEAKTHFIESVKKYQIYYRENPEAEHLHFVFGKLNKEMMELFHEKHVTHHFEQFGLID
>NZ_CP041687.1|WP_143851932.1|916812_917103_-|hypothetical-protein
MFKHINKKKWLIVVGIILAVLNGLALYIINANIANTLAASEMQDPAVELAAQQNGFLGMIFAAVVITLDIIGVMFLLYLLYKFITKILNKSLPKRP
>NZ_CP041687.1|WP_143851934.1|917385_918672_-|citrate-synthase
MSDNKVVLNYDGKSFEYPIIDSTIGDRGIDISKLRDQTGLITLDLGYKNTGATKSDITYLDGDNGELYYRGYPIDQIAEKSNFTEVMYLLLNGDLPTNDQFQGFEKGIKKYNFVADEMKRLIDVFPRSAHPMGVLSSLTSALTAFNPKSVDVTSKEEMDHAAEMLIAKFSHLCAWTYRKKMGLPINHGDNSLNYVENFYKMCFRRPNEEFELDSTIVNALDKLLILHADHEQNCSTSTVRMVGSAHTGLFASVSAGISALWGPLHGGANQAVIEMLEMIEKDGGDVAKYVEKAKNKDDNFRLMGFGHRVYKNFDPRARIIKKAADDIFAALGIEDKALDIALQLEKVALEDEYFIERKLYPNVDFYSGIIYRALGIPTEMFTVMFALGRLPGWISQWKEMRLHNDPIGRPRQVYQGATKRDYVDMNAR
>NZ_CP041687.1|WP_143851936.1|918752_920045_-|phosphopyruvate-hydratase
MSYISYIDARQILDSRGNPTIEVDVFTEAGSMGRAAVPSGASTGEHEAVELRDGEKEFGGKGVLKAVENVREIIAPELIGTSVFEQNFIDQVMIELDGTPNKANLGANAILGVSLAVAKAAALDLKIPLYKYIGGVNANTLPVPMMNVINGGSHSDAPIAFQEFMIMPVKADSFSHALQKGTEIFHELKAILKTRNLSTAVGDEGGFAPKFKGTEDALDTLTQAIENAGYKAGDDIMFALDSAASEFYVDGKYDYRKFEGENGACRTREEQVDYLAELASKYPIISIEDGMDENDWEGWKLLTERLGKTVQIVGDDLFVTNSEILAKGIKEDIANSILIKVNQIGTLSETMDAVQMAQHNGYTTVMSHRSGETEDSTIADLAVAMNCGQIKTGSASRSDRMAKYNQLLRIEEALGDTAYFPGLDAFKIKR

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Crispr_ID: NZ_CP041687_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041687_2

1934023-1934136

Orphan

Consensus_repeat	Method
AGATGTTGCAGGTCCAGTTGAAAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041687_2

>merge|NZ_CP041687|2|1934023-1934136|CRISPRCasFinder
AGATGTTGCAGGTCCAGTTGAAAACAACGGATGTCCTTGGCCAGATACTGACGGAGACGGTGTTGTTGATAAAGACGATGCTTGTGTAGATGTTGCAGGTCCAGCTGAAAACAA

>NZ_CP041687|2|2|1934023-1934136|CRISPRCasFinder
AGATGTTGCAGGTCCAGTTGAAAACAA	CGGATGTCCTTGGCCAGATACTGACGGAGACGGTGTTGTTGATAAAGACGATGCTTGTGT
AGATGTTGCAGGTCCAGCTGAAAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041687.1\|WP_143852839.1\|1930911_1932534_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NZ_CP041687.1\|WP_143852836.1\|1927207_1928929_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP041687.1\|WP_143852846.1\|1939309_1939924_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|372627
NZ_CP041687.1\|WP_143852849.1\|1941288_1942539_+\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|234968
NZ_CP041687.1\|WP_143852833.1\|1923612_1925454_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP041687.1\|WP_143852844.1\|1936403_1937375_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|273203
NZ_CP041687.1\|WP_143853904.1\|1917761_1922699_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|367909
NZ_CP041687.1\|WP_143852832.1\|1923163_1923577_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|376496
NZ_CP041687.1\|WP_143852847.1\|1940086_1940566_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP041687.1\|WP_143852834.1\|1925453_1925972_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NZ_CP041687.1\|WP_143852842.1\|1934781_1935522_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP041687.1\|WP_143852851.1\|1945717_1946824_+\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_CP041687.1\|WP_143852845.1\|1937390_1939247_-\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|225487
NZ_CP041687.1\|WP_143852837.1\|1929235_1929943_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372666
NZ_CP041687.1\|WP_143852843.1\|1935579_1936404_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NZ_CP041687.1\|WP_143852838.1\|1929985_1930792_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372666
NZ_CP041687.1\|WP_143852850.1\|1943007_1945449_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP041687.1\|WP_143852840.1\|1932713_1933172_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP041687.1\|WP_143852835.1\|1926052_1927204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041687.1\|WP_143852848.1\|1940571_1940991_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965

Protein	Function_ID	Function_description	E-value
NZ_CP041687.1\|WP_143852839.1\|1930911_1932534_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP041687.1\|WP_143852836.1\|1927207_1928929_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	7.75641e-166
NZ_CP041687.1\|WP_143852846.1\|1939309_1939924_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|372627	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.	1.88712e-31
NZ_CP041687.1\|WP_143852849.1\|1941288_1942539_+\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	2.59057e-116
NZ_CP041687.1\|WP_143852833.1\|1923612_1925454_-\|potassium-transporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	6.33269e-176
NZ_CP041687.1\|WP_143852844.1\|1936403_1937375_+\|glycosyl-transferase	gnl\|CDD\|273203	TIGR00661, conserved_hypothetical_protein, conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. [Hypothetical proteins, Conserved].	2.99169e-45
NZ_CP041687.1\|WP_143853904.1\|1917761_1922699_-\|translocation/assembly-module-TamB	gnl\|CDD\|367909	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex. TamB is an integral inner membrane protein that forms a complex - the translocation and assembly module or TAM - with the outer membrane protein, TamA. TAM is responsible for the efficient secretion of the adhesin protein Ag43 in E.coli K-12.	5.07535e-46
NZ_CP041687.1\|WP_143852832.1\|1923163_1923577_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|376496	pfam01220, DHquinase_II, Dehydroquinase class II.	1.28523e-72
NZ_CP041687.1\|WP_143852847.1\|1940086_1940566_+\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	1.21579e-05
NZ_CP041687.1\|WP_143852834.1\|1925453_1925972_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	3.74069e-27
NZ_CP041687.1\|WP_143852842.1\|1934781_1935522_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	2.38496e-111
NZ_CP041687.1\|WP_143852851.1\|1945717_1946824_+\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.93013e-132
NZ_CP041687.1\|WP_143852845.1\|1937390_1939247_-\|CocE/NonD-family-hydrolase	gnl\|CDD\|225487	COG2936, COG2936, Predicted acyl esterases [General function prediction only].	2.44789e-90
NZ_CP041687.1\|WP_143852837.1\|1929235_1929943_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|372666	pfam13668, Ferritin_2, Ferritin-like domain. This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	5.75426e-50
NZ_CP041687.1\|WP_143852843.1\|1935579_1936404_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	8.98674e-50
NZ_CP041687.1\|WP_143852838.1\|1929985_1930792_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|372666	pfam13668, Ferritin_2, Ferritin-like domain. This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	2.45136e-42
NZ_CP041687.1\|WP_143852850.1\|1943007_1945449_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.19152e-46
NZ_CP041687.1\|WP_143852840.1\|1932713_1933172_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	6.08537e-67
NZ_CP041687.1\|WP_143852848.1\|1940571_1940991_+\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	7.083e-14

>NZ_CP041687.1|WP_143852840.1|1932713_1933172_+|SsrA-binding-protein-SmpB
MKIEKSIAIFNKRARFEYEISEEIEAGMVLTGTEIKSLRSSKASITESFCQFIDGELYIINMMIDEYKLGTFYNHKTKRERKLLLHKRELQKFEKKLKDVGNTIIPLKLYINEKGKAKILIALGRGKKLFDKREGIKDRENKRNLDRILKKS
>NZ_CP041687.1|WP_143852839.1|1930911_1932534_-|ATP-binding-cassette-domain-containing-protein
MLTVSNLSLQFGKRVLFDEVNIMFSKGNCYGIIGANGAGKSTFLKILTGQQDPTSGSVSLEPGKRMSVLEQDHFAYDNFTVLETVLRGNQKLFEIKTEMDNLYAKEDFSDADGIKAGELGVLYDEMGGWNSESDAMTMLSNVGIKDEMHYQMMSELENQNKVKALLAQALFGNPDVLILDEPTNDLDIETIAWLEDFLSTYENTVIVVSHDRHFLDTVCTHIGDLDYAKLNLYTGNYSFWYQASQLATRQRQQANKKAEDKKKELQDFIARFSSNVAKAKQATARKKMIDKLNIEDIKPSSRRYPAIIFDTEREAGDQILEIKGLEKTKDGELLFSKIDLNLKKGDKVAIISKNSLAITEFFQILSGNVEADKGEFNWGITTNQSYMPLDNASFFQENISLVDWLRQFTKNDEERHEEYMRGFLGKMLFSGDEALKSCTVLSGGEKMRCMFSRMMLQRANVLLLDEPTNHLDLESITTLNNSLVNFKGNILLSSHDHEMLQTVCNRVVELTPKGIIDREMTYDEYLEDKKVKELQQQMYS
>NZ_CP041687.1|WP_143852838.1|1929985_1930792_+|ferritin-like-domain-containing-protein
MNLLNILDKLSDDQFFTKMTSRSEGLSDIANFGRKAAIASIPLGLGSFMATSAKAETTKDSVSAASDLIGALQLALTLEYLEDEYYRTGLAKSGLIPAGDKVVFQQISKHETAHVAFLKATLSSLGTSPGSKPTFDFTVGGTFQPFDDYQQFMILAQAFEDTGVRAYKGQAGNVASNKGVLQAALQIHSVEARHASQVRRMRANKGWIELKDGGRMPAETDAVYAGEENIMQAGFNTSSLFGAPAGSASFDEILSGDDASAIARLFIV
>NZ_CP041687.1|WP_143852837.1|1929235_1929943_+|ferritin-like-domain-containing-protein
MEKTVHVSNKGATLDTSRRNFLKLGGVGLMVAGLTIAGCREDDYQFPMDDVFDLGKGDLGILNYAYALEQLEADFYTKVVNNFYRGINDEERQLFTDIYHHEVIHRDFFKAAISGATSSILPKLEFKYDGVDFNSRDSILATSKALEDTGVAAYNGAGKYISNLDYLVIAGKIVSVEARHASAIRNIINPGSGDFSGDDVIDVNGLDLAKDPKDIVKIAGGFIKTPFTWKEQGIG
>NZ_CP041687.1|WP_143852836.1|1927207_1928929_-|single-stranded-DNA-specific-exonuclease-RecJ
MSQKWIYKAAPDEDTVDAISSSLGFGTFESKILVLRGIDNYQKAREFFKPNLNDIHNPFLMKDMQLAVDRIATAIENGEKIMVYGDYDVDGTTAVALVYLYLSKIVERKYLEYYIPDRNIEGYGISEEGIDYASKNGYSVIIALDCGIKALDKIEYAKKFGVDFIICDHHLPGEEIPAAVAVLDPKRKDCRYPFKELSGCGVGFKLCQGLNTIYKIPEAELFELTDLLAISIAADIVSMSGENRVLAKQGLKVLRKTRNLGLRMLIPEDKLATFEISNIVFEIAPKINAAGRISQGKAAVELMVSDNLKHAHQIVNDIINLNDSRREMDMSSTTEALLQVETTGQLKNFSTVVYGPNWNKGVIGIVASRLIETYYKPTLVFADGNNGEIVASARSVADFDVHHALEMCSDLFLKFGGHPAAAGLSMEKDKFELFKEKFEKVVAAKIQEHQIEPSITIDSVVEIDDLNKDFFNFHRKLAPFGPDNMKPVLVLKNVKVAGYVKIMGKDNSHLKFFIRQESTGKNIECIGFKLGKYADDFRQKRFDIAFTAEENHWKGNVTYFLSIRDVKFNNMEA
>NZ_CP041687.1|WP_143852835.1|1926052_1927204_+|hypothetical-protein
MVQLKVDTKEGKREFLNFPARLFSKDKNYIRPLDQDIEKIFDPKKNKFFKLGECERYLFKNEKGETVGKIAVFINKKYKQSQLTGGIGFFDCIDDQKVADFIFDFCKDWLQQKGMEAMDGPINFGERDQFWGLLIEGFSEPLYAMNYNPPYYKNLFENYGFEIFFNQLCFGRKIHDPVAQNFMDMHERISKNENITAKPLKIKYLNKFAEDFAEVYNKAWASHGEGKQFTTTQTLKLFNNLKPVINEHISWFVYENEKPIAFWMNIPDLNQWFKFFNGKFGILQKIAFLIIKKFRKNRKMVGLVFGIVPEWQRKGIDGFLIWEGTKHFKETTDFEDYEMQWIGDFNPKMIKIAKNLETSVSRKLATYRYLFDREKEFEKHKVL
>NZ_CP041687.1|WP_143852834.1|1925453_1925972_-|NAD(P)H-dependent-oxidoreductase
MKKTLAIFAHPYFEYSSTNLELIKAYSTSDDLIFKDLYEEYPDFHILTFRERKRIKEFERLVFHFPLIWFGLPPLLKLWIDEVFDMSWKAESKHPLNNKDAIIIVTIGASAENYQKDGLYHTTIKELMKTLMLSLEVNGIEIKEIIAVYEADDLEEDQLKEITAKIIKSLNT
>NZ_CP041687.1|WP_143852833.1|1923612_1925454_-|potassium-transporter
MAEASLAQTALIFLGAAIIMVPLVRKLGLSSVIGFILGGIIIGPFGLKLTGNDSKDIMDATEFGVIMLLFLVGLEIEPKKFWVIRKKIIGMGLGQMAFTISILFLIFYWAGWRTDKALVAALCFGMSSTAIVLQTLKEKNIFRTEVGEASFSILLFQDIAVIPILALLPVIAQQSEKNENQILLQLLPDWLQPFSIILGIAALIILGRYIFVPFLRYVSRSGMNELLTASSLFLVIGVSELMNSVGLSAALGAFIAGVMLATSEFRHELESQIDPFKGLLLAVFFVSVGATINFFVIMEDPMFIFTTTVVVLIVKFGVLMGVGKFFKLKLHQNFLVAFGLAQIGEFAFVLINYSTNLYLLDPKLNAQLMAITAITMCVTPILLIINEKFIEPRTHNIKKEPEELDTPIKMQKIIIVGFGHFGSTVGRLLRVNGITATVLDNDPERVNLLRSNGFKVYFGDAAKPGILRSAGAETADLLILCLDSPEKNKFILEYARENFPQMKIFVRAKNRSDAYDFINNGVDDIYRETLGTAVNMAVDILKATGMRAYAARRLGQRFTVIDKAMTRKLAKEQLKDKVTFTMKEYLEREADLLAEDSNSFDESQWNEYEEYQN
>NZ_CP041687.1|WP_143852832.1|1923163_1923577_+|type-II-3-dehydroquinate-dehydratase
MKILILNGPNLNLLGTREPEIYGTVSMDDYVINLRTEFPQHEIFSDQSNVEGELINRLQKNDFDALIINPGAFTHYSYAIADCLKNISKPKIEVHISNIYKREEFRQKSVTAVNTDGVISGFGMKGYFLAISSLSSK
>NZ_CP041687.1|WP_143853904.1|1917761_1922699_-|translocation/assembly-module-TamB
MIVLVLSLQLPSVQNFAKGKLVNYLEKKIKTKVSLDRVYVGFPNSLVMENLYLQGQKVDTLLFARKLDVGLNIPKLLNNTADITSVDLQGVKANVIRNENGTFNFDYILDAFATKDEEETPSKPFIISLDKIKLKDIGISFIDNQSRNDINLYFKSFDTRVKTFDLEKNSYAMNDINMDGLRLKLKQDLLEEVTDKVEKKVDSLQKQSPLKLGLNKIKLTNFNIDYGDDNTKTFAKVIFKELSTKISKLDLEKSDFGVENLYLKGADINAKLFLPAQNANPKKTETTPNSNDTSLALLLNKLILDDVKVVYDNTAIAPTRSGMDFNHLNFSKMNLELSDFKMKDGTFAGQVKSAEIKEGRGLDIQKFETDFVFEDQQAYLKDLYLQTSKTILRDEVVLNYNSIEQLSANPGAVKITANIQKSKVGFSDILMLVPTLRNTAPFNKYPNAILNVNTRLKGTVNDLQIQNLELSGIDQLKVHASGNVKNAMDPDHLYYDLNVRELSSSAKTIYNLVPKNTIPTNISLPSYFKIVGKAKGTTQIVNTNLKITSTLGNAGIRASVDMKRKDQERYDLMANLQNLQIGKIIQNKDLGSITGQIAVKGQSFDPNKANADIKGNIKSVAYNGYTYQNMALTGKVNRGAYVINLDSKDPNANLKLLASGSFTDKDPSIKVNGTIRKLDLNKLGFYDDQMILAGDLDGDFSSLNPDAPNGYLTLKNFAISDTKDVFPLQEVFLNAVSTADSNRITLKSQIADIDLHGKYKLTQILGSLQNTINQYYQYQKPGTKIAKIDANQFFTFNAKIKDDNLLRKFVPELTEFEPITLVGNYDADSRKLEINGQIPQVTYGANKISGGTLSINNLNDALVYDVKLAEFKNESMALQKVSLNGDVKDNLITYNASTKDGKDTTQFLVAGNVEKIGDLTKITLNPNGLTLNYDNWQVSPENYLQISSGGILANSFAISNNGSEIRVQSETNVPNSPLNIDLKNFKIETITELIKKDSLLAKGNINGTAQLRDLKNNMTFTSDIDVTDLFVYGSPVGNLDIKASNQSADLIRADIALSGFDNDVKLGGTFNTKSSGLDMNLNMKQLQMKTVQGLSMNAIENAEGFLSGNLKISGKTDAPNVLGGIKFNDVGLGITQLGSSFKHINDEIRFTNRGIDFNDFKIKDESGNAIVIDGSVLTKTYKDFAFNLDVNAKNFKVVDSEKENDKIMYGVLAIDADLKIRGDLDLPQVDGNLAVTDKTDFTFVLPQSSPSLEDREGIVEFIDQDQIALQKTVKADSLTDQSQIKGMDVNVNIEVNKEAKISLIIDKANGDFVKLQGEAQLTGGIDPSGKTTLVGVYQVEKGAYEMSVSLLKRKFEIEKGSTITWTGEPMTANLDITAVYKTDAAPLDLLQQQLTGVSGNQLNQYKQRIPFNTLLMMKGELMKPIITFDITTSKENNSVSAEVIDNTTAKLDQLRRDESEMNKQVFALLLLNRFIGENPFQSETGLSASTLAKQSVSRILSEQLNNLAKDLIGGVELNFDLESTEDYSTGNKNERTDLNIGLSKRLFDDRLKVTVGNNFALEGDAREKEQMTNIAGDITLDYSLSKDGRYMLRAYRKNDYQVALQGQIIETGIGFIITLDYDKFREIFEKSKKNKEIRKQNTSSK
>NZ_CP041687.1|WP_143852842.1|1934781_1935522_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRAFEYRKASKMARWDKMAKTFSKIGKDIALAVKSGGPDPDTNPGLRRCIQNAKGANMPKDNVERAIKKASGVDAEHYEEITYEGYGQGGVAFFVECTTNNPTRTVANVRAIFNKFDGNLGKNGELAFIFDRKGIFSLDKSLIKLDWDDFEMEMIDGGAEDIDHDEVEVFITTAFEDFGTLSHKLEELGIEPKSAEVQRIPNNTKEVTADQFKSNMKMLDRFEEDDDVQNVYHNMEITEELLELI
>NZ_CP041687.1|WP_143852843.1|1935579_1936404_+|UDP-2,3-diacylglucosamine-diphosphatase
MKRNVDLVVISDVHLGTYGCKAKELLQYLNSIEPKTLILNGDIFDIWNFKKSYFPKSHLKIIRKILSFASTETDIYYITGNHDEMFRKFTDFEIGNLQVCNKICLNLDNKKTWIFHGDVFDASVQHSKWIAKLGGKGYDLLIMINNLTNWLLVKMGREKYSFSKKIKNSVKNAVKFIGDFELTAAELAIDNGYNYVVCGHIHQPQIREVVTKKGSCVYLNSGDWVENLSALEYHQKKWSIFYYEEHKHLLKEDVSTEFPEISQIELMKIVTNFS
>NZ_CP041687.1|WP_143852844.1|1936403_1937375_+|glycosyl-transferase
MKVLYAFQGTGNGHVARAQEIVPILKKHVQVDTLISGHQSQLKSNFTVDFKYKGVSLLYNKAGGLSYRKTFLENNFFEAAKNIMDIDLSQYDLIINDFEPLTGWASRFNSVPIIELSHQASFGFKETPKPKTKNFLGELVLNNYVPCVRKIGFHFENYHVQIKKPVIRGKIRDLYPTKRGYYMVYLPSFSNENIMHVLKKIPVEWKVFTKNNSLHLKEGNVEIFPIDEIRYLEYFENCEGILCSAGFETPAEALFMEKKLFVIPIRNQYEQECNACALDQLGIPNSKTLNDEDIMKWVATDFDIKVNYPNVIEEILLNEVLTF
>NZ_CP041687.1|WP_143852845.1|1937390_1939247_-|CocE/NonD-family-hydrolase
MKKTFQLLLLLFFVFSFAQKQPDNSFVKENFIKKELYIPMRDGVKLFTSIYIPKDISKSKKYPFLMQRTCYSVAPYGEEVYRPSLGPNKYLMNDKYIFVYQDVRGRYMSEGTFTNMTPQVQHKTKKDVDESTDTYDTIDWLIKNISNNNGKIGQYGTSYPGFYTAAGTISEHPALVASSPQAPISDFWNDDFLHNGRFMLGYFRTFPVFGVQKTKAENKAWYMDTFVKQTSEDGLKFYRDMGTLKDGYEKYYKDNFFMTEIMNHPNYDEFWQKRSLLPHLKNINHAVMTVGGWFDAEDLSGPLNIYKTIEKTSPKAKNTIVMGPFSHGAWSREPGKQFHNEIFFGDSISTYYQTKLETPFFKHYLKGDAKVDAGLPEATMFDTGKMEWKEFSVYPPNNTQKLSLYLADGTLRNQSSKNISEYYSDPNNPVLSSANLKDFNGFTPRNYMSEDQRFAEGRPDVLTFTTELLTEELTLTGEILAKLNISSTSTDADFVVKLIDIYPEDFVPKEKKEGIVYGNYHQMVRSEIMPARFRNSREKGEALVPNQKTSVAVKLQDVLHTFKKGHKIQIQIASSWFPLFAINPQKFMENPNFATKDDYTKAFIKIFGDSSIEVNVLK
>NZ_CP041687.1|WP_143852846.1|1939309_1939924_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MNLFENTDAPTINLLPQDGTVNYFGKIFGKGRADDYFEKLLDKIEWKNDEAVIFGKRIITKRKVAWYGDKNFQYTYSKLTKTALPWTKELLELKEIVEKKTGEQFNSCLLNLYHDGSEGMAYHSDAEKDLKKNGAIASLSFGAERKFSFKHKTNKERIDIDLHNGSLLVMKDQTQTFWLHRLPASKKISSPRINLTFRMIENHD
>NZ_CP041687.1|WP_143852847.1|1940086_1940566_+|BON-domain-containing-protein
MKKTIAMATLALAVSFGSIACKKKVSDAELQTQATTVVTSNPNASVEVKDGQAHLSGTFADKASKDAMIASLKAIPGVKDVHDMSTIAEPVVVETTAAVDPANVQKVTDALKDFPSVKAEVINGELTLTGNVSPAQARNIKMSVDALQVGKVNYNYTVK
>NZ_CP041687.1|WP_143852848.1|1940571_1940991_+|SH3-domain-containing-protein
MSALQDKYASVISAAQSSGVSNLQVSEQDGILYVSGKASSSSAKDAVWNALGAIDSTYSASDINVDVQVAGLAAGASLKVNTESSNLNIRQEPSTEAAVVGKAAKGESVTLVEQTSEEWWKVKTADGEEGYAYARYLQA
>NZ_CP041687.1|WP_143852849.1|1941288_1942539_+|cation:dicarboxylase-symporter-family-transporter
MKGQNKLFIAIIIALIIGVVMGGVVHTQYPESSEGFSKNIKLLGTIFIRLVQMIIAPLVFTTLVVGIAKMSDIKMIGRVGTKAMLWFITASLVSLMIGLAFVNWLEPGLVMQLDKPAADAAVEVVASSQGLSLEEFVKHIIPKSLFEAFATNEVLQIVVFSIMFGIALANMGEEYTKPIVKALDICAHAILKMVGYIMWFAPLGVLGAIAAVVATNGFDIFKVYAIYLRDFFFALAVLWLVLCIVGYMILGNRLFELLRRIKEPLLIAFSTTSSEAVFPKLVEELERFGCNNRIVSFILPLGYSFNLDGSMMYMTFAAIFIAQIYGIDMTLGQQVIMLLVLMLTSKGIAGVPRASLVIIVATCTMFGIPPEGIALILPIDHFCDMGRSMTNVLGNALATSAVSKWEGQLDNHGGDL
>NZ_CP041687.1|WP_143852850.1|1943007_1945449_-|TonB-dependent-receptor
MKKIVLALILCVCTLTYAQNTQKDSDTLSVQGIDEITVTGSRNKKRTAIDTPVPVDMIDVKQISQATGQVDVNQLLQFAAPSFNSNKQSGSDGSDAVDPATLRGLGPDQTLVLLNGKRYHQSSLVNLFGTKGRGNSGTDMNTIPLDAIKRIEVLRDGASAQYGSDAIAGVINVILNDRKQGFEAKAFYGVNLFRSPDGGNDVVSDKKLDGQTFDFSGNYGTKIGGKGGFINITGEVLSKGYAFRNANPTLYTAPRQRFGDAKSNNYYLFYNAEVPLTEKTDFYSFGGYSYRNTDAYAWTREADADGNIPSIYPNGFNPIENTMIKDFNFNNGLKFKAANWDVDLYNAFGSNQFLYDIKNTVNATLGANSKTNFNAGGHSLLQNTTGFNASKGFEVLEGLNIAFGSEFRYEQFKIIKGEEQSYASYDINGNIVTALTPIGLLVTNPISGDVRPGGSQGFPGYSLAVNQNRNNFAAYLDTELDITKSWMVSAAGRFENYSDFGSTINGKLATRIKITDQLALRGSFSSGFRAPSLVQKFYGLNFTNFQGGNLVTIQLASNDSDLAKAAQIPQLKQEKSLNGSAGITFNSSKFTATLDGYYVRVKDRIVLTGNFDQSDSQIGQDLIDAKVDQAQFFANAIDTKTLGLDVILTYTENIGSGKLTSSFAANFNDMEITSVNTPANLTGKEEIFLSPRERAFILASAPKNKFNLSLNYKINNFNINLQEVRFDKVALIGYNGPDDYQFYDARLTTDLSFGYDFTKKLNFTIGSKNLFNRYPTMQKIAVSDGNTESGGIFDPVQMGFLGRQIFTRLNYTF
>NZ_CP041687.1|WP_143852851.1|1945717_1946824_+|P-loop-NTPase
MLTKEKVQAFLKEIEVDDLVHNFQVMGNDVYIDMTAHSPAMHEKKKLEAAMKQAFASEFGEEIVLKLKIASPEPSEVQQNQIKGKQIKGIQNIIAIASGKGGVGKSTVAANIAVTLANMGFKVGVLDADIYGPSIPTMFDTEGAKPISVEVDGKSLMKPVENYGVKMLSIGYFSGANQAVVWRGPMASKALNQMIRDADWGELDFLLVDLPPGTGDIHLSIIQEVPVTGAIIVSTPQHVALADVRKGIAMFQMESINIPVLGLVENMSYFTPEELPDNKYYIFGNQGAQYLAEDLGIPVLGEIPLIQSIRESGDVGRPASLQEGSKIAEIYKKTTQNMIESLVERNKSLPPTEAVKITTMAGCSPKSK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1299611 : 1326706

Leptospira_phage(33.33%)

protease,transposase,head,tail,integrase

attL 1290225:1290240|attR 1322393:1322408

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1290225:1290240	attL	NA	NA	NA	NA
WP_143852353.1\|1299611_1300382_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_143852354.1\|1300534_1301647_+	DUF3078 domain-containing protein	NA	NA	NA	NA
WP_143852355.1\|1301649_1303185_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_143852356.1\|1303260_1304166_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_143852357.1\|1306077_1306407_-	hypothetical protein	NA	NA	NA	NA
WP_143852358.1\|1307939_1308164_-	hypothetical protein	NA	NA	NA	NA
WP_143852359.1\|1308377_1309274_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_143852360.1\|1309203_1309518_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	5.8e-05	39.4
WP_143852361.1\|1309607_1310246_-	thymidylate synthase	NA	NA	NA	NA
WP_143852362.1\|1310405_1310846_-	M15 family metallopeptidase	A9DET4	Yersinia_phage	1.0e-23	46.2
WP_143852363.1\|1310842_1311454_-	hypothetical protein	NA	NA	NA	NA
WP_143852364.1\|1311482_1311881_-	hypothetical protein	NA	NA	NA	NA
WP_143852365.1\|1311877_1312447_-	hypothetical protein	NA	NA	NA	NA
WP_143852366.1\|1312451_1314863_-	hypothetical protein	NA	NA	NA	NA
WP_143852367.1\|1314869_1315637_-	hypothetical protein	NA	NA	NA	NA
WP_143852368.1\|1315642_1316104_-	hypothetical protein	NA	NA	NA	NA
WP_143852369.1\|1316093_1316966_-	nucleotidyltransferase	NA	NA	NA	NA
WP_143852370.1\|1316965_1317259_-	hypothetical protein	NA	NA	NA	NA
WP_143852371.1\|1317242_1317584_-	hypothetical protein	NA	NA	NA	NA
WP_143852372.1\|1317583_1317823_-	hypothetical protein	NA	NA	NA	NA
WP_143852373.1\|1317819_1318317_-	hypothetical protein	NA	NA	NA	NA
WP_143852374.1\|1318316_1319288_-	hypothetical protein	NA	NA	NA	NA
WP_143852375.1\|1319287_1320004_-	hypothetical protein	NA	NA	NA	NA
WP_143852376.1\|1320003_1321956_-\|tail	phage tail tape measure protein	A0A218M786	Flavobacterium_phage	1.0e-22	24.8
WP_143852377.1\|1322119_1322416_-	hypothetical protein	NA	NA	NA	NA
1322393:1322408	attR	NA	NA	NA	NA
WP_143852378.1\|1322459_1322876_-	hypothetical protein	NA	NA	NA	NA
WP_143852379.1\|1322885_1324088_-	hypothetical protein	NA	NA	NA	NA
WP_143852380.1\|1324094_1324403_-	hypothetical protein	NA	NA	NA	NA
WP_143852381.1\|1324395_1324737_-	hypothetical protein	NA	NA	NA	NA
WP_143852382.1\|1324746_1325661_-	hypothetical protein	NA	NA	NA	NA
WP_143852383.1\|1325755_1326706_-\|head,protease	caudovirus prohead protease	NA	NA	NA	NA

DBSCAN-SWA_2

1813293 : 1890185

Leptospira_phage(40.0%)

transposase,tRNA,integrase

attL 1885498:1885516|attR 1894449:1894467

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143852807.1\|1813293_1816611_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	6.9e-189	36.6
WP_143852808.1\|1816873_1817743_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_143852809.1\|1817819_1818422_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_143852810.1\|1818429_1819002_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_143852811.1\|1819034_1819871_+	energy transducer TonB	NA	NA	NA	NA
WP_143853899.1\|1819947_1820142_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_143852812.1\|1820131_1821001_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_143852813.1\|1821101_1822766_+	hypothetical protein	NA	NA	NA	NA
WP_143853900.1\|1829257_1829569_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_143852814.1\|1829725_1830019_-	hypothetical protein	NA	NA	NA	NA
WP_143853901.1\|1830216_1831830_-	hypothetical protein	NA	NA	NA	NA
WP_143852815.1\|1831953_1832538_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_143852816.1\|1832614_1832950_+	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_143852817.1\|1833277_1835494_+	TonB-dependent receptor	NA	NA	NA	NA
WP_143852818.1\|1835602_1836526_-	amidinotransferase	NA	NA	NA	NA
WP_143852819.1\|1836599_1837262_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_143852820.1\|1837402_1838317_-	amidinotransferase	NA	NA	NA	NA
WP_143852821.1\|1838616_1840122_+	PDZ domain-containing protein	W5SAB9	Pithovirus	8.4e-09	29.5
WP_143852822.1\|1840173_1840614_-	hypothetical protein	NA	NA	NA	NA
WP_143852823.1\|1840614_1840995_-	RidA family protein	NA	NA	NA	NA
WP_143852824.1\|1841043_1843629_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_143853902.1\|1843682_1844978_+	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	1.5e-14	30.1
WP_143852825.1\|1845198_1845453_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_024567399.1\|1845623_1850750_-	DEAD/DEAH box helicase family protein	Q6NE28	Leptospira_phage	9.5e-121	27.9
WP_024565606.1\|1850742_1851423_-	hypothetical protein	NA	NA	NA	NA
WP_024565605.1\|1851498_1853871_-	hypothetical protein	NA	NA	NA	NA
WP_024565604.1\|1853883_1854606_-	hypothetical protein	NA	NA	NA	NA
WP_024565603.1\|1854595_1855444_-	M23 family metallopeptidase	A0A2K9VGT1	Pontimonas_phage	1.1e-16	40.3
WP_024565602.1\|1855433_1857428_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_024565601.1\|1857434_1857674_-	hypothetical protein	NA	NA	NA	NA
WP_024565600.1\|1857676_1858546_-	DUF4138 domain-containing protein	NA	NA	NA	NA
WP_024565599.1\|1858548_1859757_-	conjugative transposon protein TraM	NA	NA	NA	NA
WP_024565598.1\|1859752_1860106_-	hypothetical protein	NA	NA	NA	NA
WP_024565597.1\|1860108_1860723_-	conjugative transposon protein TraK	NA	NA	NA	NA
WP_029738611.1\|1860728_1861979_-	membrane protein	NA	NA	NA	NA
WP_024565595.1\|1861981_1862812_-	hypothetical protein	NA	NA	NA	NA
WP_024567401.1\|1862816_1863482_-	hypothetical protein	NA	NA	NA	NA
WP_024567402.1\|1863484_1864192_-	hypothetical protein	NA	NA	NA	NA
WP_086979052.1\|1864235_1864877_-	hypothetical protein	NA	NA	NA	NA
WP_024567404.1\|1864944_1868019_-	TraG family conjugative transposon ATPase	A0A1V0SI04	Klosneuvirus	2.2e-08	46.9
WP_024567405.1\|1867990_1868305_-	hypothetical protein	NA	NA	NA	NA
WP_024567406.1\|1868306_1868630_-	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_024567407.1\|1868666_1869200_-	hypothetical protein	NA	NA	NA	NA
WP_024567408.1\|1869262_1869916_-	ParA family protein	NA	NA	NA	NA
WP_024565586.1\|1869918_1871388_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_024565585.1\|1871384_1871735_-	hypothetical protein	NA	NA	NA	NA
WP_024565584.1\|1871758_1872553_-	hypothetical protein	NA	NA	NA	NA
WP_001043260.1\|1875355_1876171_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_095073168.1\|1876242_1877151_-\|transposase	IS1595-like element ISBbi1 family transposase	NA	NA	NA	NA
WP_024565583.1\|1877822_1878293_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024567409.1\|1878323_1879394_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.1e-30	33.8
WP_139233531.1\|1879746_1880502_+	LinF	NA	NA	NA	NA
WP_008651082.1\|1880655_1881822_+	tetracycline-inactivating monooxygenase Tet(X)	NA	NA	NA	NA
WP_005938297.1\|1882009_1882867_+	class D beta-lactamase	NA	NA	NA	NA
WP_095073170.1\|1883072_1884299_-	EreD family erythromycin esterase	NA	NA	NA	NA
WP_143852826.1\|1884692_1885811_-\|transposase	IS91 family transposase	NA	NA	NA	NA
1885498:1885516	attL	NA	NA	NA	NA
WP_143852827.1\|1885794_1886748_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.7e-31	31.4
WP_035589996.1\|1887124_1887754_-	type B chloramphenicol O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	7.3e-23	33.5
WP_143852826.1\|1888129_1889248_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_143852827.1\|1889231_1890185_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.7e-31	31.4
1894449:1894467	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2324992 : 2337944

Bifidobacterium_phage(10.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143853166.1\|2324992_2327530_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	1.2e-12	31.0
WP_143853167.1\|2327534_2327786_+	hypothetical protein	NA	NA	NA	NA
WP_143853168.1\|2327776_2329609_+	DEAD/DEAH box helicase family protein	B3GAN0	uncultured_virus	2.4e-50	31.8
WP_143853169.1\|2329613_2330003_+	hypothetical protein	NA	NA	NA	NA
WP_143853170.1\|2330004_2330619_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	2.8e-11	35.5
WP_143853171.1\|2330637_2331429_+	DUF4373 domain-containing protein	D2IZY0	Enterococcus_phage	2.2e-37	55.3
WP_143853172.1\|2331397_2332285_+	hypothetical protein	R9ZY05	Cellulophaga_phage	2.7e-23	32.1
WP_143853173.1\|2332332_2332776_+	hypothetical protein	NA	NA	NA	NA
WP_143853174.1\|2332792_2333266_+	hypothetical protein	H9YSE1	environmental_Halophage	1.9e-15	51.4
WP_143853175.1\|2333262_2333853_+	hypothetical protein	A0A0E3GMP6	Bacillus_phage	2.3e-18	33.7
WP_143853176.1\|2333907_2334543_+	hypothetical protein	A0A1P8VWB3	Flavobacterium_phage	5.4e-58	55.8
WP_143853177.1\|2334608_2335529_+	site-specific DNA-methyltransferase	D6PSV9	Lactobacillus_phage	1.9e-48	41.5
WP_143853178.1\|2335535_2335961_+	hypothetical protein	NA	NA	NA	NA
WP_143853179.1\|2335964_2336324_+	hypothetical protein	NA	NA	NA	NA
WP_143853180.1\|2336363_2337944_+	hypothetical protein	A0A0S1S1Z6	Klebsiella_phage	4.3e-40	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041688

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10311

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143853941.1\|1686_2100_-	hypothetical protein	NA	NA	NA	NA
WP_143853942.1\|2426_3296_-	restriction endonuclease	NA	NA	NA	NA
WP_143853943.1\|4042_5212_-	hypothetical protein	NA	NA	NA	NA
WP_143853944.1\|7088_7517_-	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_143853945.1\|7606_8179_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_143853008.1\|8994_10311_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.1e-28	29.5

DBSCAN-SWA_2

16031 : 20762

Leptospira_phage(50.0%)

integrase

attL 13629:13643|attR 29162:29176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
13629:13643	attL	NA	NA	NA	NA
WP_143853951.1\|16031_17075_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.9e-29	31.7
WP_143853952.1\|17675_17963_+	hypothetical protein	NA	NA	NA	NA
WP_143853953.1\|18016_18310_+	hypothetical protein	NA	NA	NA	NA
WP_143853954.1\|18468_18978_+	hypothetical protein	NA	NA	NA	NA
WP_143853955.1\|19161_19743_+	hypothetical protein	NA	NA	NA	NA
WP_143853956.1\|20003_20762_+	AAA family ATPase	E9LUK9	Lactobacillus_phage	5.0e-10	29.9
29162:29176	attR	NA	NA	NA	NA

DBSCAN-SWA_3

23766 : 35587

Escherichia_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143853959.1\|23766_24330_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	4.8e-42	45.2
WP_143853960.1\|24358_25090_-	DUF3891 family protein	NA	NA	NA	NA
WP_143853961.1\|25126_27700_-	cyanophycin synthetase	I4AZE7	Saccharomonospora_phage	6.7e-06	40.5
WP_143853962.1\|28038_30597_+	DNA ligase D	A0A076GD42	Sinorhizobium_phage	2.0e-34	31.4
WP_143853963.1\|30646_31237_-	DUF1989 domain-containing protein	NA	NA	NA	NA
WP_143853964.1\|31240_31918_-	YqcI/YcgG family protein	NA	NA	NA	NA
WP_143853965.1\|32383_32593_+	hypothetical protein	NA	NA	NA	NA
WP_143853966.1\|32950_33958_+	DUF1016 family protein	Q9JMP5	Wolbachia_phage	2.8e-53	34.2
WP_143853967.1\|34027_35587_+	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	5.4e-43	28.3

DBSCAN-SWA_4

41743 : 58144

Aeribacillus_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143853971.1\|41743_42415_+	DUF4145 domain-containing protein	A0A1L2JZ52	Aeribacillus_phage	4.5e-31	35.5
WP_143853972.1\|42411_45552_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.3e-55	24.2
WP_143853973.1\|45584_47036_+	exodeoxyribonuclease VII large subunit	A0A2P1EJT5	Megavirus	8.6e-11	22.2
WP_143853974.1\|47001_47205_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_143853975.1\|47320_47860_+	hypothetical protein	NA	NA	NA	NA
WP_143853976.1\|48278_48728_-	PA2169 family four-helix-bundle protein	NA	NA	NA	NA
WP_143853977.1\|48946_49417_+	hypothetical protein	NA	NA	NA	NA
WP_143853978.1\|49441_50305_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	2.2e-54	44.4
WP_143853979.1\|50403_50685_+	hypothetical protein	NA	NA	NA	NA
WP_143853980.1\|50803_51436_+	SOS response-associated peptidase	NA	NA	NA	NA
WP_143853981.1\|51435_52026_+	hypothetical protein	NA	NA	NA	NA
WP_143853982.1\|52128_53295_-	alcohol dehydrogenase catalytic domain-containing protein	E3SJ82	Synechococcus_phage	2.2e-09	28.0
WP_143853983.1\|54399_55368_+	DUF1738 domain-containing protein	A0A1B1IRD0	uncultured_Mediterranean_phage	2.9e-18	29.8
WP_143853984.1\|55594_56326_+	hypothetical protein	NA	NA	NA	NA
WP_143853985.1\|56381_57389_+	hypothetical protein	Q9EYF3	Enterobacteria_phage	3.9e-10	28.8
WP_143853986.1\|57388_58144_+	response regulator	A0A2R2ZGH8	Clostridioides_phage	2.5e-09	25.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041687

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041688

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection