CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040916	Streptomyces spectabilis strain NRRL 2792 chromosome, complete genome	11 crisprs	csa3,casR,DEDDh,WYL,cas4,cas3,PD-DExK,DinG,cas8u1,csb2gr5,csb1gr7	1	3	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040916_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_2

2049703-2049765

Orphan

Consensus_repeat	Method
ACAGCAGCCCTTCGGCCAGCAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_2

>merge|NZ_CP040916|2|2049703-2049765|CRISPRCasFinder
GATGCAGCAGCTCGGCCAGCAGCAGCCGTACCAGCAGCTGCTCCAGCAGCTCGGACAGCAGCA

>NZ_CP040916|2|2|2049703-2049765|CRISPRCasFinder
GATGCAGCAGCTCGGCCAGCAGCA	GCCGTACCAGCAGCT
GCTCCAGCAGCTCGGACAGCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144002532.1\|2047512_2049267_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173792
NZ_CP040916.1\|WP_144002525.1\|2040317_2041361_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP040916.1\|WP_144323394.1\|2039693_2040290_+\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|274521
NZ_CP040916.1\|WP_144002539.1\|2055789_2056845_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274647
NZ_CP040916.1\|WP_144002524.1\|2038926_2039649_+\|acireductone-synthase	unknown	unknown	gnl\|CDD\|319768
NZ_CP040916.1\|WP_144002530.1\|2045228_2045900_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225097
NZ_CP040916.1\|WP_144002535.1\|2051506_2052337_-\|SCO1664-family-protein	unknown	unknown	gnl\|CDD\|274813
NZ_CP040916.1\|WP_144002529.1\|2044362_2045115_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|99813
NZ_CP040916.1\|WP_144002531.1\|2046058_2047234_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378251
NZ_CP040916.1\|WP_144002541.1\|2058020_2060294_+\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273632
NZ_CP040916.1\|WP_144002542.1\|2060386_2061160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_030686241.1\|2052300_2052891_-\|DUF3090-domain-containing-protein	unknown	unknown	gnl\|CDD\|213872
NZ_CP040916.1\|WP_144002528.1\|2043740_2044370_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NZ_CP040916.1\|WP_144002536.1\|2052998_2053685_-\|MSMEG_4193-family-putative-phosphomutase	unknown	unknown	gnl\|CDD\|163560
NZ_CP040916.1\|WP_144002540.1\|2057034_2058024_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223739
NZ_CP040916.1\|WP_144002538.1\|2054779_2055568_-\|ferritin-like-domain-containing-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144002527.1\|2042421_2043744_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238623
NZ_CP040916.1\|WP_144002534.1\|2050164_2051394_-\|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase	unknown	unknown	gnl\|CDD\|183518
NZ_CP040916.1\|WP_144002526.1\|2041583_2042384_+\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_CP040916.1\|WP_144002537.1\|2053747_2054746_+\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213364

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144002532.1\|2047512_2049267_+\|S8-family-serine-peptidase	gnl\|CDD\|173792	cd04843, Peptidases_S8_11, Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.84598e-101
NZ_CP040916.1\|WP_144002525.1\|2040317_2041361_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	1.11988e-148
NZ_CP040916.1\|WP_144323394.1\|2039693_2040290_+\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|274521	TIGR03328, dehydratase-enolase-phosphatase_complex_1, methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine. [Amino acid biosynthesis, Aspartate family].	1.98909e-62
NZ_CP040916.1\|WP_144002539.1\|2055789_2056845_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274647	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis. [Unknown function, Enzymes of unknown specificity].	9.97929e-129
NZ_CP040916.1\|WP_144002524.1\|2038926_2039649_+\|acireductone-synthase	gnl\|CDD\|319768	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv. Oryzae enolase-phosphatase Xep. Enolase-phosphatase E1 (also called MASA) is a bifunctional enolase- phosphatase which promotes the conversion of 2,3-diketo-5-methylthio-1-phosphopentane to 1,2-dihydroxy-3-keto-5-methylthiopentene anion (an aci-reductone) in the methionine salvage pathway. The catalytic reaction is carried out continuously by enolization and dephosphorylation, and the enolase activity cannot be classified as typical enzymatic enolization. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.05321e-96
NZ_CP040916.1\|WP_144002530.1\|2045228_2045900_+\|FCD-domain-containing-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	8.94228e-48
NZ_CP040916.1\|WP_144002535.1\|2051506_2052337_-\|SCO1664-family-protein	gnl\|CDD\|274813	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.	1.76116e-125
NZ_CP040916.1\|WP_144002529.1\|2044362_2045115_+\|oxidoreductase	gnl\|CDD\|99813	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	6.27161e-85
NZ_CP040916.1\|WP_144002531.1\|2046058_2047234_+\|hypothetical-protein	gnl\|CDD\|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	1.07656e-50
NZ_CP040916.1\|WP_144002541.1\|2058020_2060294_+\|ATP-binding-domain-containing-protein	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	1.53473e-31
NZ_CP040916.1\|WP_030686241.1\|2052300_2052891_-\|DUF3090-domain-containing-protein	gnl\|CDD\|213872	TIGR03847, TIGR03847, conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.	4.59328e-85
NZ_CP040916.1\|WP_144002528.1\|2043740_2044370_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	2.6761e-94
NZ_CP040916.1\|WP_144002536.1\|2052998_2053685_-\|MSMEG_4193-family-putative-phosphomutase	gnl\|CDD\|163560	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.	3.7786e-113
NZ_CP040916.1\|WP_144002540.1\|2057034_2058024_+\|aldo/keto-reductase	gnl\|CDD\|223739	COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion].	5.4492e-102
NZ_CP040916.1\|WP_144002527.1\|2042421_2043744_+\|amidohydrolase-family-protein	gnl\|CDD\|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	7.45389e-161
NZ_CP040916.1\|WP_144002534.1\|2050164_2051394_-\|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase	gnl\|CDD\|183518	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.	0
NZ_CP040916.1\|WP_144002526.1\|2041583_2042384_+\|nucleoside-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	2.74298e-75
NZ_CP040916.1\|WP_144002537.1\|2053747_2054746_+\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	3.71376e-164

>NZ_CP040916.1|WP_144002532.1|2047512_2049267_+|S8-family-serine-peptidase
MTDQVRQGGDPGGSGPGPDGAGFTYRATEQELIVVARPEARLRAQEHGVRSATGADVSALNMFLTDEQLTLEPLFGNEDRIQAAAAGTVDDVPDLTLFYRVRGGADRAPELRARMSALPGIDTAYVKPGAVPATLGAIGRPGGDSEPGEGRRRKEGAPVTPDFTGRQGYLRPAPEGVDAQWAWQRLGGGGDGVTVIDIEGAWQLSHEDLSAKLAGVVIGTPVQDLSWRNHGTAVIGVMGGDRNSFGVTGIVPDAVTAAASFLPSGTAATIHAAADRLAPGDVILIELHRPGPRFDFEDRDDQRGYIALEWWPDDYAAIRHATAKGVIVVGAAGNGAESLDDAQYERRPDEFPSWWRNPFNPSNPSSDAVLVGAGAPPPGTHGRDHGPDRSRLAFSNYGARVDAQGWGRETTTTGGFWNQPGDLQGGVEEIAWYTDTFSGTSSASPIVVGAVVSLQGILKAAGQQPMTSARARAVLRATGSPQQDAPGRPASQRIGNRPDIKAAVAKLLPSAVGSGRAERYWDELLPYPPELPPRLRLFVAGEWRNLNHPTPEIRQAVHSAFAGGSPDVRVWFSDDEVVGLVVTG
>NZ_CP040916.1|WP_144002531.1|2046058_2047234_+|hypothetical-protein
MIELEGVPELIDPVMVAAFEGWNDAGDAASTAVAHLDKEWKGEVFAALDAEDYYDFQVNRPTVWLDGGVRKITWPTTRLSVVRVGGDKPRDLVLVRGIEPSMRWRSFCNELLGFAHELGVELVVIMGALLGDTPHTRPVPVSGVTSDPDLARTMDLEETKYEGPTGIVGILQEACTHAGVPAVSLWAAVPHYVSQPPNPKATLALLNRLEDLIDLRIPLGELTEDARAWQLGVDQLAAEDSEVAEYVQSLEEARDTAELPEASGEAIAREFERYLRRRDGGGPGQVGGVASEGEGAAYLRDAPSERTRPPKPQPRPDTGAESGTGTGTGTGTGSTARPAADDKAEGKPDKPDKAEDKTDKPDPASTDDPGTAPSDEPGTPPDAEPGDSSED
>NZ_CP040916.1|WP_144002530.1|2045228_2045900_+|FCD-domain-containing-protein
MAVTDEAIEKIKGMIVSGALRPGDRLPKESELAAELGLSRNSLREAVRALSLIRILDVRQGDGTYVTSLDPQLLLEALSFVVDFHRDDTVLEFLAVRRILEPAATAMAAARISEAELDTLTEQLDALGAAPSVEELVACDLEFHRGIVQSSGNSVLCSLLDGLSGPTTRARVWRGLTQEDAVSRTLREHRAILGALRDRDAEAARSWATVHIASVEQWLRSTL
>NZ_CP040916.1|WP_144002529.1|2044362_2045115_+|oxidoreductase
MTDTSTGAFVPPTAFAVPGRIAVSEQAAAHWQQALITGIRRETHAAATFRLKVPEWQGHLPGQHLMLRLTAADGYVAQRHYSLASAPDDSGEIELTVDHVPGGEVSGHLHTVAREGDTVEVRGPLSGFFAWPGDRPALLLGAGSGVVPLMSMIRHHRRAGLAVPLRLLVSARTREDLIYADEYGDETDVILTRSEGRLRAGHLAPLLGDGRPDGGWEAYICGSNGFAEHASRLLVDGGQPVDRIRIERFG
>NZ_CP040916.1|WP_144002528.1|2043740_2044370_+|molybdopterin-dependent-oxidoreductase
MTSPPPAPTRGFTGRARAADRDPQLPPGQYDARDTWPVLSAEVTPDLAAADWTFRVGGLVACPRTWTWDEAHALPASEYRGDIHCVTSWSKFGVRFGGVSLDAFLAGAGGPLPAATHVVAYSHTGYTANLPLADVTGGRAWIAWEYDGAPLPPEHGGPARLVVPHLYFWKSAKWIAGLELLDHDEPGFWEKNGYHHRGDPWREERYAGD
>NZ_CP040916.1|WP_144002527.1|2042421_2043744_+|amidohydrolase-family-protein
MLPIDLLVHGGDVLTVDASGTVVSDGAVAVRAGEIVAVGPAERLRAQYAAAEEIDARGCLVLPGLVNTHTHLAMTLLRGTADDVTLQDFLERVVPREAELLTPETVAVGLRAAIAESVRGGVTTALDMYWFHEAADEVAREAGWRLLTGPTFMDVPGPPDGRPYAERLGWAGAHLAARTPAPGTRPVLFAHSAYTLAPDQLAAITALARAHGALLHLHAAENAAEVAMVRERYGMRPVELLDSLGVLGPDTLLAHAVELTDAEIAALARTGTAVAHCPASNLKLGCGIARVPDLLEAGVTVGIGTDGAVSSNTLDVLGAVRLAALVHKAGGDPTAVGAEQAVRMATIESARALGLGDALGSLEPGKRADLIVVGLDRPHLAPRHDPYTTLAYAAAAVDVRDTVVDGRVLMRDRALLTLDEPHALRALNDAVAPTEPARLS
>NZ_CP040916.1|WP_144002526.1|2041583_2042384_+|nucleoside-phosphorylase
MTVSPASPASSAPLPITGVPRTGLPPYAVVVGDPARAAAVAEFLDDAKEVSYRREYRTFTGSWRELPVVVSSHGVGAPGALLLFQELAQAGVTHFIRLGTAGAIRRGIADGDLVIADAAVRDDGVTGQLIPAEYPAFGAPEAVLALQRTARAAGAPHHRGVVWTRAAFQPGFVPLPAEAYERAGVAAIEMELSALYVFASTRGLVAGGALVVDGANADELVDEEATGGYDPHRSVVADGVARGARITLDALRLLAADVPAQAGETR
>NZ_CP040916.1|WP_144002525.1|2040317_2041361_-|S-methyl-5-thioribose-1-phosphate-isomerase
MSQASNEELRAVVWRDTARGPGLALIDQTALPHALRRLDVHTVDQLVDAIVRLVVRGAPAIGAAGAYGVALALVQGEREGWDRARLDAEVARVRAARPTAVNLMTCVDRVAARLDEGLGAVLAEADAVVEEDLAANHAMGRHGADWLLDRLGRDRPLRVLTHCNTGALATAGWGTALGVIRELHRRDRLDTVYADETRPLLQGARLTAWELARAGIPHYVQADAAAAGVILRGEVDAAVVGADRIAANGDTANKVGTVGIALACAHAGIPFVVAAPTTTVDLATASGADIPIELRAADEVLEWAGVRTAPADSRGHNPAFDVTPGTLVTALVTERGVREVAKGELPL
>NZ_CP040916.1|WP_144323394.1|2039693_2040290_+|methylthioribulose-1-phosphate-dehydratase
MDLGSGLAEAGAVLAAEAARFASFGWMRGTSGNLSVVVSRDPVRLAVTASGLDKGELTAADVVLTDADGAAVGAGRPSAEAALHARVVRLTGAGAVVHVHTVASVAMGRRRPEGIEFRDLEMLKGLGHKTHEVAVVLPVIENSQDMAELGDRLEAALRPGMPAVVVAGHGLYVWGDDPRQARHHAEVVEWLLELALAG
>NZ_CP040916.1|WP_144002524.1|2038926_2039649_+|acireductone-synthase
MSADFGSGAVDAVVLDIEGTTSATGFVVDVMYPYARERFGALLGERSHEAVVARAVAQVREEIGEPDADAVRIEKVLGAWIDEDRKATPLKALQGVVWAEGFARGDLVAPFFDDVVPRLRSWYAAGLRLYVYSSGSVAAQRAWFTHSAHGPLTDLVSGWYDTENAGPKQDPGSYRAITGALGVPPGRTVFLSDRLGELNAAREAGWRTVGVRRAGEPYFADGVGGHPEVGSFDEVGLVTS
>NZ_CP040916.1|WP_144002534.1|2050164_2051394_-|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase
MYAWPASEVPALPGKGRDLRIHDTATGELVTLEPGPVARLYVCGITPYDATHMGHAATYNAFDLVQRVWLDTKRQVHYVQNVTDVDDPLLERANRDGKDWVELAQAETALFREDMTALRLLPPQHYIGAVESIPGIVPLVERLRDQGAAYELDGDVYFSVEADPHFGEVSGLDAAAMRLLSAERGGDPDRPGKKNPLDPMLWMAAREGEPSWDGASLGRGRPGWHIECVAIALDHLGMGFDVQGGGSDLIFPHHEMGASHAQALTGEHPFAKAYVHAGMVALDGAKMSKSKGNLVFVSKLRYDGVDPVAIRLALLAHHYRADWEWTDQVLQDAVERLARWRAAVSRPDGPSAEHLVEELREALANDLDAPAALAAVDRWAARQDTEGGADEGAPGVVSRAVDALLGVAL
>NZ_CP040916.1|WP_144002535.1|2051506_2052337_-|SCO1664-family-protein
MPAPERIPAGSLTATELLTRGELTVRGQIRQASNAVLYCSVAHDGASVPCVYKPVRGERPLWDFPDGTLAEREVAAYEVSEALGWGLVPPTVLRDGPYGEGMVQLWIDSPGEEADGGELLALVDGDEPGDGWKAVGFAEVGEGRTALLVHADDARLRRLAVLDAVINNADRKGGHLIAGAEERLYGIDHGVTFHVEDKLRTLLWGWAGEKLTDEAVDGLGALRDGLATGGALGSRLAELLTPAEVGATRARVDALLASGRHPTPSGEWPAIPWPPV
>NZ_CP040916.1|WP_030686241.1|2052300_2052891_-|DUF3090-domain-containing-protein
MSRQVFLYDPPERFVAGTVGLPGRRTFFLQASAGVRVTSVALEKTQVAALAERMEELLDEVVRRSGGSAAVPAVAPTEVADSAPLDSPVEEEFRVGTMALAWDGEAERMIVEAQALVELDADSDEDLAEAEERLLQDEENGPPMLRVRLTGAQARAFAKRALDVVNAGRPPCPLCSLPLDPEGHVCPRQNGYRRGA
>NZ_CP040916.1|WP_144002536.1|2052998_2053685_-|MSMEG_4193-family-putative-phosphomutase
MPTLILVRHGRSTANTAGLLAGWTPGVALDERGTHQAAALPGRLAALPLAEAVTSPLQRCQETLAPLRAARPDLTVHTDDRIGECHYGDWSGRKLAELGGEPLMEVVQQHPSAAAFPGGESLRAMQTRAAEAVREWNARVERDHGPDAVYLMCSHGDIIKSLVADAIGLHLDLFQRISVEPCSITAIRYTRLRPFLVRLGDTGDFASLAPRAEPAGQDAQVGGDTGAP
>NZ_CP040916.1|WP_144002537.1|2053747_2054746_+|magnesium/cobalt-transporter-CorA
MIVDCAIYQHGRRTEGPADFSDALDEARAAGDAFVWIGVHEPTEDEFDRVTEEFALHPLAVEDALKAHQRPKLEVYEDSLFMVLKPVVYEPESDTVSSGELMIFMGDSFVVTVRHGEGAPLGSVRHRLEAEPEVLKHGPTAVLYSIADAVVDHYLEVAEELQTDLEVLEAEVFSPDSGGSRNSASRIYRFKRQILEFRRATGPLAMPLGRLAGVGPPGRAVPYVNESAQPYLRDVSDHLTRVNESVEGLDRLVTDILSAHLAQMSVRQNDDMRKISAWAAMAAVPTMIAGVYGMNFEHMPELRWWWAYPAVILLMAALEVVLYRMFKRRGWL
>NZ_CP040916.1|WP_144002538.1|2054779_2055568_-|ferritin-like-domain-containing-protein
MLSAKSLFGEIVDNDESFRLFCSIAASGEAQGGWENGRIAALVPDSQRVLAPKITRHGADEDKHGRIFHALLKKRGLEPCEVPHDTDYTMLLERHGIGLAHDKLRSDEPLTEQDIITYLSHSRVTEQRAADQMVMLRKYFADHPEIGKAVKMISNDEDNHLAYCHEELLRFAYAGHGRAIQRILQETAHVEIRIYRDVSLAVMERMGRILGWTPTKARALAAGIHAMYAYERVGGWRKMVSLKMPERRDALGGPAASAPEFA
>NZ_CP040916.1|WP_144002539.1|2055789_2056845_-|LLM-class-F420-dependent-oxidoreductase
MQLGINLGYWGAGMDADNLTVAKEADKLGYAVCWAAEAYGSDAATVLSWVAAQTERIDVGSAIFQIPARQPAMTAMTAATLDSLSGGRFRLGLGVSGPQVSEGWYGVKFDKPLARTREYVEIVRRAMTRERLSYEGAHWTLPLPGGPGKPLKLTVHPQREHIPLYIAAIGPKNLEQTGEIADGALLIFPAAEHLEETALKHLRAGREKAGKTMEGFDVVPTLPLAVGEDSQVDALADMFRPYTALYVGGMGSRKQNFYNQLAGRMGYEKEAAEIQEKYLSGDKDGAAAAVPRSLIDSTSLLGSVDRIADRMRAYAAAGVTTLTLAPAGFTLEERLTALRAGTEALERAGAA
>NZ_CP040916.1|WP_144002540.1|2057034_2058024_+|aldo/keto-reductase
MEQRHLGRTGLRVSRIGLGTLTWGRPEETGENDAADLLKAFWEAGGTLVDTADVYGDGEAEYLLGRLVERLVPRRDLVIATKAGSVPDPDRRFDCSRGHLLSALDASLARLGTDYVDVWQVHAFDPETPLEETLQALDIAVASGRARYAGVSNFSGWQLAKAATWQLAAPGSRTRLASTQMEYSLLQRGIEREVLPAALDLGVGLLPSSPLGRGVLTGKYRHATPADSRGASEQFAPFVAPYLDDAASRVVDAVAIAADGLAVTPLHVALAWVRDRPGVAAPIVGARNAQQLTAALSVETLSLPDEICQALDDVSAPVHRYPDQDWSTL
>NZ_CP040916.1|WP_144002541.1|2058020_2060294_+|ATP-binding-domain-containing-protein
MSTESAAAEVAEPDAPKAAAEPEAEAAPEAEATPEDTAAPGEDAGADASGTDEGPEAAAGAEGTAEGGAGGEPSEAEAELAAQRELRQRIEERKAARTAPVDAGTKLQGTAADLLAAVRAVESGEKPVASAFREPEPVAPRRPAPEPVRRQGPEAPAAPAEPAREAVAAVATVLGEGGAPAALAARAAAALGEGADGQLRDDPWQLLRVPGVRPEQADGFARALLGDACGPGDERRGRALTVWLLEQAALAGHTALEAAALTAALGQRAVPDPDEAVQSALAEGDVLVFQDALDDTPRGAPTAAPADVRADGDAESDEEAAPPVRVLFGLERYALAEESLADGLARVINSLPKDDGSGPGAEAWESAASAASGSAAELIRAVAAHGLVLHTGGEAARAEPAALVAAARSLGLRVCAAAHTADGQRRLAETAGAEDEAGDATAVTVAGLLSGQQGPGRDADGALALDLLVVLDAPQLDVEAAAMLVESLPDGARLVLSGDPGVLWSAGPGRVFADVLAARACPQVVSRTPDPGPVGELVSGIGVGELTEVAAPHKEVVIVPVHDAADAIRRTVQLVADSVPRAIGVPSEHTQVITPGHGGAAGTRALNAALKERLNPGPGRFGGFDPGDRVAHAPVPGRTALGRVVRADAEGLHLECDGVPVVVAKERVEQSVRHAWAVTAHQAAGRRWPAAVVVLPGDAAAALTRPWVYAAFSRAERHLSVVQGVAQALPQAVAERLAKERTTRLRALLRPQLPEPA
>NZ_CP040916.1|WP_144002542.1|2060386_2061160_-|hypothetical-protein
MSDAAQPTAAEVRAAAEAVKTALDRHLAAVERRSGEDDPAVYEAFNELAAAAEAYDELLYDRYDEVTPFEIPGAEDSLPPYQGPAEPTALSVLIRRDYAVAEPQRLLAQAARVEAADEDATDDDRQAGTLPGAIGLLFGEFEPDEIASRHKEFGLEEGDSTLWVTALDEPAEAGEWLESPFDQTDPQRVVCRFDVSAVFDDEQDGLEDLEDLEDADDGPDPADPDLDGALGYDPDEVVSLDDVDDVEVVERERGEPA

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Crispr_ID: NZ_CP040916_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_1

2049376-2049538

Orphan

Consensus_repeat	Method
ACAGCAGCCCTTCGGCCAGCAGCA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP040916_1

>merge|NZ_CP040916|1|2049376-2049538|CRISPRCasFinder
TCAGCAGCCCTTCGGCTCGCAGCAGGACGGCCAACAGCAACCGTTCGGCCAGCAGCAGCCCGTCTCGCAGCAACAGCAGCCCTTCGGCCAGCAGCAGCCGTTCTCGCAACAGCAGCAGTACGGCCAACAGCAGCACGGACAGCAGCCCTTCGGCCAGCAGTAC

>NZ_CP040916|1|1|2049376-2049538|CRISPRCasFinder
TCAGCAGCCCTTCGGCTCGCAGCA	GGACGGCCAACAGCAACCGTTCGGCCA
GCAGCAGCCCGTCTCGCAGCAACA	GCAGCCCTTCGGCCA
GCAGCAGCCGTTCTCGCAACAGCA	GCAGTACGGCCAACAGCAGCACGG
ACAGCAGCCCTTCGGCCAGCAGTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144002532.1\|2047512_2049267_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173792
NZ_CP040916.1\|WP_144002525.1\|2040317_2041361_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP040916.1\|WP_144323394.1\|2039693_2040290_+\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|274521
NZ_CP040916.1\|WP_144002539.1\|2055789_2056845_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274647
NZ_CP040916.1\|WP_144002524.1\|2038926_2039649_+\|acireductone-synthase	unknown	unknown	gnl\|CDD\|319768
NZ_CP040916.1\|WP_144002530.1\|2045228_2045900_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225097
NZ_CP040916.1\|WP_144002535.1\|2051506_2052337_-\|SCO1664-family-protein	unknown	unknown	gnl\|CDD\|274813
NZ_CP040916.1\|WP_144002529.1\|2044362_2045115_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|99813
NZ_CP040916.1\|WP_144002531.1\|2046058_2047234_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378251
NZ_CP040916.1\|WP_144002541.1\|2058020_2060294_+\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273632
NZ_CP040916.1\|WP_144002542.1\|2060386_2061160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_030686241.1\|2052300_2052891_-\|DUF3090-domain-containing-protein	unknown	unknown	gnl\|CDD\|213872
NZ_CP040916.1\|WP_144002528.1\|2043740_2044370_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NZ_CP040916.1\|WP_144002536.1\|2052998_2053685_-\|MSMEG_4193-family-putative-phosphomutase	unknown	unknown	gnl\|CDD\|163560
NZ_CP040916.1\|WP_144002540.1\|2057034_2058024_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223739
NZ_CP040916.1\|WP_144002538.1\|2054779_2055568_-\|ferritin-like-domain-containing-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144002527.1\|2042421_2043744_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238623
NZ_CP040916.1\|WP_144002534.1\|2050164_2051394_-\|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase	unknown	unknown	gnl\|CDD\|183518
NZ_CP040916.1\|WP_144002526.1\|2041583_2042384_+\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_CP040916.1\|WP_144002537.1\|2053747_2054746_+\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213364

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144002532.1\|2047512_2049267_+\|S8-family-serine-peptidase	gnl\|CDD\|173792	cd04843, Peptidases_S8_11, Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.84598e-101
NZ_CP040916.1\|WP_144002525.1\|2040317_2041361_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	1.11988e-148
NZ_CP040916.1\|WP_144323394.1\|2039693_2040290_+\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|274521	TIGR03328, dehydratase-enolase-phosphatase_complex_1, methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine. [Amino acid biosynthesis, Aspartate family].	1.98909e-62
NZ_CP040916.1\|WP_144002539.1\|2055789_2056845_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274647	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis. [Unknown function, Enzymes of unknown specificity].	9.97929e-129
NZ_CP040916.1\|WP_144002524.1\|2038926_2039649_+\|acireductone-synthase	gnl\|CDD\|319768	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv. Oryzae enolase-phosphatase Xep. Enolase-phosphatase E1 (also called MASA) is a bifunctional enolase- phosphatase which promotes the conversion of 2,3-diketo-5-methylthio-1-phosphopentane to 1,2-dihydroxy-3-keto-5-methylthiopentene anion (an aci-reductone) in the methionine salvage pathway. The catalytic reaction is carried out continuously by enolization and dephosphorylation, and the enolase activity cannot be classified as typical enzymatic enolization. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.05321e-96
NZ_CP040916.1\|WP_144002530.1\|2045228_2045900_+\|FCD-domain-containing-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	8.94228e-48
NZ_CP040916.1\|WP_144002535.1\|2051506_2052337_-\|SCO1664-family-protein	gnl\|CDD\|274813	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.	1.76116e-125
NZ_CP040916.1\|WP_144002529.1\|2044362_2045115_+\|oxidoreductase	gnl\|CDD\|99813	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	6.27161e-85
NZ_CP040916.1\|WP_144002531.1\|2046058_2047234_+\|hypothetical-protein	gnl\|CDD\|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	1.07656e-50
NZ_CP040916.1\|WP_144002541.1\|2058020_2060294_+\|ATP-binding-domain-containing-protein	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	1.53473e-31
NZ_CP040916.1\|WP_030686241.1\|2052300_2052891_-\|DUF3090-domain-containing-protein	gnl\|CDD\|213872	TIGR03847, TIGR03847, conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.	4.59328e-85
NZ_CP040916.1\|WP_144002528.1\|2043740_2044370_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	2.6761e-94
NZ_CP040916.1\|WP_144002536.1\|2052998_2053685_-\|MSMEG_4193-family-putative-phosphomutase	gnl\|CDD\|163560	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.	3.7786e-113
NZ_CP040916.1\|WP_144002540.1\|2057034_2058024_+\|aldo/keto-reductase	gnl\|CDD\|223739	COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion].	5.4492e-102
NZ_CP040916.1\|WP_144002527.1\|2042421_2043744_+\|amidohydrolase-family-protein	gnl\|CDD\|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	7.45389e-161
NZ_CP040916.1\|WP_144002534.1\|2050164_2051394_-\|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase	gnl\|CDD\|183518	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.	0
NZ_CP040916.1\|WP_144002526.1\|2041583_2042384_+\|nucleoside-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	2.74298e-75
NZ_CP040916.1\|WP_144002537.1\|2053747_2054746_+\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	3.71376e-164

>NZ_CP040916.1|WP_144002532.1|2047512_2049267_+|S8-family-serine-peptidase
MTDQVRQGGDPGGSGPGPDGAGFTYRATEQELIVVARPEARLRAQEHGVRSATGADVSALNMFLTDEQLTLEPLFGNEDRIQAAAAGTVDDVPDLTLFYRVRGGADRAPELRARMSALPGIDTAYVKPGAVPATLGAIGRPGGDSEPGEGRRRKEGAPVTPDFTGRQGYLRPAPEGVDAQWAWQRLGGGGDGVTVIDIEGAWQLSHEDLSAKLAGVVIGTPVQDLSWRNHGTAVIGVMGGDRNSFGVTGIVPDAVTAAASFLPSGTAATIHAAADRLAPGDVILIELHRPGPRFDFEDRDDQRGYIALEWWPDDYAAIRHATAKGVIVVGAAGNGAESLDDAQYERRPDEFPSWWRNPFNPSNPSSDAVLVGAGAPPPGTHGRDHGPDRSRLAFSNYGARVDAQGWGRETTTTGGFWNQPGDLQGGVEEIAWYTDTFSGTSSASPIVVGAVVSLQGILKAAGQQPMTSARARAVLRATGSPQQDAPGRPASQRIGNRPDIKAAVAKLLPSAVGSGRAERYWDELLPYPPELPPRLRLFVAGEWRNLNHPTPEIRQAVHSAFAGGSPDVRVWFSDDEVVGLVVTG
>NZ_CP040916.1|WP_144002531.1|2046058_2047234_+|hypothetical-protein
MIELEGVPELIDPVMVAAFEGWNDAGDAASTAVAHLDKEWKGEVFAALDAEDYYDFQVNRPTVWLDGGVRKITWPTTRLSVVRVGGDKPRDLVLVRGIEPSMRWRSFCNELLGFAHELGVELVVIMGALLGDTPHTRPVPVSGVTSDPDLARTMDLEETKYEGPTGIVGILQEACTHAGVPAVSLWAAVPHYVSQPPNPKATLALLNRLEDLIDLRIPLGELTEDARAWQLGVDQLAAEDSEVAEYVQSLEEARDTAELPEASGEAIAREFERYLRRRDGGGPGQVGGVASEGEGAAYLRDAPSERTRPPKPQPRPDTGAESGTGTGTGTGTGSTARPAADDKAEGKPDKPDKAEDKTDKPDPASTDDPGTAPSDEPGTPPDAEPGDSSED
>NZ_CP040916.1|WP_144002530.1|2045228_2045900_+|FCD-domain-containing-protein
MAVTDEAIEKIKGMIVSGALRPGDRLPKESELAAELGLSRNSLREAVRALSLIRILDVRQGDGTYVTSLDPQLLLEALSFVVDFHRDDTVLEFLAVRRILEPAATAMAAARISEAELDTLTEQLDALGAAPSVEELVACDLEFHRGIVQSSGNSVLCSLLDGLSGPTTRARVWRGLTQEDAVSRTLREHRAILGALRDRDAEAARSWATVHIASVEQWLRSTL
>NZ_CP040916.1|WP_144002529.1|2044362_2045115_+|oxidoreductase
MTDTSTGAFVPPTAFAVPGRIAVSEQAAAHWQQALITGIRRETHAAATFRLKVPEWQGHLPGQHLMLRLTAADGYVAQRHYSLASAPDDSGEIELTVDHVPGGEVSGHLHTVAREGDTVEVRGPLSGFFAWPGDRPALLLGAGSGVVPLMSMIRHHRRAGLAVPLRLLVSARTREDLIYADEYGDETDVILTRSEGRLRAGHLAPLLGDGRPDGGWEAYICGSNGFAEHASRLLVDGGQPVDRIRIERFG
>NZ_CP040916.1|WP_144002528.1|2043740_2044370_+|molybdopterin-dependent-oxidoreductase
MTSPPPAPTRGFTGRARAADRDPQLPPGQYDARDTWPVLSAEVTPDLAAADWTFRVGGLVACPRTWTWDEAHALPASEYRGDIHCVTSWSKFGVRFGGVSLDAFLAGAGGPLPAATHVVAYSHTGYTANLPLADVTGGRAWIAWEYDGAPLPPEHGGPARLVVPHLYFWKSAKWIAGLELLDHDEPGFWEKNGYHHRGDPWREERYAGD
>NZ_CP040916.1|WP_144002527.1|2042421_2043744_+|amidohydrolase-family-protein
MLPIDLLVHGGDVLTVDASGTVVSDGAVAVRAGEIVAVGPAERLRAQYAAAEEIDARGCLVLPGLVNTHTHLAMTLLRGTADDVTLQDFLERVVPREAELLTPETVAVGLRAAIAESVRGGVTTALDMYWFHEAADEVAREAGWRLLTGPTFMDVPGPPDGRPYAERLGWAGAHLAARTPAPGTRPVLFAHSAYTLAPDQLAAITALARAHGALLHLHAAENAAEVAMVRERYGMRPVELLDSLGVLGPDTLLAHAVELTDAEIAALARTGTAVAHCPASNLKLGCGIARVPDLLEAGVTVGIGTDGAVSSNTLDVLGAVRLAALVHKAGGDPTAVGAEQAVRMATIESARALGLGDALGSLEPGKRADLIVVGLDRPHLAPRHDPYTTLAYAAAAVDVRDTVVDGRVLMRDRALLTLDEPHALRALNDAVAPTEPARLS
>NZ_CP040916.1|WP_144002526.1|2041583_2042384_+|nucleoside-phosphorylase
MTVSPASPASSAPLPITGVPRTGLPPYAVVVGDPARAAAVAEFLDDAKEVSYRREYRTFTGSWRELPVVVSSHGVGAPGALLLFQELAQAGVTHFIRLGTAGAIRRGIADGDLVIADAAVRDDGVTGQLIPAEYPAFGAPEAVLALQRTARAAGAPHHRGVVWTRAAFQPGFVPLPAEAYERAGVAAIEMELSALYVFASTRGLVAGGALVVDGANADELVDEEATGGYDPHRSVVADGVARGARITLDALRLLAADVPAQAGETR
>NZ_CP040916.1|WP_144002525.1|2040317_2041361_-|S-methyl-5-thioribose-1-phosphate-isomerase
MSQASNEELRAVVWRDTARGPGLALIDQTALPHALRRLDVHTVDQLVDAIVRLVVRGAPAIGAAGAYGVALALVQGEREGWDRARLDAEVARVRAARPTAVNLMTCVDRVAARLDEGLGAVLAEADAVVEEDLAANHAMGRHGADWLLDRLGRDRPLRVLTHCNTGALATAGWGTALGVIRELHRRDRLDTVYADETRPLLQGARLTAWELARAGIPHYVQADAAAAGVILRGEVDAAVVGADRIAANGDTANKVGTVGIALACAHAGIPFVVAAPTTTVDLATASGADIPIELRAADEVLEWAGVRTAPADSRGHNPAFDVTPGTLVTALVTERGVREVAKGELPL
>NZ_CP040916.1|WP_144323394.1|2039693_2040290_+|methylthioribulose-1-phosphate-dehydratase
MDLGSGLAEAGAVLAAEAARFASFGWMRGTSGNLSVVVSRDPVRLAVTASGLDKGELTAADVVLTDADGAAVGAGRPSAEAALHARVVRLTGAGAVVHVHTVASVAMGRRRPEGIEFRDLEMLKGLGHKTHEVAVVLPVIENSQDMAELGDRLEAALRPGMPAVVVAGHGLYVWGDDPRQARHHAEVVEWLLELALAG
>NZ_CP040916.1|WP_144002524.1|2038926_2039649_+|acireductone-synthase
MSADFGSGAVDAVVLDIEGTTSATGFVVDVMYPYARERFGALLGERSHEAVVARAVAQVREEIGEPDADAVRIEKVLGAWIDEDRKATPLKALQGVVWAEGFARGDLVAPFFDDVVPRLRSWYAAGLRLYVYSSGSVAAQRAWFTHSAHGPLTDLVSGWYDTENAGPKQDPGSYRAITGALGVPPGRTVFLSDRLGELNAAREAGWRTVGVRRAGEPYFADGVGGHPEVGSFDEVGLVTS
>NZ_CP040916.1|WP_144002534.1|2050164_2051394_-|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase
MYAWPASEVPALPGKGRDLRIHDTATGELVTLEPGPVARLYVCGITPYDATHMGHAATYNAFDLVQRVWLDTKRQVHYVQNVTDVDDPLLERANRDGKDWVELAQAETALFREDMTALRLLPPQHYIGAVESIPGIVPLVERLRDQGAAYELDGDVYFSVEADPHFGEVSGLDAAAMRLLSAERGGDPDRPGKKNPLDPMLWMAAREGEPSWDGASLGRGRPGWHIECVAIALDHLGMGFDVQGGGSDLIFPHHEMGASHAQALTGEHPFAKAYVHAGMVALDGAKMSKSKGNLVFVSKLRYDGVDPVAIRLALLAHHYRADWEWTDQVLQDAVERLARWRAAVSRPDGPSAEHLVEELREALANDLDAPAALAAVDRWAARQDTEGGADEGAPGVVSRAVDALLGVAL
>NZ_CP040916.1|WP_144002535.1|2051506_2052337_-|SCO1664-family-protein
MPAPERIPAGSLTATELLTRGELTVRGQIRQASNAVLYCSVAHDGASVPCVYKPVRGERPLWDFPDGTLAEREVAAYEVSEALGWGLVPPTVLRDGPYGEGMVQLWIDSPGEEADGGELLALVDGDEPGDGWKAVGFAEVGEGRTALLVHADDARLRRLAVLDAVINNADRKGGHLIAGAEERLYGIDHGVTFHVEDKLRTLLWGWAGEKLTDEAVDGLGALRDGLATGGALGSRLAELLTPAEVGATRARVDALLASGRHPTPSGEWPAIPWPPV
>NZ_CP040916.1|WP_030686241.1|2052300_2052891_-|DUF3090-domain-containing-protein
MSRQVFLYDPPERFVAGTVGLPGRRTFFLQASAGVRVTSVALEKTQVAALAERMEELLDEVVRRSGGSAAVPAVAPTEVADSAPLDSPVEEEFRVGTMALAWDGEAERMIVEAQALVELDADSDEDLAEAEERLLQDEENGPPMLRVRLTGAQARAFAKRALDVVNAGRPPCPLCSLPLDPEGHVCPRQNGYRRGA
>NZ_CP040916.1|WP_144002536.1|2052998_2053685_-|MSMEG_4193-family-putative-phosphomutase
MPTLILVRHGRSTANTAGLLAGWTPGVALDERGTHQAAALPGRLAALPLAEAVTSPLQRCQETLAPLRAARPDLTVHTDDRIGECHYGDWSGRKLAELGGEPLMEVVQQHPSAAAFPGGESLRAMQTRAAEAVREWNARVERDHGPDAVYLMCSHGDIIKSLVADAIGLHLDLFQRISVEPCSITAIRYTRLRPFLVRLGDTGDFASLAPRAEPAGQDAQVGGDTGAP
>NZ_CP040916.1|WP_144002537.1|2053747_2054746_+|magnesium/cobalt-transporter-CorA
MIVDCAIYQHGRRTEGPADFSDALDEARAAGDAFVWIGVHEPTEDEFDRVTEEFALHPLAVEDALKAHQRPKLEVYEDSLFMVLKPVVYEPESDTVSSGELMIFMGDSFVVTVRHGEGAPLGSVRHRLEAEPEVLKHGPTAVLYSIADAVVDHYLEVAEELQTDLEVLEAEVFSPDSGGSRNSASRIYRFKRQILEFRRATGPLAMPLGRLAGVGPPGRAVPYVNESAQPYLRDVSDHLTRVNESVEGLDRLVTDILSAHLAQMSVRQNDDMRKISAWAAMAAVPTMIAGVYGMNFEHMPELRWWWAYPAVILLMAALEVVLYRMFKRRGWL
>NZ_CP040916.1|WP_144002538.1|2054779_2055568_-|ferritin-like-domain-containing-protein
MLSAKSLFGEIVDNDESFRLFCSIAASGEAQGGWENGRIAALVPDSQRVLAPKITRHGADEDKHGRIFHALLKKRGLEPCEVPHDTDYTMLLERHGIGLAHDKLRSDEPLTEQDIITYLSHSRVTEQRAADQMVMLRKYFADHPEIGKAVKMISNDEDNHLAYCHEELLRFAYAGHGRAIQRILQETAHVEIRIYRDVSLAVMERMGRILGWTPTKARALAAGIHAMYAYERVGGWRKMVSLKMPERRDALGGPAASAPEFA
>NZ_CP040916.1|WP_144002539.1|2055789_2056845_-|LLM-class-F420-dependent-oxidoreductase
MQLGINLGYWGAGMDADNLTVAKEADKLGYAVCWAAEAYGSDAATVLSWVAAQTERIDVGSAIFQIPARQPAMTAMTAATLDSLSGGRFRLGLGVSGPQVSEGWYGVKFDKPLARTREYVEIVRRAMTRERLSYEGAHWTLPLPGGPGKPLKLTVHPQREHIPLYIAAIGPKNLEQTGEIADGALLIFPAAEHLEETALKHLRAGREKAGKTMEGFDVVPTLPLAVGEDSQVDALADMFRPYTALYVGGMGSRKQNFYNQLAGRMGYEKEAAEIQEKYLSGDKDGAAAAVPRSLIDSTSLLGSVDRIADRMRAYAAAGVTTLTLAPAGFTLEERLTALRAGTEALERAGAA
>NZ_CP040916.1|WP_144002540.1|2057034_2058024_+|aldo/keto-reductase
MEQRHLGRTGLRVSRIGLGTLTWGRPEETGENDAADLLKAFWEAGGTLVDTADVYGDGEAEYLLGRLVERLVPRRDLVIATKAGSVPDPDRRFDCSRGHLLSALDASLARLGTDYVDVWQVHAFDPETPLEETLQALDIAVASGRARYAGVSNFSGWQLAKAATWQLAAPGSRTRLASTQMEYSLLQRGIEREVLPAALDLGVGLLPSSPLGRGVLTGKYRHATPADSRGASEQFAPFVAPYLDDAASRVVDAVAIAADGLAVTPLHVALAWVRDRPGVAAPIVGARNAQQLTAALSVETLSLPDEICQALDDVSAPVHRYPDQDWSTL
>NZ_CP040916.1|WP_144002541.1|2058020_2060294_+|ATP-binding-domain-containing-protein
MSTESAAAEVAEPDAPKAAAEPEAEAAPEAEATPEDTAAPGEDAGADASGTDEGPEAAAGAEGTAEGGAGGEPSEAEAELAAQRELRQRIEERKAARTAPVDAGTKLQGTAADLLAAVRAVESGEKPVASAFREPEPVAPRRPAPEPVRRQGPEAPAAPAEPAREAVAAVATVLGEGGAPAALAARAAAALGEGADGQLRDDPWQLLRVPGVRPEQADGFARALLGDACGPGDERRGRALTVWLLEQAALAGHTALEAAALTAALGQRAVPDPDEAVQSALAEGDVLVFQDALDDTPRGAPTAAPADVRADGDAESDEEAAPPVRVLFGLERYALAEESLADGLARVINSLPKDDGSGPGAEAWESAASAASGSAAELIRAVAAHGLVLHTGGEAARAEPAALVAAARSLGLRVCAAAHTADGQRRLAETAGAEDEAGDATAVTVAGLLSGQQGPGRDADGALALDLLVVLDAPQLDVEAAAMLVESLPDGARLVLSGDPGVLWSAGPGRVFADVLAARACPQVVSRTPDPGPVGELVSGIGVGELTEVAAPHKEVVIVPVHDAADAIRRTVQLVADSVPRAIGVPSEHTQVITPGHGGAAGTRALNAALKERLNPGPGRFGGFDPGDRVAHAPVPGRTALGRVVRADAEGLHLECDGVPVVVAKERVEQSVRHAWAVTAHQAAGRRWPAAVVVLPGDAAAALTRPWVYAAFSRAERHLSVVQGVAQALPQAVAERLAKERTTRLRALLRPQLPEPA
>NZ_CP040916.1|WP_144002542.1|2060386_2061160_-|hypothetical-protein
MSDAAQPTAAEVRAAAEAVKTALDRHLAAVERRSGEDDPAVYEAFNELAAAAEAYDELLYDRYDEVTPFEIPGAEDSLPPYQGPAEPTALSVLIRRDYAVAEPQRLLAQAARVEAADEDATDDDRQAGTLPGAIGLLFGEFEPDEIASRHKEFGLEEGDSTLWVTALDEPAEAGEWLESPFDQTDPQRVVCRFDVSAVFDDEQDGLEDLEDLEDADDGPDPADPDLDGALGYDPDEVVSLDDVDDVEVVERERGEPA

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Crispr_ID: NZ_CP040916_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_3

2734288-2734367

Orphan

Consensus_repeat	Method
AAGAGCAGCTACAGCACCGACGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_3

>merge|NZ_CP040916|3|2734288-2734367|CRISPRCasFinder
AAGAGCAGCTACAGCACCGACGACGGGCCGGACTGCGTGGAAGTGGCCTGGAAGAAGAGCAGCCACAGCACCGACGACGG

>NZ_CP040916|3|3|2734288-2734367|CRISPRCasFinder
AAGAGCAGCTACAGCACCGACGACGG	GCCGGACTGCGTGGAAGTGGCCTGGAAG
AAGAGCAGCCACAGCACCGACGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144003068.1\|2743407_2744385_-\|asparaginase	unknown	unknown	gnl\|CDD\|199208
NZ_CP040916.1\|WP_144003065.1\|2740707_2741154_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319943
NZ_CP040916.1\|WP_144003056.1\|2730688_2731294_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP040916.1\|WP_144003061.1\|2735534_2736737_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP040916.1\|WP_144003052.1\|2726553_2727273_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP040916.1\|WP_144003053.1\|2727350_2728397_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197318
NZ_CP040916.1\|WP_144003063.1\|2737470_2738286_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP040916.1\|WP_144003055.1\|2729538_2730501_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP040916.1\|WP_144003066.1\|2741159_2742032_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378964
NZ_CP040916.1\|WP_144003058.1\|2731940_2732552_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|334719
NZ_CP040916.1\|WP_144003062.1\|2736909_2737338_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP040916.1\|WP_144003059.1\|2732706_2734128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378820
NZ_CP040916.1\|WP_144003051.1\|2724575_2725241_+\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP040916.1\|WP_144003067.1\|2742253_2743411_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|378932
NZ_CP040916.1\|WP_144003069.1\|2744472_2745813_-\|DUF2252-family-protein	unknown	unknown	gnl\|CDD\|313268
NZ_CP040916.1\|WP_144003054.1\|2728393_2729347_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP040916.1\|WP_144003064.1\|2738282_2739347_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|163581
NZ_CP040916.1\|WP_144003057.1\|2731317_2731878_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP040916.1\|WP_144323454.1\|2739343_2740423_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_CP040916.1\|WP_144323453.1\|2725265_2726447_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144003068.1\|2743407_2744385_-\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	7.09554e-100
NZ_CP040916.1\|WP_144003065.1\|2740707_2741154_-\|glyoxalase	gnl\|CDD\|319943	cd08355, TioX_like, Micromonospora sp. TioX and similar proteins. Micromonospora sp. TioX is encoded by a gene of the thiocoraline biosynthetic gene cluster. Thiocoraline is a thiodepsipeptide with potent antitumor activity. TioX may be involved in thiocoraline resistance or secretion. TioX belongs to vicinal oxygen chelate (VOC) superfamily that is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.61435e-29
NZ_CP040916.1\|WP_144003056.1\|2730688_2731294_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.66932e-14
NZ_CP040916.1\|WP_144003061.1\|2735534_2736737_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	6.69635e-64
NZ_CP040916.1\|WP_144003052.1\|2726553_2727273_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.05951e-73
NZ_CP040916.1\|WP_144003053.1\|2727350_2728397_-\|hypothetical-protein	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	4.69278e-35
NZ_CP040916.1\|WP_144003063.1\|2737470_2738286_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.17073e-102
NZ_CP040916.1\|WP_144003055.1\|2729538_2730501_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.06295e-30
NZ_CP040916.1\|WP_144003066.1\|2741159_2742032_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	2.57044e-18
NZ_CP040916.1\|WP_144003058.1\|2731940_2732552_+\|dihydrofolate-reductase	gnl\|CDD\|334719	pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C-terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.	4.97135e-19
NZ_CP040916.1\|WP_144003062.1\|2736909_2737338_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	3.28229e-33
NZ_CP040916.1\|WP_144003059.1\|2732706_2734128_+\|hypothetical-protein	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	0.000265575
NZ_CP040916.1\|WP_144003051.1\|2724575_2725241_+\|DUF218-domain-containing-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	6.46922e-28
NZ_CP040916.1\|WP_144003067.1\|2742253_2743411_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|378932	pfam12710, HAD, haloacid dehalogenase-like hydrolase.	9.07662e-05
NZ_CP040916.1\|WP_144003069.1\|2744472_2745813_-\|DUF2252-family-protein	gnl\|CDD\|313268	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.	4.86157e-164
NZ_CP040916.1\|WP_144003054.1\|2728393_2729347_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.14444e-40
NZ_CP040916.1\|WP_144003064.1\|2738282_2739347_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|163581	TIGR03869, transport_system_permease_protein, proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.	3.65419e-91
NZ_CP040916.1\|WP_144003057.1\|2731317_2731878_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	4.98051e-25
NZ_CP040916.1\|WP_144323454.1\|2739343_2740423_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.26544e-94
NZ_CP040916.1\|WP_144323453.1\|2725265_2726447_-\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.40387e-34

>NZ_CP040916.1|WP_144003059.1|2732706_2734128_+|hypothetical-protein
MRRRGGSVVVSAALVVGSVVGTGTAAAAEAADTTSERRSYTGQIDGAKYRVEVPEHWNGTLLLYSHGYYPAGWAPEKIALTNSEEAEDALLGKGYALAASDYKGTHGYAVADALTDQIALQDWFAENVGRPRRTLSTGQSMGGTVATLLGERHPGRFDGVLSMCAEYDGNGTWSTTLDMTYALKTLLVPEADQDIDLVRPRDPERSVAVLVAAIDRALETERGRARLALAGALGNIPGWYSAHQAQPVKAADRVRAQAQWLRNAYVAGTGPLGRVDLERRAGGNPSSNVGVDYRRQLAGSARKDLVRKAYRAAGPTGADLAADVAKLNSGARITADPKAVDYMKRYTIARGTTPRPVVTLHNTQDGGAVSDQAGWYADQVRRNGRPGNLRQLYVNRGSHCAFSAADEITALETLVTKADSGHWPRTDPRVLNRAIGRYQPELQQVLDLATFQKKTMPPAFARFTPARFPRPSR
>NZ_CP040916.1|WP_144003058.1|2731940_2732552_+|dihydrofolate-reductase
MRITIGEFISLDGVVQAPGHPDEDGDGGFAHGGWSHPFFDPEVMGSALADWSKGTEAMLYGRRTWQVMAAAWPGRAGDPFADHMNSVAKYVVSDTLGEDDVTAWNNSTLIPGDGAVERIKELRAREGGDLTVLGSASLSRTLLAEGLVDELRLMIMPVLLGGGKSIYPTDGALRSFELVSTVTSGTGVHVCTYRPKAPEATAA
>NZ_CP040916.1|WP_144003057.1|2731317_2731878_+|dihydrofolate-reductase
MRKLKLQVQVSADGYMAGPDDAMDWLTFPWTEDLTAHIAELTEPVDTIVLGRRLAEGFIPTWAARPEHETQEAIDKMNDTPKVVISDSLTESPWDNTTVVGGDLAEAVGKLKEQPGGDLIVYGGATLVADLLARELIDDIHLFVNPTAIGTGKPVFGPDAHRTLRLVTARAFDCGIAALHYEPRHA
>NZ_CP040916.1|WP_144003056.1|2730688_2731294_+|dihydrofolate-reductase
MSEVVVLMHVSLDGAVADPSWGRPFRYDGHEKYQLGQVAASRALLLGRVTFQEMAAAWPRRDATEEYTGLVDAMPKYVVSTTLEHVAWNGVLIPGQTAEHIAKLRGEPGQDLLVLGGAELVGHLLRLRLVDVLKLCVHPEIAGTGRRLFPESGAPGTWTLTGTSVFASGAVVLEYRAQAPAPVPTVPRHARATPANPPPHP
>NZ_CP040916.1|WP_144003055.1|2729538_2730501_-|LysR-family-transcriptional-regulator
MLERLELEAFLTLAEELHFGRTAERLHVTTGRISQTIQKLERRIGAPLFERNSRKVTLTDVGRQLRDDLLPAYEQISAGLAQAIAVGRGVRVKGVVRVGWSAPWCGNLMVQAADRFRVRYPDCDVELLEVQLCDPLGGMRAGTVDLQLTEFPVREPDITTGSLVFAEPRALMVPSGHPFARRDSVSMEDLADTTLVTLNDAQIPRYWMDRYYPRATPTGRKIPQGPAVTFWPEALVHIANGVGVSTVSLRAAAFHQRPGMVFVPFRDAPPIEYGLMWPTAGKNPLTGPFLEVVDEITRPSDRSLHAPERSPEDAPDRRLG
>NZ_CP040916.1|WP_144003054.1|2728393_2729347_-|D-alanyl-D-alanine-carboxypeptidase
MRGVGAACGGTALLAVVGVGGWFGFPGSEDGEAPRPRGAAAIAERLDLPWPREGQTSIAVEGVGSLGSTGGREPVPIASVTKVMTAYVILKEHPLAAGEQGPRITVDATAAEESHSLSESTAPLREGRRPTQRQLLELLLLPSGNNVARLLARWDAGSEKAFVVKMNRTAARLGMDRTTYTGASGIEASTRSTADDQLELARQAMKQPVLRAVVALRSTTVPGVPGTVTNTNRLLDEPGVIGLKTGSSTPAGGNLMWAAEVTSGARRHLVLGVVLGQRARTTPTEGLDAALERSGALIAAVRTGLFAALRDGERVRT
>NZ_CP040916.1|WP_144003053.1|2727350_2728397_-|hypothetical-protein
MTLLPERAHSRAELSEGADGQVALTDGADGQVALTDGADGPAGSWRRPGWIVAALAVLVALLLLGHSLVPNALGNSGSLLETFLPWLGVSVPVLLGAALLRRSVVACAAVAVTAVVWCSLFAGTLLDKSSSGGDLSVVSHNVHDGNPDPGRTARDLAASGADVIALQELTARTAPAYERTLAATYPHHAVRESVGLWSKRPLRDVEPLAIMPWTRALRATVDTPKGPLAVYVAHLASIRVHPSSGFATEKRNEAAARLAGFVRKETLPRVVVAGDLNGTVDDRALRPLTSRLRSAQEEAGQGFGFSWPASFPVVRLDQILSRGVTPVSARTLPRTGSDHLPVTAAFRL
>NZ_CP040916.1|WP_144003052.1|2726553_2727273_-|response-regulator
MGQNHGGASADVHVLLVEDDDAIRRSVGMALERYGYQVSAAPDGLTGLEMFRDGQHDLLLLDVMLPFLDGIGLCRRIRETSQAPILMMSARGDALDVVAGLEAGADDYVIKPVDTTVLVARIRTLLRRATFSAATPETSETADDGAVLTFRNLTVDTRGLEVRTGGHLVALTPTELRLLLEFVAAPGVVLERQRLLRNVWDYGWEGDSRVVDLAVQRLRKKIGADHIETARGFGYKFRR
>NZ_CP040916.1|WP_144323453.1|2725265_2726447_-|HAMP-domain-containing-protein
MAVGIGLLVHQRTEERGLGIGRAAAMRELDQAKADFRGEQPTRRDPRERSNYVVGDEVPDPLRDRLGSSSSTTVTWYDTRKPLQGPSMWAAERVDGTVIAVSVSMLGEQLSLEALDRHVRYAAIATLAVVVPLTLLAAELVLRRLRRVAGTARRIRHGDLDARTEGRGHDEISEISSAVDHMADALQERLRGEQRFTADVAHELRTPLTGLVTSASLLPESEATELVRDRVRVLRGLVDDLLEISRLDAGAERADTQPVPLGELVTESVRRAGLEEHVTVTVVGHPMAETDPRRLDRIITNLALNAHRHGGPPVEVTVDATTIVVRDHGPGFPPDLLRHGPQRFHTATTERGHGHGLGLTIAQGHSHVIAATLTLTNATPHGALATLTLPPPS
>NZ_CP040916.1|WP_144003051.1|2724575_2725241_+|DUF218-domain-containing-protein
MSDNQQGIAEDQWRLAKLIWDYHQMHHELRPVNVAIGLGSHDLGVAAHAAELYRTGLFPTLVFTGGNSPTTKARFPRGEAVHFREHAIDLGVPAEAILLEPNAANTGQNITLAREVLAAAGIHPTTVLLVSKPYMERRSFATARKLWPEVEFVCASEPLEFDDYVKTIGDEKLVLDMLVGDLQRVIEYPKAGFAIEQEVSVDVYAAYESLIRDGFTSRLIS
>NZ_CP040916.1|WP_144003061.1|2735534_2736737_-|MFS-transporter
MYRPLLVLAAAMFAIGTDSFVIAGILPDAADSLGVSVGTAGWLLTAYAFTYAVLGPVMAALTARRSRRPLFLAGFAVFTAGNLLTAFVPDFGVALAGRALAGFGGAMVTPAAVAAAAALAPPERRGRAIATVMTGLSAATALGSPLGTAIGSVTGNWRLTMVFVSAIGVLAALAIALLLPTIPTPPAVPLRTRLAPLGDRRIGLTLLTTLLVYTGLYTVYSFISESLDRATGGSGTTLAVLLFVWGLAATVGTLGSGGLTDRFGGRRVINVSIAVAAVDFALLPWTSAHLPSTVVALLVWGVCGWGLLAPQTHRLISALPSAAPLLTGLASAMVYVGVSAAPLVGQAGMAWAGPHWLGPIGAAFIALGLVVAETAHATIRRGQRDAPTEPRPQTTEGVRH
>NZ_CP040916.1|WP_144003062.1|2736909_2737338_-|Rrf2-family-transcriptional-regulator
MSANSRMTVATHALTWMALVCPKRPDGIVTSDQIADSVNTNPVVIRRTLGSLRDAGLVVSQRGQGAGWRLAREPGAITLRDVYLAVEPDPLLALHPSTPNQKCPVGRGIPPVLRGAYDRAEEAMKAELAGVTVADVLKETVA
>NZ_CP040916.1|WP_144003063.1|2737470_2738286_-|ATP-binding-cassette-domain-containing-protein
MNETGPPAGLSADRVSRIAGGRLIVDGVTLAPPPGAVVGLLGPNGSGKSTLLRLLAGVLAPASGVVTLDGEPLRDLGRRAVARRLALVEQQADTQVDLTVRDVVRLGRVPHRRAWVPSTADDECVVTEALARTGLSDRADQPWHTLSGGERQRSHIARALAQSPRELLLDEPTNHLDIHHQLDLLTLVAALPVTTVIALHDLNLAAMFCDEILVLKEGRAYAHGTPTQVITEPLIAEVYGVRARVTPPAAPLDHPTVTFLRPSDPPSALPG
>NZ_CP040916.1|WP_144003064.1|2738282_2739347_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSTAVRERKPGAWHARHGAWRTALLWAAGLVALPLSVAVAVTIGPADISVPDVWAAVAAHLGWGEAELTPLRDGIVWNLRMPRTLLAGVCGAGLAVCGAVLQSLLRNPLADPFVLGVSSGASTGAVAVVVLGVGGGAVSVSGGAFVGALCAFGFVLLLSQALGATTDRVVLSGVAAMQLFSSLTSFVILTAADAETTRGVLFWLLGSLSGADWTDVAVCAAVLAVALAVCLSQAHTLDAFAFGQDAAAALGVHVNRVRLLLLCTTALLTAALVSAAGAIGFVGLTLPHAARLLVGPRHARLLPVTALTGAVFLIWVDTLARTLLDPQEVPVGVVTSLIGVPAFVAVLYRTRRTG
>NZ_CP040916.1|WP_144323454.1|2739343_2740423_-|ABC-transporter-substrate-binding-protein
MRAAARPRTAVPGARTAPGTRLTALLAAGGLLLLTACGGGSAERHDAGAKAAGYPVTVTSCGKKAEVTAPPERAVSLDQGSTEILLSLGLADRMVGTGTWTDPVLPGLKKQNAKVERLADRYPSLEKVLSKEPDFVSASFLYTVGKGGVADRAKFTELGVPVYVSPSDCAGKDNGGDGDGTRTKTLTMDTVYGEIRDLARVFHVERRGERLVADLKSRVAKAKGTLKSSDASVLYWFSDSKAPYIAGCCGAPGVITRTLGVRNAFADTRAEWPQVNWETVADRDPDVLVIGDLTRKAQSAESAREKIKFLESNPVTKNLKAVKKKRYVLLSGQALNPTIRTVDGIEHVAAGLRAFGLAR
>NZ_CP040916.1|WP_144003065.1|2740707_2741154_-|glyoxalase
MNTTEAAQSTQTTPNLRAPDVWPTFQAHDAPALIDFLVTTVGFLRTAVHEDGGRVAHAQLDWPEGGAVMLGSYDPESAEWCLKPGTFGAYVVTDHVDALHRRLKEAGVKVVREIEDQPYGSREFAVEDPEGNKWCFGTYRGEPRPEQG
>NZ_CP040916.1|WP_144003066.1|2741159_2742032_-|helix-turn-helix-domain-containing-protein
MDTALREFVRAPLPPEQGGKVVSAVGYRTSGERPGLHRGLPSPYLTLIFSLDGPVVSGSTAEQATGPDAVRTDIVVGGLHQSPAYVVQPEHQAGIQLAVHPLAARSLLGLPAAELTGVLVTDGTDVLGRIAADVRERLCAADGWDERFACLNAYLARRAADAERLGPVRPEVAEAWAWLARHRGAGTLRGLAAHVALSERRLSALFRAETGVTPKQAARLMRFEHAKARMVRAVVAGAPADLARVAADCGYYDHSHLVRDFRQYTGASPSVWLAEECRNIQAGGHRGGED
>NZ_CP040916.1|WP_144003067.1|2742253_2743411_+|haloacid-dehalogenase-like-hydrolase
MAGRARGRARGRSRRAAFGLAGAVAAAVFAGGALWPGAGTADASRTGAEGRTAAGLKHWPKPVAAELGEVIAANEHKGAYAVFDADNTTYRNDLEEALLPFLEMKGVLTRKSMDPSLKVIPFKDTATHKESLYSYYNRLCEVDDQVCYPWAAQIFSGFTLKTLKGYVDELLAYDKPIPATYYENGKVTRTEVHRPEFSPGMRELYKSLRAHGIEVYVVSAASEDLVRMVLADPKYGYGVKPGNVIGVGLQLKDPGTGRVTSARKEIAEGRFGPKDRARLARYELTPNLWAPLTWYQGKPAAISTYIDEWKKPVLVAGDTPVSDGPMLFHSADVQHGGVRVWVNRKDSYLKQLDAMKRKNAARQRELGQPVTADKGWLTVTPEQLG
>NZ_CP040916.1|WP_144003068.1|2743407_2744385_-|asparaginase
MTTTVSVFTLGGTISAHSGGGSARLTGSQTLATVPVPDDVKTELHDFRRLPGSSLTLEDLAALAERVDEATAAGHGVVVVQGTDTLEETAFLLDVVCAPRTPIVVTGAMRRPDLPGADGPANLAAALAVAADPRCRGLGVLVVLADEIHAARHARKAHTTSLTTFASPGAGPLGRVVEGVPRILLRPQGPTVERPLRLRSAARVALLTLAVGDGGELLEAVDDRFDGLVVAAFGAGHVPQWLVGPLAARAARMPVVLASRTGAGPLLGETYRGPGSEADLLSRGLISAGSLDAPKARLLLHALLSDGADRQAIQGAFHRLDGSGA
>NZ_CP040916.1|WP_144003069.1|2744472_2745813_-|DUF2252-family-protein
MTTAAERAERGKAARKRASRSSHGAWIPSADRADPVAVLERQSADRVQDLLPIRYGRMAASPFAFLRGAAAVMAGDLAAQRHTGLTVQLCGDAHLLNFGVFASPERRLLFDLNDFDETYPGPFEWDVKRLAASVAVAARETGRGEDRAHDAALAAVTAYRTAMRRLARKGELDVWYASVDTDDLLRLIGSARHRERAAARLAHARRRTSLQALGKLTEVVDDRRRIVHDPPLLEPAGAPDMAALRKIFGDYRSTLAEERRLLLDRYRFVDAARKVVGVGSVGTRCFVVLLTGRDTDDPLFLQIKEAVRSVLEEHLPTGPYLHPGHRVVAGQRLLQAAGDIFLGWMTGPQGRAYYWRQLRDMKGSVDIAELEPAELLAYARLCGTALARAHARSGDRIAIAAYLGSADTFDRAVASFAVRYVSQNATDHKALTGAIDAGVLSAATTY

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Crispr_ID: NZ_CP040916_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_4

3027174-3027285

Orphan

Consensus_repeat	Method
CGCGCTTGTCCTCAAACGCCGGACGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_4

>merge|NZ_CP040916|4|3027174-3027285|CRISPRCasFinder
CGCGCTTGTCCTCAAACGCCGGACGGGCTTGGGGCTCCTGCCGCCCGCCGGCTCCCGTGGCCCGCCTCACCGCACCGCGCTGACGCGCTCGTCCTCAAACGCCGGACGGGCT

>NZ_CP040916|4|4|3027174-3027285|CRISPRCasFinder
CGCGCTTGTCCTCAAACGCCGGACGGGCT	TGGGGCTCCTGCCGCCCGCCGGCTCCCGTGGCCCGCCTCACCGCACCGCGCTGA
CGCGCTCGTCCTCAAACGCCGGACGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144323481.1\|3013889_3014801_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003279.1\|3028840_3029869_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_CP040916.1\|WP_144003277.1\|3025622_3027104_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP040916.1\|WP_144003276.1\|3022499_3022886_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003274.1\|3016872_3018333_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236096
NZ_CP040916.1\|WP_144003275.1\|3018527_3022280_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173815
NZ_CP040916.1\|WP_144323482.1\|3022973_3024296_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP040916.1\|WP_144003278.1\|3027363_3028629_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP040916.1\|WP_030684833.1\|3024547_3025585_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP040916.1\|WP_144003283.1\|3032558_3033389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377194
NZ_CP040916.1\|WP_144003280.1\|3029858_3031019_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP040916.1\|WP_144003286.1\|3035394_3036297_+\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003287.1\|3036271_3037045_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NZ_CP040916.1\|WP_144003284.1\|3033385_3034402_+\|GHMP-kinase	unknown	unknown	gnl\|CDD\|226917
NZ_CP040916.1\|WP_144003281.1\|3031015_3031825_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP040916.1\|WP_144003285.1\|3034322_3035366_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107204
NZ_CP040916.1\|WP_144003272.1\|3015079_3015691_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003271.1\|3014797_3015031_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
NZ_CP040916.1\|WP_144003273.1\|3015703_3016579_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003282.1\|3031824_3032562_+\|methyltransferase	unknown	unknown	gnl\|CDD\|129628

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144003279.1\|3028840_3029869_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	4.63836e-79
NZ_CP040916.1\|WP_144003277.1\|3025622_3027104_+\|GAF-domain-containing-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.25178e-13
NZ_CP040916.1\|WP_144003283.1\|3032558_3033389_+\|hypothetical-protein	gnl\|CDD\|377194	pfam04016, DUF364, Putative heavy-metal chelation. This domain of unknown function has a PLP-dependent transferase-like fold. Its genomic context suggests that it may have a role in anaerobic vitamin B12 biosynthesis. This domain is often found at the C-terminus of proteins containing DUF4213, pfam13938. The structure of UnioProtKB:B8FUJ5, Structure 3l5o, suggests that the protein has an enolase N-terminal-like fold and this Rossmann-like C-terminal domain. Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The protein may be playing a role in heavy-metal chelation.	1.4772e-10
NZ_CP040916.1\|WP_144003274.1\|3016872_3018333_+\|AMP-binding-protein	gnl\|CDD\|236096	PRK07787, PRK07787, acyl-CoA synthetase; Validated.	0
NZ_CP040916.1\|WP_144003275.1\|3018527_3022280_-\|S8-family-serine-peptidase	gnl\|CDD\|173815	cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	4.6239e-79
NZ_CP040916.1\|WP_144323482.1\|3022973_3024296_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.45652e-72
NZ_CP040916.1\|WP_144003278.1\|3027363_3028629_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.63215e-41
NZ_CP040916.1\|WP_030684833.1\|3024547_3025585_+\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	1.73874e-142
NZ_CP040916.1\|WP_144003280.1\|3029858_3031019_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.58059e-78
NZ_CP040916.1\|WP_144003287.1\|3036271_3037045_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	0.00269211
NZ_CP040916.1\|WP_144003281.1\|3031015_3031825_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.00488e-102
NZ_CP040916.1\|WP_144003285.1\|3034322_3035366_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	2.48156e-64
NZ_CP040916.1\|WP_144003284.1\|3033385_3034402_+\|GHMP-kinase	gnl\|CDD\|226917	COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism].	9.23438e-51
NZ_CP040916.1\|WP_144003271.1\|3014797_3015031_+\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.09342e-12
NZ_CP040916.1\|WP_144003282.1\|3031824_3032562_+\|methyltransferase	gnl\|CDD\|129628	TIGR00537, Putative_protein_methyltransferase_AF_1784, HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. [Unknown function, Enzymes of unknown specificity].	1.92996e-06

>NZ_CP040916.1|WP_144003277.1|3025622_3027104_+|GAF-domain-containing-protein
MTEDVVSGAPLPLPQLLDAVLGVGTELSLRPTLQHIVDSAAALTGARHVALRVSAAAGGRPECFTAGAEPAPSAADDEGAVLSIPIHVQDEEFGRLHLTHEPGGVFTDEDRDTLRVLASQAGIAIGNARLYETARQRERWIEGAAAVTTALLTGEAAPDALMTVAQQARLLADAAAGVVLQPTDEGGMRIVAAATSGDAGPGYRRHPAAAAQNDLMGTTIEPGSAVLEQLLGGQPVFIEDSATDPRMTTRVRSRFGPSMMLPLQAGGRLIGTLALPRRRGDPPYTAVERLLATQFASQAALALVLADAQQSRQRLAVFEDRDRIARDLHDLVVQRLFATGMMLESTRRRAASGPEQSALDQAVDELESTIQEVRTAIFALQQPPADAPTTFRGKVLKETAGAGAVLGVQPSVHFTGAVDTRVAEPAAGRLLAALRRALAAASRRPGVSRVEVTVEAGVSLPDGRAGVRLVVFDDGETGAAADAGTTVTWQAPL
>NZ_CP040916.1|WP_030684833.1|3024547_3025585_+|rod-shape-determining-protein
MTVSLEQLRRCHIGVDLGAARTRVFVKGAGLVVDEPSVAAVNTRTGALIAVGQFAEQMTGRTPAYIRVVRPVSGGTVVDIQMAQRMLRSLLGEKLRRTLRRKPRLRAAACTPHDADPLAQRATVETLVGLGARRVELVDTLIAAAVGCGLPVERAEATMIMVCGAATTQVAVLSLGSIVTAERIPVGGEAIDHAIVQHLRHQHELMLPSQSVRPLQLALSGNGLTPHGPESTEIHGRDVATGLARSVQVDTAAVRDAIHTPLTAVLDGIGKVLRDCPPDLVADLADRGIMMVGGSALLPGLDQMLRNATGMPVHIAERPDVCAVLGLGAMLEGKIQPLVLAPLTG
>NZ_CP040916.1|WP_144323482.1|3022973_3024296_-|MFS-transporter
MPGPRPGAPATERPERPAAPPPERRILADLTPLRISADYRRLWVGNTVSWIGQAMTALAVSLQVYDITGSSFSVGLVGLCSLVPLVVFGLYGGAIADTVDRRKLGLYSAAGLCGLSVVLAAAAFASFHHVWFLYAVVALQATCGALNSPARTAMIPRLLPPEQLPAANALTSLTTTSGTTVGPMLGGLVVGLWGYQAAYVIDAVAFTAALYAMWRLPSMLPGADSADGAAADGGKRRRASVADGLRFLATRPNLRMTFFTDMCAMVLAHPRALFPAIAVVWYGGDAKTAGLLAAAPAVGALLGSVFSGWLGRIHHHGFAIALSVAGWGTAVAVFGLTRDLWLGVVFLALAGAADTISMVFRSTMLQAATPDEMRGRLQGVFIVVVAGGPRLGDFLAGTVGDLTSPRVAIVGGGAACVLAVGLLVLRWRAFLRYDARDPQA
>NZ_CP040916.1|WP_144003276.1|3022499_3022886_+|hypothetical-protein
MDGGLVEYTTDSGARVVVALDPDDLDGVRLVARGDGPARAAHTFEATLDSARAAAEAALRVFRDGTLKPDTVEIEFGVRMTAEAGAVLVKGSAEGHLLVRLSWSPEKDRPQADPVADAAARADSAAPS
>NZ_CP040916.1|WP_144003275.1|3018527_3022280_-|S8-family-serine-peptidase
MTPRPRQVPRPRHARRGLLPAGLALALLPAGLTAAAATATAAPGPESRTPQQAAHTRQSTATVTLVTGDTVTVTRLGGGKRTVTVDRPRGASGTVRTSVVDGRVTVVPDEALPYLRAGVLDERLFDVTELIRQGAGVRHGAQGERGGRGALPLIVTYKNAPAAREAPRGTREVRPLPSIRGAAVEAAPGTAFWRSVTGGAAKGRGLGGGLAKVWLDGRVEADMEASNAQIGTPEAWQAGLTGKGVKVAVLDTGVDVSHPDLNGRVGATKSFVPGQEVADRDGHGTHVTSTVGGSGAASDGKEKGVAPGAELAVGKVLSDEGFGSESQIVAGMEWAAKDVDAKIVSMSLGSSEPSDGTDPMAAAVNALTKETGALFVIAAGNTGAPSSIGSPAAADSALTVGAVDSADEAAYFTSQGPRHGDRALKPDLSAPGVDILAARSRLAPGQGDYTAMSGTSMATPHVTGVAALLAERHPDWTGQQLKDALMSTSHELDASVYALGAGRVDVPSAIDAKVTATGAADLGFYAWPYDDNKPVRRTVTYANTSDTPVELSLAAEGAAEGVVTLADKKLTVPAHGTAATTVTGDGARAPVGNTSGRIVATAGGKRVAHTAFGLVKEEERYTLTLRVKDRDGAPTGADVVVHPLAEGEDPYPAAVGDSGELELRLKPGAYSLSSFLDVRGAHGADSLGLGFLAAPEVDLDRDRTVTLDARKLREITAKVPRRAETRQLVMEAGRTANGSSYQGAAQVPVKYDSVFAAPTPKVRRGTFEYRTVWRLGKPLLDVEGIRAAVAQPGGTVTEGRTRLKLVDAGDGTPGAYAGKDVRGRAAVVRRTGAAGQPTPAALAQAAQDAGAKALFVTDGVPGRLNAWFGTDDNADRPLTIATVDAADGARLLAAAREGRTATTTGTPYTPYVYDLEDGFTGAVPDRPLTYAPGTRELAVVDAEFHAPARKATPGGEFRYSLTDTFPVGIGFLEKIAYPAERTDYVASGEGRLWHETVHAGPTGLEQRGGLVGYRGGKRTGLDWFKPVWHPWLGTGLGWGQERTGDDLAFNVPGWGDSGPDHTGFGDVWNDDSMTQVTAVYADGELVDRRQSSGVYVWDAAPEERTYKVVTDTTLSAERWRLATKGHSEWTVRSARTPADRKTVLPVLNLGFDVDTDLYGDVRGGRSLPVGLSASYVRGATAPGAIRSARLDVSYDDGASWTAVPLRRDGSSWHGKLRVPRGAAAVSLRGSAADDRGGSVSQEILRGAGVR
>NZ_CP040916.1|WP_144003274.1|3016872_3018333_+|AMP-binding-protein
MEPEPLIPALTAPGDSPALRFGDRGLTYAELAATAGALAARLTDAGAARVAVWATPTLETAVGVVAALLAGVPAVPLNPKSGEKELGHIVGDSAPSLVLAGPDDELPAALQGLGRVDVRPAPEGPAPAAPREVSPAAPALVVYTSGTTGPPKGVVLPRGALAATLDALADAWQWTGDDVLVHGLPLFHVHGLILGVLGPLRRGGSIRHLGRFSTAGVTRELASGATMLFGVPTMYHRVAEALPDEPELVKALAGARLLVSGSAALPVHDHERIASATGRRVIERYGMTETLMNTSVRADGAARAGTVGLPLPGVELRLVDEADQEVPAGPDAVGEIQVRGPNLFTEYLNRPDATAAAFADGGWFRTGDMAVREPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHDGVREAAVTGEPDPDLGERVVAWIVPADPGRVPSLDELAAHVAARLAPHKRPRALHVLDALPRNDMGKILKRALTASG
>NZ_CP040916.1|WP_144003273.1|3015703_3016579_-|hypothetical-protein
MALAVALATFRPQDHIDAVDRDLPDLVRAVTAAGATARAEHWDDPDVDWSAYDLVLIRSTWDYIEHVAEFTAWAERVGAMTRLANPAGVVRWNTDKRYLGELAAAGVPTVPTAYATRSDGELDLPAGEFVIKPTVGGGSHLAGRYRPDEHAAARAHVARLHAEGLTALVQPYMHRIDTTGERALIFFGGHFRHAIRKGAVLTPGTAYDADKISHPDVRAWQPTDAELALAERALAAVPGAPELLYARVDLVDGDDGAPRVMELELIEPNLFLDVHPESLPVVAELIVKTAG
>NZ_CP040916.1|WP_144003272.1|3015079_3015691_+|hypothetical-protein
MDPMSSSPSAPFTPLDFQLVLLRRMADHNPDLVEDARHALGVSIGEMREANRRWQAMVRSPRSRAAVSRYRSVLGEPGSTARRTIGDLECDALLWPVPLWPDLRFEVLLGPRNAVWNEWLVRAPGAAAPALRTLADLTPWSCTVDEAARAFAPARPMEGTAPTRWRLAFSGPDGEGGRRACVAEFTWGLLQRVSYVEGGGPGR
>NZ_CP040916.1|WP_144003271.1|3014797_3015031_+|Trm112-family-protein
MNPDDPLLKILACPLDKGPLVLVLPERDAAAEVDQTLYNPRLRRRYPIVDGIPQLLPSSGEQVTDEEHERLLRQAAP
>NZ_CP040916.1|WP_144323481.1|3013889_3014801_+|hypothetical-protein
MVAALLANVLYSTGFVLEKRALSSMPSVSVRAPLRLLGQVVSSPLWLGGSLALAAGFGAQLAVYRTLPIAAAQGIFVSGLVLLLLLSSRLLGERTSGRERIAVGAILVALLMVVLSLDEGADTVGEDAPVPLVLLVSLPSLALGVWLYANGERRAGQRHRQPTTGVEYGVAVGLLYGVSSLAIKGVSSSLTTHGIGGALLDLLRSPYPYLLLFTGAFGLVMSQAALQRCRASLIVPVCTTVTSLFTAVLGTLAFGEALPHDPVRLALRVAGTALAVAVLLVMPKHDAPPAAQTPTPPKELTSG
>NZ_CP040916.1|WP_144003278.1|3027363_3028629_-|MFS-transporter
MATTPTQTAGPAEDAEGGAAPARSVLRDPAFLRLWSGTTASGLATWALPFVLGLAVLDRTMGAAALGLLLAARTAGFLVAVAVGGVLADRYSRRGVVLWAGLAAAAATPLLALGLGRSLALMVVAAVVAGAGQGACRPAFQALTAEVVDEDRRQAANSAMTLSVRATTLAGPSLTALLAVVLDTWALLLGIGLLWLVAALVPGPGRAGGTAAVAAGERPSFRAEFGEGLREARRHPWFLAGLGALTTVIATGYSATGVALPLVSRDKYDTGVVLAAAMTAYTLGALGGALVVARWRPRAQGWTALAGLALYGFAPLSLLLPVHWAVVVAAYAVAGVGIELFNVPWFTATQREVAPDKLARVSSLDFMLSYGLAPAGLALIAPAIETFGPRPVLAVCAALCFTAPALAALTPTTRDFTRPHP
>NZ_CP040916.1|WP_144003279.1|3028840_3029869_+|ABC-transporter-substrate-binding-protein
MRLRHPARLGTAALALSLTAVGCASGGNGSSDGKAAAARKTTVTSCGKKLGFDGPPKRAVALDQSSTEVLLALGLQDRMAGTSNLKTRIAPEYRAAYDGVKVLSPKILTSEQLRAATPDLAVGGFADYFTKDRVGTREELAELGLPSFVSAVDCPKQNTVGGRARTPFELLFKDYADLGKAFGVEKRARQLVKEQRATLAGAAKTKKRVEGEPSVAWLYSVYGDTPYVAGRSAMPSEMSRVVGARNAFDDVDEDWPQVSWEEVAKRKPDFIVLGDLSERGKPGDSAEDKLKAVRANPVMAKLPAVQRKRFIEIPGTEMDPSVRTVSALPRLVTGMEDLGYVR
>NZ_CP040916.1|WP_144003280.1|3029858_3031019_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSASPRPAGAGGVPGPPGGGGATDLLHPSARGAAAPVPAASPAVPRTALRGTGARAGLFLLAALALVGSAAVSVRIGTTHVSYGDIARSAGFHLGLGTEPAAPLVDSLIWELRVPRVLMAALVGASLAVCGAALQAVTRNALADPYLLGISSGASTGAVAVVVLGLGSASLGVTGGAFVGALVSFALLMLLLRRGGLDSVRIVLTGVVVSQLFTALTSLVLMASGDAEMIRAITQWLLGSMAPARWDAVAVTAAVTAVGLLVLWLNSAALDGFSFGADTASSLGVDVTTTRRLLLVVTSLMTSVAVASVGAIGFVGLIVPHGVRFLVGPGHRVLVPLSALVGAVFLVWTDALARVAFTPQEVPVGVFTALLGVPLFLLVLRGRGEL
>NZ_CP040916.1|WP_144003281.1|3031015_3031825_+|ATP-binding-cassette-domain-containing-protein
MRITAENVSWAVAGRTIVDGVSLDVAPGETVGLIGPNGSGKSSLLRCLAGLRAPTAGVVRYDREPIHAWSARRVARRVAFVEQAADTDSELRVVDVVGLGRTPFGDRWRGPDARDRAVVDAALARLGLTGLRERAWKALSGGERQRAHIARALAQQPYAILLDEPTNHLDVKHQLELLALLAGTDQTVLVALHDLSLAARHCDRLLLLRGGRLVAAGPPKDVLTPELLAEVFEVDAETGPDALGHLAVSYRGPLPHPLADFDTPTEKDS
>NZ_CP040916.1|WP_144003282.1|3031824_3032562_+|methyltransferase
MDTQATGPDLLRQLPPPLPVERIVALNQPKGDLHTTRAYEWNGWTFDVPPGVFLPGETSRMVHERILDGRVETRGLRYGAMGAGLGVEAVAAGVRGAREIYAMDVHTTSVATAARHYARLVGPRDGTAFLPAAGDLFDGLPPGTRLDVVTFNPPAVSQAVSEDPDVVRNTCVGSPLLARFFAQLAERELLAPDGVAYVIASNTADLRRIVQDAQDRGFTPRVDSVRDWRDGVLTFLFAFTRGGRA
>NZ_CP040916.1|WP_144003283.1|3032558_3033389_+|hypothetical-protein
MKRPENVTELLDAVLAGELGPDPAESTATSVFWVHHGTRLAGGDVTYLNQYVLVRVGGAFGGCAFEAGETDPAICREASGSSLAALLKDAPTPLRTAALDAYLGAVAPHREAPGAEPVTLPAGPPEVRAVARDAAVAGLLDIEPGAKVALIGVVNPLVAAIRERGGDPLPCDFNLRRTQWGDPVSRDMHEVLDAADAVVATGMTLSNGSFDTILARCRERGVPLVVYAQSGSAVARAFLGAGVTALSAEPFPFSQFSAEPTVLYRYRAAPGDKGGA
>NZ_CP040916.1|WP_144003284.1|3033385_3034402_+|GHMP-kinase
MRARGAGRAACHHGEILQGVFLDERGRRVAGLVTLPLAGLGTRAEFTRRQDTEDVTVVPADRTKAQRAATYALAECATQRHVPLCGGELRLDGDIPVGLGMGSSSSDVIAAVRAVADAFGVRLAPEAVARLAVRAERASDPLMLEGRALLFAQREGRVLEDLGAALPPAVVVGCALGGGRPVDTLALPAPADADAADVPGYERLRALLRRAVAAADPVLLGHVATESARLRQRVLPHAEFGELTAVAGRVGAVGVQIAHSGSVAGLLFDPAAPDLRGRVRGCRRALAAAGIPTTHTFHTTAPTSATTSEEPPHGRAHRGSDRPPRPDTCGRRVRLPAL
>NZ_CP040916.1|WP_144003285.1|3034322_3035366_+|pyridoxal-phosphate-dependent-enzyme
MDEHIAEAIGRPDLIRVADGFVCLRFETMKVVSALAAVRHLLDTGAVRRGDTLLDSSSGIYAYALALACHRYGMRCHIVGSTTVDRALRTQLAVLGAHVEQMPPSDDLKLDQKRRVARVHEILRAHPDYFWMRQYHDDIHYLGYEAIAERVCEETGADGGLTLVGGVGSGASTGALARYCRARRPDVRLVGVQPFGSVTFGSEHVADPEIIIAGIGSSIPFANVSHTAYDTVHWLSFDTALAGSVDLLRRHALFAGLSTGAGYAAARWEHAHAPGRTTVFVAADTGHRYVDTVFARHAEAAPLASLAPRTVTSPDELALPWARMEWSGAAAPAAAGTESARASLQRT
>NZ_CP040916.1|WP_144003286.1|3035394_3036297_+|DNA-binding-protein
MVEDEEGDVTAYAVDAVRRLVAVDAAHGARAAVPLVRAALRGLPRGVRRADSDRVAALAELYEVAGWILFDAGHYRRAHRLNARALALAERCGDRWTARLTLLNDSMLLAHTGRPRAALTAAARARGPRPLPPRVASLVLIREAHATALLGARREPRALLDRAGSLFLDGVSRHDPPWAWWLDEWELLGHRGWVLARLGDTERALPALHRAATAPGPSYRHLFTAQLLAALVRAGARRDAERLVTDLAPRARGIGSARATELLGRIAHRLREPGAAPPSLRDAAVFLLESLPATGPARRP
>NZ_CP040916.1|WP_144003287.1|3036271_3037045_-|FHA-domain-containing-protein
MNGPASLARGVAPAPPGTLHARTVTGDLRAPPRPGLTVRFGRGDEPDVDLGVGEHDLMVSRRHGELTYRDRTWWLRNTGRQLLRLPRGRMMHTSTEPLPLAPGYTPLFVRGSGYREHLVELYVTGHDDLGPVSRRRADTVPPKRWPLSDEERLLLVVLGQEYLLYEENPRPLTYLRAAKQLAFLRPDELWGERRIEYRIEAVRRRLHDSGFPYPLLHDTSVGRPSDNSLLHNLLRGLVESTTLVPPDLGVMDDEPDR

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Crispr_ID: NZ_CP040916_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_5

3578370-3578460

Orphan

Consensus_repeat	Method
CCCCGCGCCCCTTCGGGGCGCTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_5

>merge|NZ_CP040916|5|3578370-3578460|CRISPRCasFinder
CCCCGCGCCCCTTCGGGGCGCTGCCCCGAACGCCCCCGCACAGCGCCAAGCCGCCCATCGGCACAGCCCCGCGCCCCTTCGGGGCGCTGCC

>NZ_CP040916|5|5|3578370-3578460|CRISPRCasFinder
CCCCGCGCCCCTTCGGGGCGCTGCC	CCGAACGCCCCCGCACAGCGCCAAGCCGCCCATCGGCACAG
CCCCGCGCCCCTTCGGGGCGCTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144003622.1\|3568329_3568869_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003635.1\|3583926_3584784_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP040916.1\|WP_144003632.1\|3580582_3581668_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP040916.1\|WP_144003625.1\|3573399_3574359_-\|2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|237888
NZ_CP040916.1\|WP_144323539.1\|3585761_3586073_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003624.1\|3572594_3573413_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|132299
NZ_CP040916.1\|WP_144003626.1\|3574351_3575407_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP040916.1\|WP_144003631.1\|3579377_3580526_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP040916.1\|WP_144003629.1\|3577446_3578235_-\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225099
NZ_CP040916.1\|WP_144003630.1\|3578462_3579176_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003623.1\|3571451_3572522_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|237887
NZ_CP040916.1\|WP_144003637.1\|3586130_3586661_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP040916.1\|WP_144003627.1\|3575403_3576153_-\|phosphonatase-like-hydrolase	unknown	unknown	gnl\|CDD\|274534
NZ_CP040916.1\|WP_144003634.1\|3582168_3583803_-\|choice-of-anchor-A-family-protein	unknown	unknown	gnl\|CDD\|275059
NZ_CP040916.1\|WP_144323538.1\|3569812_3571297_-\|nucleotide-pyrophosphatase	unknown	unknown	gnl\|CDD\|293742
NZ_CP040916.1\|WP_030682074.1\|3568949_3569729_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP040916.1\|WP_144003638.1\|3586812_3588219_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP040916.1\|WP_144003636.1\|3584900_3585665_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|376730
NZ_CP040916.1\|WP_144003633.1\|3581664_3582150_+\|heme-degrading-domain-containing-protein	unknown	unknown	gnl\|CDD\|179430
NZ_CP040916.1\|WP_144003628.1\|3576164_3577286_-\|TIGR03364-family-FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|132407

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144003635.1\|3583926_3584784_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	6.17195e-93
NZ_CP040916.1\|WP_144003632.1\|3580582_3581668_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	1.55333e-97
NZ_CP040916.1\|WP_144003625.1\|3573399_3574359_-\|2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|237888	PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional.	1.43841e-131
NZ_CP040916.1\|WP_144003624.1\|3572594_3573413_-\|ABC-transporter-permease-subunit	gnl\|CDD\|132299	TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.	3.56754e-57
NZ_CP040916.1\|WP_144003626.1\|3574351_3575407_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.54578e-141
NZ_CP040916.1\|WP_144003631.1\|3579377_3580526_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.05657e-39
NZ_CP040916.1\|WP_144003629.1\|3577446_3578235_-\|UTRA-domain-containing-protein	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	9.10016e-61
NZ_CP040916.1\|WP_144003623.1\|3571451_3572522_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|237887	PRK15046, PRK15046, 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional.	3.94787e-171
NZ_CP040916.1\|WP_144003637.1\|3586130_3586661_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.47883e-23
NZ_CP040916.1\|WP_144003627.1\|3575403_3576153_-\|phosphonatase-like-hydrolase	gnl\|CDD\|274534	TIGR03351, PhnX-like, phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the substrate is also, like Pald, a 2-oxo-ethylphosphonate. Despite this, the genomic context of members of this family are quite distinct from PhnX, which is almost invariably associated with the 2-aminoethylphosphonate transaminase PhnW (TIGR02326), the source of the substrate Pald. Members of this clade are never associated with PhnW, but rather associate with families of FAD-dependent oxidoreductases related to deaminating amino acid oxidases (pfam01266) as well as zinc-dependent dehydrogenases (pfam00107). Notably, family members from Arthrobacter aurescens TC1 and Nocardia farcinica IFM 10152 are adjacent to the PhnCDE ABC cassette phosphonates transporter (GenProp0236) typically found in association with the phosphonates C-P lyase system (GenProp0232). These observations suggest two possibilities. First, the substrate for this enzyme family is also Pald, the non-association with PhnW not withstanding. Alternatively, the substrate is something very closely related such as hydroxyphosphonoacetaldehyde (Hpald). Hpald could come from oxidative deamination of 1-hydroxy-2-aminoethylphosphonate (HAEP) by the associated oxidase. HAEP would not be a substrate for PhnW due to its high specificity for AEP. HAEP has been shown to be a constituent of the sphingophosphonolipid of Bacteriovorax stolpii, and presumably has other natural sources. If Hpald is the substrate, the product would be glycoaldehyde (hydroxyacetaldehyde), and the associated alcohol dehydrogenase may serve to convert this to glycol.	5.83312e-61
NZ_CP040916.1\|WP_144003634.1\|3582168_3583803_-\|choice-of-anchor-A-family-protein	gnl\|CDD\|275059	TIGR04215, conserved_hypothetical_protein, choice-of-anchor A domain. This domain may occur as essentially the full length of a protein, except for an N-terminal sequence and a C-terminal protein-sorting signal such as PEP-CTERM or LPXTG. Most often, the putative surface protein is longer and contains repetitive sequence regions. This is one of very few domains for which both anchoring domains occur, and designated choice-of-anchor A domain. The best characterized member is Bacillus anthracis protein BA0871, a collagen-binding protein with five CNA-family protein B-type repeats toward the C-terminus and an LPXTG cell wall attachment motif.	4.61163e-52
NZ_CP040916.1\|WP_144323538.1\|3569812_3571297_-\|nucleotide-pyrophosphatase	gnl\|CDD\|293742	cd16018, Enpp, Ectonucleotide pyrophosphatase/phosphodiesterase, also called autotaxin. Ecto-nucleotide pyrophosphatases/phosphodiesterases (ENPPs) hydrolyze 5'-phosphodiester bonds in nucleotides and their derivatives, resulting in the release of 5'-nucleotide monophosphates. ENPPs have multiple physiological roles, including nucleotide recycling, modulation of purinergic receptor signaling, regulation of extracellular pyrophosphate levels, stimulation of cell motility, and possible roles in regulation of insulin receptor (IR) signaling and activity of ecto-kinases. The eukaryotic ENPP family contains at least five members that have different tissue distribution and physiological roles.	1.29168e-24
NZ_CP040916.1\|WP_030682074.1\|3568949_3569729_-\|HAD-family-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.14165e-130
NZ_CP040916.1\|WP_144003638.1\|3586812_3588219_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.06328e-28
NZ_CP040916.1\|WP_144003636.1\|3584900_3585665_-\|membrane-protein-insertase-YidC	gnl\|CDD\|376730	pfam02096, 60KD_IMP, 60Kd inner membrane protein.	1.44132e-36
NZ_CP040916.1\|WP_144003633.1\|3581664_3582150_+\|heme-degrading-domain-containing-protein	gnl\|CDD\|179430	PRK02487, PRK02487, heme-degrading domain-containing protein.	1.14732e-86
NZ_CP040916.1\|WP_144003628.1\|3576164_3577286_-\|TIGR03364-family-FAD-dependent-oxidoreductase	gnl\|CDD\|132407	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.	4.9517e-111

>NZ_CP040916.1|WP_144003629.1|3577446_3578235_-|UTRA-domain-containing-protein
MDHQDNPLAAPPAHLRDQLPGAPIRSGIPEHGRIPKYYAVKARIAELIEELGVGRALPTERDLAERYEVARETVRQALRELLLEGRLRRQGRGTVVAGPKLEQPLSLASYTEGVRRQGRTPGRTLISLDRFPCPAALAADIGAGQGEPVWHMERVLLADDERVGLESTYVTVARVPRLDEDFDPDSSFYAYLRDRLGIAFGDADERIETVLATPREALLIGTPPALPMLLLHRVSRDTEGGPLERVRTLYRGDRFSFTTHLG
>NZ_CP040916.1|WP_144003628.1|3576164_3577286_-|TIGR03364-family-FAD-dependent-oxidoreductase
MRVIVVGAGVVGTMHAWHAVERGHEVVQIERESEARGASLRNFGQIWVSGRAGGEELETALRARELWEEIGARVPGLGFRPIGSLTLVRNDRERAVAEAALARPDAAARGYKLLAAEEARALNPALRGDFTAALWCERDAAVEPRTAQLHLREELLKSPRYTFLPGREVRDVVGPASVRDDHGDVHTGDAVVLCTGAWLGGLVRELAPELPVRRVRLQMMQTDPLGEPLTTSVADADSFRYYPAYRSPELDALNAGQAQPATAAAHKMQLLMVQRADGGLTIGDTHEYEHPFAFDTVEDPYDHLTEVVEGFLGRPLPKVRRRWAGVYAQCVDTSRVVHRERVRDGVWLVTGPGGRGMTCSPAIAEQTADELGW
>NZ_CP040916.1|WP_144003627.1|3575403_3576153_-|phosphonatase-like-hydrolase
MQDTQESQNTQDAQDAQDTRAANIKLVVLDMAGTTVADGGLVERAFAAAAGELGVEPGSADHAAKLDYVRATMGESKISVFRHLFGAEDLARRANTAFEKAYGELVDDGLVAPVDGAREAVDALKADGLTVVLTTGFARVTQDAILDALGWRDLVDLTLCPADAGGRGRPYPDMVLAAFLRTGAADSVREVAVAGDTAYDMRSGVRAGAGIVAGVLTGAHDESALRGAGATQVLPSVAELPALIRGSGS
>NZ_CP040916.1|WP_144003626.1|3574351_3575407_-|ATP-binding-cassette-domain-containing-protein
MSSGIRFDSVTVSYGGNVVLDSLDLTVGPGEVMALLGPSGSGKTTALRAVAGFVTPASGRVFIGDRDVTGLPPHRRGIGMVVQQYALFPHMRVDENVAFGLRARKAPKPEVPARVAEALEMVGMAAYAKRYPRELSGGQQQRVAIARALAIRPGVLLLDEPLSALDAQLRSGMLAELARLHRELPDVSILYVTHDQVEALTLADRIAVMDRARLRDVGTPQELYRRPRTEFTASFVGNANLLPVSVGEGAVSLGATEVKVATDGVAAGVTATLCVRPHLMGLGPGPNALTGSVTEVQWRGATHRLYVDVGGHAVKADVRELREPPSLGDEVTLHFAPDDAVLLAAGVSSDG
>NZ_CP040916.1|WP_144003625.1|3573399_3574359_-|2-aminoethylphosphonate-ABC-transporter-permease-subunit
MGDPTPGLVKGGAAPSAVPTPPQALGSAPAGDAPLALRNDCPQRKRQVPAFVWALPPLALLGVVFLYPLGLVVQQSVRPDTGGTSLQPYSDVFASEAFRDALGTTVWLAVGATVGCLVLGFVLALVIAFVPFPGGKAVARFIDVFLSFPSFLITLALLFIYGTKGMANGLWTDATGSGGDGPFQFLTTPWGVLLAEITYFTPFVMRPLLAAFSQLDTAQLEVASSLGARPARIVRKVILPEALPALAAGGSLVLVMCLNEFGIVLFTGAKGVTTLPTLIYGKAMLESDYPAACVGAVVNIAISVGLYGLYRVVSRRAGA
>NZ_CP040916.1|WP_144003624.1|3572594_3573413_-|ABC-transporter-permease-subunit
MLVHSRKGKWGLWAVFAVLFLPVFALPLAVIVAASFAGHWSGAFPSAFTTEHYSAATRGESLEALTTSLLTALGASALALAVGTWAALAADALKRRGGVASRVWGRVLDTLFMLPVAVPSVVVGLALLVAFSKPPMILNGTSTIVVLAHAVLVTAFAYQSVSAAVRRLDPAYEQAAASLGARPGYVLWRVKLPLLLPSLTAAAGLCFALSMGELSATMMLYPPDWTPLPVRIYAATDRGAAFTGAALAVVLMAATLLVLFAVERVRTRASYR
>NZ_CP040916.1|WP_144003623.1|3571451_3572522_-|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MVTVTPVRALAALGGCALLATTLTACGGDSAASDAKVVTVYSADGLKGENGDGWYDRVFKDFENRTGIEVKYVEGGSGEMVQRAVREKSNTQADVLITLPPFIQQADEKGLLQAYEPKGSEQVDGANKAADGKWTAVVNNYFGFIHNKKELKGSKAPRTWDELTDGTYKNKIQYSTPGVAGDGTAVLIKAMHDFGGKEPALKYLGKLQSNNVGPSASTGKLAPKVDKGELLVANGDVQMNYAQSKDMPNLGIWFPAKEGKKPTTFALPYAAGLVNKAPHSANAKKFLDYLLGRTAQRQVSEIGGGFAARKDVKATDANAIALDKLVDGVEVFEPDWDDISKNLTEYVDDWKSATGS
>NZ_CP040916.1|WP_144323538.1|3569812_3571297_-|nucleotide-pyrophosphatase
MRRRSLLVSAAALATAAGPLSGLARAAAARKPKVLVIGLDGALLNRVKDADAPRLKSLMARGLTAPSSIYANPLAPTMSGPGWSTLLTGVWPDKHKVVNNDFTGHDLARYPDFMTRAEAAKPALRTYAVASWAPLTDTVFSSKVDTRVSTPSAEYDAGTTSRAVTALTEGDPDAVFVQLDNIDHAGHTSGAASRAYLDAIHGADAQVGRILDAVTSRPAHGDEDWLVMVTADHGHTDAGGHGGSSWPERQTFLIAVGDGLTAGSLRHDVRMPDVAVSALAHLGVAVDPAWGLDGRPVQQPRPDAFDALRDRLKPPVDETGVGAGVIGFTHTPPDGWSVDNTRMGGGGVTEWRGWSFTTDEFWTKTQRDQERELNLRARNVFAVADGDEWSDKSVTGTFDSTLVSPAYEVTGGAPATLTYTTYYRQESPQQGQVLVSYDGKEPVVIKTYTADTPSVVETVRLQVPAGARTAQVRFRYTGGNNWYWVIDGVGIKPS
>NZ_CP040916.1|WP_030682074.1|3568949_3569729_-|HAD-family-hydrolase
MAERKPIESWLTDMDGVLIHEGVPIPGADSFIKKLRESGKPFLVLTNNSIYTARDLQARLTRMGLEVPVENIWTSALATAKFLDDQRPGGTAYVIGEAGLTTALHDIGYVLTDHDPDYVVLGETRTYSFEAMTKAVRLINDGARFICTNPDETGPSTEGPLPATGAVAALITKATGKKPYFAGKPNPLMMRTGLNAIGAHSETSAMIGDRMDTDVLAGLEAGMETFLVLTGLTSRADIDQYPFRPSKVVDSIADLVDRV
>NZ_CP040916.1|WP_144003622.1|3568329_3568869_-|hypothetical-protein
MRICSLAVRGAGGLVLAGALAGAPGPAAAHDQDQVRAQVTPAAAVPGGQVEVRVAGCRGTTGAAGSGAFAKDAGLTGSGGGTLTGSARLRAGISGTYEITVTCDGHPHQGVGTVRAGAARATPQAPVRAGGGGTADLRPVAAVAEEAGPGTRHAVVGLVLAGAAAVAVALRSVRRRRSD
>NZ_CP040916.1|WP_144003630.1|3578462_3579176_-|hypothetical-protein
MRLRCRLAAGVTAVAAVLVPAAAGSAEAAPRAVPRAACSSPASADFPVGARIRQGPAVYYAGGGYGRWSLRLVNTTGGACEHIHPVVVLVDRKGKLRAEQVQLEFRAGGRWRAVAFEGAGRGENVGVLDDGAGGFTVGPGEPVNVPVRLAFTSGAVSDRVVASAAVVQRRGEDGDWVGESDDYPFDVVGDGGSWPSPGELARTGPSTLLGLGATAATLLLTGVALMTASRRLSARGR
>NZ_CP040916.1|WP_144003631.1|3579377_3580526_-|ROK-family-protein
MNRADSGTTGPTGANLRALRGHNAAVVLELLRGAGGEGVSRLELAARAGLTPQAVSKIVARLRGDGLVADAGRRASTGGKPATALRLVPEAGGAVGVHLERDALVAVVVDLAGAVVAERRVGVDFAAGVEAVVDLVAREVRGLVGAAGAALGPTGLLGVGVALPGPLDHIQGVLHRVTGFPGWDGFPLRDALAARLGLPVVVDKDTNAAALGIALGGGGAESFAYLHLGTGLGAGLVLGGGLYRGPRTGAGEFGHQVVLLDGPVCECGDRGCLEALCLAAVARGDLDGAARLLGTGAGNLVSLLDIDLVLLGGRTVAAAEDLFVRGVGDVVAARSRREGARGGVGVGMAPGGERGVADGAAQLVLAPLFGRADVAPPARGTG
>NZ_CP040916.1|WP_144003632.1|3580582_3581668_+|Gfo/Idh/MocA-family-oxidoreductase
MTEGTNDLRVGLIGYGLAGSVFHAPLIAATDSLVLDTVVTSNPERQAEATTAYGSRTAASADELWDRADELDLVVIASPNKTHVPLATAALKAGLPVVVDKPLAGTATDARDLAALADERGLLLSVFQNRRWDNDFRTLRKLLAAGELGDVWRFESRFERWRPQPKGGWRESGDPEEIGGLLYDLGSHVVDQALVLFGPAARVYAEADVRRPGARADDDTFIAITHAGGVRSHLYVSATAAQLGPRFRVLGSAAGYVKYGLDPQEAALREGRRPGDGDAEGPWGAEPECMWGRVGSGESPLTGGGRPEPTLPGDYPAYYAAVAAALRGEGDNPVTAHEAAAALDVLEAAHRSARDGVAVAL
>NZ_CP040916.1|WP_144003633.1|3581664_3582150_+|heme-degrading-domain-containing-protein
MTTRPTEPAAPSLEEIEEQERRLTLPRFTHEDAWALGCLLVELARERRAPVTIDIRRGGQQLFHAALPGSSPDNDAWIDRKRRVVERYGCSSYLVGSRFRAKGTTFEDSSRLDPDRYAAHGGAFPIGVEGVGVIGTVTVSGLPQVADHALVVEALERFTAS
>NZ_CP040916.1|WP_144003634.1|3582168_3583803_-|choice-of-anchor-A-family-protein
MRRKSSAYLAVAVTVAAATVLGGLAGQGVADPLPGGLGPCKGDACPGTYPEVNNGPVAGRDENINVFVGEDMLVREAAAEAEGKVVVLGDFDMNKRAGASQIYNVGVAGVGSRVPPPNGSDFLTTGGDLTVATGQRLLAEEGSVSGRVVYEGTASGTVVPPAVQEAGAADPYAALPGQLTAASQCYAYDNGAKRATTGEVTYTSTGTTFTGDGTSKLQVFDVDFDLASSSGGQQGITFAGIPADATVLVNLYGTAREINTYVGGFPDGLRERLLWNFPDATDVQFNGTAQFAGSVLVGSAGSTSTVRMPGMNGRFFTVGSLTHTSGAGGGQEFHAYPFNGDLPTCTSPSPSPSPSESESPSPSPSPSDSDGPSPSPSPSDSDGPSPSPSPSDSDGPSPSPSPSDSDGPSPSPSPSDSDGPSPSPSDSDGPSPSPSPSDSDGPSPSPSDSDGPSPSPSDSDGPSPSPSDSDGPSPSPSDSDGPSPSPSPTDSPTHPHPTKSPDEMAHTGASSGELALVGGIAAALLAAGVTVVVTVRRRRAGEFE
>NZ_CP040916.1|WP_144003635.1|3583926_3584784_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRVGTAGAERPALLDAGGTLRDLSGVVGDIDGALLADAAALARVRAAADAGDLPVLDAAGLRIGPPLARIGKVVCIGLNYHDHAVEAGAEPPAEPVVFLKAADTVVGPNDTVLVPRGSVKTDWEVELAVVIGRTARCVDSCEEALAHVAGYAVAHDVSEREFQIERGGTWDKGKNCETFNPLGPWLVTADEVPDPQALSLRLWVNGELKQDGTTARQIFPVAEVVRYVSRFMTLYPGDVINTGTPAGVALGQPEPKPYLRAGDVVELEIDGLGRQRQELKDA
>NZ_CP040916.1|WP_144003636.1|3584900_3585665_-|membrane-protein-insertase-YidC
MSFIADLVARLADLLEPLFHGSAMAAAIVLVTACVRLLIHPLSRAAARGQKARAKLNPQIAELRKKHGKNPEKLQKAVLELHRKENVSPLAGCLPGLFQLPVFFLLYHLFSSSDIGGKANALLDHKLLAAPLGGRWADALGDGGVLGGAGLVYLVLFALVAAVATFNYRRTKRQLAGAPLPAAQGGEQMPGAQAMAAMTKFMPLMSFMTLFSVAVVPLAAALYVVTSTTWSAVERAVLYRNMPQGAAGAMATAM
>NZ_CP040916.1|WP_144323539.1|3585761_3586073_-|hypothetical-protein
MVKRWGTALRPAVLLFVLLVEAVLADTGSLVGAVAFAATAAAGSALALCSLLAARSAPAVPRTRVRTAIRDRERRTAFLPQRDPDARGRTRPRAPGRPLLTAA
>NZ_CP040916.1|WP_144003637.1|3586130_3586661_-|helix-turn-helix-transcriptional-regulator
MALGKDYAAQECSIARALEVVGERWTLLVVRDALYGVRRYNDFLVHLGIPRAVLAARLQTLTDAGVLEKRPLADAPRRHEYVVTERGRALWPALRALGAWGRDAFADTAPLRYFRHARCGTELGAAGECPVCGLLVPVGDVEMLPGPGLDPEPSDPVSRALFAPRRLLQPVVTDPV
>NZ_CP040916.1|WP_144003638.1|3586812_3588219_+|MFS-transporter
MPRTATAAVTASSAAPVRAASPARTLALTSAATFMALMTYTAPMVTLPETAAALGTSLSAQAWLLNGTPLGLAALLLVAGSLADDHGRRRIFLCGTYALGVTTALGGLATSTWMFTLARVVQGAASAAVLAASLGLIAQAYPAGPGRIRATGVWGAFVSGGIALSPVVSGALATLTNWRLPYAVMAVATLAVGVLGPRALTESRAPRPGRPDLAGALTFGLALVALLAALTLGRDGWLRLPVGALLLAAAVLLASFTYVERRTATPMLDLGLLRRPLFLASSAGGLFTGLSVIALFSYLPTVLQQTLGLSAMGTGWLFMLWAGTGFLVALQARRLGGLLSARAQLAAGFLLHAVAAVTMLGAAAGGSWPRLLPGLLLSGAGSGLLNAALPLLAVESVPPGRAAMGSGAGNTARYIGSAAGVALMIAVSTASGSSPAALAHGADVGLLVSAGLGVLAALTVLTLRERRR

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Crispr_ID: NZ_CP040916_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_6

3801585-3801689

Orphan

Consensus_repeat	Method
CGGCTTCCCGGTCCGTTCCGATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_6

>merge|NZ_CP040916|6|3801585-3801689|CRISPRCasFinder
CGGCTTCCCGGTCCGTTCCGATTTCCTCGGTGCTTTCCGGCCTTTCGGCCTTCCGGCGGTTCCGACTTTATCAGATCTTCTCGGCTTCCCGATCCGTTCCGATTT

>NZ_CP040916|6|6|3801585-3801689|CRISPRCasFinder
CGGCTTCCCGGTCCGTTCCGATTT	CCTCGGTGCTTTCCGGCCTTTCGGCCTTCCGGCGGTTCCGACTTTATCAGATCTTCT
CGGCTTCCCGATCCGTTCCGATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144003792.1\|3813016_3814381_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|236557
NZ_CP040916.1\|WP_144003789.1\|3810102_3811254_-\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|185085
NZ_CP040916.1\|WP_144003778.1\|3790325_3791675_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370818
NZ_CP040916.1\|WP_144003784.1\|3803079_3804066_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|224628
NZ_CP040916.1\|WP_144003788.1\|3809031_3809964_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP040916.1\|WP_016640737.1\|3788141_3788819_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040916.1\|WP_144003787.1\|3806814_3808875_+\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|224218
NZ_CP040916.1\|WP_144003779.1\|3792428_3793718_+\|DUF4350-domain-containing-protein	unknown	unknown	gnl\|CDD\|379527
NZ_CP040916.1\|WP_144323555.1\|3784116_3785868_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237447
NZ_CP040916.1\|WP_144003776.1\|3783003_3783921_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP040916.1\|WP_144323556.1\|3788835_3789942_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP040916.1\|WP_144003790.1\|3811373_3812528_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|378434
NZ_CP040916.1\|WP_144323557.1\|3791685_3792432_+\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261
NZ_CP040916.1\|WP_144003780.1\|3793714_3794698_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|223786
NZ_CP040916.1\|WP_144003786.1\|3804974_3806432_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
NZ_CP040916.1\|WP_144003791.1\|3812612_3812789_-\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
NZ_CP040916.1\|WP_144003785.1\|3804075_3804690_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144003777.1\|3785968_3788140_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP040916.1\|WP_144003783.1\|3801964_3802972_-\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|376676
NZ_CP040916.1\|WP_144003781.1\|3794697_3796008_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144003792.1\|3813016_3814381_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|236557	PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.	0
NZ_CP040916.1\|WP_144003789.1\|3810102_3811254_-\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|185085	PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional.	4.74396e-112
NZ_CP040916.1\|WP_144003778.1\|3790325_3791675_+\|hypothetical-protein	gnl\|CDD\|370818	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase. Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase.	1.98743e-07
NZ_CP040916.1\|WP_144003784.1\|3803079_3804066_+\|RDD-family-protein	gnl\|CDD\|224628	COG1714, COG1714, Predicted membrane protein/domain [Function unknown].	3.92732e-19
NZ_CP040916.1\|WP_144003788.1\|3809031_3809964_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	7.31274e-40
NZ_CP040916.1\|WP_016640737.1\|3788141_3788819_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.72876e-87
NZ_CP040916.1\|WP_144003787.1\|3806814_3808875_+\|PTS-transporter-subunit-EIIA	gnl\|CDD\|224218	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism].	1.17008e-123
NZ_CP040916.1\|WP_144003779.1\|3792428_3793718_+\|DUF4350-domain-containing-protein	gnl\|CDD\|379527	pfam14258, DUF4350, Domain of unknown function (DUF4350). This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length.	7.36971e-08
NZ_CP040916.1\|WP_144323555.1\|3784116_3785868_-\|hypothetical-protein	gnl\|CDD\|237447	PRK13613, PRK13613, lipoprotein LpqB; Provisional.	0
NZ_CP040916.1\|WP_144003776.1\|3783003_3783921_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	2.61309e-24
NZ_CP040916.1\|WP_144323556.1\|3788835_3789942_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	4.22188e-122
NZ_CP040916.1\|WP_144003790.1\|3811373_3812528_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|378434	pfam10432, bact-PGI_C, Bacterial phospho-glucose isomerase C-terminal SIS domain. This is the C-terminal SIS domain of a bacterial phospho-glucose isomerase EC:5.3.1.9 protein which is similar to eukaryote homologs to the extent that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This domain contributes a good proportion of the active catalytic site residues. This PGI uses the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate. It is associated with family SIS, pfam01380.	1.12942e-21
NZ_CP040916.1\|WP_144323557.1\|3791685_3792432_+\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	4.1451e-08
NZ_CP040916.1\|WP_144003780.1\|3793714_3794698_+\|AAA-domain-containing-protein	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.66117e-103
NZ_CP040916.1\|WP_144003786.1\|3804974_3806432_-\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NZ_CP040916.1\|WP_144003791.1\|3812612_3812789_-\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	8.39977e-14
NZ_CP040916.1\|WP_144003777.1\|3785968_3788140_-\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.18583e-56
NZ_CP040916.1\|WP_144003783.1\|3801964_3802972_-\|stage-II-sporulation-protein-M	gnl\|CDD\|376676	pfam01944, SpoIIM, Stage II sporulation protein M. SpoIIM is on e of four stage II sporulation proteins that is necessary for the forespore inside the mother-cell to be properly internalized through the breakdown of peptidoglycans trapped between the membranes of the septum separating the forespore and the mother-cell. The four proteins working in sequence are SpoIIB, pfam05036, SpoIIM, SpoIIP, pfam07454, and finally SpoIID, pfam08486. D, M and P are in a complex with each other and the complex assembles in a hierarchical manner such that M, which serves as a membrane anchor, recruits P to the septum and P, in turn, recruits D to the septum.	5.03367e-42
NZ_CP040916.1\|WP_144003781.1\|3794697_3796008_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.0196e-47

>NZ_CP040916.1|WP_144003781.1|3794697_3796008_+|DUF58-domain-containing-protein
MAPTGRAALLAALGSLPVGLLEPSWTGILAVNAPLALACACDYALAAPVRRLGLTRSGDTTVRLGEPADVQLTVTNPTKRPLRADVRDAWPPSSWQPGTEVAASRHRLDVPSGERRRLTTRLRPTRRGDHRADRVTIRSYGPLGLFTRQGGHRVPWALRVLPPFASRKHLPSKLARLRELDGRTSVLIRGQGTEFDSLREYVPGDDTRSIDWRATARQSAVAVRTWRPERDRHILLVLDTGRTSAGRVGDAPRLDSSMDAALLLAALASRAGDRVDLLAYDRRVRALVQGKAAGDVLPSLVSALATLEPELVETDARGLTATALRSAPRSSLIVLLTSLDTAPIEEGLLPVLPRLTQRHTVLVASVADPHIAKMAASRGSAEAVYDAAAAAQAQAERRRTAEQLIRHGVTVVDATPDDLAPALADAYLSLKAAGRL
>NZ_CP040916.1|WP_144003780.1|3793714_3794698_+|AAA-domain-containing-protein
MMDPTTDNAGSSDRARSSLEALRTEISKAVVGQDPAVTGLVVALLCRGHVLLEGVPGVAKTLLVRALAASLELDTKRVQFTPDLMPSDVTGSLVYDARSTEFSFQPGPVFTNLLLADEINRTPPKTQSSLLEAMEERQVTVDGTPRPLPDPFLVAATQNPVEYEGTYPLPEAQLDRFLLKLTVPLPAREDEIAVLQRHAEGFNPRDLRAAGVRPVATAADLEAARSAVAKTAVSPEIAAYVVDVCRATRESPSLTLGVSPRGATALLSTARAWAWLTGRDYVIPDDVKALALPTLRHRVQLRPEAEMEGVTADSVITAILNHVPVPR
>NZ_CP040916.1|WP_144003779.1|3792428_3793718_+|DUF4350-domain-containing-protein
MTGPASPANAPGASEDAPPQTAATPTEPPGHTSQPAGTSLAPTPRQLWTRTRGIALALVVLLAAGIAIAAVRSGAQHGRLDPRSADPYGSRAVAELLDDRGVSTRVVTTTEEARSAVGPDTTLLVADPDVLTERQQSRLHAATERSGGRTVLVAPHTLSVSTLAPGVTADSARSLDSTLSPGCSLPAARRAGTADVGGIRYETIAPGADSCYSSDGLPSLLRLPSTTASGDTQGDTVVLGAPDILYNDRLDEHGNASLALQLLGSRPHLVWYLPSLADDAVDDSADEDFFDLIPSGWLWGTLQLTVAAVLAALWRARRLGPLVPEKLPVAIRASEAVEGRARLYRKADARDRAAAALRSATRTRLAPLVGVPTARAHSPEALLPALTSRLRAPGRDPHPLLFGPPPGDDAGLIALADQLDALESEVRSS
>NZ_CP040916.1|WP_144323557.1|3791685_3792432_+|DUF4129-domain-containing-protein
MAGAVLSRLGTAVPSSLPGFGTAPSLPRAGDEPPVTVPRDPAREAAESELSKPAYHENDPGLFQRALNRFWEWVGDLLNAASGAAPGGGVGLVVIVLAVVAVVAALWWRLGTPRRGPALSAALFDDRPRSAAAHRATAEAHAAQGHWNQAVQERMRAVVRSLEERALLDPRPGRTADEAAAEAGRTLPAHADELRAAAREFDDVTYGGRSADAAAYHRVARLDQTLERAKPVLTTAGVTPTSSPGATG
>NZ_CP040916.1|WP_144003778.1|3790325_3791675_+|hypothetical-protein
MNDTPGWASPGSAPSDGHDSGDQESKAPQDQPSGPSSKWSKEQPPPAQWSAPGTPGPGQTPPPPAPPGQGAGGGQGWGGSQGWGGPSGSPGGGQGGPGGPGGPGGPYRGWGAWQGPPAAAKPGVIPLRPLAVGEILDGAVSTMRTYWRTVLGISLTVAVVTELVVILLQGLVLNDSADTDALDDPSATVGEVTRALGATLAGSGVVLVITLLGTIVATALLTMVTSRAVLGRSVTTAEAWRDSRPMLPKLLGLTLLLPLIAVGIVAVGTLPGVLIAAFGPSDTGITLAVLGGIGAGIVAIWLMVRLSLSSPALMLEKQGVKKSMSRSAKLVDRSWWRVFGIQLLAAVIANVISSIIVIPFTVIAGALSGDSVSNLLDSGTGDVGWTFLIVSGIGQVIGSMLTFPINAGVTVLLYIDQRIRREALDLELARAAGVPGHGDSDTPGSTPGS
>NZ_CP040916.1|WP_144323556.1|3788835_3789942_-|S-methyl-5-thioribose-1-phosphate-isomerase
MPTIRWDEPPEGPVLVLLDQTRLPGEETELVCTDAPALVQAIRALAVRGAPVLGIAGAYGVALAAARGFDVDEAAEALAAARPTAVNLAYGVRRAQAAYRGAVAGGADQRDAASAALAAARALHREDAEASARMAVHGLALLDELLPGGGHRVLTHCNTGALVSGGEGTAFAVALAAHRAGRLRRLWVDETRPLLQGARLTAYEAARNGMPYTLLTDNAAGSLFAAGEVDAVLIGADRIAADGSVANKVGSYPLAVLARYHHVPFVVVAPVTTVDPETPDGASIEVEQRASHEVTEVTAPFVPVAGAGVEAGGGIPVAPLGTQAYNPAFDVTPPELVTAIVTEEGVVSPVTAEALAELCARSRQVTIS
>NZ_CP040916.1|WP_016640737.1|3788141_3788819_-|response-regulator-transcription-factor
MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIEVCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEPAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGYRHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYKAGPS
>NZ_CP040916.1|WP_144003777.1|3785968_3788140_-|HAMP-domain-containing-protein
MSKDSSAPAPGDPGARPGRTVRPPRRGSPFGALVDSGLMLQGGVQGSPVLRLFTRWVRRPLLPVMRLWRRNIQLRVVVTTLLMSLGVVLLLGFVVMSSVSNGLLKAKVNASQSQADGGFKVAQEKANSARPSSPQGDGADGPTAQNAAVWMSELAEQLASGGQNAFYVVTLSSNTGDVGSVRGPRASGGVDPIQSVPEEVREKVGDGTLAYQSNTRINFIDHRESQAGLVIGKQLSDLNGDSYQLYYLFPLTQEEESMRLVRGTLATAGLFVVVLLGAIAWLVVRQVVTPVRMAAGIAERLSAGRLQERMKVTGEDDIARLGEAFNKMAQNLQLKIQQLEELSRMQRRFVSDVSHELRTPLTTVRMAADVIHEARVDFDPVTARSAELLADQLDRFESLLADLLEISRFDAGAAALEAEPIDLREVVRRVVGGAEPLAERKGTRIRVLGDQQPVVAEADARRVERVLRNLVVNAVEHGEGQDVVVRLAAAGGAVAVAVRDYGVGLKPGEATRVFSRFWRADPARARTTGGTGLGLSIALEDARLHGGWLQAWGEPGGGSQFRLTLPRTADEVLRGSPIPLEPDDSRRHRDRDAAGLPRGGGGKRATVPHQSQEQAPVPVPAKAPIAPRLAQAAALDVDPTALPGNGARVVPRQPLIPGDERTGEPRGDVPGPGTDRDGASADQNDEPGAGSGGGPDTGGNGRPGTGRNGRPGADEEEGASRAR
>NZ_CP040916.1|WP_144323555.1|3784116_3785868_-|hypothetical-protein
MPDGGNLKKVDASQRPDSQSQVRVYAIPPSENARAVDIVQGFLEALTSDDPDFTIARKYLTKDASAAWDPEHSTTVLADGPNTVADNLGNDSGGGRTYSLTGRQVAMVNKQHAYVPDEKSYAQTVHLSQQSGQNGRVWRIDRLPKGIVLGESDFERNYEAVNKYYFAEPGAGTRGGGPKALVADPIYVRQRIDPLTETVKSLLDGPTHWLGPVVNSRFDTGTRLAPDAKSLAPDDKNKLVVPLSGRGRVDQERCTEMAAQLLFTLQDLASSGVEQVELQREGGSQLCVLGKDRAGTVASPRSTNRPSYQYFVDDKQRLVRMPGNAGSNAKPEPVSGPFGQPEEELQSVAVSRNEVRAAGVSADGHMLYTASLVGGSLGGPELRSRGKSPDQGLSTPSWDGRGDLWVADRDRKRPRLLWLDQGTGEPVQVGVSGLDGRIEAVRVAADGVRIALLVKKGDKTSLRIGRVERSGGKGEQPEISVVELREAAPQMEEVTAMSWAGPSRLVVVGRESGGVQQMRYVQCDGSARAGATLPGLTGVKEIAASEDETQPLLAHSDDGIVRLPSGAQWQTVGKDGTGPVYPG
>NZ_CP040916.1|WP_144003776.1|3783003_3783921_-|ComF-family-protein
MRGWWQDLTDLVLPAECEGCGMPRAALCARCRAALCGAAPRRVRPVPEPRGLPVVHAAAAYQEAVRAVLLAHKERGALALVGPLGEALAGAVRASLTYGDEGVRGAQGARGTTAEGAGAVPVLLVPVPSAGRAVRARGHDPVRRIALAAAGELRRLGVPARVLGALRQRRPVADQAGLNSRERRANLSGALGTVPGAGPLLRGAGHVVVVDDLMTTGASLAEAVRALGGVDGVQGEGDDQEHRTGRHQARNGAENQTRNQPSRGEENGAAGVLVNALVVGAKGAAKMVSAAVVAASPDSFEINRN
>NZ_CP040916.1|WP_144003783.1|3801964_3802972_-|stage-II-sporulation-protein-M
MDLDVFVSAHRAEWDRLDALVRRQRRLSGPEVDELVTLYQRTATHLSLIQSSAPDPQLTGRLTQLVARARSAVTGTRRASWRDATRFLTHGFPAAVYRSQRWWVPTALLSVALAAVIGWWVGTHPEVQSSIAAPSELRDMTRPGGEYETYYSSHPATSFAAQVWTNNAQAAAMCLVLGAFLCVPVIWILFQNMLNVGVGLGLMSSADRLDTFLGLLLPHGLLELTAVFVAAGTGLRLGWTLIDPGPRTRRAAMAEEGRAALGMAIGLALVLLVSGAIEGFVTPSGLPTWARIAIGIAAELAFLAYVYVLGGRAAREGETGDIDESERSAAVPTAA
>NZ_CP040916.1|WP_144003784.1|3803079_3804066_+|RDD-family-protein
MSELVTGEAVALELRPAKLPSRALALLIDMVVAWSVYLAVTLGLLAATASLDDAAAAAIAVATFVLVLVGVPIAIETLSHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAVGVVEILLMFGVIACIASLVSARGRRLGDVFAGTLVVRERVPTAQTGYVPAPPPWLAGQFSELDLSGVPDGLWLAIRQYLTRMGQLDPQVGWGMAERLAADVVARTGAPAPVGVPPAAFLAAVVHERQTREAQRTFGGAPAEGGAPYASPYAPGAPSAPVPYPPQAPHAPQPSAGQWAPPSAGASEAEAPRAVPHVVPGSGPRDEPQRPSTGFVPPA
>NZ_CP040916.1|WP_144003785.1|3804075_3804690_-|hypothetical-protein
MPRGRYSLHDPHDHTPLGEEHFQCAPGPSGWRYVAQRTTPSGDHAGSVDLTLDELGRPIRLELHASGWQVRAAALDGVTWVRTDATGAHATENNAPAHAFTGASPAFLVATARLLRLTPDSPATRVRLVAFTDPVLAPRTLDQSWTLLTREAHATDNGPLTVDEYQVTALDTGEQHVVHLSGDVVLAAPGIELEHLESPPSAFP
>NZ_CP040916.1|WP_144003786.1|3804974_3806432_-|adenosylhomocysteinase
MTTAVNGKDFKVADLSLAEFGRKEITLAEHEMPGLMSIRKEFAASQPLAGSRIMGSLHMTVQTAVLIETLVALGAEVRWVSCNIFSTQDHAAAAVAVGPNGTPDNPQGIPVFAWKGETLEEYWWCTEQALTWPNSPTGGPNMILDDGGDATMLVHLGVQYEKDGKVPGVETAENDEHRVILQVLNRTLGENPQKWTQVASEIRGVTEETTTGVHRLYEMQRDGSLLFPAINVNDAVTKSKFDNKYGCRHSLIDGINRATDVLIGGKTAVVFGYGDVGKGCAESLRGQGARVIVTEVDPICALQAAMDGYQVTTLDEVVETADIFITTTGNKDIIMAADMAKMKHQAIVGNIGHFDNEIDMAGLAKIEGIVKDEVKPQVHTWTFADGKVLIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTKQDEYPIGVYTLPKHLDEKVARLHLDALGVKLTTLRPEQASYIGVEVEGPYKPDHYRY
>NZ_CP040916.1|WP_144003787.1|3806814_3808875_+|PTS-transporter-subunit-EIIA
MTSPAAPPTGASGQKRLRLLAVTACPTGIAHTYMAAEKLQQAADRLGIDMKVETQGSIGAENVLSDNDVKQADGIIIAADKDVDRDRFAGKRVLSVGVSEGISRPEQLIEQVRTAPVQGGGDAGSGGTAPAGGGGGGGRERSVAYKALMNGVSYMIPFVVVGGLLIAISLSLGGHTDPKGGLVIPDDSFWMHVNQIGVIGFTLMVPILSGYIAYAIGDRPALVPGMIGGWIANTGELYDSKAGAGFIGAIVTGFLAGYLVLWIKKVKVPKFVQPIMPIIVIPILATSALGLFFIYVIGKPIAWVFEHLTDWLSGMTGTSAILLGAILGLMIAFDMGGPVNKTAFLFGAGLIATGNQTVMGMCAAAIPVMPLGQGLATLIRKRLYSEQERETGLAALFMGLFGISEGAIPFAAARPAQVIPANMLGGAVAGAIAGLASVKDAVPHGGPIVAVLGAVGGVPMFFVAVAAGTVVTALATVSLVDVSERRRRGVPVGEPVLVGVGAGAAGAAGTAVAARPRAQESAVPATPPAGEAAAPEVLSGYLTRQTVEVRLAARDKEAAIREMAGLLARTGKVTDVEELVRVALAREAQGTTGLGEEIAIPHAKTDAVTSPVVGFARSAEGIEWGSLDGTKAKLIFMISVPEAAAGDEHLRILAMLSRKLMDEGFRGRLVAAADEAAVLEVLREVQ
>NZ_CP040916.1|WP_144003788.1|3809031_3809964_-|cation-diffusion-facilitator-family-transporter
MSASGGTKAIVAALAANLAIAVAKFVAFLFSGSSSMLAESVHSVADSGNQGLLLLGGKKAQREATPQHPFGYGRERYIYAFLVSIVLFSVGGMFALYEGYEKIKHPHEIEHWYWPVGVLVFAIVAESFSFRTAIKESNPLRGNLSWKEFVRRAKAPELPVVLLEDLGALVGLVLALGGVGLALATGDGVWDGVGTLCIGALLILIAIVLAAETKSLLLGESAGIEEVEKIEQALVDGDTVTGVIHMRTLHLGPEELLVAAKIAVQHDDTAREVADAINAAESRIREAVPIARVIYLEPDIRRESATATGD
>NZ_CP040916.1|WP_144003789.1|3810102_3811254_-|mannose-6-phosphate-isomerase,-class-I
MDRLTNTIRPYAWGSTTAIAGLLGVEPTGEPQAEMWMGAHPGAPSRTERGPLNEVIDEDPRGELGPRAVDKFGPRLPFLLKILAAGAPLSVQVHPDLEQAREGYEDEEARGVPLGAPHRNYKDANHKPELICALTPFDGLCGFRPPAEAADLIEGLGVDSLKPYVDLLRAKPEDAALREVLTAVLTADREDMARAVAEAAAAAERLGGAYAPYADAARHFPGDPGVIAAMLLNHVRLNPGEALYLGAGVPHAYLNGMGVEIMANSDNVLRCGLTPKHVDVPELLRVVRFEASDPGVLRPEASADGEEVYETPIDEFRLSRYVLPEGDARHDLTAETPQILLCVAGEVRVGDLSLGPGRSVFVPAGERTDVSGSGTLFRATVVA
>NZ_CP040916.1|WP_144003790.1|3811373_3812528_-|mannose-6-phosphate-isomerase
MLDESLLDAPDELARADLRDLLRGAAEAGARVRTAVRHATESGVMELKPDGRPRAVLIAGPGTAAAGVADLVGALVGTGCPVIRLTPTGVAPAAGALRWTLPGWAGPVDLLLIATPDGTEPGLALLAEQSYRRGCTVAAVAPARSPLAEGVSGSHGLTVPMALSPQPSADAGADTEAPAAAPGTLWSLLVPLLALLDRTGLVAAPVETLQKVADRLDGVAERCGPAIATYSNPAKTLATELAEALPLIWTEGETAGPVGRRFAAALAELAGHPALTAELPEALPAHASLLARGLTGSTDGDDFFRDRVDDPAPLRARAVLLRDRPADAGGLTAAPAARELAQSHDIALSELDPEDGEDLERLAELIALTDFAAVYLALASGGRS
>NZ_CP040916.1|WP_144003791.1|3812612_3812789_-|Trm112-family-protein
MPLEAGLLEILACPACHAPLKETDAELLCTAEGTDCGLAYPIRDGIPVLLVDEARRPE
>NZ_CP040916.1|WP_144003792.1|3813016_3814381_-|phosphomannomutase/phosphoglucomutase
MAADLSQIVKAYDVRGVVPDQWDEVLAEQFGAAFARVTGADAIVVGHDMRPSSPGLSGAFARGAAALGVDVTQIGLCSTDQLYYASGALDLPGAMFTASHNPAQYNGIKMCRAGAAPVGQDTGLADIRALVERWAEEGAPAPAPTPGTLTRRDTLKDYAAYLRSLVDLSVIRPLKVVVDAGNGMGGHTVPTVFEGLPLTLVPMYFELDGTFPHHEANPLDPANIVDLQERVREEGADLGIAFDGDADRCFVVDERGDPVSPSAITALVAARELAKHGGSGTVIHNLITSWTVPEVVRENGGTPVRTRVGHSFIKEEMAKSGAIFGGEHSAHYYFRDFWNADTGMLAALHVLAALGGQDGPLSALVEQYDRYAGSGEINSTVADQRDRLAAIKAAYEGQDGVTLDELDGLTITTADWWFNVRASNTEPLLRLNAEARDQQTMEKVRDAALAIIRA

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Crispr_ID: NZ_CP040916_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_7

5783686-5783824

Orphan

Consensus_repeat	Method
GTGGCTGGTCGCGCAGTTCCCCGCGCCCCTTCGGGGCGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_7

>merge|NZ_CP040916|7|5783686-5783824|CRISPRCasFinder
GTGGCTGGTCGCGCAGTTCCCCGCGCCCCTTCGGGGCGCTTTCCCCCGGGCGGGGTGTAAGGGGCGGAGCCCCTTCGCGTAGCGTCTGCGGGTTTGTTGTGGCTGGTCGCGCAGTTCCCCGCGCCCCTTTGGGGCGCTT

>NZ_CP040916|7|7|5783686-5783824|CRISPRCasFinder
GTGGCTGGTCGCGCAGTTCCCCGCGCCCCTTCGGGGCGCTT	TCCCCCGGGCGGGGTGTAAGGGGCGGAGCCCCTTCGCGTAGCGTCTGCGGGTTTGTT
GTGGCTGGTCGCGCAGTTCCCCGCGCCCCTTTGGGGCGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144320708.1\|5771072_5771759_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP040916.1\|WP_144320725.1\|5792912_5793899_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP040916.1\|WP_144320712.1\|5776849_5778922_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP040916.1\|WP_144320719.1\|5786634_5787054_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP040916.1\|WP_030668228.1\|5789834_5790059_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP040916.1\|WP_144320715.1\|5780550_5781963_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|234779
NZ_CP040916.1\|WP_144320709.1\|5771755_5772283_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP040916.1\|WP_144320713.1\|5778978_5779662_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP040916.1\|WP_144320711.1\|5775174_5776671_-\|catalase	unknown	unknown	gnl\|CDD\|163712
NZ_CP040916.1\|WP_144320724.1\|5791414_5792815_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP040916.1\|WP_144320716.1\|5782115_5783669_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238861
NZ_CP040916.1\|WP_144320721.1\|5788389_5788938_+\|DUF4245-family-protein	unknown	unknown	gnl\|CDD\|379430
NZ_CP040916.1\|WP_144320723.1\|5790068_5791277_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979
NZ_CP040916.1\|WP_144320710.1\|5772615_5775072_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP040916.1\|WP_144320714.1\|5779772_5780459_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|377233
NZ_CP040916.1\|WP_144320717.1\|5783904_5785569_-\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|237955
NZ_CP040916.1\|WP_144320722.1\|5789037_5789628_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP040916.1\|WP_161624892.1\|5768637_5771076_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669
NZ_CP040916.1\|WP_144320720.1\|5787194_5788229_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP040916.1\|WP_144320718.1\|5785778_5786453_+\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144320708.1\|5771072_5771759_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.97617e-94
NZ_CP040916.1\|WP_144320725.1\|5792912_5793899_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP040916.1\|WP_144320712.1\|5776849_5778922_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	8.59042e-55
NZ_CP040916.1\|WP_144320719.1\|5786634_5787054_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	3.58023e-20
NZ_CP040916.1\|WP_030668228.1\|5789834_5790059_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	5.90962e-18
NZ_CP040916.1\|WP_144320715.1\|5780550_5781963_-\|aspartate-ammonia-lyase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP040916.1\|WP_144320709.1\|5771755_5772283_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.73322e-16
NZ_CP040916.1\|WP_144320713.1\|5778978_5779662_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.52907e-20
NZ_CP040916.1\|WP_144320711.1\|5775174_5776671_-\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP040916.1\|WP_144320724.1\|5791414_5792815_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.20179e-36
NZ_CP040916.1\|WP_144320716.1\|5782115_5783669_+\|hypothetical-protein	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	5.41015e-27
NZ_CP040916.1\|WP_144320721.1\|5788389_5788938_+\|DUF4245-family-protein	gnl\|CDD\|379430	pfam14030, DUF4245, Protein of unknown function (DUF4245). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 188 and 235 amino acids in length.	2.78006e-52
NZ_CP040916.1\|WP_144320723.1\|5790068_5791277_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	4.01917e-159
NZ_CP040916.1\|WP_144320710.1\|5772615_5775072_+\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.91768e-144
NZ_CP040916.1\|WP_144320714.1\|5779772_5780459_-\|DUF402-domain-containing-protein	gnl\|CDD\|377233	pfam04167, DUF402, Protein of unknown function (DUF402). Family member FomD is a predicted protein from a fosfomycin biosynthesis gene cluster in Streptomyces wedmorensis. Its function is unknown.	2.88227e-18
NZ_CP040916.1\|WP_144320717.1\|5783904_5785569_-\|fumarate-hydratase	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
NZ_CP040916.1\|WP_144320722.1\|5789037_5789628_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	3.50893e-105
NZ_CP040916.1\|WP_161624892.1\|5768637_5771076_-\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.3848e-09
NZ_CP040916.1\|WP_144320720.1\|5787194_5788229_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP040916.1\|WP_144320718.1\|5785778_5786453_+\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	2.45523e-16

>NZ_CP040916.1|WP_144320716.1|5782115_5783669_+|hypothetical-protein
MKRTTRVRNGGAGRLRTTATVVTALTALLGGAVAAAPAHAAPAGPKGPAAAAPLPADLEKIRAAEATKLYGDAAERPLDERKSGLISLGDSEISGEGIGRYESGTDGPDNWCHRSPDAAIHRTGIPVDVTYNVACSGATTANVRIGGQRQYADELVQSDNLAIKARNTRIKAIMLVIGANDDLQFAPVMTDCVTRYLTLQGPCAPKYAGGWQARVDALVPKVEQTVRDLRTVMSQAGYSGSDYKLVVMGYPSPIGPDFRDNPNFPGKLACGGLGYDSDTQWGRDEAVPAFERGMRQAARSAGATYLDNSRLFHGHEVCTEDTWARGLYVELSNPFPPDSNSVRQSFHPNARGHAAFASCLTQLYDSGWTEGGCADPAGTGSAKLHKGGWDDAFKPLKNEGTGTCLDADASNSRNGTKVQGWDCTGNRNQTWWYDAERQSLRTGLTHDRCVDVPEGAYKEGAAVTLWNCHGGGNQKFERRSGTLRPAADTGLCLTLAGPKEPLRLQKCAGAASQRFAA
>NZ_CP040916.1|WP_144320715.1|5780550_5781963_-|aspartate-ammonia-lyase
MSGGAGNDGSGEYRIEHDSMGEVRVPAGAKWRAQTQRAVENFPISGQRIERAHIAALAEIKAAAAQVNARLGVLDKDVADAIAGAAREVADGRWDDHFPVDVFQTGSGTSSNMNTNEVLATLATERLGRDVHPNDHVNASQSSNDVFPSSIHIAATAAVTGDLIPALEHLAAALERKAAEFADVVKSGRTHLMDATPVTLGQEFGGYAAQVRYGVERLRSSLPRLAELPLGGTAVGTGINTPPGFSAAVIAEVARATGLPLTEARDHFEAQGARDGIVETSGQLRTIAVGLTKISNDLRWMASGPRTGLAEISLPDLQPGSSIMPGKVNPVIPEAVLMVAAQVTGNDATVATAGAAGNFELNVMLPVIAKNVLESVRLLANASRLLADRTVDGVVAHRERAREYAESSPSVVTPLNKYIGYEEAAKVAKRALAERRTIREVVLDSGYVDRGDLTLEQLDEALDVLRMTRP
>NZ_CP040916.1|WP_144320714.1|5779772_5780459_-|DUF402-domain-containing-protein
MTDHHDGTTAAAGVPRWSPGAHILWRYRANGGDGIHICRPVTVVEDTEDLLAVWLAPGTECVRPVLADGTSVHEEPLATRYTKPRTTRRGHWFGTGVLKLARPREPWSVWLFWEPGWRFKNWYVNLEEPRTRWSGGVDSEDHFLDLSVYPDGTWRWHDEDEFEQARRAGLMDEDRAAAVRAAGREAVAAIEAWGTPFADGWENWRPDASWRIPALPGDWDRTPARVSS
>NZ_CP040916.1|WP_144320713.1|5778978_5779662_-|methyltransferase-domain-containing-protein
MNVSEEYGARGGRDRTGQAEAFDAIGAAYDVAFPHKEGQLAAGKRLVAELPAGSRVLDVGCGTGLPTARQLTDAGHTVLGVDLSAGMLDLARGNVPPPAAEFRRLDLADLRIDGEGPGTVGQFDGIACFFALLMLPREEIPSALRLLRSLLRPGGLLALSMVEADLDDAAIPFLGHVIRVSGYLRDELRQVVRDAGFDIAHEESYAYAPASTDAPPEHQLFLHCRRG
>NZ_CP040916.1|WP_144320712.1|5776849_5778922_-|SpoIIE-family-protein-phosphatase
MTEHLSPYEGRKAPVARPPAPADPRGALLRTPEPEVRGSAGVNAMPAQARTGEQDAGSEHAQSSTAATNGPGGHRPRPAPESVPGQPHTGAGESRPAAELSSAATGGPPGGPERRTGLPRPPGPAAMRRDGDRLRFVGAATRRIARGIDLDEIVMGLCRATVPTFSDAILVYLRDPLPVGDERPVGPLLLRLRRTDRIPEDHDTDGGTLPALQVQSDLATAAELCEVIGESALDHVLRGVRPVFADSPAALGALPQLLGEGRSAPGGQRAILAPLRGRRRVIGAAVFLRRPDRHAFEADDLLVAAQLATHSALGIDKAVLYGREAYIADELQRTMLPETLPRATGVRLASRYLPAAETARVGGDWYDAIPLPGSRVALVVGDVMGHSMTSAAIMGQLRTTAQTLAGLDLPPQEVLHHLDEQAQRLGSDRMATCLYAVYDPVSHRITIANAGHPPPVLLHLGGRAEVLRVPPGAPIGVGGVDFEAVELDAPAGATLLLYTDGLVESRLRDVWTGIEQLRERLAATAQLTGPDHPPPLEALCDEVLDMLGPGDRDDDIALLAARFDGIAPSDVAYWFLEPEDATPSRARRLARSALERWGLTDLNDAVELLVSEVVTNAVRYATRPITLRLLRTDVLRCEVGDDVPQLPRLRQARATDEGGRGLYLVNKLARRWGATRLSTGKVVWFELNQT
>NZ_CP040916.1|WP_144320711.1|5775174_5776671_-|catalase
MSEAPRKAPSSTADTASTTTDNAGIPVESDEHSLTVDANGPILLQDHYLIEKMAQFNRERVPERVVHAKGSGAYGTFEVTNDVSQFTKADLFQPGKRTRMLARFSTVAGEQGSPDTWRDPRGFALKFYTEHGNYDLVGNNTPVFFVRDPQKFQDFIRSQKRTLDSAVRDHDMQWDFWTLSPESAHMVTWLMGDRGIPKTYRHMNGYSSHTYMWINGGGEKFWVKYHLKTDQGIDFLTQDEADDLAGKDGDLHRRDLFESIKRGDHPSWTVKVQVMPFDDAPDYRFNPFDLTKVWPHGDYPLIEVGRMTLHENPEDFFVHIEQAAFEPSSMVPGIGPSPDKMLLGRLFSYPDTHRYRIGPNYQQLPPNRPRSAVRSYAKDGPMRYEPAHVARPYAPNSYGGPAAPAQESVDPAGWRTAGEMVREAYKLHREDDDFGQPGTMVREVLDDAARERLVSNISGHLLDGVSRPVLDRALRYWRSVDKDLGDKVAAEVNGAGPG
>NZ_CP040916.1|WP_144320710.1|5772615_5775072_+|penicillin-binding-protein
MGRAEERKARQRGARRAARGRPATGPAVAGTSADAGTSPSEGAPAGTGSGSGSGGSGGGTKARGAGGGKPKRTGIRRFFTWKKLLGYFFGVILLGMLGFVILYLVVDIPKGNALAKKQSNIIKYSDGTVLYRDGEVNREIVDLDEIPKEVQRTFVAAENKSFYKDTGIDFKGTARGVLNTLSGKGKQGGSTITQQYVKNYYLTQEQTVTRKLKELVISLKVDREKSKDDILAGYINTSYYGRGAYGIQAAAQAYYGVDASKLKVEQGAYLAALLQAPSSYDYTTATPTGKKLVKERWNYVLNNMVEEGWLDSGKRDGLKFPYPHAPKAAPGMKGQTGYLVQFANEIVQRQLMEQGYTKSEAEAQLKLGGYTITLNIDRKKQRELEKAVDRKLNDRLDPKKNKADARVQAGAVSVDPKTGAIVAMYGGRDFLKHFTNNATRTDYQPASTFKPLILAAALEEGATTQDGKPITANTIYSGRSERPVKGSDIAFAPPNEDDRSYGPVTVQTAMNKSVNSVFAQMGVDVKMDKVLETAGKLGMGTKGVPAVPAQTLGTMGASPLEMAGVYATLDNHGKQVTPRLVKSVEHKDRAVDVPDAIGDRVISRGAADSVTSVLTGVVDDGTARTSVRDAPTRKGQQVAGKTGTSDDNKSAWFVGYTPKLVTAVGLFGEQPKDDGEVKRGTQVSMRGAGGKPRVDGGSFPAEIWAAYTFNATGSRTKFNLDTDMGAAVAPPPDPTTQAPPTPTTRPTRPDDEDKPSTKPPSTKPPTTEPPSTKPPTTPPPTKPTTEPPTTPTTPTSPTFGIPDDPDDRRADRSSREDE
>NZ_CP040916.1|WP_144320709.1|5771755_5772283_-|PadR-family-transcriptional-regulator
MSIGHTLLGLLESGPRHGYDLKRAFDEKFGHDKPLHYGQVYSTMSRLLKNGLVEVDGIEAGDGPERKRYAITEAGVTDVQRWLATPEKPEPYLQSTLYTKVVLALLTHRDAADILDTQRSEHLRMMRILTDRKRKGDLADQLICDHALFHLEADLRWLELTSARLGRLAKEVLPA
>NZ_CP040916.1|WP_144320708.1|5771072_5771759_-|ATP-binding-cassette-domain-containing-protein
MTPAGSLLAAHGLRKAYGPTTALDDAEFSIHPGEVVAVMGPSGSGKSTLLHCLAGIVRPDAGEISYNGRSLTSMTDTGLSALRRSEFGFVFQFGQLVPELTCVENVALPLRLNGAKRKDAERTALSWMERLEVDDVRAKRPGEVSGGQGQRVAVARALATSPRVVFADEPTGALDSLNGERVMELLTDAARSTNAAVVLVTHETRVAAYSDREIVVRDGKSRDMERLV
>NZ_CP040916.1|WP_161624892.1|5768637_5771076_-|ABC-transporter-permease
MSTTRTKPAVAPAPAPASGSTGVRAWLRDLAMGLRFAVGGGRQGWTRTILTAVGVGLGVALLLGAASVPDMLNKRDARSTARTPLAEMNGKQVEPGDTSVLSINVSTDFRDSEVMGRMLRADGAHPALPPGLDALPKAGEMLVSPALRDLMNSSGGKLLKERFSQYRQVGTIGDAGLTHPKELYYYLGSDSLIKSDGAYRSQSFGYKEPAEPLDPLLVVLIVLICVVLLTPVVIFIGTAVRFGGERRDQRLAALRLVGADRRAVRRIAAGEALCGALLGLVAGAVFFLLARQLVGMVDIWKVSAFPSDLVPLPGLAALILVAVPVSAVVVTLVSLRAVTIEPLGVVRSSAPRKRRLWWRLLLPVVGLGILLGQDRISTQSTTADVHVYVIAVGATLALVGLATLLPWLVEAAVAKLRGGPVPWQLATRRLQLSSGTAARAVSGITVAVAGAVALQMLFASMHDDFNTVTDNDPRRAQLSVHSSQASGALAQRMIDDFRATKGVKDVMGSVSTYVVRPGKLPKGQESDGYRPTAELRVGTCETLRELAHVKSCANGDTFIVHSGDQESNGQVDMVARPGKPVDLNSDSWFSYDGEPHGKHAPWTLPKSTRTVQARPDPVGDKYYGIFATPRAVDVDRMADASTNAMVQIDPSVPDAEEYVRNTAARMDPLVRVMTIRMMERDKQYASVQKGLQAGAIATMMLIAASMLVSMLEQLRERKRLLAALTAFGTRRTSMGWSVLWQTAIPVALGLALAVAGGLALGAVMCRMIAKQVTDWLVFLPLAGAGAVLVAVVTALSLPPLWRMMRPDGLRTE
>NZ_CP040916.1|WP_144320717.1|5783904_5785569_-|fumarate-hydratase
MPEFAYSDLLPLGEDTTPYRLVTAEGVSTFEADGRTFLKVEPEALRKLAEEAIHDIQHFLRPAHLAQLRRIVDDPEASANDKFVALDLLKNANIAAAGVLPMCQDTGTAIVMGKRGQNVLTRGGDDEALSRGIYDAYKNLNLRYSQMAPLTMWEERNTGSNLPAQIELYATDGGAYKFLFMAKGGGSANKSFLYQETKAVLNEASMMKFLEEKIRSLGTAACPPYHLAIVVGGTSAEYALKTAKYASAHYLDEIPAEGSELGHGFRDKDLEEKVFELTQRIGIGAQFGGKYFCHDVRVVRLPRHGASCPVAIAVSCSADRQAVAKITAEGVFLEQLETDPARFLPDTEDTHLDEGEVVKIDLNQPMDDVLAELTKYPVKTRLSLTGPLVVARDIAHAKIKERLDAGEEMPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVEQFQAAGGSKVMLAKGNRSQQVTDACAAHGGFYLGSIGGPAARLAQDCIKKVEVVEYEELGMEAVWKIEVEDFPAFVVVDDKGNDFFQNPAPEPTFTTIPVRGPGLA
>NZ_CP040916.1|WP_144320718.1|5785778_5786453_+|DUF1707-domain-containing-protein
MDLEKRSPTPPTTAPSHLRASDADRERAADVLADALATGRIDPQEHSERLDGVYGAKTFAEIEPHLADLPDPEGPGGGGSFTQAPARPSPGAIPESADETLYGVFSDAIRKGRWHPGRRTHAYAVFGDVVIDLSEAVFRHRQIAVKGFAVFGSVKVRVPENVSLRGRGTAVFGTFEVDTLESAERDAPVVFVEGFTVFGDLTARPRRGKLIRDLRGLLRKRQEG
>NZ_CP040916.1|WP_144320719.1|5786634_5787054_+|WhiB-family-transcriptional-regulator
MLQPTHQSLQVAAVPAAGASPARAQPSAWGRVPVRERDQDTPWHSDAVCRRDEAGLFFAPSKEPTAARLSREEAAKRVCARCPVMVECREHALLQPEPYGVWGGLTAAERRVVLARRRRRDLELKKATRTATGAVAAAG
>NZ_CP040916.1|WP_144320720.1|5787194_5788229_-|class-II-fructose-bisphosphatase
MTEHHHLPSELEVSPEAPDRNLALELVRVTEAAAMAAGRWVGRGDKNGADGAAVRAMRTLVHTVSMNGVVVIGEGEKDEAPMLFNGERIGDGTGAEVDIAVDPIDGTTLTAKGMPNAIAVLAAADRGTMFDPSAVFYMDKLVTGPEAADYVDINAPVSVNIRRVAKAKKSAPEDVTVVILDRPRHEGIVKEIRETGARIKFISDGDVAGSVMAVREGTGVDLLMGVGGTPEGIISACAIKCLGGVIQGKLWPKDDEEKQRALDAGHDLDRTLTTNDLVSGENVFFVATGITDGELLRGVRYGAEMASTQSLVMRSKSGTIRKIDSDHRLAKLRAYSAIDFDRAK
>NZ_CP040916.1|WP_144320721.1|5788389_5788938_+|DUF4245-family-protein
MAGRTGKQTVRNMLLSMAVIGMVVAAIYVFVPHDESEDPVERVDYRVELLTARRAAAYPVAAPKGLPASWKPTSVRYNGAAHDSWHLGFLDPAGEYVAVKQSTGKPSEFIDEATQEARKTDATEKIAGKTWQRYKGTRYDALVLQDKGATTVVLGTASFDQLSTMAESLEMKRTPVEPVKAS
>NZ_CP040916.1|WP_144320722.1|5789037_5789628_-|malonic-semialdehyde-reductase
MSLVLDPAAQDLLFREARTANTFTDEPVTDEQIQAIYDLVKYGPTAFNQSPLRVTLVRSQEARERLVQHMAEGNRPKTLTAPLVAILSADNEFHEELPALFPHFPQAKDVFFAERPAREQAAGLNAALQAAYFIVGIRAAGLAAGPMTGLDFAGVQKEFLDDDHTPLMVVNIGKPGEDAWFPRSPRLEYDQVITTV
>NZ_CP040916.1|WP_030668228.1|5789834_5790059_-|exodeoxyribonuclease-VII-small-subunit
MTSKTDETAGTAGALGYEQARDELIEVVRRLEAGGTSLEESLALWERGEELAAVCRRWLEGARARLDAALADED
>NZ_CP040916.1|WP_144320723.1|5790068_5791277_-|exodeoxyribonuclease-VII-large-subunit
MGLNTSADTPLPVGEVSRLIGGWIDRLGAVWVEGQITQLSRRPGAGVVFMTLRDPSHDISVSVTCYRQVFDAVADVVSEGARVVVHAKPEWYAPRGQLSLRAAEIRPVGVGELLARLEQLKKTLAGEGLFAADRKRPLPFLPQLIGLVCGRASAAERDVLENARHRWPAVRFEVRNVPVQGVHAVPQVVQAVKELDELAEVDVIIVARGGGSVEDLLPFSDEQLVRTVAACRTPVVSAIGHEPDNPLLDHVADLRASTPTDAAKKVVPDVGEELERIAFLRERARRGVTALLEREERGLAHALARPCMEQPHRMVEEREEQITAYADRARRTLGHLLDRAESELAHTHARVVALSPKATLQRGYAVLQKEDGAVVRAADEVTGGEALRARVAEGEFPVRVDI
>NZ_CP040916.1|WP_144320724.1|5791414_5792815_-|amino-acid-permease
MSAHSTNARPPSDGDRGPAAPAPEGEGLRRTLGFRDLVVYGLLFIAPMAPVGVFGTLDAKSHGAVALVYVVATVAMAFTAFSYAQMVRVVPQAGSVFAYARAGLGNGAGFVAGWMAMLDYLLIPAVAYLFSGIAMHELVPEVSRWVWTAIAVVVTTALNLWGVRPAARVGFAILALEIVVLVVFVVSAIVVLARDGAERGWLSPLSGDGTQGAFALSAVVGAVSVAVLSYLGFDAIASFAEEVTGGSAKVARAVLFCLALTGVLFVAQTYLAALLTPVSSADLAAHPDDQGSAFYSAVDASVGSWLHDLVAVSKAVGAAFAALAGQAAAGRLLFAMSRGRRLPRLLSRTESGTPRVALLCAATVTLVAAVWAARRDDGMNHLVSVVDIGALTAFALLHASVIGWFVVRRRGDTVSWWRHVLIPVLGTAIVIAVIKEASGTAQVVGGVWLAVGLVVLGVQGVRRGDG
>NZ_CP040916.1|WP_144320725.1|5792912_5793899_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MTATPGSRRVLLAAPRGYCAGVDRAVIAVEKALEQYGAPIYVRHEIVHNKYVVQTLEKKGAIFVDQVDEVPEGSIVMFSAHGVAPTVHEEAAERKLATIDATCPLVTKVHKEAVRFAKEDFDILLIGHEGHEEVIGTSGEAPDHITLVDGPDDVANVEVRDPDKVVWLSQTTLSVDETMETVDALKGKFPNLLSPPSDDICYATQNRQIAVKKLAEDADLVIVVGSKNSSNSIRMVEVALEAGVPASHLVDNAGEIDEAWLEGVTTVGLTSGASVPDVLVDGVLQWLAERGYADVETVKTADESITFSLPKELRRDLRTEAAELSGKK

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Crispr_ID: NZ_CP040916_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_8

6011383-6011469

Orphan

Consensus_repeat	Method
CCCGATGCTGGTCGGCTCGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_8

>merge|NZ_CP040916|8|6011383-6011469|CRISPRCasFinder
CCCGATGCTGGTCGGCTCGATGCCCGGTCGATGCGGTGCCTGGCTGGTCTGGTGCCCGGTCGGCCCGATGGCTGGTCGGCTCGATGC

>NZ_CP040916|8|8|6011383-6011469|CRISPRCasFinder
CCCGATGCTGGTCGGCTCGATGC	CCGGTCGATGCGGTGCCTGGCTGGTCTGGTGCCCGGTCGGC
CCGATGGCTGGTCGGCTCGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144320885.1\|6010473_6010683_+\|HTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP040916.1\|WP_144320881.1\|6005145_6006090_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_CP040916.1\|WP_144320880.1\|6004384_6005146_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP040916.1\|WP_144320882.1\|6006388_6007354_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270225
NZ_CP040916.1\|WP_144320894.1\|6018148_6021922_-\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	unknown	unknown	gnl\|CDD\|237030
NZ_CP040916.1\|WP_144320891.1\|6015083_6015725_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040916.1\|WP_144320888.1\|6012836_6013802_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP040916.1\|WP_030687631.1\|6022200_6023271_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040916.1\|WP_144320893.1\|6016736_6017537_-\|23S-ribosomal-RNA-methyltransferase-Erm	unknown	unknown	gnl\|CDD\|128898
NZ_CP040916.1\|WP_144320887.1\|6011623_6012835_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559
NZ_CP040916.1\|WP_144320879.1\|6002666_6003296_-\|CGNR-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|378696
NZ_CP040916.1\|WP_144320890.1\|6014116_6014968_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144320892.1\|6015830_6016763_+\|TIGR03620-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274681
NZ_CP040916.1\|WP_144320884.1\|6009398_6010361_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176227
NZ_CP040916.1\|WP_003961784.1\|6017847_6018030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144323759.1\|6003497_6004187_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP040916.1\|WP_016641312.1\|6023441_6024182_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040916.1\|WP_144320883.1\|6007954_6009175_+\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP040916.1\|WP_144320886.1\|6010682_6011237_+\|peptidase	unknown	unknown	gnl\|CDD\|214361
NZ_CP040916.1\|WP_144320878.1\|6002301_6002763_+\|nickel-type-superoxide-dismutase-maturation-protease	unknown	unknown	gnl\|CDD\|274282

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144320885.1\|6010473_6010683_+\|HTH-domain-containing-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	0.000533212
NZ_CP040916.1\|WP_144320881.1\|6005145_6006090_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.02559e-78
NZ_CP040916.1\|WP_144320880.1\|6004384_6005146_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.37052e-157
NZ_CP040916.1\|WP_144320882.1\|6006388_6007354_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270225	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.29921e-82
NZ_CP040916.1\|WP_144320894.1\|6018148_6021922_-\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0
NZ_CP040916.1\|WP_144320891.1\|6015083_6015725_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.06897e-12
NZ_CP040916.1\|WP_144320888.1\|6012836_6013802_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	1.4233e-09
NZ_CP040916.1\|WP_030687631.1\|6022200_6023271_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.13437e-49
NZ_CP040916.1\|WP_016641312.1\|6023441_6024182_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.06582e-83
NZ_CP040916.1\|WP_144320887.1\|6011623_6012835_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.2146e-20
NZ_CP040916.1\|WP_144320879.1\|6002666_6003296_-\|CGNR-zinc-finger-domain-containing-protein	gnl\|CDD\|378696	pfam11706, zf-CGNR, CGNR zinc finger. This family consists of a C-terminal zinc finger domain. It seems likely to be DNA-binding given the conservation of many positively charged residues. The domain is named after a highly conserved motif found in many members of the family.	2.2034e-13
NZ_CP040916.1\|WP_144320893.1\|6016736_6017537_-\|23S-ribosomal-RNA-methyltransferase-Erm	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	6.49305e-50
NZ_CP040916.1\|WP_144320892.1\|6015830_6016763_+\|TIGR03620-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274681	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria. [Unknown function, Enzymes of unknown specificity].	6.37862e-88
NZ_CP040916.1\|WP_144320884.1\|6009398_6010361_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	4.90981e-104
NZ_CP040916.1\|WP_144323759.1\|6003497_6004187_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.82442e-15
NZ_CP040916.1\|WP_144320883.1\|6007954_6009175_+\|NADP-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	3.7078e-176
NZ_CP040916.1\|WP_144320886.1\|6010682_6011237_+\|peptidase	gnl\|CDD\|214361	CHL00095, clpC, Clp protease ATP binding subunit.	5.11853e-06
NZ_CP040916.1\|WP_144320878.1\|6002301_6002763_+\|nickel-type-superoxide-dismutase-maturation-protease	gnl\|CDD\|274282	TIGR02754, putative_signal_peptidase, nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad. [Cellular processes, Detoxification, Protein fate, Protein modification and repair].	8.66998e-23

>NZ_CP040916.1|WP_144320886.1|6010682_6011237_+|peptidase
MFERFTSGARSVVTGAVEHAERVGADSVDEGHLLLALLDRQGGRASFALAALGADRRREEITDALAEARRRGGLTQADTEALAGLGIDVEEIVARVEETHGAGALAGAGAGRGRKGAGSWFGHRPFSREAKDTLVRSLRIATARRERTIGDEHILLALTTRPGIVAEVLGDRGVTREALDRVLM
>NZ_CP040916.1|WP_144320885.1|6010473_6010683_+|HTH-domain-containing-protein
MTEARDLAERAGDRDPRVGLRAVTALRRLVEQLEAVQVRSARQQGWSWQEIAAELGVSRQAVHKKYGRQ
>NZ_CP040916.1|WP_144320884.1|6009398_6010361_+|zinc-binding-dehydrogenase
MFAAYAARIDPAHPLNGLELGDRPAPEPRPGWSTVNVKAASLNHHDLWSLRGVGLPEDKLPMILGCDAAGVDEDGNDVVLHSVIGQSGHGVGPHERRTILTEKYQGTFAEQVSVPTWNVLPKPAGLSFAEAACLPTAWLTAYRMLFTNAGVRPGDSVLVQGAGGGVATAAIVLGRAAGLKVFATSRDEAKRKRAVELGAVEALPAGARLPQRVDAVIETVGAATWSHSIKALRPGGTLVISGATSGDRPSHAELTRVFFLELRIVGSTMGTKDELEDLLAFCANTGVRPVIDEVLPLDRAREGFERLEAGDQFGKIVLTV
>NZ_CP040916.1|WP_144320883.1|6007954_6009175_+|NADP-dependent-malic-enzyme
MAAEIVNPRSDSGTSTGHEGAEEPFDPAFALHRGGKMAVQATVPVRDKDDLSLAYTPGVAKVCSAIAEQPDLVHDYTWKSNVVAVVTDGTAVLGLGDIGAEASLPVMEGKAILFKQFGGVDAVPIALGTTDTDEIIETVVRLAPSFGGVNLEDISAPRCFEIERGLQERLDIPVFHDDQHGTAVVTLAALRNAARLTDRTLGDLRAVISGAGAAGVAIAKFLLEAGLGDVAVADRKGIVSRDRDDLTPVKRELAELTNKAGLSGSLESALAGADVFIGVSGGTVPEAAVASMAPNSFVFAMANPNPEVHPDVAHKYAAVVATGRSDYPNQINNVLAFPGIFAGALQVRASRITEGMKIAAADALAGVVGDELSAAYVIPSPFDERVAPAVTAAVAAAARAEGVARR
>NZ_CP040916.1|WP_144320882.1|6006388_6007354_-|transporter-substrate-binding-domain-containing-protein
MTAGTTCRTTAAKSAKSRIVAVGAIAVAGSLLLTGCGDQRDNKKGDGGKKVVDAPLSDMLPTNVRNKGVIKVGSDIAYPPVEFKDKSGDTVGIDPDIAEAMGKQLGVEFEFDNGTFDTLLGGLRSKRYDIAMSAMTDTKNRQEGIDEETGKKVGKGVDFVDYFTAGVSIYTKKGEDQGIKTWSDLCGKKIVVQRGTVSHDMAKAESKKCKGGKKISIESFDNDQQAQTRLRSGGADAGSSDFPVAAYAVKTSGGGKDFQLVGDQVEAAPYGIAISKDNAKLRDAIKAALNAIIANGQYEKIIKEWGVEAGAVKEAKVNGGK
>NZ_CP040916.1|WP_144320881.1|6005145_6006090_-|ABC-transporter-permease-subunit
MTTDITKSGSPGPKDEPPRSAPEAIKAVPVRHYGRYVAGVLALGVLGAIIYAFSQGDINWNAIPDNFFDERILKGVRETLILTVLSMLIGVVGGVLLSVMRLSKNPVTSSIAWFYIWFFRGTPVLVQLFVWFNLGFVFEYINLGPIYQDEWSDFMTPFLTALLGLGLNEAAYMAEICRAGLLSVDEGQTEASQALGMSHGKTLRRIIIPQAMRVIVPPTGNEVINMLKTTSLVAAVQYYELLRYAQDIGTSSGATVEALLLAATWYLIMTSILSVGQFYLERYYARGSSRSLPDTPWQKIKANMLSLGNRSGVR
>NZ_CP040916.1|WP_144320880.1|6004384_6005146_-|ATP-binding-cassette-domain-containing-protein
MTAMVKAENVHKSFGHVEVLKGIDLEVKSGEVFCLIGPSGSGKSTFLRCINHLEKVNAGRLYVDGELVGYRQKGDKLYELKDSEVAMKRRDIGMVFQRFNLFPHMTALENVMEAPVQVKGKAKAAARERAGQLLERVGLADKAKNYPSQLSGGQQQRVAIARALAMDPKLMLFDEPTSALDPELVGDVLDVMRDLAESGMTMVVVTHEMGFAREVGDSLVFMDGGVVVESGNPRDVLTNPQHDRTKSFLSKVL
>NZ_CP040916.1|WP_144323759.1|6003497_6004187_+|methyltransferase-domain-containing-protein
MPDREERFRVMLDMVEALVGPEPRVLDLACGTGTITARLLERFPKATSVGVDLDPALLAIAEGTFAGDDRVTFVSADLKDPAWASQLPHDSYDAVLTATALHWLFSEPLAALYHRLGGLVRDGGVFLNADHMPDPTTPRLNAADREQRHARQAAARAAGVLDWADWWALAAQDPVLAGPTAKRFEIYGEHADGDTPPAEWHARTLREAGFAEARTVWSSPSDAMVLGLK
>NZ_CP040916.1|WP_144320879.1|6002666_6003296_-|CGNR-zinc-finger-domain-containing-protein
MELAYYSDYAVRLVNTEEPERNRDTLTSVEAVRDLFGANQQAARRATDSDVTRFRSVRGRLRAVFEAADGGDETLAVDLLNSLLLEFPVSPQISGHDYRDDDGRPLWHMHLADHPSNATAGYAAIAAMGLAFHLTEHGVDRLGLCEAAPCRNAYLDTSTNRSRRYCSDRCATRANVAAYRARKRLESERSASTGRTAEKVQETSAVRDS
>NZ_CP040916.1|WP_144320878.1|6002301_6002763_+|nickel-type-superoxide-dismutase-maturation-protease
MPEMTADGRETRVPFQLIEVDGPSMVPTLNPGDWMLVQHGARVRPGDVVILRHPLQQDLLVVKRAVERRDGGWWVLGDNPYNTGGDSNVYGVVPEDLVLARVRGRFRPLGRFREEREALGRRQLSLTALVSWTFSAVRPVLADRSLSKRLRAR
>NZ_CP040916.1|WP_144320887.1|6011623_6012835_-|helix-turn-helix-transcriptional-regulator
MPPVFAHGRLRLYLLKLLDEAPRHGYEVIRLLEERFQGLYAPSAGTVYPRLAKLEAEGLVTHTTEGGRKVYSITDAGRAELASRSGELADLELEIRESVAELAAEIRDGVQGAAGELRREMRAAAQQARTAGRSGTGSHSGLGDFLDGSWTDSEGWRQAKEEVRRARQEWKEQARRAKDESRRAREEAQRARRQARDAREQAQEEAREEWQRMTQRVQEHVQDHFARGDWPTGVREGLAELAKEVGEFGRGFGKDFVDFGFGDTDRKRAKGTEHDVRPERDAAPERDAASGRDAASAPGGTSGTSETPHTGKASDAGEASAPGPVFTPPRAQVPVEYLPDWAQEEATGGDPARDLERLLDHLRDDVRDAARDHGVSPEQLREARRHLSETAAHVTAILRRPKP
>NZ_CP040916.1|WP_144320888.1|6012836_6013802_-|DUF4097-family-beta-strand-repeat-protein
MPKWSVDEPRKLTFDAPVRRLHVRVVNGTVNVVGTDDDTARLEVSEIAGPPLVVTHSDDTLSVVYEDLPWKGLLGWLTPKGARRSAVVSVAVPAGTHVEVGAVGAGAVVTGVEGRAEVRSITGDTTLVGLTGPVRAETVSGAVEAQGITGELRFNSVSGDLTVFDGAGSSVRAESVSGSMILDLDPVGGPADIGLSSISGEIAIRLPRPGHAQVEADTTSGSVSSDFEELRISGLWGSKKITGRLGSGRGQLKATTVTGSIALLRKPDVEEDRYETDEPPRDSAAADTPSPAPPADAVTETPTGAPEADTATGAPTHKKVL
>NZ_CP040916.1|WP_144320890.1|6014116_6014968_+|hypothetical-protein
MSSESTPARATDSADAASSPGALLLCRARPDSVETVAQLLRERMLLAPAGPEWSVLVPEGKPWLEGGEPVDSVLAGWATALAVGSSWPVLALWWDADRSGCTLAAGFRRTVGYVWLANGTPVGEDEAMRTFAARLGLDPVLDMQALDPLTRPDSDADARARLRGLIAVLTRVGVDLPPGLNPGEPADRLREVARVLDGVRSVEWSGWRDAVRAELDAVESGPLGPWLRGPRARALAGAQLAAGVPLLAWSLRRRGGGGWAVAGLVLVVHGALGFAYDRARERE
>NZ_CP040916.1|WP_144320891.1|6015083_6015725_-|TetR-family-transcriptional-regulator
MTEPPGRATATPATATPTATTPHGRAPRADAVRNRERIVAVAREAFAEAGPEASLNDIARRAGVGPGTLYRNFSGRSELLAAVLKDRIDTLCGRADDLLTADSPYDALAEWLHAFLAHARVNQGLGGTLLLEQLEESGALGADCHERVHDAVAALLTRAQRTGAARPDLSPSDLLHLVVGIALSTACTGGSTPEDPRRPERLLGLVLDTVRAR
>NZ_CP040916.1|WP_144320892.1|6015830_6016763_+|TIGR03620-family-F420-dependent-LLM-class-oxidoreductase
MRGLQGPDGLGRVGVWTFAFEGQPVGRVREAAAEIEELGYGALWYGEAFGRDTVGQAWLLLSATRRLPVASGIASIAYREPLAMANAERTLGEAFPGRYVLGLGGHRVDDTVIEVDGYRVPARGKAVTTMRAYLDAMDAAPAHGPVPDPAPRRLLAALGPKMLGLAAERAGGAHTYFVSVEHTARARAALGPDAFLGVEQAVVLDTDRARARSVAEEHVAGYARVPHQAANLRRLGFGDEDLPPGGGPSRRLVDAIVAYGDADVLHARVREHLAAGADHVCVQVLTADGAFPLREWRELAPVLTAAPARP
>NZ_CP040916.1|WP_144320893.1|6016736_6017537_-|23S-ribosomal-RNA-methyltransferase-Erm
MRTHHTTPTYRHGRHELGQNFLTDRATIDAFVDLVARTQGPIVEIGTGDGALTLPLQGLGRGLTGIEIDARRAARLARRTHPSTTIVTADFLRCAMPSTPHVLVGNLPFHETTPMLRRILRTPAWTDAVLLVQWEVARRRAGVGGATLMTAQWWPWYAFTLARRVPAGAFRPRPNVDGGLLTIARRDRPLVDRAALKAYQDLVRRVFTGRGRGLPQIVATACPDLPRRGVREWLGRHGLGPARLPKDLTAPQWAELYALGAGGRRR
>NZ_CP040916.1|WP_003961784.1|6017847_6018030_-|hypothetical-protein
MYFTDRGIEELEKRRGEEEVTFEWLAEQLRTFVDLNPDFEVPVERLATWLARLDDEDEDE
>NZ_CP040916.1|WP_144320894.1|6018148_6021922_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit
MSPQSPSNSSTSTDQEAQGKNPAAAFGPNEWLVDEIYQQYLQDPNSVDRAWWDFFADYKPGVGASVAAPAKPAGDAAAGVASTTSPAPAAPAAQPPAAAKPAPAAKAPAPAAKPAAAPPAAAKPAAKAAPATEAPAGPEFVTLRGPSAAVAKNMNASLEVPTATSVRAVPVKLLFDNRIVINNHLKRARGGKISFTHLIGYAMVQAIKAMPSMNYSFAEKDGKPTLVKPEHVNFGLAIDLVKPNGDRQLVVAGIKKAETLNFFEFWQAYEDIVRRARDGKLGMDDFTGVTVSLTNPGGLGTVHSVPRLMPGQSVIMGVGSMDYPAEFQGTSQDTLNKLGISKVMTLTSTYDHRVIQGAASGEFLRIVANLLLGESGFYDEIFEALRIPYEPVRWFKDIDASHDDDVTKAARVFELIHSYRVRGHVMADTDPLEYKQRKHPDLDITEHGLTLWDLEREFAVGGFAGKSMMKLRDILGVLRDSYCRTTGIEFMHIQDPKQRKWLQDRIERPHAKPEREEQLRILRRLNAAEAFETFLQTKYVGQKRFSLEGGESVIPLLDAVIDSAAESRLDEVVIGMAHRGRLNVLANIVGKSYAQIFREFEGNLDPKSMHGSGDVKYHLGAEGTFTGLDGEQIKVSLVANPSHLEAVDPVLEGVARAKQDIINKGGTDFTVLPVALHGDAAFAGQGVVAETLNMSQLRGYRTGGTVHIVINNQVGFTAPPESARSSMYSTDVARMIEAPIFHVNGDDPEAVVRVARLAFEFRQAFNKDVVIDLICYRRRGHNETDNPSFTNPQMYSLIDKKRSVRKLYTESLIGRGDITLEEAEQALQDFQGQLEKVFTEVREATTTPAPAEVPTPQTEFPVAVDTAVSQEIVKRIAESQVNIPDRITVHPRLLPQLQRRTAMVEDGTIDWGMGETLAIGSLLMEGTPVRLAGQDSRRGTFGQRHGVLVDQTTGEDYTPLLYLSEDQARYNVYDSLLSEYAAMGFEYGYSLARPESLVMWEAQFGDFVNGAQTVVDEFISSAEQKWAQTSGVTLLLPHGYEGQGPDHSSARPERFLQLCAQNNMTVAMPTLPSNYFHLLRWQVHNPHHKPLVVFTPKSMLRLKAAASKTEEFTTGGFRPVIGDASVDPAAVRKVVFCAGKFYYDLEAERQKRGATDVAIIRIERLYPLAGAELQAEIAKHPNAEKYLWAQEEPANQGAWPFIALNLIDHLDLAVGADIPHGERLRRISRPHGSAPAVGSAKRHQAEQEQLVREVFEA
>NZ_CP040916.1|WP_030687631.1|6022200_6023271_-|HAMP-domain-containing-histidine-kinase
MSGPFGGLRPFSIKTKLGTLVVVSVFITTGLLMVAMKTETELRFITVFSVIATLLITQFVAHGLTAPLDEMNSVARAVSHGDYTRRVRGADRRDELGDVATTINRMADDLEAQDQQRKELVANVSHELRTPIAALRAVLENVVDGVSAADPETMRTALKQTERLGRLVDTLLDLSRLDNGVVPLKARRFEVWPYLSGVLKEANMVASARKGMPSGSGSHTRTDVHLHLDVSPPELTAHADAERLHQVVANLIDNAVKHSPPHGRVTVRARRGPYPESLDLEVLDEGPGIPQSEWHRVFERFNRGAHAGAPPGGDGGTGLGLAIARWAVDLHGGHIGVAESARGCRIQVSLPGLLEG
>NZ_CP040916.1|WP_016641312.1|6023441_6024182_-|response-regulator-transcription-factor
MEQTHTSHNSATAAMPGAQRRVLVVEDDPTIVDAIAARLRAEGFVVQTAADGPAAVDTAQAWQPDLLILDIMLPGFDGLEVCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERAALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLLAEVWDWADASGTRTVDSHIKALRRKIGAERIRTVHGVGYALETPTP

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Crispr_ID: NZ_CP040916_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_9

6524887-6524991

Orphan

Consensus_repeat	Method
AAATCGGAACGGATCGGGAAGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_9

>merge|NZ_CP040916|9|6524887-6524991|CRISPRCasFinder
AAATCGGAACGGATCGGGAAGCCGAGAAGATCTGATAAAGTCGGAACCGCCGGAAGGCCGAAAGGCCGGAAAGCACCGAGGAAATCGGAACGGACCGGGAAGCCG

>NZ_CP040916|9|9|6524887-6524991|CRISPRCasFinder
AAATCGGAACGGATCGGGAAGCCG	AGAAGATCTGATAAAGTCGGAACCGCCGGAAGGCCGAAAGGCCGGAAAGCACCGAGG
AAATCGGAACGGACCGGGAAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144321273.1\|6545203_6546703_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|223694
NZ_CP040916.1\|WP_144321270.1\|6540224_6540908_+\|response-regulator	unknown	unknown	gnl\|CDD\|381147
NZ_CP040916.1\|WP_144321274.1\|6547457_6548129_+\|nicotinamide-nucleotide-amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|234789
NZ_CP040916.1\|WP_144321264.1\|6522972_6524658_+\|RNase-J-family-beta-CASP-ribonuclease	unknown	unknown	gnl\|CDD\|223668
NZ_CP040916.1\|WP_144321263.1\|6521943_6522843_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP040916.1\|WP_144321261.1\|6520600_6521161_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144321257.1\|6515727_6517947_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NZ_CP040916.1\|WP_144321268.1\|6534171_6534354_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144321271.1\|6541133_6543920_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP040916.1\|WP_144321259.1\|6519384_6520137_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP040916.1\|WP_144321258.1\|6517943_6519323_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP040916.1\|WP_030688912.1\|6548238_6548613_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP040916.1\|WP_144321267.1\|6531492_6534111_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP040916.1\|WP_144321256.1\|6513201_6514830_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NZ_CP040916.1\|WP_030363216.1\|6515058_6515346_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP040916.1\|WP_144321272.1\|6544212_6545109_+\|DUF4115-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NZ_CP040916.1\|WP_144321269.1\|6534409_6539923_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|237951
NZ_CP040916.1\|WP_144321262.1\|6521305_6521545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144321266.1\|6530558_6531236_+\|DegT/DnrJ/EryC1/StrS-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_CP040916.1\|WP_144321260.1\|6520151_6520604_+\|tetratricopeptide-repeat-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144321273.1\|6545203_6546703_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	6.25772e-127
NZ_CP040916.1\|WP_144321270.1\|6540224_6540908_+\|response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.93639e-36
NZ_CP040916.1\|WP_144321274.1\|6547457_6548129_+\|nicotinamide-nucleotide-amidohydrolase-family-protein	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	2.86025e-49
NZ_CP040916.1\|WP_144321264.1\|6522972_6524658_+\|RNase-J-family-beta-CASP-ribonuclease	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP040916.1\|WP_144321263.1\|6521943_6522843_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	3.74545e-160
NZ_CP040916.1\|WP_144321257.1\|6515727_6517947_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_CP040916.1\|WP_144321271.1\|6541133_6543920_+\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	3.57582e-149
NZ_CP040916.1\|WP_144321259.1\|6519384_6520137_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	5.23511e-100
NZ_CP040916.1\|WP_144321258.1\|6517943_6519323_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.93161e-121
NZ_CP040916.1\|WP_144321267.1\|6531492_6534111_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.32324e-45
NZ_CP040916.1\|WP_144321256.1\|6513201_6514830_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	7.77552e-09
NZ_CP040916.1\|WP_030363216.1\|6515058_6515346_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.48337e-51
NZ_CP040916.1\|WP_144321272.1\|6544212_6545109_+\|DUF4115-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	1.60042e-20
NZ_CP040916.1\|WP_144321269.1\|6534409_6539923_+\|HAMP-domain-containing-protein	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	7.51144e-73
NZ_CP040916.1\|WP_030688912.1\|6548238_6548613_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	8.02742e-08
NZ_CP040916.1\|WP_144321266.1\|6530558_6531236_+\|DegT/DnrJ/EryC1/StrS-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	3.57826e-30

>NZ_CP040916.1|WP_144321264.1|6522972_6524658_+|RNase-J-family-beta-CASP-ribonuclease
MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGIDLILPDFTSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQEHRIRPYTLEVAEGDRERLGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLPLDRRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPEREISNVLRQVFAGARKRIIVASFASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPPGLVVDVKTLDDLPDHEVVLVCTGSQGEPMAALSRMANRDHQIRIVSGDTVILASSLIPGNENAVYRVINGLTRWGANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPHDRIVIAEDGVVVDLVEGKAKIVGKVQAGYVYVDGLSVGDVTEPALKDRRILGEEGIISVFVVVDSTTGKITGGPHIQARGSGIEDGTFGEVVPRIQEVLEKSAQDGVVEPHQLQQLIRRTLGKWVSDNYRRRPMILPVVVEV
>NZ_CP040916.1|WP_144321263.1|6521943_6522843_+|4-hydroxy-tetrahydrodipicolinate-synthase
MAPTSTPQTPFGRVLTAMVTPFTADGALDLDGAQQLAAHLVDAGNDGLIVNGTTGESPTTSDAEKNELVRAVLEAVGDRAHVVAGVGTNDTRHSIELARAAQDAGAHGLLTVTPYYNKPPQEGLYRHFTAIADATELPVMLYDIPGRSGVPINTETIVRLAEHPRIVANKDAKGDLGRASWAIARSGLAWYSGDDMLNLPLLSVGACGFVSVVGHVVTPELRALLEAHLNGDVQKATEIHQKLLPVFTGMFRTQGVITTKAALALQGRPAGPLRLPLVELSPEETAQLKIDLAAGGVQL
>NZ_CP040916.1|WP_144321262.1|6521305_6521545_-|hypothetical-protein
MFRRREPVPFAFIAEADKFRSNVTPPPRERATAGQVVGRTLIGLTVVAGLVGSLLFGMPAMSAGQSPAKTQQSEASDGR
>NZ_CP040916.1|WP_144321261.1|6520600_6521161_-|hypothetical-protein
MPLPFLTADRAFDDAAKDAALPFDDRDHWRRPYRPGPWRVAAAAVLLLLASYVLVAAVIIAFAGALAGAGICVGVAVLVICAAVRLLRVGTWVSAHGLRHVAFLRTRTVPWARVASVRTIQQPVRWLGLPRTVQGQALLLVRLDRPADERATLLTDRGADFLARRTAFDRAADTIEVWADEYRRTA
>NZ_CP040916.1|WP_144321260.1|6520151_6520604_+|tetratricopeptide-repeat-protein
MRAKITYAVTAAVLVVYFVLVGSRGVLLIQHGTVLTVTFGVAVLILPVIGVWFLWQNTRFVQRANRLAAELEAEGGLPVDELKRTPGGRIDRDSADEVFARRKAETEDTPDDWRCWFRLAIAYHDARDTPRARKAMQRAIALHEGRPLSA
>NZ_CP040916.1|WP_144321259.1|6519384_6520137_+|4-hydroxy-tetrahydrodipicolinate-reductase
MSKLRVAVIGAKGRIGSEAVRAVEAADDMELVAALGRGDKLEALVETGAQVVVELTTPGSVMGNLDFCVRHGIHAVVGTTGWTDERLAQLRTWLDASPETGVLIAPNFSIGAVLTMKFAQLAAVYFDSVEVVELHHPHKADAPSGTATRTAQLIAAARERAGSAPQPDATETALEGARGADVDGVRVHAVRLNGLLAHQEVLLGGEGETLTIRHDSLHHSSFMPGILLGARRVVETPGLTFGLEHFLDLD
>NZ_CP040916.1|WP_144321258.1|6517943_6519323_+|insulinase-family-protein
MTSRSSKATARTSSEARAVARTQTLIKGRNGIGTVRKTTLPGGLRVVTETLPSVRSATFGIWANVGSRDETPSLNGATHYLEHLLFKGTGKRSALDISSAIDAVGGEMNAFTAKEYTCYYARVLDTDLPLAIDVVCDMLTGSLIRQEDVDAERGVILEEIAMTEDDPGDCVHDLFAHTMLGDTPLGRPVLGTVDTINALTADRIRRFYKRHYDPTHLVVAAAGNVDHQKVVRQVRAAFEKAGTLTRTDATPIAPRAGLRRVRASGHVEVVDRKTEQAHVILGMPGLARTDERRWAMGVLNTALGGGMSSRLFQEVREKRGLAYSVYSYTSAFADAGLFGVYAGCRPSQVHDVLKICRDELDHVAEHGLTDDEVRRAIGQLAGSTVLGLEDSGAIMNRIGKSELCWGEQMSVDDMLARIAEVTPDEVREVARDILGQRPSLSAIGPLKDKQAARLHEAVA
>NZ_CP040916.1|WP_144321257.1|6515727_6517947_+|polyribonucleotide-nucleotidyltransferase
MENETHYAEAVIDNGTFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVVAINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATERTIELVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPEGEFPVFLDYEDDVLEALTAAVKPELTQALTIAGKQEREAELDRVKALAGEKLLPEFEGREKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLNGIPASVLAAALKQARDARLHILDVMMEAIDVPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLVPVVEGEEGSEDAKDDAAK
>NZ_CP040916.1|WP_030363216.1|6515058_6515346_+|30S-ribosomal-protein-S15
MSLDAATKKQIMTEFGQKEGDTGSPEVQVALLSRRISDLTEHLKTHKHDHHSRRGLLILVGQRRRLLQYLAKKDIQRFRALVDRLGIRRGAAGAK
>NZ_CP040916.1|WP_144321256.1|6513201_6514830_+|PQQ-binding-like-beta-propeller-repeat-protein
MSQGPPRSQFTQSVLAVDNARKQRRTRLLAGLAGLLALVLCAGGWMLWAAADDSEAGDQGAKAVQQAPDAIRDTVETAPSSPVGHLAVDYQEKGFAERFGRDASVRAPGTWATDRTLVRGVGGTLKGFAFGTSKEVWSTELGGPVCGTTRHVTADGRTAVLFQEPTKAPDDDKPKKDDDKKKGDKKGDKKDKKGSKKPKGKKHDKKRDDKNKKKGKGKKDRADAPAPAPCTRLALVDLDTGKKLWQVTLPDAEDASPTSTNVTMTRGTVTVAWSRGSVAYDMKGGRRLWQDTRPSVCGNAGLAGGNALLALRACGADADRTYRVQRLDPRTGKALWTYGVASGVQRVHLVSSEPAVVAVAVRGTGVDKLLALDDLGAYRSTVDMPEGRYIDDCFTARFGTVETCDAIVAERDRLFLATEPKDPEVNRIVSFDLATGKVVRKFDSRGRGTMYPLELSGGKLLAFRGSADGVAPDAVVSLDPESGRETPFLLFSVPDGAGPVKPGETDVLVEGGRVFIAPKELRAEPGEDAAGAAYGALGVEGA
>NZ_CP040916.1|WP_144321266.1|6530558_6531236_+|DegT/DnrJ/EryC1/StrS-aminotransferase
MGTEALLRAAGVGSGDEVVVPAYGSAAVAEAVVSVGAMPVFADIDPATYCLSVDAVDAVRTERTAAVVAVRRFGNQAAMPQMHALGQRHGMLVLEEGEQGATYDDVARRRTHAAYLTARLSGVHPPAGGENHSYQQYVVRVPGNGRPDRDAFARVLRAKGVDCRVPVKTPLHRTPQFWRDVDLPETERAVDETLALPVDAWLSRRDLQRIVSACNALGGLLQPAF
>NZ_CP040916.1|WP_144321267.1|6531492_6534111_-|SpoIIE-family-protein-phosphatase
MITARAAATFEPVGRSVATARSFVRDTLQGWGFSDIVDDAVVLTSELVTNAVVHAGTAADVQCLRTDDAVRIEVSDRYPEREIPLQNSPATMGSPDREGGRGLQLCAALATRWGVDYTPTHKQVWFQLDLPDRPVGTRTAGPTLPPDLLPITDGRVRVAVVQIDRAGAISAWNEDAEELFGYVAEQVTGKPLTDFAAWPHTPGTSTGIVDALQLSRWEGSYGIRDSGGRVIPVYASHLRVRDTDGEPSTVCLLVRDDERAVLQTPLRGPSPESGALSEPHAADPFEVFIGSPTPEDLDGLLQRTVERARDMLDGDSAFLLLATDDETELEVRASTGLPSARQRFARVPVEAGTGRYGSARMPAVHEDLTVVPDAVPLLKSTGMRSVVTVPLKVEGRLTGSLGVAAEAPNRYSNEEALRLQFAADRIALGIESARLGDLQRLRRGSLSFLVEASDLLAGTLDRDQTLALMAQMTVPTLATWCAVYTIADQASEPYLSYVLHEDEERIDGLKALLKKVDPPEPVPTPGARIWKAPSEAAHQSALRTSMRNLGLGEPVSVTASIGTSLSTASAVGGETVVLPLVARNRVIGMLTLGKPSDEHFRQEILELAEDLSRRAALALDNARLYSERTAISQSLQRSLLPPGLPQVPGVEVEVIYRAAGEGNEVGGDFYDLFPIRDGKYGFAIGDVCGTGPEAAAVTGLARHALRLLAREGFGGPAVLERLNAAILDEGARSRFLTLLYGELWPQEDGSAVLKVVCAGHPLPLRLRQDGTVEPYAEPQPLLGVMEDLELYEQTMTLDPGDVLLCVTDGVTERREGTRMLGDDGLADVLTTCTGLTAGAVAARIMRAVERFATDAPSDDMAILAMRVPELHS
>NZ_CP040916.1|WP_144321268.1|6534171_6534354_+|hypothetical-protein
MPAEYVCHRPGRAGPGWLDSRVPGYLPSPSMLMPVASVSARRVCGRCAKLPNCYGLLRPW
>NZ_CP040916.1|WP_144321269.1|6534409_6539923_+|HAMP-domain-containing-protein
MESGAATRGSKTRAKDGRSLNGQRKPRNGTTVTVEAAALNRLLTALVSMRDGNFRKRLTVTGDDVMSEIAAVFNEVADRNLHLTGELSRVRRTVGREGKLTERLQAGAMEGSWAAAIDASNDLVDDLVRPVSEVGRVLSAVADGDLEQRMELRAHVADGNGHPLRGEFLKVGRTVNNLVDQLSTFTDEVTRVASEVGTEGKLGGQARVRGMSGSWKDLTDSVNTMAYRLTAQVRDIALVTTAVAKGDLSRKVTVHVAGEMLELKNTVNTMVDQLSSFSSEVTRVAREVGTEGELGGQAQVPGVAGVWKDLTDSVNLMAGNLTAQVRGIAQVTTAVANGDLSQKVRVSARGEVAQLAGTINQMTETLRTFADEVTRVANEVGAEGQLGGQANVPGAAGTWKDLTDSVNTVFRNLTTQVRDIATVTTAVANGDLSQKVTVDVAGEMLELKNTVNTMVDQLSSFGDEVTRVAREVGAEGQLGGQAQVPGAAGTWKDLTDSVNTAFRNLTGQVRNIAQVTTAVANGDLSQKVTVDVSGEMLQLKNTVNTMVDQLSSMADQVTRMARDVGTEGRLGGQARVDGVSGTWKELTDSVNFMAGNLTSQVRQIAQVTTAVARGDLSQKIDVDARGEILELKNTINTMVDQLSAFADQVTRVAREVGTEGRLGGQAQVPGVAGVWRDLTDSVNGMAGNLTAQVRNIAQVATAVARGDLSQKIDVDARGEILELKNTLNTMVDQLSAFAEQVTRVAREVGTDGILGGQAEVQGVSGTWKDLTQSVNGMANNLTLQVRNIAEVTTAVARGDLSKKITVDAKGEILELVTTVNTMVDQLSSFAEQVTRVAREVGTEGKLGGQSRVPGVTGIWKDLSDNVNLMANNLTMQVRNISQVAAAVANGDLTKTVTIEARGEVAQLADTFNTMVKTLSSFADQVTKVAREVGTDGILGGQARVPGVSGTWKDLTESVNGMASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARGEILELKTTINTMVDQLSSFAEEVTRVAREVGTEGQLGGQARVRDIDGTWRDLTESVNEMAGNLTRQVRAIAAVATAVTRGDLNLKIDVDAAGEIQVLQDNINTMIANLRDTTLANKEQDWLKGNLARISGLMQGRRDLEDVASLIMSELTPVVSAQHGAFFLAMSLDDTNAPGHDEDAYELRMLGSYGYSMGSMPTSFRPGETLIGTAAKERRTILVENTPSGYLRIASGLGEAPPAQVIVLPVLFEGKVLGVIELASFQPFTQIQKDFLSQIAEMIATSVNTISVNTKTEMLLKQSQELTEQLRDRSEELENRQKALQDSNAELEEKAALLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLANAVKFTDTGAVELVIRLASNDVPNAIREQLLEAGSLRDPDADLIAFSVADTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELPPQGYAQLASPVIPALPPLESLSEVGGNAAADGAAPGTAHTEAPERHAGPAALFRRRRRAAAAAEPASEVPQPDHGPGAGAQEQWQEGVAQDATATRAGVQFDGEKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGYATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVDPDHLLSVMDQWMRGE
>NZ_CP040916.1|WP_144321270.1|6540224_6540908_+|response-regulator
MVQKAKILLVDDRPENLLALEAILSALDQTLVRASSGEEALKALLTDDFAVILLDVQMPGMDGFETAAHIKRRERTRDIPIIFLTAINHGPHHTFRGYAAGAVDYISKPFDPWVLRAKVSVFVELYMKNCQLREQAALLRLQLEGGGKAAAEDTKEPAGLLAELSARLAAVEEQAEALSKQLDDDSADAAAVATAAHLERKLTGLRRALDALEPGTGSGAPSVPSQN
>NZ_CP040916.1|WP_144321271.1|6541133_6543920_+|DNA-translocase-FtsK
MASRQPAAKKTPAKKAAAPTKAPAKKAAAKKPPAKKAPAKKAPAKKAAAPKKPAPKPAPSPTNGLYRVVRAIWLGIAHAVGAMFRGVGRGAKGLDPAHRKDGLALLLLGIALIVAAGTWSNLRGPVGDLVEILVTGAFGRLDLLAPLLVAGMAMRLIRHPEKVDANGRIVIGLSALVLGVLGQVHIACGSPARTDGMQAIRDAGGLVGWGASTPLTKAMGEVLAVPMLVLLTVFGLLVVTATPVNAIPQRLRALGVRLGVIEAPAKTAGAEEYTEYAEYTEDDERYDDQWREALPARPRSRVRRRPADGPQEPSPDRAEEEALSKRRRPRRASVQPDPDRPMDAVDVAAAAAAALDGAVLHGMPPSPLVADLTQGVSVERAPQDPSGPVPPARGADVVPGRKAAAGEPARAGVPDLTKAAPDELRDLPPRAEQLQLSGDITYSLPSLDLLERGGPGKARSAANDAVVDALSNVFTEFKVDADVTGFTRGPTVTRYEVELGPAVKVEKITALAKNIAYAVASPDVRIISPIPGKSAVGIEIPNTDREMVKVGDVLRLADAAEDAHPMLVALGKDVEGGYVMANMAKMPHILVAGATGSGKSSCINCLITSIMVRATPEDVRMVLVDPKRVELTAYEGIPHLITPIITNPKRAAEALQWVVREMDLRYDDLAAFGYRHIDDFNQAVRDGKLKTPEGSERELKPYPYLLVIVDELADLMMVAPRDVEDSIVRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPSRLAFATSSLADSRVILDQPGAEKLIGKGDGLFLPMGANKPVRMQGAFVTEDEVAAVVQHCKDQMAPVFRDDVTVGTKQKKEIDEDIGDDLDLLCQAAELVVSTQFGSTSMLQRKLRVGFAKAGRLMDLMESRNIVGPSEGSKARDVLVKPDELDGVLAIIRGEAP
>NZ_CP040916.1|WP_144321272.1|6544212_6545109_+|DUF4115-domain-containing-protein
MSIGNSPEDDRPSDDRPADERPVADGPAESPAQERPAEDRPPIGRVLRQARIAAGLTVDEISTTTRVRIPIVHAIEQDDFSRCGGDVYARGHIRTLARAVRIDPAPLLAQYDAERGGRPPAPTPAAPLFEAERIRSEPRRPNWTAAMVAAIVAVIGFVAYTAFSGGDDEGSSQQVAEGTTPTSSKPADKPKPSKPADPKPDPSDSAIAGVPRDKVTVKVDASDGRSWISAKDHNGRLLFDGLLKQGESKTFQDKKKIDLVLGDAGAISLFVNGKQVENEFEPGQVERLTYTKGDPEVG
>NZ_CP040916.1|WP_144321273.1|6545203_6546703_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MPERRTVALVTLGCARNEVDSEELAGRLEADGWALVEDAEDADVAVVNTCGFVEAAKKDSVDALLEANDLKGHGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISNRLQVILGGGSVEAHTPRDRRKLLPISPAERQEAGTDVALPGHAPVDLPDGVAPASGPRAPLRRRLGTSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAEQGVKEIMLVSENNTSYGKDLGDIRLLETLLPELAAVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVVPYFDLSFQHSAPGVLRAMRRFGDTDRFLELLDTIRGKAPQAGVRSNFIVGFPGETEADVAELERFLTGARLDAIGVFGYSDEEGTEAATYEHKLDQDVVDERLARVSRLAEELTSQRAEERVGERIEVLIESVDDEEGAIGRAAHQAPETDGQIRFVDSTPGDGLEIGRMVVAKVVGTEGVDLLAEQCEVLEASDRPHGAGEGTGR
>NZ_CP040916.1|WP_144321274.1|6547457_6548129_+|nicotinamide-nucleotide-amidohydrolase-family-protein
MTAGSSGSTVAVEAAGTGDAATGAATGAAARVAAEVLRLLGERGETLGVAESLTGGLVAAEVTAVPGASRVFRGSVTAYATELKREVLGVDGDLLAARGAVDAEVALQMAAGVRRLLGADWGIATTGVAGPDPQDGHPVGTVHVAVSAGAGVASGSAEVVPGSADAGSPLRSEGKVATLRLNGNRTEIRMESVRSVLSLLLEQLSDERTGNARAQDTEQNGGT
>NZ_CP040916.1|WP_030688912.1|6548238_6548613_+|helix-turn-helix-transcriptional-regulator
MILLRRLLGDVLRRQRQRQGRTLREVSSSARVSLGYLSEVERGQKEASSELLSAICDALDVRMSELMREVSDELSLAELAESAAATEPVRAPVRPMLNSVSVTGVPPERVTIKAPAEAVDVVAA

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Crispr_ID: NZ_CP040916_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_10

6713081-6713841

TypeI-A

Consensus_repeat	Method
GCCGNGNTGGTGCTGCGGTTCG	CRT
TGGTGCTGCGGTGCGGAGCCGCAGAG	CRISPRCasFinder
TGGTGCTGCGGTGCGGAGCCGCAGAG	CRISPRCasFinder

10 spacers

cas8u1,cas3,csb2gr5,csb1gr7

The CRISPR arrays of NZ_CP040916_10

>merge|NZ_CP040916|10|6713081-6713841|CRT,CRISPRCasFinder,CRISPRCasFinder
TCCCTGATGGTGCTGCAGTTCCGTACTGCAGCGGTAGCAGTTCCGGCGTCACATCCATTACGTAGGCCGGGTAGCCGTGATGGTGCTGCGGTTCGAAGCCGCAGAGGTAGCGCAGCAGCTCGCGGCCGGAGCTGACCCGCTGGAAGCCGCGGTGGTGCTGCGGTTCGAGTCGCAGAGGTAACAGCATCCATCGCATAACGTTCTTGGGCAGGGGGCCGCTGCGGTGGTGCTGCGGCTCGGAGCGCAGAGGTGGCACTGGGCAGATCGACAAGCCGCTGGTGGCGGTGCCGCCGCAGTGGTGCTGCGGTGCGGAGCCGCAGAGGTAGCCGTACTGGATCGACGTCATGCACGAGTACCAGATCCCGCGATGGTGCTGCGGTTCGGAGCCGCAGAGATAAACCTGCTCGAAGGCAGCGACGCCACCAAGGGCGTGGCGCCGTGGTGGTGCTGCGGCTCGTGACCGCAGAGGCAGGATCGCCGGCCCGTTGCGGTCCAGGCGCGTGAAGTCGCTGTGATGGTGCTGCGGTTCGAAACCGCAGAGACAGCTCACCCAGTCCGGGTACCGGATCATCACGTCCTCGCCGTGGTGGTGCTGCGGTTCGTGACCGCAGAGGTAGCCGTCACCGGCAGGTGCGGCAGAGCACGTGGTACACGATGCCGCGGTGGTGCTGCGGTACGGACCGCAGAAGTAGGTCCGTGTCCGGCAAATCGAGCCGGTTGCAATGCGGGCCAGGGTGGGGCTGCGGCCCGTGACCGCAGAG

>NZ_CP040916|10|1|6713081-6713830|CRT
TCCCTGATGGTGCTGCAGTTCC	GTACTGCAGCGGTAGCAGTTCCGGCGTCACATCCATTACGTAGGCCGGGTA
GCCGTGATGGTGCTGCGGTTCG	AAGCCGCAGAGGTAGCGCAGCAGCTCGCGGCCGGAGCTGACCCGCTGGAA
GCCGCGGTGGTGCTGCGGTTCG	AGTCGCAGAGGTAACAGCATCCATCGCATAACGTTCTTGGGCAGGGGGCC
GCTGCGGTGGTGCTGCGGCTCG	GAGCGCAGAGGTGGCACTGGGCAGATCGACAAGCCGCTGGTGGCGGTGCC
GCCGCAGTGGTGCTGCGGTGCG	GAGCCGCAGAGGTAGCCGTACTGGATCGACGTCATGCACGAGTACCAGAT
CCCGCGATGGTGCTGCGGTTCG	GAGCCGCAGAGATAAACCTGCTCGAAGGCAGCGACGCCACCAAGGGCGTGGC
GCCGTGGTGGTGCTGCGGCTCG	TGACCGCAGAGGCAGGATCGCCGGCCCGTTGCGGTCCAGGCGCGTGAAGTC
GCTGTGATGGTGCTGCGGTTCG	AAACCGCAGAGACAGCTCACCCAGTCCGGGTACCGGATCATCACGTCCTC
GCCGTGGTGGTGCTGCGGTTCG	TGACCGCAGAGGTAGCCGTCACCGGCAGGTGCGGCAGAGCACGTGGTACACGAT
GCCGCGGTGGTGCTGCGGTACG	GACCGCAGAAGTAGGTCCGTGTCCGGCAAATCGAGCCGGTTGCAATGCGG
GCCAGGGTGGGGCTGCGGCCCG

>NZ_CP040916|10|10|6713088-6713187|CRISPRCasFinder
TGGTGCTGCAGTTCCGTACTGCAGCG	GTAGCAGTTCCGGCGTCACATCCATTACGTAGGCCGGGTAGCCGTGA
TGGTGCTGCGGTTCGAAGCCGCAGAGGTAGCGCAGCAGCTCGCGGCCGGAGCTGACCCGCTGGAAGCCGCGGTGGTGCTGCGGTTCGAGTCGCAGAGGTAACAGCATCCATCGCATAACGTTCTTGGGCAGGGGGCCGCTGCGGTGGTGCTGCGGCTCGGAGCGCAGAGG	TGGCACTGGGCAGATCGACAAGCCGCTGGTGGCGGTGCCGCCGCAG
TGGTGCTGCGGTGCGGAGCCGCAGAG	GTAGCCGTACTGGATCGACGTCATGCACGAGTACCAGATCCCGCGA
TGGTGCTGCGGTTCGGAGCCGCAGAG	ATAAACCTGCTCGAAGGCAGCGACGCCACCAAGGGCGTGGCGCCGTGG
TGGTGCTGCGGCTCGTGACCGCAGAG	GCAGGATCGCCGGCCCGTTGCGGTCCAGGCGCGTGAAGTCGCTGTGA
TGGTGCTGCGGTTCGAAACCGCAGAG	ACAGCTCACCCAGTCCGGGTACCGGATCATCACGTCCTCGCCGTGG
TGGTGCTGCGGTTCGTGACCGCAGAG	GTAGCCGTCACCGGCAGGTGCGGCAGAGCACGTGGTACACGATGCCGCGG
TGGTGCTGCGGTACGGACCGCAGAAG	TAGGTCCGTGTCCGGCAAATCGAGCCGGTTGCAATGCGGGCCAGGG


>NZ_CP040916|10|11|6713305-6713841|CRISPRCasFinder
	GTAGCAGTTCCGGCGTCACATCCATTACGTAGGCCGGGTAGCCGTGA
TGGTGCTGCGGTTCGAAGCCGCAGAGGTAGCGCAGCAGCTCGCGGCCGGAGCTGACCCGCTGGAAGCCGCGGTGGTGCTGCGGTTCGAGTCGCAGAGGTAACAGCATCCATCGCATAACGTTCTTGGGCAGGGGGCCGCTGCGGTGGTGCTGCGGCTCGGAGCGCAGAGG	TGGCACTGGGCAGATCGACAAGCCGCTGGTGGCGGTGCCGCCGCAG
TGGTGCTGCGGTGCGGAGCCGCAGAG	GTAGCCGTACTGGATCGACGTCATGCACGAGTACCAGATCCCGCGA
TGGTGCTGCGGTTCGGAGCCGCAGAG	ATAAACCTGCTCGAAGGCAGCGACGCCACCAAGGGCGTGGCGCCGTGG
TGGTGCTGCGGCTCGTGACCGCAGAG	GCAGGATCGCCGGCCCGTTGCGGTCCAGGCGCGTGAAGTCGCTGTGA
TGGTGCTGCGGTTCGAAACCGCAGAG	ACAGCTCACCCAGTCCGGGTACCGGATCATCACGTCCTCGCCGTGG
TGGTGCTGCGGTTCGTGACCGCAGAG	GTAGCCGTCACCGGCAGGTGCGGCAGAGCACGTGGTACACGATGCCGCGG
TGGTGCTGCGGTACGGACCGCAGAAG	TAGGTCCGTGTCCGGCAAATCGAGCCGGTTGCAATGCGGGCCAGGG
TGGGGCTGCGGCCCGTGACCGCAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144321383.1\|6705562_6705853_+\|lactococcin-972-family-bacteriocin	unknown	unknown	gnl\|CDD\|370615
NZ_CP040916.1\|WP_144321396.1\|6725581_6726247_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP040916.1\|WP_144321380.1\|6700585_6701917_+\|TRAM-domain-containing-protein	unknown	unknown	gnl\|CDD\|225174
NZ_CP040916.1\|WP_144321390.1\|6717864_6719334_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_CP040916.1\|WP_144321386.1\|6710763_6711714_+\|DUF91-domain-containing-protein	unknown	unknown	gnl\|CDD\|226114
NZ_CP040916.1\|WP_144321392.1\|6721578_6721827_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144321384.1\|6706028_6708107_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226999
NZ_CP040916.1\|WP_144321394.1\|6723463_6723676_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP040916.1\|WP_144321391.1\|6719338_6720529_-\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NZ_CP040916.1\|WP_144321388.1\|6713861_6714848_-\|hypothetical-protein	cas8u1	mkCas0114_cas8u1_CAS-I-U	unknown
NZ_CP040916.1\|WP_144323796.1\|6709003_6710473_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227621
NZ_CP040916.1\|WP_144321389.1\|6714853_6717868_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NZ_CP040916.1\|WP_144321379.1\|6698367_6700416_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP040916.1\|WP_161624902.1\|6722026_6722578_-\|DUF317-domain-containing-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144321395.1\|6723723_6724878_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP040916.1\|WP_144323797.1\|6722934_6723255_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379172
NZ_CP040916.1\|WP_144321382.1\|6705092_6705386_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144321381.1\|6704063_6704522_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP040916.1\|WP_144321385.1\|6708150_6708801_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|188353
NZ_CP040916.1\|WP_144000983.1\|6702258_6703076_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144321383.1\|6705562_6705853_+\|lactococcin-972-family-bacteriocin	gnl\|CDD\|370615	pfam09683, Lactococcin_972, Bacteriocin (Lactococcin_972). These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.	6.85465e-07
NZ_CP040916.1\|WP_144321380.1\|6700585_6701917_+\|TRAM-domain-containing-protein	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.08359e-92
NZ_CP040916.1\|WP_144321390.1\|6717864_6719334_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	2.08637e-50
NZ_CP040916.1\|WP_144321386.1\|6710763_6711714_+\|DUF91-domain-containing-protein	gnl\|CDD\|226114	COG3586, COG3586, Uncharacterized conserved protein [Function unknown].	1.84546e-14
NZ_CP040916.1\|WP_144321396.1\|6725581_6726247_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.54787e-36
NZ_CP040916.1\|WP_144321384.1\|6706028_6708107_+\|hypothetical-protein	gnl\|CDD\|226999	COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown].	2.72113e-16
NZ_CP040916.1\|WP_144321394.1\|6723463_6723676_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.66399e-05
NZ_CP040916.1\|WP_144321391.1\|6719338_6720529_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.87576e-38
NZ_CP040916.1\|WP_144323796.1\|6709003_6710473_+\|hypothetical-protein	gnl\|CDD\|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	1.71649e-20
NZ_CP040916.1\|WP_144321379.1\|6698367_6700416_+\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.34778e-35
NZ_CP040916.1\|WP_144321395.1\|6723723_6724878_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.60429e-24
NZ_CP040916.1\|WP_144323797.1\|6722934_6723255_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379172	pfam13412, HTH_24, Winged helix-turn-helix DNA-binding.	9.11774e-05
NZ_CP040916.1\|WP_144321389.1\|6714853_6717868_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	4.48059e-78
NZ_CP040916.1\|WP_144321381.1\|6704063_6704522_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.82097e-20
NZ_CP040916.1\|WP_144321385.1\|6708150_6708801_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|188353	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	8.77373e-82
NZ_CP040916.1\|WP_144000983.1\|6702258_6703076_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.59737e-22

>NZ_CP040916.1|WP_144321386.1|6710763_6711714_+|DUF91-domain-containing-protein
MSGNIPALSAVLVWHRDHEGGVAVLKLFKTAGGVKEVSAHLAAVEADVQDLVEAHMEAMLGVTFLASEYVIDCVDGGRIDSLGLDENGAPVIVEYKRGTDAGVINQGLYYMAWLTNHKDAFRNLVRDRLGVTAASQILWSAPRLICVAGDFTRYDAHAVREHRRSIDLVRYRYFGSDHFGLETVASVTGHSAEAKRVRRRAAGLTPDRKQGGAMAELAQAIDEVLVGLGDGVTRVQRKQYRAYRRLRNFASVCVPQQTKILVYLKADPNEVEVIPGFTRDVTGLGHHGTGDLELQLRTERDLERAGDLLHLSYAAA
>NZ_CP040916.1|WP_144323796.1|6709003_6710473_+|hypothetical-protein
MPRPVFILRRQLPVWFIPSLWTLALGLWGLSRQHSVWRDEAATWQVAQRPVTDILHMLGNIDVVHGLYYLLMHGLFACFGPGTTTLRLPSVLATAVAAACVTVIGHRLAGAWAGLAGGLAFGLLPAVQFYLQDGRSYALVMAGAGIATLLLVTLLQGRGRTVCWAVYGSTILTCALLNWLALLILPAHLATLVWTKAGRVTFTRWAAAATAAVAATLPLILFSRSQSSQVAWIAPLTWHMLIGPAVLLAIGSLGAWWDRPRAARLSVAAVGLPLLAVPQIGLVGLSLIQPLFLDRYVLFSMLGLALLIGAASGAAVRSIRPRFPRGASGLVPVMVVVAVAALLPKSLATRSPASRVDDVLSAAEEVRQLRRDGDAVLFVPAARRDTALVSPEDFAGLQDIALVDSPVASGTLEGKEAGPDRIRAAMLAQRRILLVTDAHKVVRSMLAERDKVKTAVLNEHFTVVADERVRGRRVTVYERREDPRTLSRT
>NZ_CP040916.1|WP_144321385.1|6708150_6708801_+|ATP-binding-cassette-domain-containing-protein
MIDIVKLSKAFGARTLWSDVSTTINHGEMLALVGPSGSGKSTLLNCIGLLEKPDAGEIRYDGKDITRFGRREVRNFRRGVLGYLFQSYALIENATVAANLDVAVKPQRAIRRETGVTIADALDRVGLAGREKEKIHHLSGGEQQRVALARLMVKQPALVLADEPTGALDHANATTVIDILRELSDAGCAVVIATHDDRVRDRCDAAFAVNENSLLG
>NZ_CP040916.1|WP_144321384.1|6706028_6708107_+|hypothetical-protein
MIFSAMMAFLFVRGLDEQLILGSSAQVWVTKTDDSVSGAQVARAIAAFSDDHKVAVARELPDVKHPDSRRHLYLAAGDPNSDAASWLNDGYPAFSSHITTDVHPIEEIGQRDPRGFYYVFGAPEAADALVTELADLGLGASVQYPLAYSELAQYFAGDELLWSFWVIALAAVTMTGASVLLNAKAYGVLRLQGKSLIGLLARDLKQLAAFWSLAAGTVAAAVLVLLGLYNGLAWLGLFALVTVCLAGVLILLVLAAHAAAVALTFKVGVLRALKGELPARAAFVSTYLVRVPAVLLALGFAMDVTLASQHLTAREDNQENYAQAGDAVTIRLNGSWGGDSRPVVKQVGSWLRRADAAGEIIVAGRHDLQNLSSNARLPQGEILIVNETFLANQPVSDPKGHRYSPAPDNARVTDSATVRLIIPESLASHASNIRKTIPDVFGRMDPEVRRHLKIETSQAKSGQQVFGYNSGDRSPNVAYSPDDDRSLVRDPVLVVVPNGSHILTNDAYTTIATQDGIVFPDPDDVLAPLADNTYGLQAYVAAVNPVGQNAALLLSEAVSSFRLLLFNLIASVAVLLITGVGVCIIHSRKHAQAVFAQHINGWKFTATHRFILVVEGLLAAFLAWWVPVQVWRQNQDLAELSSQGIPAPSPPAQITTLDISAIAVLVVVEFGTVLLALRVFHRRIVKEGAAEA
>NZ_CP040916.1|WP_144321383.1|6705562_6705853_+|lactococcin-972-family-bacteriocin
MMIKNSLKAAAAAGAIIAAVAAPAMAVSEDAEGGRWSHDVGANYVYSNYFHKKVFHSSSVEGAYWAKSGCQKDGVWAKASAKKAKTISKAYYSASC
>NZ_CP040916.1|WP_144321382.1|6705092_6705386_+|hypothetical-protein
MRRSRTAGSLITGAVAVVFSLGLTAPAEAASGWTAHVQCPKEKIGSGGDIHGYVQGHGWALTVDGAYKAALKNANDQMPPGYRAHHCDKKGVRKGKP
>NZ_CP040916.1|WP_144321381.1|6704063_6704522_-|ankyrin-repeat-domain-containing-protein
MNQRKRKKLSRRLFSSILLSDAAAVKEVLRAGVAPDNPFSDGTTPLYLASVTGEAAIARLLLKAGASPDRESSGGMGSEGTPLCAAACWGHAETVRVLLAHGADPNVREDHGTGRSPLDWANVGPHPETVELLTAAGAAPQENGQAPQERHL
>NZ_CP040916.1|WP_144000983.1|6702258_6703076_-|IS5-family-transposase
MGQGTWSWIVPDGLWEIAKPLLPPSRVRPQGGGTPDTPDETLFAAIIYVLVSGCAWRHLPPCFGISKSTAHRRFLIWSRAGVWGRLHEAVLHQLGDAGLIDVTRVVLDTAHVRAKKGGEHTGPSPVDRRKPGTKMHVLSDANGLPLVVGISAANVHDSEGLKPMVAGLQTQHDPQRGRYFKPQRLHADKAYDAPTLRRWLWGKHIGVRIARKGIESSKRLGRRRWVIERTLSWLSGYHRLSPRYERHPSNYLAFLGLAAALCCYKRLLRLTT
>NZ_CP040916.1|WP_144321380.1|6700585_6701917_+|TRAM-domain-containing-protein
MQAEPKNSLVGEEYEVEVGPVAHGGHCIARTAEGRVLFVRHTLPGEKIVARVTEGDESSRFLRADAVTVLEPAKDRVTAPCPYAGPGRCGGCDWQHAKPGAQRRLKGEVIAEQLQRLAGLTPEEAGWDGTVMPAEGDKLPAGEVPQWRTRVQYAVDAESGRAGLRRHRSHEIEPVDHCMIAAQGVSELGIEQRGWSGMESIEAIAATGSQDRQVILAPRPGARLPIVELDKPVSVMRVGEKDGGVHRVHGRPFVRERADGRTYRVGSGGFWQVHPKAADTLVTAVMQGLLPRKGETALDLYCGVGLFAGAIADRVGDEGAVLGIESSKRAVEDARHNLTAFDRVRIEQGKVESVLPRTGITEVDLIVLDPPRAGAGKSTVQHLAGLGARRIAYVACDPAALARDLGYFREGGYRVRMLRAFDLFPMTHHVECVAILEPAGKGR
>NZ_CP040916.1|WP_144321379.1|6698367_6700416_+|amino-acid-permease
MSKLTDVPKRILIGRALRSDRLGETLLPKRIALPVFASDPLSSVAYAPGEVLLVLSIAGASAYHYSPWIAVAVVVLMFTVVASYRQNVHAYPSGGGDYEVANTNLGPKAGLTVASALLVDYVLTVAVSISSGIENLGSAVPFVVEHKVLCAVAVIVLLTLMNLRGVKESGKLFAIPTYVFVVGVFLMIAWGAFRGFVLDDTMKAPTADFEIKAEHQGIAGFALVFLLLRAFSSGCAALTGVEAISNGVPAFRKPKSKNAATTLALMGGLAVTMFCGIIGLAMATNVHMAEKPAKDLLENGVPVGGDYVQNPVISQVAEAVFGNGSFLFIVLAAATALVLFLAANTAYNGFPLLGSILAQDRYLPRQLHTRGDRLAFSNGIVLLAGAAALLVWVYGADSTRLIQLYIVGVFVSFTLSQIGMVRHWNRHLSTEQDPGKRRHMVRSRAINTFGAFFTGLVLIVVLVTKFTHGAWVALLGMVIFYATMTAIRRHYDRVSEEIAAPEGPTDDSVRPSRVHSIVLVSKIHKPTLRALAYAKLMRTDTLEALSVNVDPAEIKALRAEWERRGISVPLKVLDSPYREITRPIIEYVKSLRRESPRDAVSVIIPEYVVGHWYEHLLHNQSALRLKGRLLFTPGVMVTSVPYQLESSEAAKKRARRRQEWNAPGSVRRGPVEKRAKEKSGKG
>NZ_CP040916.1|WP_144321388.1|6713861_6714848_-|hypothetical-protein
MPCHELELPALVSNSPLGFLAALGILQLTTHDLDQPARLSWRGPDAPAILHTHQPLTHQTLAELLGSHLPDAPATEPLPLVPGILSLPRTGPSDALRMPIDTALHHLRTHTRAEREHNTPTAHWFTALVNQLSIAPTEKTPGKALPARGKQPDLYTSSTPLFGRGGQMTLANNWTKAAQECSEDPTHLLAALTAWRRVDGYAGANLDHHSTGDAHMVSHGKPTQQGVPGATWLALHGFATFRLTGDGTYAQTTSWDRTTPNGALTWPIWQPPLTTTSITALLEHPLVRTPNSDPAKLHNLGVTAIYAAPRTRLPQADGPLQLSLRIHP
>NZ_CP040916.1|WP_144321389.1|6714853_6717868_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MSLTPEDFPDFVEAVHGHRPFPWQTDYLNQVAETGNWLDLDVPTGLGKTSLIDIWLFLLAWQCATGQERSVPLRLFFVVDRRLVVDQAHEHARTIQDALANASHESLTGRVAQALRTLSGESTALEAVRMRGGVDWASRWLRSPVQPAVITATVDQYGSRLLFRGYHTSPRMRPIDAALCGTDALLAVDEAHIAWPLLTTATDCTAYQHTATHPHLAHRGVQVVSLSATASADPARPRHRITERDREHPVAGSRLNAQRRLALRDASTLDKNPSLAFAHAVEQAMDAMLPLVARPVIGVVANTIRTARATFQRLSARDEIDVVLLTGRCRGQDRERLLDSRQMRELFKGIRADRDRPLVVVATQTIEVGVDVSFAGLISENAAAAPLIQRLGRLDRTGVLPWAPALVIRAAAPDPQDIPVYGPAAHATWEWLTTHAPLATGAEDLRHSLRHGLVINPATLPALLDGTETASLNVPAPRIPVLHRTLLGSWTRTSPTPVPDQPTAPFLHGLSTTPEDVQVLWRSDLPTMDGQPDWDRWAARMAQVPPHPAETVAIPARKLRRFLTQATADDTTSDLEGMPDHAMPAADRQQRSMAPVLRYDDRDNQWVPATGPRDIHPGSTIVLPSHYSGHDTYGWTGTPGAAVIDLADFPPRTDSAPTRLDAQPLALLGGFDEAAAHAATTAITQASKKLLTGEGDECATDIVHQLLDRLLGLLPTADSAQPTLGSYAYDLHQRLSQLRTITTWDIAADGRSVRTGHAILDAADPARLLLVPARPQADRIERTAGVNDDDADGSSLTRPVSLPQHSKAVAARAANFAVRLELPAALVAAVETAAHAHDCGKHHPRFQCMLCAGDRLLAESLGEPLAKSGMDPADRTGRRRAARLANWDPELRHEALSALAVQEWLATGPASTQGLDADLIVHLVASHHGHARPLLPPATDPNPVDVTCLMSDQQHITVNSAAMGTDWSGPDRFHALNRRYGPWGLVLLEAVVRLADMACSEEGS
>NZ_CP040916.1|WP_144321390.1|6717864_6719334_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MPFRITVDLLDLSYQASTLDRSRAEWPPHPSRIFCALVSVADPDDPVQDAALSWLEQQPLPSLRVPAQTTEAETPRVSWVPTNASAAKPGHAVLPGRTSGGKPKVWPQRCLARPRLEFEWPSEPPRGVFAVLAELARAVPYIGRAGGHALVTADAAEHSVAESNGDEWEIWQPSEKACATGSVQSLRAPYPGYLRRLRLAHEQGESAWQQDRTFPYARQGAAEPETDQEILAGPFEDLMTFAFPPRFSLDPALTVEATGALREKVMGLLSEAGHDVEAMVAVHGHKPKGDERRLCAYLGLPFIGHPHADGRLRGIAVALPRDLDPAHRRALLAVLLRMGGGLRKLKLPSLERPVHLSYVRASEAAVNSLKSVMPEQWTRASRQWTTALPMVLDHFPRGRDIEGSVATSCRLAGLPVPDAVEVLSTGAFVPGAPTLRSNAVRRKDGDRPLPVRHVRLNFPQPVTGPVVLGSKKNFGLGLCVPTAPRKADA
>NZ_CP040916.1|WP_144321391.1|6719338_6720529_-|type-I-U-CRISPR-associated-protein-Cas7
MKDIYERLLAAASLRSTDGAVRIVSEYEPLAGVGTPLFPPTVKAKETNSAGYLVEPRYVHGDETRVVLLDQPQSQANRCETALLDAVRRREVFIPYLEMVTESYGMPVRMTSLEAPHRSRDAYFRDSVDESGRKFDETELGAALRDASSGDLSAYLRLVPSDLAYGVWDSHRKRRIQVKIPRAYRSEMIGIKPLIGVRAAGRVDRLNLAGDTVELTDSGWSPSALEKPKKGVKTARMSELGHGMIPPSEGLGGVSVTSVQRSASLSLAQLATLRFGNASEDLTAAARALIASIALLGDRLAFSAPALHLRSGCDLLMVSERIEWVQRGRDGDPHLEPLDLATPQGALELFTIAVDRAREAGLQWASEPVVVRPNTSLQQAIDKSYLIAGVGAAESE
>NZ_CP040916.1|WP_144321392.1|6721578_6721827_-|hypothetical-protein
MQEEAGAACNDYPEQAHQAGAGAPHEGPSARDIEALPTNEAVPVQVRSLVELLWEGNVKLDDALALNVGDVIPTGREIPISE
>NZ_CP040916.1|WP_161624902.1|6722026_6722578_-|DUF317-domain-containing-protein
MVVSDSHGDICETPVSDRLWHGTATASTPTAIVSALLDAVATENVWGSSPSPTAPETTITEATSPLADADWKHTIDGRYITWEAPGPQKGGVQFDAFAAQQANSPLPTWTVWGGQAVHQPDWALQLSANAPAALVQYLTFEMAEGQGVRPVRPAPDGPALRTAQAPAPVAALPPAVQRLGRSR
>NZ_CP040916.1|WP_144323797.1|6722934_6723255_+|winged-helix-turn-helix-transcriptional-regulator
MALGAMNAWTSQRAEDYGAMSTALCLCVCAAGLYGEDLLQRGYHRDRAVLAHVAAHPGAATRHVARAVGASERVVSRNLDRLTDDGLLVLVTDGATPALRSYRLAS
>NZ_CP040916.1|WP_144321394.1|6723463_6723676_+|helix-turn-helix-domain-containing-protein
MCDKLHSVQSVAEILDVSRRSVYRYIALGELSVVDLRTGSERSRVRIPGGDVQELVKRRLAQTASGATAA
>NZ_CP040916.1|WP_144321395.1|6723723_6724878_+|tyrosine-type-recombinase/integrase
MPYLRKLPSGKWQATVRTPAGDRRTETFPLKDQARSWGNELEAQYRRGIHKDPRAGKIKFKEWHDRWWDARVVEPHTLRGDASSIRNHVMPYWADWEMRAIGRIDVQAWVRKLMQDGKGASAIRRSHNLVHSLMQAAVDEEIIAVSPCRRIDLPPEAVKPPEWFTLSQAQAILDELSQPWQALALLGFYTGLRWGELTGLHGKRIDWLRSRLFVVEVNTKSGIKEYPKTAKSRREVPLPEHVLDALARHMHGRDRDGVVFTTVTKGRSGRLLNDGNWRRQTWWPAVHAARYVEADGKPRAVPKYPPHSMRHTCASWLVQQGVSLYEVQHLLGHESYQTTQRYAHLAPDAHEAVLGAWARLDSQLIAPTGVIAGPRPALVLAGAQ
>NZ_CP040916.1|WP_144321396.1|6725581_6726247_-|response-regulator
MLRVVLAEDAVLLRAGLVELLTRGGHEVVAAVGDAPSLIRAVEAERPDAVITDVRMPPDFRDEGLKAALELRARHGRLPVLVLSQYVATAYATQLLTGDGAGLSGLGYLLKDRVGEVADFLTTLRRVAAGETVIDPEVVRVLLTRRTEPLTRLTPREREVLSLMAQGLNNQTIAHRLTVTEASVVKHASNIFTKLDLDPTEGNRRVLAVLAHLRGDAGAGA

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Crispr_ID: NZ_CP040916_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040916_11

7994704-7994783

Orphan

Consensus_repeat	Method
GTCCGCGAGCGCCTGCGGCAGCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040916_11

>merge|NZ_CP040916|11|7994704-7994783|CRISPRCasFinder
GTCCGCGAGCGCCTGCGGCAGCGGCTCCCCCCGCCCCCCCCCGGGCCCGTCCGGTCCGCGAGCGCCTGCGGCAGCGGCTC

>NZ_CP040916|11|12|7994704-7994783|CRISPRCasFinder
GTCCGCGAGCGCCTGCGGCAGCGGCTC	CCCCCGCCCCCCCCCGGGCCCGTCCG
GTCCGCGAGCGCCTGCGGCAGCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040916.1\|WP_144322182.1\|8003468_8003735_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP040916.1\|WP_144323905.1\|7990045_7991092_-\|MsnO8-family-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP040916.1\|WP_144322176.1\|7996674_7998000_-\|ergothioneine-biosynthesis-glutamate--cysteine-ligase-EgtA	unknown	unknown	gnl\|CDD\|274583
NZ_CP040916.1\|WP_144322181.1\|8001970_8003422_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_CP040916.1\|WP_144322183.1\|8004919_8005861_-\|chitinase	unknown	unknown	gnl\|CDD\|119363
NZ_CP040916.1\|WP_144322170.1\|7986546_7987509_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP040916.1\|WP_144322171.1\|7987607_7989971_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223256
NZ_CP040916.1\|WP_144322174.1\|7993495_7994458_-\|L-histidine-N(alpha)-methyltransferase	unknown	unknown	gnl\|CDD\|378355
NZ_CP040916.1\|WP_144322173.1\|7991701_7991917_-\|dodecin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377810
NZ_CP040916.1\|WP_144322175.1\|7995262_7996678_-\|ergothioneine-biosynthesis-protein-EgtB	unknown	unknown	gnl\|CDD\|274581
NZ_CP040916.1\|WP_144322168.1\|7983671_7984418_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181038
NZ_CP040916.1\|WP_144323906.1\|7992208_7993441_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270450
NZ_CP040916.1\|WP_144322172.1\|7991176_7991665_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319805
NZ_CP040916.1\|WP_144323907.1\|8003794_8004688_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270704
NZ_CP040916.1\|WP_144322180.1\|8001471_8001852_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
NZ_CP040916.1\|WP_144322179.1\|8000345_8001443_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP040916.1\|WP_144323904.1\|7985512_7986511_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP040916.1\|WP_144322177.1\|7998246_7998564_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040916.1\|WP_144322169.1\|7984439_7985429_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP040916.1\|WP_144322178.1\|7998620_8000039_-\|amidase	unknown	unknown	gnl\|CDD\|235686

Protein	Function_ID	Function_description	E-value
NZ_CP040916.1\|WP_144322182.1\|8003468_8003735_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	4.79768e-21
NZ_CP040916.1\|WP_144323905.1\|7990045_7991092_-\|MsnO8-family-LLM-class-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	6.37226e-126
NZ_CP040916.1\|WP_144322176.1\|7996674_7998000_-\|ergothioneine-biosynthesis-glutamate--cysteine-ligase-EgtA	gnl\|CDD\|274583	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA. Members of this bacterial protein family, EgtA, resemble the glutamate--cysteine ligase of the two-step pathway for glutathione (GSH) biosynthesis, but instead are involved in the biosynthesis of the histidine-derived thiol, ergothioneine (EGT). Successful in vitro reconstitution of EGT biosynthesis using EgtBCDE and gamma-L-glutamyl-L-cysteine suggests that this enzyme is a bone fide glutamate--cysteine ligase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	2.80734e-119
NZ_CP040916.1\|WP_144322181.1\|8001970_8003422_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	1.91801e-121
NZ_CP040916.1\|WP_144322183.1\|8004919_8005861_-\|chitinase	gnl\|CDD\|119363	cd06546, GH18_CTS3_chitinase, GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.	3.56595e-117
NZ_CP040916.1\|WP_144322170.1\|7986546_7987509_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.10205e-40
NZ_CP040916.1\|WP_144322171.1\|7987607_7989971_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
NZ_CP040916.1\|WP_144322174.1\|7993495_7994458_-\|L-histidine-N(alpha)-methyltransferase	gnl\|CDD\|378355	pfam10017, Methyltransf_33, Histidine-specific methyltransferase, SAM-dependent. The mycobacterial members of this family are expressed from part of the ergothioneine biosynthetic gene cluster. EGTD is the histidine methyltransferase that transfers three methyl groups to the alpha-amino moiety of histidine, in the first stage of the production of this histidine betaine derivative that carries a thiol group attached to the C2 atom of an imidazole ring.	4.91403e-156
NZ_CP040916.1\|WP_144322173.1\|7991701_7991917_-\|dodecin-domain-containing-protein	gnl\|CDD\|377810	pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.	1.1394e-31
NZ_CP040916.1\|WP_144322175.1\|7995262_7996678_-\|ergothioneine-biosynthesis-protein-EgtB	gnl\|CDD\|274581	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB. Members of this family include EgtB, and enzyme of the ergothioneine biosynthesis, as found in numerous Actinobacteria. Characterized homologs to this family include a formylglycine-generating enzyme that serves as a maturase for an aerobic sulfatase (cf. the radical SAM enzymes that serve as anaerobic sulfatase maturases). [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	3.74047e-159
NZ_CP040916.1\|WP_144322168.1\|7983671_7984418_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	0
NZ_CP040916.1\|WP_144323906.1\|7992208_7993441_+\|extracellular-solute-binding-protein	gnl\|CDD\|270450	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold. This group includes the periplasmic maltose-binding component of an ABC transport system from the phytopathogen Xanthomonas citri and its related bacterial proteins. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.52109e-89
NZ_CP040916.1\|WP_144322172.1\|7991176_7991665_+\|hypothetical-protein	gnl\|CDD\|319805	cd07502, HAD_PNKP-C, C-terminal phosphatase domain of T4 polynucleotide kinase/phosphatase (PNKP) and related phosphatases. This family includes the C-terminal domain of the bifunctional enzyme T4 polynucleotide kinase/phosphatase, PNKP. The PNKP phosphatase domain can catalyze the hydrolytic removal of the 3'-phosphoryl of DNA, RNA and deoxynucleoside 3'-monophosphates. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.15239e-51
NZ_CP040916.1\|WP_144323907.1\|8003794_8004688_-\|phosphotransferase	gnl\|CDD\|270704	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase. This subfamily is composed of uncharacterized bacterial proteins with similarity to APH and ChoK. Other APH/ChoK-like proteins include ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). These proteins catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	5.08518e-106
NZ_CP040916.1\|WP_144322180.1\|8001471_8001852_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	4.95127e-35
NZ_CP040916.1\|WP_144322179.1\|8000345_8001443_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.71821e-57
NZ_CP040916.1\|WP_144323904.1\|7985512_7986511_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.45344e-48
NZ_CP040916.1\|WP_144322169.1\|7984439_7985429_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	1.56769e-10
NZ_CP040916.1\|WP_144322178.1\|7998620_8000039_-\|amidase	gnl\|CDD\|235686	PRK06061, PRK06061, amidase; Provisional.	0

>NZ_CP040916.1|WP_144322174.1|7993495_7994458_-|L-histidine-N(alpha)-methyltransferase
MSPFLLTRTLPEDATDAALRADVLHGLTHTPKTLPPKWFYDARGSVLFDEITTLPEYYPTRAEREILVARSAWIAEVTGARTLIELGSGSSDKTRHLIDALTDLHTYVPVDVSESALTGAANTLLAERPSLSVHALVADFTQGLALPGTPGPRLVAFLGGTIGNLLPAERAAFLASVRGLLSPGDSLLLGTDLVKDASVLVSAYDDGAGVTAAFNKNVLHVVNRELGADFDPEAFAHVAVWDGDREWIEMRLRSRLAQTVKIPALDLTVDFERGEDLRTEVSAKFREDGVRSELASAGLKLTHWWTDERGRFALSLSTAS
>NZ_CP040916.1|WP_144323906.1|7992208_7993441_+|extracellular-solute-binding-protein
MTFAATALLPGCGLLPGGDDDKSTVTVWLMRGSASDAFVKRFTEGFEKQHDDIDLDIRVHEWTGIGPKVQKALKKEDGPDVIEVGNTQVAQYVDRGGLEDLTLESARDLGMEDWLPGLGEPGRYRGAQYGVPWYAANRVVLYNKDLFAQAGIKQPPKTRQQWLDATARLDNGANQGIYLAGQDWYTLSGFIWDEGGDLAKEKNGAWKGSLHSPAALRGMEFYKQLQALGDGPQNADEEHPPQAGVFAKGDVAQIIAVPGSARAIEAKNPRLKGKIGYFPIPGKTAGKPGAVFTGGSDLVVREGTKERKAAVEVVKALAGAKWQKDLARTMDYVPNKTKLAPTVSGDAGVAAMAAGAARGRATPNSPRWALVEADNPIKAYMSKVLAGGDAAAEAKAASGRITEALEDYGR
>NZ_CP040916.1|WP_144322173.1|7991701_7991917_-|dodecin-domain-containing-protein
MSEHTYRVTEIVGTSHEGVDQAIRNGITRASQTLRGLDWFEVTQVRGHIEDGQIRHFQVGLKVGFRLEDTD
>NZ_CP040916.1|WP_144322172.1|7991176_7991665_+|hypothetical-protein
MTDDSRPLAVFDLDGTLADTAHRQRFLKRKPRDWDAFFAAAPHDPPLPRGVALARESAAECEVVYLTGRPERCRADTEAWLAAQGLPAGRIWMRRDHDRRPARRTKVEVLRRLAQAREVRVLVDDDALVCDDAERAGFTVVRADWARPSAALKDAQEREGRT
>NZ_CP040916.1|WP_144323905.1|7990045_7991092_-|MsnO8-family-LLM-class-oxidoreductase
MSTVIESTRFSVLDRSRVREGHEGPEALRDTVRLAQDLEALGYHRFWVSEHHGVPGVAGSAPTVLAAAVAGATRTIRVGTGGVMLPNHQPLVVAEQFGVLEALFPGRIDMGLGRSVGFTDGVRKALGRDKHAAEDFAAQLTELLDWFRGASDTGVRAYPADGVRVPAYVLATGEGAAIAAAAGLPLVIGDLRGRDRMLRAVDGYRAAFTPSPWAREPYVIVSGSIAVAETEAAARRLLVPEAWSMAYSRTHGTFPPLPPAERVEELAATGGMTDKERELYESGLQGHIHGTEEQVADALEGLLKDSGAQEVLVTTSTHDRAGLLDSYRRLAGVAGLAGAAGATAADRR
>NZ_CP040916.1|WP_144322171.1|7987607_7989971_-|ATP-binding-cassette-domain-containing-protein
MPSPRAHDHDHDPFVRVRGAREHNLRGVDVDVPRDVIAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPRVGEITGLPPAVSLQQRRAAPTSRSSVGTVTTLSNSLRMLFSRAGAYPAGAERLDSDAFSPNTAAGACPACHGLGRVHRTTEELLVPDPSLSIRDGAIAAWPGAWQGKNLRDVLDTLGHDVDRPWRELPQGERDWILFTDEQPVVTVHPVREAGRIQRPYQGTYMSARRYVMKTFSDSKSPTLRAKAERFLTSEPCPACGGSRLRPEALAVTFAGRTIAELSALPLSDLAACLRETDGSETARVLTADLLSRIDTITELGLGYLSPDRATPTLSPGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLAVLDRLKAAGNSVFVVEHHLDVMRHADWLVDVGPRAGEHGGEILHSGPVADLADVPASATARYLFGRAPSPVREVREPRGWLKVGPVTRHNLRDVTVEFPLGAFTAVTGVSGSGKSTLLGELTEELDGVGRLVRVDQKPIGRTPRSNLATYTGLFDVVRKVFAATDEARERGYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYNPETLQVAHNGRNIAEVLDLTVEGAAAFFADTPAVQRSLSTLIDVGLGYLRLGQPATELSGGEAQRIKLAGELQRARRGHTLYLLDEPTTGLHPADVELLVGRLHELVDAGHSVVVAEHDMAVVAGADWVVDLGPGGGAEGGRVVACGPPRQVSREARSRTAPYLAAALPSPA
>NZ_CP040916.1|WP_144322170.1|7986546_7987509_+|LysR-family-transcriptional-regulator
MDLLRHLRIFVVTAEELHFSRAAELLGMAQPPLSQAVRRLEKELGAELFDRSNRQVRLTAAGSVLYDEARALLVREERLRSLVRRAVDGDVGTLRAGVPEDTAAPVLHALLAACAERTPGLRVDLQEVSTQEQLRLLASGGLDVGLLHLPVDATGLVLGPEVAVELGVVLPRTSPLARLAEVALADLSGHDLVLCPRDAAPGWYDATLDVCRGGGFVPGRVRHARNPEFLLGLVAAGQGVAFERGTAARKEPRVVWRPLAGRPLAQRVAGAWPVQGAHAGAGRFAGLAAEVLSSDGTATPGPASTPGPVPRPWTVVYDPA
>NZ_CP040916.1|WP_144323904.1|7985512_7986511_-|serine-hydrolase
MRVGERRGEERGVEERIREVFARAGAEGALHATRIGTTGGAGPATGRPGTAAAPARGARADVSVAADTPVAISSVFKVLLVLEFARQAAAGQLDPRERVLVTDAHRLGGWGTAGCVDDVEISLRDLAYFALTVSDNSAADILLSRVGLDTVGMLARELGLARTRIVGGPREALASMLDDVGARTAEEFATRYRALPDEGKRRLSALDPQRANASTPREVTRLLDLIWRDAAGPPEACAQVRELMGRQVFRHRLTSGFPDDVRIAAKTGTLPGLHIEAGVVRWPEGDTYAVAVFARSRAMVADLTRVDAAIGTAARIAVDSVRYEADRLPQRG
>NZ_CP040916.1|WP_144322169.1|7984439_7985429_-|MBL-fold-metallo-hydrolase
MTTHARHGGPGRRTLLRGAALGAAVPLIPAAASAEGRTPARRRRAAAVSYRWLGTSGWRIDLHGKPKTRTVLVDPYVTRFDTGLFTGSFDPATPLRTDEALVREHAGTPEVVCVTHTHWDHLNDVPYLARSTGARVIGTETTYHVLRSLGVEAGQISVVKGGEVLAFDGYVIEVASSRHSRNGSYSYFTPGTLHAPPAAAPRTVSDLPEGDTLAFKVTPDDAPSALFMGASDFDERSFRGLEPDIAMVAVASSASTHRYVPRLLDALGRPGVLVPVHWDDFEKPLSRPPRKDGTGLDDFLAQARGTSPRSRLVVPDYRTVYGADLRPRR
>NZ_CP040916.1|WP_144322168.1|7983671_7984418_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MKLTLRVWRQRNAGAEGAMSTYEVDGISPDMSFLEMLDTLNEELIVKGEEPVAFDHDCREGICGACSLVINGDAHGPERTTTCQLHMRSFQDGDTIDVEPWRAAAFPVIKDLVVDRSAFDRIIQAGGYISVPTGAAPEAHATPVPKPDADYAFEHAECIGCGACVAACPNGSAMLFTSAKVNHLNVLPQGAPERETRVLDMVTQMDSEGFGGCTLTGECATACPKGIPLPSIAAMNKEWLRATRKAPR
>NZ_CP040916.1|WP_144322175.1|7995262_7996678_-|ergothioneine-biosynthesis-protein-EgtB
MTGSTTGAPHEVPVGPEELRRRALTALRAARERTDLLTSCVEDGELTAQHSPLMSPLVWDLAHIGNQEEQWLLRAVGGRDALRPEIDSLYDAFEHPRAARPSLPLLAPAEARRYAADVRGRALDVLESTPFTDGTPFAGTPLAEGTAQAVRGLTDAGFAFGMIAQHEQQHDETMLITHQLRAGAPALTAPDPEPAPAFGGPDEVRVPGGTFTMGTSTEPWALDNERPAHRRLVPPFFLDTTPVTNAAYQRFIDDGGYDEPRWWHERGWEAVRGHGLTAPLFWRREGGQWLRRRFGRVEPVPADEPVVHVSWYEADAYARWAGRRLPTEAEWEKAARHKPEEDRSTRYPWGDEDPAPHHANLGQRHLRPAPAGSYPRGESPLGIRQLMGDVWEWTASDFLPYPGFVAFPYREYSAVFFGGDYKVLRGGAFSVDAVACRGTFRNWDHPVRRQIFSGFRTARDATAAELAAELG
>NZ_CP040916.1|WP_144322176.1|7996674_7998000_-|ergothioneine-biosynthesis-glutamate--cysteine-ligase-EgtA
MPEGDCTNRRVRPRDAVTEAEVEALVRGICFKNGPPAAVGVELEWLVHDRRSPRLPVTSARVETARAALRTRKVHSAVTVEPGGQLELSSLPAASLMECVSAVAADLTVVRDTLRPLDLTLTGLGADPWRAPTRLLREPRYDAMESWLDRAGEAGRRMMCSTASVQICLDAGYAEPGPLGFARRWRLAHLLGPVLVAAFANSPVQDGRATGWRSTRQAVWAGIDPGRSGAPALDEEPRAAWARHALDAPVMCVRTESSGAADGAPWLVPKGLSFRSWVRSGLPRPPTRGDLDYHLTTLFPPVRPRGHLELRMVDAQPGADGWVVPLAVTMALFDDAQAAETAYRTVKPLAERAGATPAPHSPLWLDAARHGLADPELREAATACFDAALDALPRLGAAPAVLTAVAAHADRYVARGRCPADDLLDELDAQGALAAGKDVSR
>NZ_CP040916.1|WP_144322177.1|7998246_7998564_-|hypothetical-protein
MQLYEIHIHGFADTQAALALQEPLARLLCPVEDHDGPCEVPWGFTVGDGSLVLGIYASAARAAEVTDRVRSFVGGAHPAVLGGTTSDAFDELMEQYRVEHPAVGD
>NZ_CP040916.1|WP_144322178.1|7998620_8000039_-|amidase
MSSDRSEGLAETVRALSAGEVSARELAERTLTRILATQSTLNAFRVVRAEAALAEADAADRQLAAGDRAPLLGVPIAVKDDTDVAGEPTAFGCPGDFPPKARDAEAVRRLRAAGAVIVGKTNTCELGQWPFTEGPAFGDTRNPWNTRHTPGGSSGGSAAAVAAGLVPVALGSDGAGSVRIPAAWTHLVGVKPQRGRISTWPWPEAFNGITVNGPLARTVTDAALLLDAASGNHRDDPHQPSVIRAADAATREPGRLRVALSLRTPFTATPKRLHPLVRAKVVDLADRLAALGHDVEEADPRYGQIGLAFVPRATAGVADWVREVPDPALLDPRTKEAARLGRLLGGAPLRLSRRAEATLQRRVGAVFDTYDVVLAPTTATPPPPVGALAGLSALRTDQAMIAACPYAWPWNVLGWPGVNVPAGRVAGGLPVGAQLLGPAGSEPLLISLAAQLEADRRWHESWPEPADTRAAP
>NZ_CP040916.1|WP_144322179.1|8000345_8001443_+|substrate-binding-domain-containing-protein
MVQIPKQQAAPDPAPTAPSPPPDPEPQDAAQRVPHSVPTSADVARLAGVSRATVSYVLNNTSAVRISEPTRRRVREAAKELGYVPHAAARSLRAGHTRMVLMPTPQIPVGPLFSRFFSELQWALSRFDYTVVQYGSLGLTGEDAARAWAELRPVAVLAPDATALGARGVSVLKRSGAKAVFTLGPQRAEGAHALLMDQRLVGRSAAEHLLARGRRRIGVVVPEEPGLEPFSRPRLDGVRSAVRGAGDGEVTELPLGYGEDSAARLAGRWRALGLDGVFAYNDEYAMLLMRALQDEGLRVPDDTAVVGADDLMLGRLLRPRLSSVRIELPSGRGLAELVDRVVREPGARPEVHDVLGASVVHRESS
>NZ_CP040916.1|WP_144322180.1|8001471_8001852_-|thioredoxin
MSTTVELTKENFDQTMTENDFVLIDFWASWCGPCRQFAPVYEKAAEANPDLIFGKVDTEAQPELAAAFGIQSIPTLMIVRDQVAVFAQPGALPESALEDVIGQARQLDMDEVRKSVAEQQAKEQEA
>NZ_CP040916.1|WP_144322181.1|8001970_8003422_+|FAD-dependent-oxidoreductase
MTQSTDATGETADTTYDVVVIGAGPVGENVADRARAAGLSAAIVESELVGGECSYWACMPSKALLRPVVARADARRVPGLRHLVEGALDASAVLAHRDEYASHWKDDGQVGWLDSIGVDLYRGHGRLAGTRRVTVTAADGTVTELTARHAVAVCTGSRAVVPDLPGAADAKPWTSREATSADHVPGRLVVVGGGVVGVEMATVWQALGSRVTLLVRGEGLLPKMEPFAGELVADALREAGADVRTDASVKAVRRDGATVTVELDGGDRIEADEVLFATGRAPRTDDLGLDTVGLEPGAWLSVDDSCQVAGSDWLYAVGDVNHRALLTHQGKYQARIAGAAIAARARRVPILETDRWGAHSATADHDAVPQVVFTDPEAASAGLTLAAAEEAGHRVRAVDHDLASVAGSGLYADGYRGRARMIVDLDREIVLGVTFVGPGVGELIHSATVAIAGEVPVDRLWHAVPAYPTISEVWLRLLETYRG
>NZ_CP040916.1|WP_144322182.1|8003468_8003735_-|WhiB-family-transcriptional-regulator
MELVPLRQDWIRRAACVDEDPELFFPVGTSGPAEQDQEEAKRICAHCAVARECLAYALSSGQTSGVWGGKGEDELAGLRRSRPARRRA
>NZ_CP040916.1|WP_144323907.1|8003794_8004688_-|phosphotransferase
MTIDVPLVRRLLAAQFPRWAHLPVTPVPRSGMDNATFRLGDDMALRLPRYARWRGQVEREQRWLPWLAPQLPLAVSQPLAQGEPGEGYPFPWSVCRWLEGEPATTDGLADPHEAATQLAAFIGALQRIDPTDGPPPQWSNAFRGARVGAECPQLAADSTVRAKIAKLDGTVDTDAVTAVWEQALAAPAWDGPPVWLHGDLATGNLLAVDGRLTAVIDFGTLAVGDPACDLIPAWMFLPATARATFRAAVGADDATWARGRGIALAGSLPVPDDPFFQQDPARVTTALRHLKAILADG
>NZ_CP040916.1|WP_144322183.1|8004919_8005861_-|chitinase
MKRRSVLLGALALTAGSAVTANAATPHAVPRAAASKRVVVYYQTHVTNGTYVSPLGLTAHRTGVTDVIVAAVHLNDINGPYKPVHLNDDPPNAPKFDRMWRDLKTLRSQGVHVLGMVGGAAPGSFTRLDTEFDTYYPLLRDFLREYGLDGVDLDVEERMSLAGIERVIDALRRDFGPGFLIALAPVGSALSGGGNLSGFDYERLYRDRGADIAWFNTQFYNGWGSMTSTSSYDAVMRRGIVPASKVVAGTLTDPANGGSGYVDTPRLKSTVRSLVAKYPRMGGVMGWEYFNSRPGGTAAPWRWAAEVSSALRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040916_1	1.2\|2049451\|15\|NZ_CP040916\|CRISPRCasFinder	2049451-2049465	15	NZ_CP040916.1	7525393-7525407	0	1.0

1. spacer 1.2|2049451|15|NZ_CP040916|CRISPRCasFinder matches to position: 7525393-7525407, mismatch: 0, identity: 1.0

gcagcccttcggcca	CRISPR spacer
gcagcccttcggcca	Protospacer
***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_KT307967	Yersinia pseudotuberculosis strain IP2666 plasmid pYV2666, complete sequence	62461-62484	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_010157	Yersinia pestis Angola plasmid new_pCD, complete sequence	44936-44959	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_006153	Yersinia pseudotuberculosis IP 32953 plasmid pYV, complete sequence	64541-64564	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP030981	Yersinia enterocolitica subsp. palearctica strain Y1 plasmid pYV, complete sequence	6206-6229	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	CP016946	Yersinia enterocolitica strain YE1 plasmid unnamed1, complete sequence	47272-47295	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009491	Yersinia pestis strain PBM19 plasmid pCD1, complete sequence	14973-14996	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_010635	Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01, complete sequence	10406-10429	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009366	Yersinia enterocolitica strain WA plasmid unnamed, complete sequence	60299-60322	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009783	Yersinia pestis strain El Dorado plasmid pCD, complete sequence	33652-33675	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009721	Yersinia pestis strain Shasta plasmid pCD, complete sequence	8133-8156	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_014017	Yersinia pestis Z176003 plasmid pCD1, complete sequence	45339-45362	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_017263	Yersinia pestis biovar Medievalis str. Harbin 35 plasmid pCD, complete sequence	45553-45576	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033712	Yersinia pseudotuberculosis strain FDAARGOS_581 plasmid unnamed, complete sequence	45014-45037	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP032567	Yersinia pseudotuberculosis strain IP2666pIB1 plasmid pIB1, complete sequence	62461-62484	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	231419-231442	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP006747	Yersinia pestis 8787 plasmid pCD1, complete sequence	21737-21760	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_003131	Yersinia pestis CO92 plasmid pCD1, complete sequence	47297-47320	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP006750	Yersinia pestis 3770 plasmid pCD1, complete sequence	56104-56127	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033710	Yersinia pseudotuberculosis strain FDAARGOS_582 plasmid unnamed, complete sequence	33412-33435	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_017157	Yersinia pestis D182038 plasmid pCD1, complete sequence	46662-46685	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_017153	Yersinia pestis D106004 plasmid pCD1, complete sequence	45339-45362	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP016943	Yersinia enterocolitica strain YE3 plasmid unnamed2, complete sequence	47124-47147	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP016939	Yersinia enterocolitica strain YE5 plasmid unnamed1, complete sequence	47272-47295	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP016933	Yersinia enterocolitica strain YE165 plasmid unnamed2, complete sequence	47513-47536	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP006761	Yersinia pestis 1413 plasmid pCD, complete sequence	26754-26777	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP006780	Yersinia pestis 1412 plasmid pCD, complete sequence	9804-9827	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP006753	Yersinia pestis 3067 plasmid pCD1, complete sequence	9959-9982	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP016274	Yersinia pestis strain Cadman plasmid pCD1, complete sequence	19111-19134	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP019710	Yersinia pestis strain 195/P plasmid pCD1, complete sequence	2206-2229	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009905	Yersinia pestis Antiqua plasmid pCD, complete sequence	13823-13846	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009990	Yersinia pestis strain Nicholisk 41 plasmid 2, complete sequence	43272-43295	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_017565	Yersinia enterocolitica subsp. palearctica Y11 plasmid pYV03, complete sequence	35450-35473	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009837	Yersinia enterocolitica strain 2516-87 plasmid pCD, complete sequence	31780-31803	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP010246	Yersinia pestis Pestoides G plasmid pCD, complete sequence	39520-39543	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP010022	Yersinia pestis str. Pestoides B plasmid pCD, complete sequence	20207-20230	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_015056	Yersinia pestis Java 9 plasmid pCD, complete sequence	61722-61745	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_005813	Yersinia pestis biovar Microtus str. 91001 plasmid pCD1, complete sequence	13555-13578	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009758	Yersinia pseudotuberculosis strain EP2/+ plasmid pCD, complete sequence	37059-37082	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009779	Yersinia pseudotuberculosis PB1/+ plasmid pYAB, complete sequence	38642-38665	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009711	Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_1, complete sequence	41109-41132	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009713	Yersinia pestis Pestoides F plasmid pCD, complete sequence	16238-16261	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009703	Yersinia pestis strain Harbin35 plasmid unnamed2, complete sequence	61539-61562	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP045260	Yersinia pestis strain SCPM-O-B-5942 (I-2638) plasmid pCD, complete sequence	9845-9868	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033695	Yersinia pestis strain FDAARGOS_602 plasmid unnamed2, complete sequence	39908-39931	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_009377	Yersinia pestis Pestoides F plasmid CD, complete sequence	11555-11578	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033697	Yersinia pestis strain FDAARGOS_601 plasmid unnamed1, complete sequence	4866-4889	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033714	Yersinia pseudotuberculosis strain FDAARGOS_580 plasmid unnamed, complete sequence	9645-9668	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP016936	Yersinia enterocolitica strain YE7 plasmid unnamed2, complete sequence	1253-1276	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP016936	Yersinia enterocolitica strain YE7 plasmid unnamed2, complete sequence	73366-73389	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_005017	Yersinia enterocolitica 8081 plasmid pYVe8081, complete sequence	37256-37279	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033708	Yersinia pseudotuberculosis strain FDAARGOS_583 plasmid unnamed, complete sequence	16708-16731	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP045147	Yersinia pestis strain SCPM-O-B-6899 (231) plasmid pCD, complete sequence	11805-11828	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP045156	Yersinia pestis strain SCPM-O-B-5935 (I-1996) plasmid pCD, complete sequence	9845-9868	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP045160	Yersinia pestis subsp. pestis bv. Medievalis strain SCPM-O-B-6530 plasmid pCD, complete sequence	9834-9857	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009972	Yersinia pestis CO92 plasmid unnamed, complete sequence	29524-29547	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP045151	Yersinia pestis strain SCPM-O-DNA-18 (I-3113) plasmid pCD, complete sequence	9845-9868	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP006791	Yersinia pestis 2944 plasmid pCD, complete sequence	33150-33173	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP006757	Yersinia pestis 1522 plasmid pCD, complete sequence	24664-24687	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_LT596222	Yersinia pseudotuberculosis isolate NZYP4713 plasmid 2	9651-9674	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033716	Yersinia pseudotuberculosis strain FDAARGOS_579 plasmid unnamed, complete sequence	40861-40884	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_002120	Yersinia enterocolitica W22703 plasmid pYVe227, complete sequence	42866-42889	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_004839	Yersinia pestis strain KIM5 plasmid pCD1, complete sequence	11555-11578	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP033689	Yersinia pestis strain FDAARGOS_603 plasmid unnamed1, complete sequence	43984-44007	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_004564	Yersinia enterocolitica plasmid pYVa127/90, complete sequence	39293-39316	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_019234	Yersinia enterocolitica (type O:8) plasmid pYV-WA314, complete sequence	39556-39579	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP011287	Yersinia enterocolitica strain KNG22703 plasmid, complete sequence	44388-44411	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009937	Yersinia pestis Angola plasmid pCD, complete sequence	18805-18828	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP009842	Yersinia pestis strain Dodson plasmid pCD, complete sequence	68902-68925	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NZ_CP010069	Yersinia pseudotuberculosis str. PA3606 plasmid unnamed1, complete sequence	72962-72985	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_015475	Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence	35649-35672	2	0.917
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_008791	Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081, complete sequence	37257-37280	2	0.917
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	CP036421	Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence	91012-91037	3	0.885
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	162027-162052	3	0.885
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	MN693556	Marine virus AFVG_25M429, complete genome	24883-24908	3	0.885
NZ_CP040916_1	1.3\|2049490\|24\|NZ_CP040916\|CRISPRCasFinder	2049490-2049513	24	NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	173785-173808	4	0.833
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	211558-211583	4	0.846
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	NZ_CP019460	Streptomyces autolyticus strain CGMCC0516 plasmid unnamed3, complete sequence	4218-4243	4	0.846
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	NZ_CP019460	Streptomyces autolyticus strain CGMCC0516 plasmid unnamed3, complete sequence	19690-19715	4	0.846
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	MN693824	Marine virus AFVG_250M380, complete genome	3639-3664	4	0.846
NZ_CP040916_11	11.1\|7994731\|26\|NZ_CP040916\|CRISPRCasFinder	7994731-7994756	26	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	95821-95846	5	0.808
NZ_CP040916_3	3.1\|2734314\|28\|NZ_CP040916\|CRISPRCasFinder	2734314-2734341	28	KT997869	Uncultured Mediterranean phage uvDeep-CGR2-AD3-C76, complete genome	3019-3046	7	0.75

1. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_KT307967 (Yersinia pseudotuberculosis strain IP2666 plasmid pYV2666, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

2. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_010157 (Yersinia pestis Angola plasmid new_pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

3. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_006153 (Yersinia pseudotuberculosis IP 32953 plasmid pYV, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

4. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP030981 (Yersinia enterocolitica subsp. palearctica strain Y1 plasmid pYV, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

5. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to CP016946 (Yersinia enterocolitica strain YE1 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

6. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009491 (Yersinia pestis strain PBM19 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

7. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_010635 (Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

8. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009366 (Yersinia enterocolitica strain WA plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

9. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009783 (Yersinia pestis strain El Dorado plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

10. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009721 (Yersinia pestis strain Shasta plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

11. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_014017 (Yersinia pestis Z176003 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

12. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_017263 (Yersinia pestis biovar Medievalis str. Harbin 35 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

13. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033712 (Yersinia pseudotuberculosis strain FDAARGOS_581 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

14. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP032567 (Yersinia pseudotuberculosis strain IP2666pIB1 plasmid pIB1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

15. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaaccgcagtacgg	Protospacer
************** ****.****

16. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP006747 (Yersinia pestis 8787 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

17. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_003131 (Yersinia pestis CO92 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

18. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP006750 (Yersinia pestis 3770 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

19. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033710 (Yersinia pseudotuberculosis strain FDAARGOS_582 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

20. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_017157 (Yersinia pestis D182038 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

21. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_017153 (Yersinia pestis D106004 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

22. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP016943 (Yersinia enterocolitica strain YE3 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

23. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP016939 (Yersinia enterocolitica strain YE5 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

24. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP016933 (Yersinia enterocolitica strain YE165 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

25. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP006761 (Yersinia pestis 1413 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

26. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP006780 (Yersinia pestis 1412 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

27. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP006753 (Yersinia pestis 3067 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

28. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP016274 (Yersinia pestis strain Cadman plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

29. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP019710 (Yersinia pestis strain 195/P plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

30. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009905 (Yersinia pestis Antiqua plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

31. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009990 (Yersinia pestis strain Nicholisk 41 plasmid 2, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

32. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_017565 (Yersinia enterocolitica subsp. palearctica Y11 plasmid pYV03, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

33. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009837 (Yersinia enterocolitica strain 2516-87 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

34. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP010246 (Yersinia pestis Pestoides G plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

35. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP010022 (Yersinia pestis str. Pestoides B plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

36. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_015056 (Yersinia pestis Java 9 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

37. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_005813 (Yersinia pestis biovar Microtus str. 91001 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

38. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009758 (Yersinia pseudotuberculosis strain EP2/+ plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

39. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009779 (Yersinia pseudotuberculosis PB1/+ plasmid pYAB, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

40. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009711 (Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

41. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009713 (Yersinia pestis Pestoides F plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

42. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009703 (Yersinia pestis strain Harbin35 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

43. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP045260 (Yersinia pestis strain SCPM-O-B-5942 (I-2638) plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

44. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033695 (Yersinia pestis strain FDAARGOS_602 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

45. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_009377 (Yersinia pestis Pestoides F plasmid CD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

46. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033697 (Yersinia pestis strain FDAARGOS_601 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

47. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033714 (Yersinia pseudotuberculosis strain FDAARGOS_580 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

48. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP016936 (Yersinia enterocolitica strain YE7 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

49. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP016936 (Yersinia enterocolitica strain YE7 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

50. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_005017 (Yersinia enterocolitica 8081 plasmid pYVe8081, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

51. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033708 (Yersinia pseudotuberculosis strain FDAARGOS_583 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

52. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP045147 (Yersinia pestis strain SCPM-O-B-6899 (231) plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

53. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP045156 (Yersinia pestis strain SCPM-O-B-5935 (I-1996) plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

54. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP045160 (Yersinia pestis subsp. pestis bv. Medievalis strain SCPM-O-B-6530 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

55. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009972 (Yersinia pestis CO92 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

56. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP045151 (Yersinia pestis strain SCPM-O-DNA-18 (I-3113) plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

57. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP006791 (Yersinia pestis 2944 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

58. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP006757 (Yersinia pestis 1522 plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

59. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_LT596222 (Yersinia pseudotuberculosis isolate NZYP4713 plasmid 2) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

60. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033716 (Yersinia pseudotuberculosis strain FDAARGOS_579 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

61. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_002120 (Yersinia enterocolitica W22703 plasmid pYVe227, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

62. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_004839 (Yersinia pestis strain KIM5 plasmid pCD1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

63. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP033689 (Yersinia pestis strain FDAARGOS_603 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

64. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_004564 (Yersinia enterocolitica plasmid pYVa127/90, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

65. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_019234 (Yersinia enterocolitica (type O:8) plasmid pYV-WA314, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

66. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP011287 (Yersinia enterocolitica strain KNG22703 plasmid, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

67. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009937 (Yersinia pestis Angola plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

68. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP009842 (Yersinia pestis strain Dodson plasmid pCD, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

69. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NZ_CP010069 (Yersinia pseudotuberculosis str. PA3606 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

70. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_015475 (Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

71. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_008791 (Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081, complete sequence) position: , mismatch: 2, identity: 0.917

gcagtacggccaacagcagcacgg	CRISPR spacer
gcagtacggccaacacccgcacgg	Protospacer
*************** * ******

72. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.885

cccccgcccccccccgggcccgtccg	CRISPR spacer
cctccgccccccgccgggcccgtctg	Protospacer
**.********* ***********.*

73. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 3, identity: 0.885

cccccgcccccccccgggcccgtccg	CRISPR spacer
cccccgccccgccccgggcccggtcg	Protospacer
********** *********** .**

74. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to MN693556 (Marine virus AFVG_25M429, complete genome) position: , mismatch: 3, identity: 0.885

cccccgcccccccccgggcccgtccg--	CRISPR spacer
cccccccccccccccgggccc--ccggc	Protospacer
***** ***************  ***

75. spacer 1.3|2049490|24|NZ_CP040916|CRISPRCasFinder matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 4, identity: 0.833

gcagtacggccaacagcagcacgg	CRISPR spacer
tgggtacggccgacagcagcacgg	Protospacer
  .********.************

76. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 4, identity: 0.846

cccccgcccccccccgggcccgtccg	CRISPR spacer
cgcccgcccccccccgggcccgctca	Protospacer
* ********************..*.

77. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to NZ_CP019460 (Streptomyces autolyticus strain CGMCC0516 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.846

cccccgcccccccccgggcccgtccg	CRISPR spacer
cccccgcccccccccggcccccgcct	Protospacer
***************** ***  **

78. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to NZ_CP019460 (Streptomyces autolyticus strain CGMCC0516 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.846

cccccgcccccccccgggcccgtccg	CRISPR spacer
cccccgcccccccccggcccccgcct	Protospacer
***************** ***  **

79. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to MN693824 (Marine virus AFVG_250M380, complete genome) position: , mismatch: 4, identity: 0.846

cccccgcccccccccgggcccgtccg	CRISPR spacer
cccccccccccccccgggcccccccc	Protospacer
***** *************** .**

80. spacer 11.1|7994731|26|NZ_CP040916|CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cccccgcccccccccgggcccgtccg	CRISPR spacer
gcgccgcccccccccgggcccgcgca	Protospacer
 * *******************. *.

81. spacer 3.1|2734314|28|NZ_CP040916|CRISPRCasFinder matches to KT997869 (Uncultured Mediterranean phage uvDeep-CGR2-AD3-C76, complete genome) position: , mismatch: 7, identity: 0.75

gccggactgcgtggaagtggcctggaag	CRISPR spacer
cccggaccgcgtggaagtggccgcgtct	Protospacer
 ******.**************  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

553174 : 639106

Mycobacterium_phage(42.86%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144001159.1\|553174_554296_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_144001160.1\|554317_555082_-	alpha/beta fold hydrolase	R4JP33	Mycobacterium_phage	1.7e-05	33.7
WP_161624817.1\|555411_555582_-	hypothetical protein	NA	NA	NA	NA
WP_144001161.1\|555647_556604_-	DUF4331 family protein	NA	NA	NA	NA
WP_144001162.1\|557341_557824_-	hypothetical protein	NA	NA	NA	NA
WP_144001163.1\|558153_558945_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_144001164.1\|559353_559569_+	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_144001165.1\|559565_559982_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_144001166.1\|560192_560987_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_144323291.1\|560916_561480_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_144001167.1\|562280_564920_+	hypothetical protein	NA	NA	NA	NA
WP_144001168.1\|564923_569702_+	hypothetical protein	NA	NA	NA	NA
WP_144001169.1\|569793_571035_+	Kelch-like protein 17	NA	NA	NA	NA
WP_144001170.1\|571031_574301_+	hypothetical protein	NA	NA	NA	NA
WP_144001171.1\|574297_579595_+	hypothetical protein	NA	NA	NA	NA
WP_144001172.1\|579587_581447_+	hypothetical protein	NA	NA	NA	NA
WP_161624818.1\|582386_584495_+	YcaO-like family protein	NA	NA	NA	NA
WP_144001174.1\|584494_586261_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	2.6e-33	28.7
WP_144001175.1\|586257_588075_+	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	1.7e-27	25.9
WP_144001176.1\|588221_589640_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_144001177.1\|589633_589861_+	hypothetical protein	NA	NA	NA	NA
WP_161624819.1\|590040_590193_+	hypothetical protein	NA	NA	NA	NA
WP_144001178.1\|591275_591572_-	hypothetical protein	NA	NA	NA	NA
WP_144001179.1\|591646_592264_-	hypothetical protein	NA	NA	NA	NA
WP_144001180.1\|592642_593614_-	spirocyclase AveC family protein	NA	NA	NA	NA
WP_144001181.1\|593606_594935_-	hypothetical protein	NA	NA	NA	NA
WP_144001182.1\|595017_600342_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_144001183.1\|600352_600571_-	hypothetical protein	NA	NA	NA	NA
WP_144001184.1\|601013_601520_+	hypothetical protein	NA	NA	NA	NA
WP_144001185.1\|601987_602575_-	hypothetical protein	NA	NA	NA	NA
WP_161624820.1\|602611_602782_-	hypothetical protein	NA	NA	NA	NA
WP_144001186.1\|602920_603169_-	hypothetical protein	NA	NA	NA	NA
WP_144001187.1\|604927_606538_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_144001188.1\|607111_607672_+	hypothetical protein	NA	NA	NA	NA
WP_144001189.1\|608410_608932_-	hypothetical protein	NA	NA	NA	NA
WP_144001190.1\|609033_610050_-	hypothetical protein	NA	NA	NA	NA
WP_144001191.1\|611309_611615_+	hypothetical protein	NA	NA	NA	NA
WP_144001192.1\|611672_612509_-	hypothetical protein	NA	NA	NA	NA
WP_144001193.1\|612524_613559_-	hypothetical protein	NA	NA	NA	NA
WP_144323292.1\|614670_615198_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_161624821.1\|615209_616160_-	methyltransferase domain-containing protein	A0A1J0MC37	Streptomyces_phage	1.8e-41	41.4
WP_161624822.1\|616156_616303_-	hypothetical protein	NA	NA	NA	NA
WP_161624823.1\|616804_616972_-	hypothetical protein	NA	NA	NA	NA
WP_144323293.1\|617332_618244_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_144001195.1\|619570_620422_+	universal stress protein	NA	NA	NA	NA
WP_144001196.1\|620469_621351_+	universal stress protein	NA	NA	NA	NA
WP_144001197.1\|621365_622166_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_144001198.1\|622201_624586_+	phosphoketolase	NA	NA	NA	NA
WP_144001009.1\|625739_626864_-	serine hydrolase	A0A1D8EXR7	Mycobacterium_phage	1.9e-21	31.0
WP_144001199.1\|626964_628185_+	serine hydrolase	G1DB24	Mycobacterium_phage	5.9e-21	30.5
WP_144001012.1\|628282_628978_-	response regulator	NA	NA	NA	NA
WP_144001200.1\|628974_630195_-	sensor histidine kinase	NA	NA	NA	NA
WP_144001201.1\|631806_632931_+	hypothetical protein	NA	NA	NA	NA
WP_144001202.1\|633043_635227_-	glycoside hydrolase	NA	NA	NA	NA
WP_144001203.1\|635223_636537_-	cytochrome P450	S4VXU7	Pandoravirus	4.6e-19	29.7
WP_144001204.1\|636748_637156_+	DUF3224 family protein	NA	NA	NA	NA
WP_144001205.1\|637211_638045_-	DUF1206 domain-containing protein	NA	NA	NA	NA
WP_144001206.1\|638368_639106_+\|protease	trypsin-like serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

4518508 : 4530380

Streptomyces_phage(63.64%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161624876.1\|4518508_4519318_-	hypothetical protein	Q858Z0	Streptomyces_virus	6.1e-14	33.9
WP_144004305.1\|4519820_4521668_-	DNA polymerase	A0A2H5BM17	Streptomyces_phage	7.9e-235	65.4
WP_144004306.1\|4521737_4524173_-	hypothetical protein	A0A2H5BLZ0	Streptomyces_phage	0.0e+00	65.9
WP_144004307.1\|4524159_4524693_-	hypothetical protein	A0A2H5BLF2	Streptomyces_phage	7.7e-42	52.6
WP_144004309.1\|4524938_4525223_-	hypothetical protein	Q38025	Streptomyces_phage	1.6e-25	60.0
WP_144323626.1\|4525723_4526245_-	DNA cytosine methyltransferase	Q858Z2	Streptomyces_virus	1.2e-52	61.1
WP_144004310.1\|4526302_4526998_-	hypothetical protein	K4I334	Streptomyces_virus	9.7e-61	53.2
WP_144004311.1\|4527088_4527925_-	hypothetical protein	K4HZ42	Streptomyces_virus	1.8e-85	57.9
WP_144004312.1\|4528075_4528630_-	hypothetical protein	A0A2P1JT23	Streptomyces_phage	2.1e-42	50.6
WP_144004313.1\|4528650_4528893_-	hypothetical protein	NA	NA	NA	NA
WP_144004314.1\|4529050_4530031_-	CHAP domain-containing protein	Q9ZX99	Streptomyces_phage	6.3e-66	40.8
WP_144004315.1\|4530125_4530380_-	hypothetical protein	D7NW67	Streptomyces_phage	1.3e-07	45.5

DBSCAN-SWA_3

4533486 : 4546393

Streptomyces_phage(100.0%)

terminase,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144319814.1\|4533486_4535877_-	hypothetical protein	A0A2H5BLS1	Streptomyces_phage	1.5e-100	51.9
WP_144319815.1\|4536266_4536578_-	hypothetical protein	NA	NA	NA	NA
WP_144319816.1\|4536623_4537160_-\|tail	phage tail protein	Q6VY45	Streptomyces_phage	6.8e-22	37.9
WP_144323628.1\|4537218_4537602_-	hypothetical protein	Q6VY47	Streptomyces_phage	3.3e-34	59.1
WP_161624877.1\|4537622_4537850_-	hypothetical protein	NA	NA	NA	NA
WP_144319818.1\|4537864_4538209_-	hypothetical protein	A0A2H5BLV9	Streptomyces_phage	4.5e-27	56.6
WP_144319819.1\|4538205_4538760_-	hypothetical protein	A0A2H5BLU2	Streptomyces_phage	8.0e-42	56.7
WP_144319820.1\|4538947_4539910_-	hypothetical protein	A0A2H5BLW0	Streptomyces_phage	1.8e-126	72.9
WP_144319821.1\|4540013_4540583_-	hypothetical protein	A0A2H5BLQ7	Streptomyces_phage	3.5e-16	45.5
WP_144319822.1\|4540597_4541569_-	hypothetical protein	A0A2H5BLR1	Streptomyces_phage	3.0e-108	65.8
WP_144319823.1\|4541577_4542999_-\|portal	phage portal protein	A0A2H5BLQ6	Streptomyces_phage	1.1e-172	65.0
WP_144319824.1\|4543013_4544711_-\|terminase	terminase large subunit	A0A2H5BLT3	Streptomyces_phage	1.4e-275	82.5
WP_144319825.1\|4544691_4545171_-\|terminase	P27 family phage terminase small subunit	A0A0K1Y5Q1	Streptomyces_phage	1.5e-49	60.5
WP_144319827.1\|4546051_4546393_-	HNH endonuclease	Q37834	Streptomyces_phage	2.0e-19	40.4

DBSCAN-SWA_4

6904510 : 6913532

Streptomyces_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144321516.1\|6904510_6905362_-	hypothetical protein	K4I0C6	Streptomyces_virus	1.5e-31	43.9
WP_144321517.1\|6905801_6907658_-	DNA polymerase	A0A2P1JT26	Streptomyces_phage	3.8e-221	63.2
WP_144321518.1\|6907742_6910163_-	toprim domain-containing protein	K4I341	Streptomyces_virus	9.8e-310	64.6
WP_144321519.1\|6910252_6910678_-	HNH endonuclease	A0A2H5BLX4	Streptomyces_phage	1.2e-50	68.1
WP_144321521.1\|6911226_6911535_-	hypothetical protein	NA	NA	NA	NA
WP_144321522.1\|6911572_6912280_-	hypothetical protein	A0A2H5BLF0	Streptomyces_phage	1.9e-59	50.7
WP_144321523.1\|6912683_6913532_-	hypothetical protein	Q859A3	Streptomyces_virus	5.1e-88	58.6

DBSCAN-SWA_5

6916754 : 6929877

Streptomyces_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144321526.1\|6916754_6917306_-	hypothetical protein	Q9ZX97	Streptomyces_phage	2.6e-40	50.3
WP_144321527.1\|6917355_6917556_-	hypothetical protein	NA	NA	NA	NA
WP_144321528.1\|6918514_6920749_-	hypothetical protein	A0A0K1Y5U2	Streptomyces_phage	3.5e-213	68.6
WP_144321529.1\|6920787_6921024_-	hypothetical protein	NA	NA	NA	NA
WP_144321530.1\|6921032_6921665_-	hypothetical protein	Q859B1	Streptomyces_virus	8.0e-54	49.8
WP_144321531.1\|6921844_6922969_-	hypothetical protein	Q9ZXA2	Streptomyces_phage	3.0e-43	31.5
WP_144321532.1\|6922968_6923583_-	hypothetical protein	Q859B4	Streptomyces_virus	9.2e-31	34.5
WP_144321533.1\|6923711_6925937_-	hypothetical protein	A0A2H5BLG0	Streptomyces_phage	6.2e-08	65.1
WP_144321534.1\|6926376_6926709_-	hypothetical protein	NA	NA	NA	NA
WP_144321535.1\|6926818_6927391_-	hypothetical protein	A0A2H5BLI6	Streptomyces_phage	2.1e-45	50.0
WP_144321537.1\|6927800_6928103_-	DUF5403 family protein	NA	NA	NA	NA
WP_144321538.1\|6928857_6929877_-	hypothetical protein	A0A2H5BLD0	Streptomyces_phage	9.0e-47	37.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040916

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection