CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041730	Chitinimonas sp. R3-44 chromosome, complete genome	3 crisprs	csa3,WYL,DinG,DEDDh,cas3	1	1	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041730_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041730_1

243936-244021

Orphan

Consensus_repeat	Method
GTCCGCGTCCGAATCTTCCACCTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041730_1

>merge|NZ_CP041730|1|243936-244021|CRISPRCasFinder
GTCCGCGTCCGAATCTTCCACCTCCTTGAAGGAAGTTTCGCTTAATTGATTGATTTCGTTGTCCGCGTCCAAATCTTCCACCTCCT

>NZ_CP041730|1|1|243936-244021|CRISPRCasFinder
GTCCGCGTCCGAATCTTCCACCTCCT	TGAAGGAAGTTTCGCTTAATTGATTGATTTCGTT
GTCCGCGTCCAAATCTTCCACCTCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041730.1\|WP_143855994.1\|255431_256505_-\|TyeA-family-type-III-secretion-system-gatekeeper-subunit	unknown	unknown	gnl\|CDD\|237949
NZ_CP041730.1\|WP_143855992.1\|252795_254880_-\|EscV/YscV/HrcV-family-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|183699
NZ_CP041730.1\|WP_143855977.1\|233780_236756_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP041730.1\|WP_143855981.1\|239709_241197_-\|EscC/YscC/HrcC-family-type-III-secretion-system-outer-membrane-ring-protein	unknown	unknown	gnl\|CDD\|237950
NZ_CP041730.1\|WP_143855991.1\|251459_252809_-\|EscN/YscN/HrcN-family-type-III-secretion-system-ATPase	unknown	unknown	gnl\|CDD\|180712
NZ_CP041730.1\|WP_143855985.1\|244591_244921_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_143855980.1\|238459_239701_-\|EscD/YscD/HrpQ-family-type-III-secretion-system-inner-membrane-ring-protein	unknown	unknown	gnl\|CDD\|274166
NZ_CP041730.1\|WP_143855986.1\|245244_248034_-\|two-component-system-sensor-kinase	unknown	unknown	gnl\|CDD\|237951
NZ_CP041730.1\|WP_143855988.1\|249637_250618_-\|YscQ/HrcQ-family-type-III-secretion-apparatus-protein	unknown	unknown	gnl\|CDD\|274196
NZ_CP041730.1\|WP_143855979.1\|238201_238426_-\|EscE/YscE/SsaE-family-type-III-secretion-system-needle-protein-co-chaperone	unknown	unknown	gnl\|CDD\|378110
NZ_CP041730.1\|WP_143855983.1\|241941_242586_+\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|185267
NZ_CP041730.1\|WP_143855975.1\|230666_231131_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP041730.1\|WP_143855982.1\|241193_241589_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_143855987.1\|248311_249568_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349881
NZ_CP041730.1\|WP_143855978.1\|236759_238160_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270238
NZ_CP041730.1\|WP_143855993.1\|254849_255215_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185251
NZ_CP041730.1\|WP_143855990.1\|251079_251466_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_143855976.1\|231213_233775_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|235101
NZ_CP041730.1\|WP_143855989.1\|250604_251099_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_143855974.1\|229602_230418_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576

Protein	Function_ID	Function_description	E-value
NZ_CP041730.1\|WP_143855992.1\|252795_254880_-\|EscV/YscV/HrcV-family-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|183699	PRK12720, PRK12720, EscV/YscV/HrcV family type III secretion system export apparatus protein.	0
NZ_CP041730.1\|WP_143855977.1\|233780_236756_+\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.92723e-47
NZ_CP041730.1\|WP_143855981.1\|239709_241197_-\|EscC/YscC/HrcC-family-type-III-secretion-system-outer-membrane-ring-protein	gnl\|CDD\|237950	PRK15346, PRK15346, EscC/YscC/HrcC family type III secretion system outer membrane ring protein.	0
NZ_CP041730.1\|WP_143855991.1\|251459_252809_-\|EscN/YscN/HrcN-family-type-III-secretion-system-ATPase	gnl\|CDD\|180712	PRK06820, PRK06820, EscN/YscN/HrcN family type III secretion system ATPase.	0
NZ_CP041730.1\|WP_143855980.1\|238459_239701_-\|EscD/YscD/HrpQ-family-type-III-secretion-system-inner-membrane-ring-protein	gnl\|CDD\|274166	TIGR02500, Yop_proteins_translocation_protein_D, type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.0372e-67
NZ_CP041730.1\|WP_143855986.1\|245244_248034_-\|two-component-system-sensor-kinase	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	0
NZ_CP041730.1\|WP_143855994.1\|255431_256505_-\|TyeA-family-type-III-secretion-system-gatekeeper-subunit	gnl\|CDD\|237949	PRK15345, PRK15345, SepL/TyeA/HrpJ family type III secretion system protein.	6.73917e-46
NZ_CP041730.1\|WP_143855979.1\|238201_238426_-\|EscE/YscE/SsaE-family-type-III-secretion-system-needle-protein-co-chaperone	gnl\|CDD\|378110	pfam08988, T3SS_needle_E, Type III secretion system, cytoplasmic E component of needle. T3SS_needle_E is a family of proteins from the operon that builds and controls the needle of the injection system of type III secretion. The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The family is cytoplasmic and may help to stabilize and prevent early polymerization of the needle-protein F.	1.669e-07
NZ_CP041730.1\|WP_143855983.1\|241941_242586_+\|two-component-system-response-regulator	gnl\|CDD\|185267	PRK15369, PRK15369, two component system response regulator.	2.59511e-113
NZ_CP041730.1\|WP_143855975.1\|230666_231131_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.21054e-14
NZ_CP041730.1\|WP_143855988.1\|249637_250618_-\|YscQ/HrcQ-family-type-III-secretion-apparatus-protein	gnl\|CDD\|274196	TIGR02551, translocation_protein_Q, type III secretion system apparatus protein YscQ/HrcQ. Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	9.61492e-34
NZ_CP041730.1\|WP_143855987.1\|248311_249568_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349881	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme. Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells.	4.31772e-107
NZ_CP041730.1\|WP_143855978.1\|236759_238160_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.37103e-26
NZ_CP041730.1\|WP_143855993.1\|254849_255215_-\|hypothetical-protein	gnl\|CDD\|185251	PRK15353, PRK15353, type III secretion system apparatus protein.	2.57532e-11
NZ_CP041730.1\|WP_143855976.1\|231213_233775_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|235101	PRK03059, PRK03059, PII uridylyl-transferase; Provisional.	0
NZ_CP041730.1\|WP_143855974.1\|229602_230418_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.83211e-166

>NZ_CP041730.1|WP_143855983.1|241941_242586_+|two-component-system-response-regulator
MQINPQARVNILIVEDHALLIEGIKNLLGNFPQYHVVGEVEDGLDVYRACQTHHPDLVLLDLGLPGMDGIDIIRQLRKRWPDLLIVVITANAAEHKASDALQAGAQGYVLKKSSQQILLAALQTVLLGKEFIDPALNESQVRKQTDHGENTVLTSRERQVLKLIAEGCRNRDVAEHLSISLKTVETHRLNLMRKLDAHNSTELVGWAQRIGLIE
>NZ_CP041730.1|WP_143855982.1|241193_241589_-|hypothetical-protein
MDVLELLGNLTSVRVTGTSGARLLLDVAGAAGWIWIVEERAGIAVQIDVNNVSDAWLRKTSLLLGAGDDTEEFCLILDGGKVWLYRTYSLAMTPVEWEANLGLLMTVAHFLANNAARKIERAVVGGVGRLA
>NZ_CP041730.1|WP_143855981.1|239709_241197_-|EscC/YscC/HrcC-family-type-III-secretion-system-outer-membrane-ring-protein
MRWSLGVLGLLMHAWVHAAPPVLQSDNTEPYRLVTRGIKLTSLLKDLGSNYGLSVVVSSKVDNVFVGTLNEPGPDEVLDRLARLYGLAWYYDGEAVYVYQAQEVSTDLVTPVYLPASTVMAELSQNGRLDSRFCRVRALPSTNALEVFGVPICVERVNRLTKRLDEQALNQDKNKETVRVFPLKYATASDGEYTYRGQRVVVPGVVSVLRDMVQSRGLAPDGSKEALVPADRAQAYFSADTRQNAVIVRDHSANLKLYEDLIPQLDLKPKLIEISVAIIDVDAGDISALGVDWSASAKLGKGSIEFNTGMPDTGGFSTVISNTGNFMMRLSALEQHSKAKVLSRPSLVTLNNVQAILDRNITFYTKVTSEKVAKLESIATGSLLRVTPRLFEDEGQQQVMLMLNIQDGKQGQPTSHAETLPQVLNSEITTQASLKAGQSLLLGGFVQDEQIEGERKIPFLGDLPLIGKLFSSRSKTNNRVVRLFLIKAEPVSNKG
>NZ_CP041730.1|WP_143855980.1|238459_239701_-|EscD/YscD/HrpQ-family-type-III-secretion-system-inner-membrane-ring-protein
MNFQYKLRLLNGPLLGRELKLPPGTIHIGDGDSDSDIVVPLEGGGMAQLLIDEEGVVVATPAPCWVDGEVWDTAQPLPLGRAVDLDGVAMVFGRVEDELANLTVPVRMNRQGGKHGKRQVWLPLAIVCVTAAILLLSYLLLNQDGTPSAQARAADSTTTPALPPRNPELSSLRFKWDQQHVLTISGPCADSVQVELMLQALRQSGTLFRNETVCRDQLIRNALNIIQLHGYRDVEVRDGDSLDSIKIEGPIRADERWEGVLQDLRRVSGLRSWEVRNDVDGAVRQLALWLKEQGLGEGVSITLLNDTMMVTGALDTATETHLKRALRQFDGQAHLRLKTAFQNIPSAVDINQYLPAPPQSIGGNRGAPYLELANGLRLQAGSYLPNGYEVISFSNKGIGLLSNNSVVYLPLGW
>NZ_CP041730.1|WP_143855979.1|238201_238426_-|EscE/YscE/SsaE-family-type-III-secretion-system-needle-protein-co-chaperone
MARITELETNLQADQHGSYHARLIKQLAVRQAELARQLRQPVTPERYRELSALHTACLAARNIVDTLWRRYRMG
>NZ_CP041730.1|WP_143855978.1|236759_238160_-|ABC-transporter-substrate-binding-protein
MQETTPPTGRQRRREIRRKIARKVLPARFHARISAVSWRDLAVTLGPFLLFSVLLIAAVITLLDPAPPKTITISSGPEGSAFHKHAEKYRKILARNGITLVVLKSEGSLENLDRLSAGKVDLGFVIDGITPAGKADQLVSLGSISHQPMFMFYRGKETVGKLTELAGKRVSIGRVGSGARVLALALFKANGIDQGGTTQLRGLEAEDAVEALLAGEIDAAFLMGDSASLATMRKLMFAADVHLLNLSQAEAYTRRIPSLGKLTLPMGAIDLARNIPSLDIALVAPNVELLARESLHPALSDLLIDAAREVHGRRGLLQEAGEFPVAQSSDFRLSDDADRYYKFGKGFFYRHLPFWLASLLDRIVILVLPIAVLLIPAIRLLPWLYRWRIHSRIYPWYGALMALERGLLSQPIPEDRGPLLARLDEIEQGVNKLTVPLAFIDQIYVLREHIAFVRARLAADGLGARQ
>NZ_CP041730.1|WP_143855977.1|233780_236756_+|PAS-domain-S-box-protein
MPRKPTPGDHRPDGLVGYAESTPTGLGLTPLRIQHDMNAAPPSALASSAAILDMPLVLREGLPMAAYACDADGRIRWFNRRAASLWGREPLIQDGRELYCGAYQLLDLDGSSFAHDKQPMAQVLRTGTGNHEQEVIVQRQDGTRAVALLQIEPVFDEGQVLIGAICCCTETTARYQTLQALHENQRTPSELLQALPAAIYTTDAKGYITSFNAAAVALWGWEPVIGSSQWCGAWRLLWPDGTHLPHEECPMAITLKEGRPLRGIEAMAERRDGSRVPFLAYPSPIWDEHGTLIGAVNMLVDYTAQKHSERRLRDEANINETLSHISEMLVTELALPKIAQLVTDGATKLIAAQFGAFFYNAQDGQGERYMMYAISGEVHEVASPFTVAPDTDMLRRLFQGHGAVRVDDLTQVPGYKESVLGHAAQTIKSHLAVPVISNSGEFLGALLFGHSLAGVFTERHEQLIGGVANQAAIAIDNARLYTRLQEVAERLSLALSAAKLGDWSWMVESDLVTFSENAARIFGITAEPLKPWSEMVDMIHAEDREQVIQAIGQAVITRQPTSIECRIARPDGRSVWVSAWGMANSHVDGANQGLFGVIQDISERKQMEEELRKRASALADTDKRKDEFLATLAHELRNPLAPLRTSLEVLQRKDCTEAQYVAARAVMSRQVAQMAILIDELLDVSRISSGKVILRRENIGLQAIIDHALEMTLPLITEYGHRISVNIPAAPVYLHADKTRLAQTLSNLLNNAAKYTPKGGDIWLDATVDGHDIVINIRDSGIGIASEMLERVFDVFLQIDRNFEQAEGGLGIGLSLAKRLTALHGGSLTAHSEGLGKGSLFTLRLPLLANLEAPMHDTLPISAEHGASTARRILVVDDNVDCLESMAMLLELEGHEVLRAQDGLDAYRIAMQKRPDIVFMDIGLPKLNGYETAQKLREDYGSQALTLVAISGWGQDKDRTLSLQAGFDFHLVKPVDFSALTMVINEGRPGA
>NZ_CP041730.1|WP_143855976.1|231213_233775_+|[protein-PII]-uridylyltransferase
MNASLPIPDLRRQLQSARALLHHDYHDPERAAELVEADARLVDHFLVERWRELEIDPQAALIAVGGYGRGQLFPCSDIDLLILLPANAGKHTLQKVESLVGLLWDLGLEVGHSVRTLSECLAEARDITVSTTLLETRLLAGSGPAYGELVESVFGQLDQRAFFEAKLLEQQQRHERYQGSVNKLEPNVKEAPGGMRDLHLVLWLTGACGLGGDWDSLHKSGVLTGQELRKLKRAEKMLWSFRIALHLTANRREDRILFDYQNTLAKRFGYVDNGADRASEQLMAVYYRSARIVAQLQPLLIQAVRRKLYGRARLEIEAINERFVARGHLLEIAHPDVYEQTPSAILETFLVLQQHPQLSGIGADTLRALWHARPRINAAFRRDPVNKRLFLEILRQPWGTTRVMRRMNQYGVLGRYIPAFGKIVGRMQHDLFHVYTVDEHILMVLRNLRRFATPAFNHEYPACSQLIEAFERPELLYLGALFHDIGKGRGGDHSQLGKVDAREFCVSHGLDREDTEMVAWLVEHHLTMSSVAQKQDVYDPETVEAFAQIVRNERHLNALYLLTVADIRGTSPKVWNAWKAKLLEDLFRATRRYLSGETLNTIDALDERRQEAESQMRRHGLRDDAHRPLWKTLDAVYFLRHDAPEIAWHGRILWGRFDKDEVVVRARPAEADGGLQVLVYCPDRPDLFARICAFFERTGYSIFDAKIYTTLKGYALDSFYVHTADGHDTEYRDLVGYIEYELAQLIVRDDALPPPLSGRVSRVLRHFPLPPQVLIRQDDKQRLHILSLVAGDRPGLLSRIARVLSAHAIAIHSAKIMTLGERAEDTFTISGQALADPKSLVRLEADLMETLRL
>NZ_CP041730.1|WP_143855975.1|230666_231131_+|GNAT-family-N-acetyltransferase
MLVQIDLADTLLALELLQVQRVAYQQEAELIGYPALPPLRETLPELLDCGETVLGWRVDGELRGAVGYLAQAGQADICRLVVAPAWQRQGIARQLLQALIDNDEYAAITVTTAAANLPALALYREMGFLPSTPFTTPDGLALVRLQRGPAPDRC
>NZ_CP041730.1|WP_143855974.1|229602_230418_+|type-I-methionyl-aminopeptidase
MTIVIKTQEDIEKMRIAGRLASEVLDYITPFVVPGVTTAELNRLCHEYMTNVQGTIPAPLNYCPPGYTPYPAAICTSVNQVVCHGIPNDKALRSGDVVNLDITVIKDGYHGDTSRMFAVGEVASHAKRLAQVTFECMWIGIDLVRPGIRLGDIGAAIQRHAEKQGYSVVREFCGHGIGKKFHEEPQVLHYGKPGTGLELKAGMIFTIEPMINAGKKEIRPMPDGWTITTKDRSLSAQWEHTILVTENGYEVLTQSAGTPAKPALEAHMHTA
>NZ_CP041730.1|WP_143855985.1|244591_244921_-|hypothetical-protein
MSVMNILHKVASLMYMAPTCYDKKSGPYQFEKSPDKSACDISKLLSDPGCEIRLWRGKATQAKIPSSLSTCEILNPVAVGGDTESPDGSGNHSLMEKFWSWLNTFRGAL
>NZ_CP041730.1|WP_143855986.1|245244_248034_-|two-component-system-sensor-kinase
MTFPRLGSSLALKLLMKIAALAATFWFINEGLADLYIYHESRTIVTAEITRATQLRVKLENYRGLSAEQNARKLLERWEQYHNAKNLSLAVSNKPAPHFFTFHTARFLGNDDSVEAKSPEVRVTVAILQEFGISGFTDYLDSFVVLPEEGLVMFPPLESDANYLGRRKQELQQLRKAPIRDGFQWSDPYFDPAYGWRVSVAAIDPQSGAMAGFGLRIIDLPTANKFNESIGTLLVRDRHSGRLLPVPENPLPIAEVEEVFRQTPPCKELTSQTAADYLVICKPLLGAPWEALVLYPERQIRAAVFEPMLAWLPMTLCLGIFLLTAMFYIFRHDLARPLQDFTAIIDLTGPRSLQLRLPQRRRDELGRIAKAYNGLLDTISAHYETLERKVAERTRELDEAKHIAELANQRKSEHITSISHDIRTPLNGIVGALGLLQHSVWQTSQHDLIDTALKSSGYLLGIINNLLDFSRIEAGQMELSVEPTKLLPLLDEAMLTVHLRAAEKGLTLKTLVEKDVPLSVPLDALRVRQILINLLGNSVKFTERGFVQLHVSVQGDTLCIAVDDSGPGIPMEERARIFKPFEQVRPHTNGSGLGLAISTRLAGLMGGSVELETGAKGGARFVLKLQLSGSSAEPLPFSGPLAAPIGLHEQLAEWGFEPVVGNDGPLAAMELIFLPGRLWQRLQNPSGEGSDSARIQQSPWLLKVLLVDDVPTNRDIVGKMIRHLGHDVITAESGEAALAQGRKHVFDLVLMDVRMADMDGLEATRRWRDERYEVLDNLCPIIALTANALPAERERVRSAGMDEYLAKPVSINHIAWAVDFAVSAQLSRGIELTPNAHLQKSMLDSDDDSMRMRLKDELYRLLERVAGALAVLDENQLKDALHALKGSAGQGGAELVWDAVEELEARLQTGVWPAELDVRDIAILIENAF
>NZ_CP041730.1|WP_143855987.1|248311_249568_+|M20/M25/M40-family-metallo-hydrolase
MLLTQAQAALGPVETALVKTVGQNSQEQLATLEKLVNINSGSTNPAGVIAVGEVLKPEFEALGFEVKWHALPAEMRHAGSLVATRPDGSGKKILLIGHLDTVFSPASRFQRFIRSGDKASGPGVIDDKGGVVTLLHALKALHAEGLLKRSNIVVVLTGDEEQSAKPTSISRKALMDAAEGAEVALEFEFSLADDSAVVARRGIGEWLLRSSGTSAHSSTIFSPKVGVGAVFELAHMLDTMRTQLADIPGLTFNPGLIMGGSELEEDAENGRGTVTGRKTVVAQTALAHGDLRFIDGAQMASTQARMRGIVANSLAGAHSTIEFKDGIPAMADTAANRALLQQYHEVSEALGYGPVRAVPPTARGAADISFVADKIKANLAGLGPAGTGAHTESETIWLDSLPKATSRAAILIYRLLQD
>NZ_CP041730.1|WP_143855988.1|249637_250618_-|YscQ/HrcQ-family-type-III-secretion-apparatus-protein
MSLADVYDELESLLLLVSSGRTIDTASGDRITLEYKKSGGNGLVLNFRMGDRALSAWVAEHEYCRWIEPMLPVPSADRIPPELFPLLCTWSLAPLDAWLTSLGFEQILGDSIARGEGDAEEGWVLTIEGDRGQLCLSLLDWPLDWLKCIAEQQAPFEMQACEMTAPVCVAAGWTRMTLNNLRSLRIGDGLVLDTSARIDEGEWYLFERKPLARISCAEDDSLATVEELMDDFDDWLNIAEIEKTLGECEPEPFTGVNDIVMTVVAEAGRIELPLSSLASLHEGQLLDANIRHNRDIRLKINGKTIGSGSLVKVGEKLMVRIEKLGL
>NZ_CP041730.1|WP_143855989.1|250604_251099_-|hypothetical-protein
MSTFPLEGTKPLRAGRTSGRQEPDEESKRRFKKLLDLQDAVTAPPSGQASPWQAMSTPLSLETEQRLRGAPQASKQSQPAQMPLLTASSTLDGAGSVLHLRLLSGPLPGIELHVSLVAGALTLKLSTSDKRHHDKLTGKLASLEASLQDLFDYPLSLKVLHEPC
>NZ_CP041730.1|WP_143855990.1|251079_251466_-|hypothetical-protein
MLNQLLYVKRRREQGMRSALTMIARQEAALEEEEARLVQERLQLWEEWNSGSAAQGVVTQTQFQTIKGELAMCYQRDRVIGDRIEALHAEAGRLKVAKAEQLSLLRKNLLEQEKLLYLLEQSDEHISS
>NZ_CP041730.1|WP_143855991.1|251459_252809_-|EscN/YscN/HrcN-family-type-III-secretion-system-ATPase
MRLPEEGRISLPLSNKLSGQTAGRGDDESVRLLGRIIDVGPTILRASLPGVSLGELCRLEGRGIDAEVVSIEGPIALLSPFAEPVGIGRGELVRPLGYRHRIAVGDFLVGSVLDGLGNPLTELPARDDSRTEYRTLDRRAPDPLTRPIIDTPLPLGVKVIDGLLTCGRGQRIGIFAAAGGGKSTLLSMICDGSHADVIVLALVGERGREVREFLEHALTPEARARTVVVVSTSDRPALERLKAAYTATTIAEYFRDQGKSVLLMVDSLTRFARAVREIGLASGEKPAAGSFPPSLFAQLPRLLERAGPAVTGSITGIYTVLVEGDNMNEPVADEVRSILDGHIILSRKLAESNHYPAIDVGASISRIMNQIVPAKQRELAGKVRRMMARYKEIELLVRVGEYQKGQDAEADEALARRDAIGAFLRQGVDEKSSLEDTVRMLWNVAEGPC
>NZ_CP041730.1|WP_143855992.1|252795_254880_-|EscV/YscV/HrcV-family-type-III-secretion-system-export-apparatus-protein
MTSKCGVGIVKRIRDWLIIAAGRQDVVLAVMLLVAVFMMIVPLPTPLVDVLIAINLTFSIVLLMVAIYLRDPLELSVFPSLLLITTLYRLALTISTSRLILLQHDAGEIVYAFGSFAVGGNLAVGLIVFTIITIVQFIVITKGSERVAEVGARFSLDGMPGKQMSIDGDMRAGVIDAVEAKRLRALVQKESQLYGAMDGAMKFVKGDAIAAIIVILVNILGGVIVGVFQHGMSAGEAATTYAVLSVGDGLIAQIPALLISIAAGIIVTRVPGEQRQNLAKDLSEQIGRQPQSLMISGGVLVIFAIIPGFPAVVFLPLAVMVFAAGWVGVKRRKARGQSADGSPVGEHGEGAEGQMSPGAQPLALHVATDLKSDLLQKAIERLRSEKFDNLGVPLPEIRLHVDPAMEAGHFEIQLYQERILRMEAPPNWLLLDVASTTMPDVKRLDKLPFGGMVLQWMDVTAAQSLASVGIKYYQGEERLVHCMSLTVDRYASEFIGVQETRFLMDAMEGRYGELVKELQRQLPIGRVAEVLQRLVEEGISVRDLRAIFEALIEWAPSEKDPIMLTEYARLGLRRHIISRHRRGREWISAFTIGDHIENLIRDSIRQTAAGAYSALDHQQNQEILGRIRKSLGEDSDNKHTVLLTAIDVRRFLRKIIEREMFATPVLSFQELGDEAELRVLGNIDLIGGGEYAPA
>NZ_CP041730.1|WP_143855993.1|254849_255215_-|hypothetical-protein
MDLQIERQLERFFVLMGFPNVRIETKMEFWLPPFRLFVEVRNRRISLSVAISVSPVGSMAQLRQALMLCIPERTMGVPMRAFLISNWLVLSCHLPEGMDESRWLRLYRIQCKLLQNVVSES
>NZ_CP041730.1|WP_143855994.1|255431_256505_-|TyeA-family-type-III-secretion-system-gatekeeper-subunit
MNKIDKPVFIPSTPIVSVDPDADIGKWADRTPRQIIPGNAISDLVGKELAELNEDALAETQEDMGFVLGGRMRELARGNAKSDTARARTNLLRLVEDISAVEAVGLDDLLGRFGDLANHANPFEAMREAGLDSGQMALLLGIWLTDKNLTGGRRKRLEEALLAVMGDEEWELKLFAQLEFGKPSPAALAQLKALYQRAGARHTSLSQWFAELKSMPDSKRKLKALLRALAFELSSQGAPIEGNRLVAVIMDLRRILLFFGFEEHARKTTQVFPAWGMNADQYMSELLQTIDQVWVSMDWFSGRVQALGLAENLRYGYGRAFTETMRLLSRDCFKEDMQRDEILQAIKDYLEELTADE

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Crispr_ID: NZ_CP041730_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041730_2

2579982-2580116

Orphan

Consensus_repeat	Method
CGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041730_2

>merge|NZ_CP041730|2|2579982-2580116|CRISPRCasFinder
CGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGTTCGAGTCCCGCACGACCCACCAGGGAAACCGAAGTAATATTCGGGGCGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGT

>NZ_CP041730|2|2|2579982-2580116|CRISPRCasFinder
CGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGT	TGGTCGCAGGTTCGAGTCCCGCACGACCCACCAGGGAAACCGAAGTAATATTCGGGG
CGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041730.1\|WP_144278364.1\|2571571_2573149_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225112
NZ_CP041730.1\|WP_144278381.1\|2589311_2591135_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NZ_CP041730.1\|WP_144278369.1\|2576617_2578594_-\|RNA-helicase	unknown	unknown	gnl\|CDD\|350671
NZ_CP041730.1\|WP_144278365.1\|2573375_2574266_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|223880
NZ_CP041730.1\|WP_144278378.1\|2585388_2586582_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379646
NZ_CP041730.1\|WP_144278367.1\|2574995_2575409_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP041730.1\|WP_144278376.1\|2583235_2584387_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_144278372.1\|2580305_2580530_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_144278370.1\|2578789_2579284_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235571
NZ_CP041730.1\|WP_144278375.1\|2582710_2583226_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_144278380.1\|2588555_2589227_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_144278366.1\|2574520_2574826_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|227001
NZ_CP041730.1\|WP_144278374.1\|2581289_2582543_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|377920
NZ_CP041730.1\|WP_144278371.1\|2579292_2579712_-\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319965
NZ_CP041730.1\|WP_144278363.1\|2571129_2571648_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP041730.1\|WP_144278362.1\|2570518_2571112_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP041730.1\|WP_144278379.1\|2586771_2588505_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377406
NZ_CP041730.1\|WP_144278368.1\|2575545_2576610_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	unknown	unknown	gnl\|CDD\|236435
NZ_CP041730.1\|WP_144278377.1\|2584558_2585203_+\|DNA-oxidative-demethylase-AlkB	unknown	unknown	gnl\|CDD\|237957
NZ_CP041730.1\|WP_144278373.1\|2580772_2581303_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_CP041730.1\|WP_144278364.1\|2571571_2573149_+\|PAS-domain-containing-protein	gnl\|CDD\|225112	COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms].	9.2005e-07
NZ_CP041730.1\|WP_144278381.1\|2589311_2591135_-\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	6.63616e-116
NZ_CP041730.1\|WP_144278369.1\|2576617_2578594_-\|RNA-helicase	gnl\|CDD\|350671	cd17913, DEXQc_Suv3, DEXQ-box helicase domain of Suv3. Suppressor of var1 3-like protein (Suv3) is a DNA/RNA unwinding enzyme belonging to the class of DexH-box helicases. It localizes predominantly in the mitochondria, where it forms an RNA-degrading complex called mitochondrial degradosome (mtEXO) with exonuclease PNP (polynucleotide phosphorylase), that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. Suv3 plays a role in the RNA surveillance system in mitochondria; it regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates. It also confers salinity and drought stress tolerance by maintaining both photosynthesis and antioxidant machinery, probably via an increase in plant hormone levels such as gibberellic acid (GA3), the cytokinin zeatin (Z), and indole-3-acetic acid (IAA). Suv3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.8555e-64
NZ_CP041730.1\|WP_144278365.1\|2573375_2574266_-\|TonB-family-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.20227e-08
NZ_CP041730.1\|WP_144278378.1\|2585388_2586582_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|379646	pfam14559, TPR_19, Tetratricopeptide repeat.	1.16393e-08
NZ_CP041730.1\|WP_144278367.1\|2574995_2575409_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.37535e-50
NZ_CP041730.1\|WP_144278370.1\|2578789_2579284_+\|hypothetical-protein	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	7.93679e-05
NZ_CP041730.1\|WP_144278366.1\|2574520_2574826_+\|c-type-cytochrome	gnl\|CDD\|227001	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion].	1.78324e-22
NZ_CP041730.1\|WP_144278374.1\|2581289_2582543_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	1.82328e-51
NZ_CP041730.1\|WP_144278373.1\|2580772_2581303_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.2055e-09
NZ_CP041730.1\|WP_144278363.1\|2571129_2571648_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	3.60538e-88
NZ_CP041730.1\|WP_144278362.1\|2570518_2571112_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	6.15729e-92
NZ_CP041730.1\|WP_144278379.1\|2586771_2588505_+\|hypothetical-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	1.52087e-08
NZ_CP041730.1\|WP_144278368.1\|2575545_2576610_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_CP041730.1\|WP_144278377.1\|2584558_2585203_+\|DNA-oxidative-demethylase-AlkB	gnl\|CDD\|237957	PRK15401, PRK15401, DNA oxidative demethylase AlkB.	3.07475e-141
NZ_CP041730.1\|WP_144278371.1\|2579292_2579712_-\|lactoylglutathione-lyase	gnl\|CDD\|319965	cd16358, GlxI_Ni, Glyoxalase I that uses Ni(++) as cofactor. This family includes Escherichia coil and other prokaryotic glyoxalase I that uses nickel as cofactor. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic glyoxalase I uses nickel. However, eukaryotic Trypanosomatid parasites also use nickel as a cofactor, which could possibly be explained by acquiring their GLOI gene by horizontal gene transfer. Human glyoxalase I is a two-domain enzyme and it has the structure of a domain-swapped dimer with two active sites located at the dimer interface. In yeast, in various plants, insects and Plasmodia, glyoxalase I is four-domain, possibly the result of a further gene duplication and an additional gene fusing event.	1.6027e-36

>NZ_CP041730.1|WP_144278371.1|2579292_2579712_-|lactoylglutathione-lyase
MKYLHTMVRVTDLDVSLRFYRDALGLQIVSRKDVEAGRFTLVYLAAPGDEDAQLELTFNWDPETYTGGRNFGHVAYRVDDIYATCQRLADHGVTISRPPRDGYMAFVRSPDNISIELLQAGGPLPPAEPWVSMPNVGSW
>NZ_CP041730.1|WP_144278370.1|2578789_2579284_+|hypothetical-protein
MPVTTHLVCAPDDLLPPAMVMEWLVPPGREVAADTPLVRLAVAGEPHLVLTPIAGILTEHCVALGEPLGASDLLAMIEAEEPEFGMALIAAEDADDNLRIPACRLGGGQAPQEWDGDALALCAALGLSPDEVPCAGRRLARQDVERHVRQELRALDAARELLRR
>NZ_CP041730.1|WP_144278369.1|2576617_2578594_-|RNA-helicase
MTVSTPAALDTVTAEVAAIGAHLQAHHATLVTVDGHYAVSVQGEVIVAGQAVGYHLVPDEGFLGKSGKWRRLSDSGRLSLLTERLNDAAREKLEAQLRQCALSVMKMADQYELDPAGPLHALQAKYELARDRCQVAMDRIEALRDRHGAARQAERTRDAVNLSLYPESFTTAQSMKRHFIAVLGPTNSGKTHAAMEHLVKAKSGVYLAPLRLLALENYNRLQAAGVPVSLVTGEQRKLHPDATHVASTVEMLNPHRVVEVAVIDEIQLLDDPDRGAAWTAAVCGVPAGTVYLLGAMEAREAIESLVKRVGGTLEVRILARKSPLEMEKQALGSLANLRNGDVLIAFSRREVLNWRDQVVERGFPVSAIYGNLSPEVRQAQAERFVNGETKVVVATDAIGMGLNTPARRIIFTTPYKYDGYAEGVIAAALAKQIAGRAGRFGEHEAGFVAGLDAHTHKIISVLLKQKPDPLPSTGFFVAPNLDYLQQIAAATGQSGLHPLLELFAKHINVHDEFFLPANLTEQMEKAKWLDGLDLPLADRFALSLCPVSTKIPLLERALQDWARTRADKGVAPLLQAENMGRHDLQFFEDSCKLYAAYAWLSYRMPDTFPDGDKAQTLMQSTSATIDRLLQVQNSLQRHSRRPQAPKRGDGRFNNRRPR
>NZ_CP041730.1|WP_144278368.1|2575545_2576610_+|3-deoxy-7-phosphoheptulonate-synthase-AroG
MLFKTDDVRIKEIKELLPPIAALEKYPVTEVATTTTFQTRQSIHRILTGEDDRLLVVIGPCSIHDPDAALDYGRRLLAVGEELARDLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDINNGLRLARKLLLDLNDMGVPASTEFLDMITPQYFADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIRSASVPHHFLSVTKFGHSAIVSTGGNPDCHVILRGGKTPNYSAEHVGAAVSSLTAAGLPEKVMVDFSHANSSKDFRRQITVGDDVAGQIAGGNHAIFGVMIESHIHEGRQDLIEGQPLKYGCSVTDACLGWDDSVQLLKTLAGAVSARRKGSSV
>NZ_CP041730.1|WP_144278367.1|2574995_2575409_+|RNA-polymerase-binding-protein-DksA
MVKKLTEEDVLKWNGDDYMNEDHLAFFRQRLLDMKAELLANATATSQHLQEQEATPDPADRATLEEEYALELRTRDRERKLLLKIDSTIKKIDDGEYGYCDDTGEPIGLPRLLARPTASLTVEAQERRERLKKQYAD
>NZ_CP041730.1|WP_144278366.1|2574520_2574826_+|c-type-cytochrome
MKLLFAALSAATVLTAQAAPDGRAMAAKYNCLACHQVDKKVVGPAFRDVAVKYRGDKKAESRLIEKVKKGGVGVWGQIPMPAQQISDADLKVIMQWVLSQK
>NZ_CP041730.1|WP_144278365.1|2573375_2574266_-|TonB-family-protein
MSVDTLEPAQPDNKIFMTTVGLSVLAHFLLIGAVRFSPPDPRTLFNRASLEIVLVNAQSKTAPAKADVLAQANLDGGGNTDEADRRIKTPLPAEQVENPSPELEQASKRQVEQETQLRKLLGNLQQAPKLSADAVKQSPSPSDAVLDLDTLRHQASEIDRKEGEIARELQAYQSRPRKAFVGARAKGVVEARYVDAWRIKIERIGNLNYPTNGQGKRLYGKLLITVEIRSDGSLHNVTIDRSSGDKELDEAARRILRMSAPFSTLPKGILDGTGKPADILSITRAWSFTRSDNELN
>NZ_CP041730.1|WP_144278364.1|2571571_2573149_+|PAS-domain-containing-protein
MRLCPAISITPKPVVRRPGSMPRIRMGYSFRLRCYAADYIVPPPRTGPAIVIVRKYFPSNPNLSNEAMLDGFKQGSAVMSGLRAVAFAMPLSRDRLLYLSLSASELYGEPVSVLYDHPNFWLEAIDPADKPAVWLGMDKLRQNGAGEAEFVYRLMSGAGDSTWVLHRCKVITNETGVPLRIDCLITPCQAPAPAAARHEIGNAVFAAAGDAMLVRDAASLDILDANTATLALLACSRGELLRQRLTDFSATTEGFDTRAEASHIDAARHGRPQRYDWLVAPREGDARWVEAVTSSLRHAGRDCLLTILRDTDRRHRELEQQALAVELVDRGRDPIAWANPAGQLLRLNAAGCELLGVHQDAVCDLFITDLLPVWAQPHFLHTCLPLATKDGIWRGEMGLVRRDGGNQPVMLTLLAHKRSGAIKGYSLVAQDIAVWKLKEQRYKRDKEELENDKLLKDKLLENVSAGLLPPLDQLRQIAQILERNPADVERALPHLKRAIEQARRLVDATTEYLKAGAQRDLPLKK
>NZ_CP041730.1|WP_144278363.1|2571129_2571648_-|crossover-junction-endodeoxyribonuclease-RuvC
MRILGIDPGLRTTGFGVIDIAGQSRIYVASGCIRSGEGSLPTRLKVLLEGIGEVCRLYQPEQSAVEQVFVNVNPQSTLLLGQARGAAISALVLAGLPVAEYTALQVKQAVVGNGHAAKEQVSHMVQRLLHLAGEPQADAADALACALTHANHASGGLANLGMKSRRGRWVSL
>NZ_CP041730.1|WP_144278362.1|2570518_2571112_-|Holliday-junction-branch-migration-protein-RuvA
MIGKLTGKLLEKHPPHILLDVHGVGYELDVPMSTLYVLPHAGETASLYTHFVVREDAQLLYGFATRGERETFRQLVKVSGIGPKIALAVLSGLTADELAMAVERDDAPRLAKVPGIGKKTAERLILELRGKLAGTTALHAHAAGLFVAPASARDDVVNALLGLGYNEREANAAIKGMPDDVSVNDGIRMALKSLAKV
>NZ_CP041730.1|WP_144278372.1|2580305_2580530_+|hypothetical-protein
MSKAHLTVRFQAAKRTTTSREGVVHTALSTEKSRSQAASRMKMGLGLQTQESQYLFSTEDAVNAVIHHKKVSFG
>NZ_CP041730.1|WP_144278373.1|2580772_2581303_+|helix-turn-helix-domain-containing-protein
MPRVHQVIFPAIARQLTELGERLRLARLRRNLTAVSFAERLDVSRDTLSRLENGDPSIAIGTYAKALRILGLDRDIDQIASDDVLGRKLQDLALPPRKKAASGTRRNAATGEFSTAPIRHSQKASKHGEPTRSGFAATHPESVRDDGNKPVTSSQKNRAFLANLLQKKAGTGNGES
>NZ_CP041730.1|WP_144278374.1|2581289_2582543_+|type-II-toxin-antitoxin-system-HipA-family-toxin
MAKAKPNRDEIEVYIDDDSLGRIRRVGTIYRDLHRTDSPISFQYDSDWIEAQDFTLDPRLALWKSEQHPPANNTSFGIFLDSAPDRWGRVLMERLEASRARKEGRAISNLQEMDFLLRVNDETRQGALRFRRVNGQYLDTGECSIPLVTQLAELQATCAKIESEGVEQLPEFEKLLAQLVAPGSSLGGARPKANFRERDLSLWIAKFPAKNDRYDVGAWEFVTHRLAHKAGIWVPPSYIAQFASNYRTFCVKRFDREGDSRRMYASAMTLLEKQDGEAASYLEMAQFIHEQGATGTIAADLAQLFRRVVFNVMVRNTDDHLRNHGFVRAANGWRLSKAFDMNPNRAKDSHAIALDDVSTDSELDLVMSTAEFYRLDARKAAAIVIEVAHVVGKWREEAKQVGLSAGELDTMGSIFQA
>NZ_CP041730.1|WP_144278375.1|2582710_2583226_+|hypothetical-protein
MTDTPSDQASDAKDSQEAIRSDRLWRDDTWTARVVKNEDDEGWAVEMYKSGEAEPALVGPWTMGRDKKNPKPLDTAAFTVLIKTASEVLRRHEQQRHAALHKRFTVSTATAEISVALEIVPDEDDPYALLSAHDAFGEELAQLRVAPNFVLNRASAAAWVADDFRKPAERA
>NZ_CP041730.1|WP_144278376.1|2583235_2584387_-|hypothetical-protein
MHNVNSATPITTMPQALPIAPAIQPTGLADYPLEIARDTAASGSGFLANLRNYFREMTDADAAVQVFTLMDFLEVRAVGNLNDTVRPLVSILEDALPQLTPRAINARESALNAADGPLMGGLRLIWGWLPLSPEREPGERFNAHVTCLTERAAKAAIQRSGLAATICMKPQERDDLVKTVASSEVFRQCILDIAHSFINIWTLNTLCKCVFAKNSIQLGLRNALDMQFGMAWPGPRATALDLPPQLCGIFAGPITDTQLDGAFRALARELEQHEQTHFGQPSRDALISRFIQLVCNGYTADLGDQPPPAINADVLDAFIASIAPFLPDRIDAALTRQALLVNVMAALPEHRDAIRHGLELGMVPANRWRGPPFPAQEADCSLQ
>NZ_CP041730.1|WP_144278377.1|2584558_2585203_+|DNA-oxidative-demethylase-AlkB
MSFELFDGLDPPTEEVLADGAVLLRGHTLASAPQLLAEMRAVTEQAPWRHLVTPGGFTMSVAMSNCGRQGWVSDRHGYRYSACDPLSGLPWPAMPALFAQLAREAAARAGYADFDPDACLINRYAVGAKLSLHQDKDERALGQPIVSVSLGLPAVFLFGTDRRTDRPRKHRLQHGDVVVWGGPSRLAFHGIEPLPLGDHLLTGRFRYNLTFRKV
>NZ_CP041730.1|WP_144278378.1|2585388_2586582_+|tetratricopeptide-repeat-protein
MAGYPYRILLVVALAAAMSSAWADELSEAEALLASGQAASAYRMLAPLEFQRAGEARYDYLLGSAALDSGRAAEATLALERILQRDPDHAGARLELGRAYYALGDDSRAKTEFETLLLLDPPAPAKQAIRTHLQAIAQRSQAKSTQLGGYLMAGVGRDNNLNFATDQARIFVPVFNGDLTLTSDSLGKRDNLLLAGAGADLTHAVNERLGLFAGADWQTRRYTHEKAFRYDTLALRFGMAFGTAANQLRLGGRPTICGRAATPIGIPAAQRWNGAISPVPVGNGALGANTAGCATNARIIGSTTATRPCLAPAMCIHSAAHGKVSCSRRCSAGRRMPCRIGRTATRTCWACGFPASSALGRTPRPGPRWGSSRRATNRIISCLPPAATTSNSTSASA
>NZ_CP041730.1|WP_144278379.1|2586771_2588505_+|hypothetical-protein
MHSKQSKAWYGLVVAAGLLATLSLPVEAGPAGRVQFVNGAVSVVGVGAGGVTRTPKKGDVISEGEFINTGPDGNMQIRMNDDGIVAVRPNTRLRIDIFQYQGKQDGSENSVFSLLKGGFRAITGAVGRLNKDKYSVQTPTATIGIRGTDHEPFFIPEGSTEFGSAPAGTYDKVNVGQARIQTAAGMVDINPNQVGFAAGVGSRPALLPSVPAFFRATSQTSQSKSKASGQQQGEVAAVEAPAEQQAASQTATQRPTVATVEGLDGVRIDLTSQRATDNAGNPIDLNGQPLAGGVLAGALIDKQSDNRQGAGAGSADGARVRLGADGGLVAISDGIDRQLTRGSALLADRGGNLLNVGGVAIPVEWGRWDQTPPDHVFDSTRSGLDNDHLGSLHYIYGPSLTPAGKLDATSFGAAAGRYSLVGGTHPTSQRAGEAGRLEDMQMVVNFSAQRIDGYALKLSFGERVFRAINAEKVRLTPRFEFGLIGKCTGCGTNEDLIGKAAGGFVGPTANGVLTSYGLNSLGSVERAVGTALLGMAETYTTPPELPPLPTTPIPPEPEPPEPPEPPVPPCRLPPRSW
>NZ_CP041730.1|WP_144278380.1|2588555_2589227_+|hypothetical-protein
MHVGGITLDSADNVKAIDGAGGYTFRSNTAFVEDTGSIVLPDGGGGIKVNWGRWESAPPSHVFQVTSGGQAKPDVNAFYFMYSDRLTPADKLSSAVHSGVRATYQLVGGPAPTSQSNGEMGTLHNLSVLVNFGSQQIEQYQLAVHFAHQSYNASNTAPVPITPTFSVGLAGTCTGCTQSGTVPVGGTAHGAFVGNLAEGIMTSFGFGTSGGNRAVYGNGVLKR
>NZ_CP041730.1|WP_144278381.1|2589311_2591135_-|S8-family-serine-peptidase
MKSSNKWVATLSQSALAVSLALAAAPGWAAVAKGQALQSTDRIILKYRNSGISAVQAAGASGAKAMANVQMQRQSRLQSVAARFGGTVQLLRHGASGYQVYKLERTRTLEEVRAMAAQMAKADANIDYAEPDRILRPMAAEPNDTRWADQWDLKNSLVGINAPAAWDLSTGAGVTVAVLDTGYTAHADLMANIVSGGGYDMISDPEVSRKTAGRKANALDAGDWTVRFNECGDRQPAMGSSWHGTHVAGTIAALTNNGSGVAGIAYNARILPVRVLGHCGGYTSDIADGMIWASGGTVADVPRNTTPARVINLSLGGPGACDRTQQDAINLARANNSVVVVAAGNDGVDAGDSNPANCAGVVTVAALRKNGGLASYSNFGTVVDISAPGGEDETRAEGITSTMNAGTTVRGADTYKPYAGTSMATPHVAAVAALMIAAKPSLTPDQVEALLKSSSRPFVTTCQSADGSRVACGTGMLDAYAAVRAAIGDTLPGNSETEPNNSLATANAVAAPATLNATISTTADEDWFKVSLPAGKTLTATMTPANATSDFDLFIYDERSNQLAASELSAGKVDKASWKNNGTTTVVRYVKILRFASTGKYTLKLEW

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Crispr_ID: NZ_CP041730_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041730_3

5143354-5143437

Orphan

Consensus_repeat	Method
GGCGCTAAAGCGCCAACAACCACGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041730_3

>merge|NZ_CP041730|3|5143354-5143437|CRISPRCasFinder
GGCGCTAAAGCGCCAACAACCACGCACCACCCGCAAGGAGTAGGCCGTGGTTGTAAGGCGCTAAAGCGCCAACAACCACGCACC

>NZ_CP041730|3|3|5143354-5143437|CRISPRCasFinder
GGCGCTAAAGCGCCAACAACCACGCACC	ACCCGCAAGGAGTAGGCCGTGGTTGTAA
GGCGCTAAAGCGCCAACAACCACGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041730.1\|WP_144280430.1\|5151003_5152101_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|182893
NZ_CP041730.1\|WP_144280423.1\|5138886_5140869_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP041730.1\|WP_144280425.1\|5142408_5143326_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NZ_CP041730.1\|WP_144280420.1\|5136059_5136947_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP041730.1\|WP_144280418.1\|5133819_5135535_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379164
NZ_CP041730.1\|WP_144280427.1\|5147187_5148078_-\|maltose-ABC-transporter-permease-MalG	unknown	unknown	gnl\|CDD\|182891
NZ_CP041730.1\|WP_144280431.1\|5152147_5153812_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200469
NZ_CP041730.1\|WP_144280800.1\|5145478_5147122_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|236543
NZ_CP041730.1\|WP_144280422.1\|5138052_5138682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_144280433.1\|5155492_5156116_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP041730.1\|WP_144280421.1\|5137000_5137918_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238064
NZ_CP041730.1\|WP_144280428.1\|5148136_5149660_-\|maltose-ABC-transporter-permease-MalF	unknown	unknown	gnl\|CDD\|236816
NZ_CP041730.1\|WP_144280429.1\|5149769_5150951_-\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	unknown	unknown	gnl\|CDD\|236533
NZ_CP041730.1\|WP_144280419.1\|5135570_5135858_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|226366
NZ_CP041730.1\|WP_144280416.1\|5132243_5132909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_144280432.1\|5153952_5155236_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|367007
NZ_CP041730.1\|WP_144280417.1\|5132905_5133823_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041730.1\|WP_144280426.1\|5143459_5144473_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP041730.1\|WP_144280424.1\|5140809_5142036_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP041730.1\|WP_144280799.1\|5144576_5145422_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|381318

Protein	Function_ID	Function_description	E-value
NZ_CP041730.1\|WP_144280430.1\|5151003_5152101_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|182893	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK.	0
NZ_CP041730.1\|WP_144280423.1\|5138886_5140869_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	7.85795e-84
NZ_CP041730.1\|WP_144280425.1\|5142408_5143326_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	3.27895e-106
NZ_CP041730.1\|WP_144280420.1\|5136059_5136947_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	7.18326e-41
NZ_CP041730.1\|WP_144280418.1\|5133819_5135535_-\|hypothetical-protein	gnl\|CDD\|379164	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like. This is an N-terminal domain on a family of putative Flp pilus-assembly proteins. The exact function is not known. The Flp-pilus biogenesis genes include the Tad genes, and some members of this family are putatively assigned as being TadG.	1.41306e-06
NZ_CP041730.1\|WP_144280427.1\|5147187_5148078_-\|maltose-ABC-transporter-permease-MalG	gnl\|CDD\|182891	PRK10998, malG, maltose ABC transporter permease MalG.	3.45702e-167
NZ_CP041730.1\|WP_144280431.1\|5152147_5153812_-\|alpha-glucosidase	gnl\|CDD\|200469	cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP041730.1\|WP_144280800.1\|5145478_5147122_-\|alpha-amylase	gnl\|CDD\|236543	PRK09505, malS, alpha-amylase; Reviewed.	0
NZ_CP041730.1\|WP_144280433.1\|5155492_5156116_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	1.16936e-96
NZ_CP041730.1\|WP_144280421.1\|5137000_5137918_-\|hypothetical-protein	gnl\|CDD\|238064	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).	0.00383979
NZ_CP041730.1\|WP_144280428.1\|5148136_5149660_-\|maltose-ABC-transporter-permease-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	0
NZ_CP041730.1\|WP_144280429.1\|5149769_5150951_-\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	gnl\|CDD\|236533	PRK09474, malE, maltose/maltodextrin ABC transporter substrate-binding protein MalE.	0
NZ_CP041730.1\|WP_144280419.1\|5135570_5135858_-\|pilus-assembly-protein	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	0.00665094
NZ_CP041730.1\|WP_144280432.1\|5153952_5155236_-\|carbohydrate-porin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	1.64155e-113
NZ_CP041730.1\|WP_144280426.1\|5143459_5144473_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	3.31246e-167
NZ_CP041730.1\|WP_144280424.1\|5140809_5142036_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.44639e-60
NZ_CP041730.1\|WP_144280799.1\|5144576_5145422_-\|oxidoreductase	gnl\|CDD\|381318	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins. Bacillus subtilis YcsN and Escherichia coli YdhF are prototypes of this family. They are uncharacterized aldo/keto reductase family oxidoreductases.	1.39652e-143

>NZ_CP041730.1|WP_144280425.1|5142408_5143326_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MSTSTPHDALFKNFLTDPNTARDFLKVHLPPALRDRCDLSTLRLESSSFIEPDLCAFYSDILYSVETAGQDGYIYVLIEHQSTAERHMAFRLMRYCIAAMHNHLKQGNDRLPLVVPLLFYHGRASPYPYSTDWFELFDQPKTAIELYTRPFPLVDITVIPDEEILQHKGIALLELVQKHIRQRDMLQFVEELIWLMQSNPCTPDQLRSLLNYITQEGGTSQPQVLFEALASGAPQYGEFVMMTIAEMFEQRSLEREQRGLEQGLEQGLELGRQKLIQVARGMLEKGMDKAAVMQLTGIGESDLEE
>NZ_CP041730.1|WP_144280424.1|5140809_5142036_+|diguanylate-cyclase
MYPMLRSGIVPDGVRQDMLHINPELLSNSSQSAYGRAFEQGYRGLRFEGALEQEFQRFYLSTHLVRLRWAGFLAITLFGLFVLVDVFTLPLYVSQWTASIRLGLIIPAFGVGLWISYRSEWHHHLQLSVFIAALITGLGTVGVIAVALAQNYPIPYEGILLVALFIYFIACLQWWRALLANLVTVLAFVIMEALCQTDPSQRLYQIIFMFTANAVGATGSYFLEYSTRTTFLVHALLNELAERDGLTGLYNRRTLNNHLDKVWRQAIRDGRQLALAMIDVDYFKRYNDHYGHAEGDRVLRQVADVIAGQARRPLDLAARYGGEEFALVWYQPTASELAPMGEQLREAIADLCLPHAGSETGRLSVSIGIALLRPSGEQHAETLLRAADTALYEAKQAGRDRVVVVGTI
>NZ_CP041730.1|WP_144280423.1|5138886_5140869_-|tetratricopeptide-repeat-protein
MQHVLANPVGNNAGAKHRIHSQAAQRPSFVSVVRMPRADSGSCILATQRLSCRTDKGPEAGAGMRQAGAALLRGVGLHLFLFAAGRRLLAAERYLSAELYLQAASRLAPTRADIWLALASCLQCRHCPHAAIDILQKVLELAPDMAEARLRLAHSAAEAEMWPLAIERFEQLLAESPGSPQLHYHLAGSYAGDGQLEKAVQHFRAALAVEEVASTHNGLGLALSELAMQEESIAHFRRAAELSDKPAYLSNLLFTLCYDPALSPEALYQAHIKQAARFPQAQARKWRQSFDPERPLRIGYVSPDLRFHPVAFFIEPVMREHDASRYQIHAYSTQMHRHSETTLRLKASCADWREFDDAEDEALEAAILADRIDILIDLAGHTGNNSLPLLAKRLAPVQVSWLGYLNTTGLAAMDYRLTDATACPTAFAQPLHSEQLIHMPHSQWCYQAPADSPPVAPAPCLSQPGTTFGALHNPAKVGPAVIALWAGLLRAVPDARLLIAARGFSRIAAETRARFAALGVAEERIVIRDRQTFADYLSMHGEIDINLDVFPYTGGTTTCHSLWMGVPVLTLACPSVMGRGGASALHCLALDDWIAASEEDYIAIGRRMAAAPARLAALRQDLRERMAHSPLMQAEPFTRALEARLREMWRQRCLEASVRS
>NZ_CP041730.1|WP_144280422.1|5138052_5138682_-|hypothetical-protein
MQLYNTYPANSGVTATRIDDQVYAGSGKSSSVEEVLRAQCEDEVESMRKYFDKEQEEVLQRLHSTDDPLQVGVARLKAGRCVEASDLFRQADDMGGERFEGIPVLREAAERKIQAADVHVEDARHHVEQANWEEATQAYKQALAICKDHPEARKGNIRAEREVALKANLAAFAVEQAASEAAKEAAAQREAAALEMVSRQTLASPCAVQ
>NZ_CP041730.1|WP_144280421.1|5137000_5137918_-|hypothetical-protein
MHLSNACEIWSSLPPPPPLAGKPSRLNLAIAQLKQNNADSSCLDLSAYHFRAGEALELGKRLAENDSVVSLDLRNCNLGPDDVRDLLAGLALNRNIKILDLTGNQTMGAVGCKALCEMVKKRPCPLEKLKLDADLPGVEEADMRIADPLPDRDTNELLDLVACEQEMLLQRLHRTSHPFEEGKKRLEEGQCKEAGELFRQASELARYEGQSEEIMACLAEADVKIQAADELVDQARRHAEKAEWEEAGQAYGQALEICKDHLAATVGKIKAQWMAQSPREVIPAIEERAPEVVLPPAQTPSCALQ
>NZ_CP041730.1|WP_144280420.1|5136059_5136947_+|sel1-repeat-family-protein
MRFAPLLLLITALYSQADFQAAREAYQAGEFAKAAKGFTEAANQGDVRAQAELGQMYERGEGVQADYGRALSWYRKAADKAYLPAQVSLGYLYERGLGIARDYGQAMQWYRKAADKGSALGQNNIGYLYENGWGVKQDFAQAVEWYRKAVDQGLPLAQTNLGFLYAEGRGVPKDDAQAVLLYRKAADTGFAQAENNLGYMYASGRGLKQDLQEARSWYGKAAADGNGQAMVNLALLYQNGRGVPQDSGKAVEWLNKAATANYRPAIQRLAKLYREGAWGLKVDEVAAAGWESKLN
>NZ_CP041730.1|WP_144280419.1|5135570_5135858_-|pilus-assembly-protein
MKKIDTLRQAMRQLPRRQSGQGMTEYIIIVALIAVAAIGVYSFFGQTIRNQVSGLASEVSGDTSGAAAARSAATASASSARSQGTKAKGMGSYGN
>NZ_CP041730.1|WP_144280418.1|5133819_5135535_-|hypothetical-protein
MDWQAQSGFRPAKGQSGQALVFSLITLAVVILVLLSTFNVGQQTLGKMRLQNAADAAVYSAVQAQARDYNFSAYTNRAMVANEVATAQVVGLTSWSRNFNKTYTSEFTWVPRMLTALGGPLANWMWNTPWNLNKNISKGFQSAMNASGPVLAKLLDGINLALDTAQLVYHYGTALTMAQTLGMNLVDPGGGTGLLDKLGMDTSFMAGTAVGDMLTLDPRHNILQMNDPEASLTVGGWAATAVSLYNWLRFTERKDPNTKPAASKFGDCAEKGCGSATDATPDRFAQVTMNSLDDFSRDRSTRNGWYDGAPEVFYITPNPFVIDPTRFIPYQNGAFLMWLWHRGGTELKSVTAGGSTKGHSKKTWTALDATGFTGAAIFWISILGIPIPIPIVIPTMPMGWGSAQAGVQISGAGALATNNNFSTPADEAYGGVYNGFMTAMPAQRQRPQGAGTTLGGQGLRPYFDIRDPSKDNLVGPTLLIEVERKASTVPSSNKFSGGRFSMVNGNPGGDDSMRALASAQAYFARPNKLRADWKREDNKVELGSLYNPYWQTRLAPNSFLEKYASMMLQLL
>NZ_CP041730.1|WP_144280417.1|5132905_5133823_-|hypothetical-protein
MKRLPMRRQHGQAMLETMIAASMVLVPLFLALPTLAKYLDIRSHAVQAARYAAWERTIYFGGPSASEIGWGSFTNAWVANEKNDNQIKAEVATRILSSNSATSNFSSSDKNAGDFRAGKRKLLWQDRKGQSLIAYGQVQGTAGQTCDPAGDFSSAMLGYDCAPGTINRVLMPVATLASILGPFTLEMGGKYTATVTLSPSNFSRQSYLVDTALASQPMREKLVVLGNGWSADGPNADDKTSVLQQVKGLTPLSLLATEVSIPTIGTISIIEVVQTVFSIWAPELSPRKLEVGKIVPDEVPPDRLQ
>NZ_CP041730.1|WP_144280416.1|5132243_5132909_-|hypothetical-protein
MRRLAALSLLCCPLLPLASECPEFAAPPEARLSLVAQRMLINGVPMAVMQIDSPQAPAALLAHYRRVWSAGGEVTEYPVGAWQAIATARAHCFYTFQVKPAGRGASGFLSISDADNGSVRQPSAFPMPGGSQLINDIQHEDAIRNGRTVFLSNALTMESNAIFYRNNLMAQGWNIATERRLNTKRGPGIVFDLQRPPNLAMLTISRSEGRTYVLFNYMDKP
>NZ_CP041730.1|WP_144280426.1|5143459_5144473_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIRIAINGYGRIGRNVLRGLYEYQRRDEFEIVAINNLGEIEVNAHLTEYDTVHGKFAAEVGYEGEHLLVNGDRIRYLSVRDPAQLPWRELGVDVVFECTGLFTSKAKASAHLAAGAKKVVISAPGGDDVDATIVYGVNDQVLKAEHTVISNASCTTNCLAPLVAPLHAALGMEAGLMTTVHSYTNDQVLTDLYHSDLRRARSATMSMIPTKTGAAAAIGLVIPELAGKLDGLAVRVPTINVSLVDLVFSASRDTSVKEVNAILEAAAAASKDGILSYVTKPLVSVDFNHNRASSNFDSSQTKVTNNRLVKVMAWYDNEWGYSNRMLDTCKALMNAR
>NZ_CP041730.1|WP_144280799.1|5144576_5145422_-|oxidoreductase
MGIWRIGDWGMRPAEVADLVEACLELGIDTFDLADIYHDYQCEAMFGAALKTVPGLRSRIRVISKCGIALRSAHRPAHRVKHYDTGTAHILASVDNSLSAMGVEKLDLLLLHRPDPLMDADEVAAAFAQLKQSGKVVRFGVSNFLPRQFELLQSRLEEPLAANQVQLSLLHTDALFDGTLDQCQQRRVMPQAWSPLGGGRLAAAPASSGLGAVLARLGAELNASPEQLAIAWLLRHPAGIHPVIGSGKLDRIKQLQAAQALDLDRQAWFELLEAASGHEVP
>NZ_CP041730.1|WP_144280800.1|5145478_5147122_-|alpha-amylase
MPRPAVAPAAPIAAETSPVAGMAANPIVYFVLTDRFLNGNPANDRSYGRSPDGDKEIGSFHGGDLAGLTRRLKEGYFQRLGVNALWISAPYEQIHGWVQGGKAEFKHYGYHGYFALDYTVLDRNMGTAEELREMVDTAHAQGIRVLFDVVMNHPGYLDIETATQLSIPVLWPEAAQKYTLSDYHGWIDYNADKQRWAQWWGGDWVRAGLAGYREGGSDDFSKQLAFLPDFRTDNAQPVGLPPFLAGKSDSRAKPLPNATVREYLVSWLSDWVREYGIDGFRCDTAKHVEPASWQALKTASNAALADWKARHPRKKVDDAPFWMVGEVFPHGVERDDYYQQGFDSLINFDLQDRKLDEPAELDRLYSEYALALAAGRAGGRTFDVLSYLSSHDTRLYRRDRLMQAGSALLLAPGGVQIFYGDESARPAGPASAGDPQQATRSDMNWASPDLAVLAHWQKLGSFRARHVALARGSHQRLSQMPYSFARVLGQDRVVAAPFATGAVEIPVQDVFRDGEKLRDAYSGASVTVIAGRVKLQAAGTVLLEAMD
>NZ_CP041730.1|WP_144280427.1|5147187_5148078_-|maltose-ABC-transporter-permease-MalG
MAIVLDKSHRWRVLAAHLGLICFIGLILFPFLMILAISLRPGNFASGDLIPSQISLEHWKLALGIAYQAPDGRLIQPEFPVLLWLWNSIKVAALSGVIGLVLSTSCAYAFARMRFVFKTQLVNGLLLIQMFPTVLALVAIYAIFDQLGNYVPWLGLDSHGGLVLAYTGGIALHIWTIKGYFDTIPVEIEEAAKVDGATPFQAFRHVLLPMAVPILMVVFLLAFIQGVNEYPIASVLLKQQDQLTIAVGIKMFLYEQKYLWGDFAAAAILSGLPISLVFLLAQRWMTAGLTAGGVKG
>NZ_CP041730.1|WP_144280428.1|5148136_5149660_-|maltose-ABC-transporter-permease-MalF
MTRKLEHWILLLVAGFVLLAGLFLTFKIYLAGQALLAVVCLAILGVAVFVYSSAKAYAFRYLFPGLLAAVVFVLFPLAYTFGIGFSNYSSKNLLSFERARQYFLDESYVVDGESYAFTLHADGPSYRLRLENDKGDVFVTGPLALKPLAVSVPAKRQESSDAPLSEPVDTRTLIAHLKALKQLTLQLPGGQSASASGLREFAPVRKLYVESADGSFKNQQDGTSIKPNFQTGFFETAGGEALQPGFKVNVGWDNFKRIFTDSSFSDPFLRIFGWTVLFSALTVLFAFSVGFVLAALMCWEALRFRKIYSVLLFLPYAVPGFISILVFKGLFSENAGEINLILEGLLGIKPHWFTDPFLAKVMLLIVNTWLGFPYMMLLSMGLIKAIPADLYEASAIAGAGPVTNFLKITLPLIVKPITPLLISAFAFNFNNFVLIALLTNGRPDFLDTKVPAGTTDLLVSYTYRIAFQDSGQNFGLAAAISTVVFLMVAALSLLNLRLTKANQGGAH
>NZ_CP041730.1|WP_144280429.1|5149769_5150951_-|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE
MTVNCKTMIAAVIAASFGTAHAAEAGKLLLWINGDKGYKGVQQVGEDFAKKSGVAVLVEHPEDATGKFQQAASAGKGPDIFCWPHDRAGEWVGAGLLSPVTPSKKIKEEIDPLAWKAFSLGGKTWGYPIAIEAVSLVYNKDLVPNPPKTFEEIAALDKKLAAKGKKAILWDYTNTFFTWPLLAAGGAYPFKQKADGSYDATDTGVNNAGALKGVETLKGLIDSGAMPKGAGYAEMEAGMAKGNIAMMINGPWSWDNLKNAKINFGVAAIPTVAGKKAAPFVGVLGCMVNRASPNKEIAVDFIENHLLSLNGLKTINADVPLGVPASKAFFKELAGDANIMATMASAQAGNPMPNNPEMGRFWSSMASALQNVTGGRQSPKDGLDAAAKRIKGQ
>NZ_CP041730.1|WP_144280430.1|5151003_5152101_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MSEVVMRGIRKSFGEIETLHGIDLDIRDGEFVVFVGPSGCGKSTLLRTIAGLEDISAGDLMIKGKRCNDVPPSQRGVAMVFQSYALYPHMTVAENMAFGLKLAGVGKAEIKQAVDRAAKILQIEPLLERKPKALSGGQRQRVAIGRAIVRKPEVFLFDEPLSNLDAALRVQMRIEITKLHRELNTTMIYVTHDQVEAMTLADRIVVLNAGNVEQVGSPLALYHHPRNLFVAGFIGSPKMNFIEGRLLSATDQLATVQLADGSQVGAAVDARDGQVGARVTLGIRPEHGCFGGEGNTISGQLIAVEHLGEATVLYLQVAGAAEHLVVRADADHAAKAGETITVQLPANRCYLFNEAGAAFARHTAA
>NZ_CP041730.1|WP_144280431.1|5152147_5153812_-|alpha-glucosidase
MTQQHPQNWWRGGVIYQIYPRSFADSNGDGVGDLAGIREKLPYVASLGIDAIWISPIFKSPMKDFGYDVSDYCDVDPLFGDLAGFDALVAKAHELGLKVVIDQVLSHCSDQHAWFRESRSSRDNPKADWFVWADPQADGTPPNNWLSVFGGSAWQWESRRRQYFLHNFLSSQPDLNFHSPAVQAAMLATVRFWLERGVDGFRFDACNFHFHDAKLRRNPPARSRDSKTVSAENPYGLQAHKYDKSQAENIDFLRQLRQLLDQYGAASVGEVGDDNSLKLMAQYTSGGDKLHMAYSFNLLTGDGSAAYIRQQVEELEAQLKKTGKQDGGAGWGCWSIGNHDVARVLSRWNQAGSVPAEDAQRAKLLLAMSASLRGSLCIYQGEELALREADIPFEQLQDPYGITFWPDFKGRDGCRTPMPWQGELAHGGFSSAKPWLPVPQAHLARAVDSQEGDADSTLNFYRGFLAWRKQQDVLKTGDIAFIDCPEPLLLFTRELNGQTVVCAFNLGARPVSFTLPRKLRSARLLTGHGLGGGSLADGELALDGFGGLFARIEN
>NZ_CP041730.1|WP_144280432.1|5153952_5155236_-|carbohydrate-porin
MNRKTKLFAALFAAFTAQAAMAAAVDYHGYIRSGSGAASEGGREVCFGLAGAPAFGGKVASAGRLGNECETYGELSFDAKMGESDGMNFGFHQMLAFSTAQKGDWEEATPAWRQVWVEAGNIGTGALSKASLWAGKRFYKRHDVHIADFFWSANTGPGAGIENVDLGFGKFSYALMRNNGDDVKAVTNHDFRIEGIAANPGGSLEFGVNLVGKNAAKNAAGQKADGKNGFGFTVAHSQDNPFDLGGFNSVVFQYAKDAANLDQSAGFTGDSKKSWRVIEHLVFEPKDSNWNGAVFLGYGQEKYKDAKAAKTFTAIARPVYHFSQNYSLALEAGTTSVKPSAGDTQRISKLTIAPQLSMGKSFWARPVLRAYYTYAKWNDAAQKSALSQMSGATQKYPGGVAGGHDSAAAYANKTSGSSYGVQMEAWW
>NZ_CP041730.1|WP_144280433.1|5155492_5156116_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKIRDIMRASPVMPVIVIDRLEDAVPLAQALLDGGIRVLEVTLRTPVALAAIKAISAALPEAIVGIGTVTRPEQFAQAKAAGAVFAVTPGLTEELALAAKQADIALLPGVMTPSEVMAAQAWGFDAMKLFPAEQAGGIGMLRALSGPFADVLFCPTGGVTVESAPKYLALPNVACVGGSWLLPKDRIAAGDWPAIARLARAAAALAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041730_3	3.1\|5143382\|28\|NZ_CP041730\|CRISPRCasFinder	5143382-5143409	28	NZ_CP041730.1	2794410-2794437	0	1.0
NZ_CP041730_3	3.1\|5143382\|28\|NZ_CP041730\|CRISPRCasFinder	5143382-5143409	28	NZ_CP041730.1	3427128-3427155	0	1.0
NZ_CP041730_3	3.1\|5143382\|28\|NZ_CP041730\|CRISPRCasFinder	5143382-5143409	28	NZ_CP041730.1	3639755-3639782	0	1.0
NZ_CP041730_3	3.1\|5143382\|28\|NZ_CP041730\|CRISPRCasFinder	5143382-5143409	28	NZ_CP041730.1	4047036-4047063	1	0.964
NZ_CP041730_3	3.1\|5143382\|28\|NZ_CP041730\|CRISPRCasFinder	5143382-5143409	28	NZ_CP041730.1	1038913-1038940	2	0.929

1. spacer 3.1|5143382|28|NZ_CP041730|CRISPRCasFinder matches to position: 2794410-2794437, mismatch: 0, identity: 1.0

acccgcaaggagtaggccgtggttgtaa	CRISPR spacer
acccgcaaggagtaggccgtggttgtaa	Protospacer
****************************

2. spacer 3.1|5143382|28|NZ_CP041730|CRISPRCasFinder matches to position: 3427128-3427155, mismatch: 0, identity: 1.0

acccgcaaggagtaggccgtggttgtaa	CRISPR spacer
acccgcaaggagtaggccgtggttgtaa	Protospacer
****************************

3. spacer 3.1|5143382|28|NZ_CP041730|CRISPRCasFinder matches to position: 3639755-3639782, mismatch: 0, identity: 1.0

acccgcaaggagtaggccgtggttgtaa	CRISPR spacer
acccgcaaggagtaggccgtggttgtaa	Protospacer
****************************

4. spacer 3.1|5143382|28|NZ_CP041730|CRISPRCasFinder matches to position: 4047036-4047063, mismatch: 1, identity: 0.964

acccgcaaggagtaggccgtggttgtaa	CRISPR spacer
actcgcaaggagtaggccgtggttgtaa	Protospacer
**.*************************

5. spacer 3.1|5143382|28|NZ_CP041730|CRISPRCasFinder matches to position: 1038913-1038940, mismatch: 2, identity: 0.929

acccgcaaggagtaggccgtggttgtaa	CRISPR spacer
acccgtaaagagtaggccgtggttgtaa	Protospacer
*****.**.*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041730_1	1.1\|243962\|34\|NZ_CP041730\|CRISPRCasFinder	243962-243995	34	JN638751	Bacillus phage G, complete genome	18607-18640	9	0.735

1. spacer 1.1|243962|34|NZ_CP041730|CRISPRCasFinder matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 9, identity: 0.735

tgaaggaagtttcgcttaattgattgatttcgtt	CRISPR spacer
atttagaagtttctcttaatttattgatttcatc	Protospacer
    .******** ******* *********.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30839 : 107025

uncultured_Caudovirales_phage(21.62%)

head,plate,transposase,terminase,capsid,protease,tRNA,integrase,portal,tail

attL 55929:55985|attR 107111:107167

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143855809.1\|30839_31736_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.2e-25	33.8
WP_143855810.1\|31991_36032_+	hypothetical protein	NA	NA	NA	NA
WP_143855811.1\|36165_37956_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	2.3e-21	29.1
WP_143855812.1\|38046_38709_-	DUF502 domain-containing protein	A0A2I7S9X1	Vibrio_phage	3.9e-11	28.2
WP_143855813.1\|38737_39028_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_143855814.1\|39287_39722_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_143855815.1\|40036_40717_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_143855816.1\|40776_41535_+	TSUP family transporter	NA	NA	NA	NA
WP_143855817.1\|41814_42297_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_143855818.1\|42483_43341_+	response regulator	NA	NA	NA	NA
WP_143855819.1\|43337_44189_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_143855820.1\|44234_44693_+	response regulator	NA	NA	NA	NA
WP_143855821.1\|44729_45317_-	BON domain-containing protein	NA	NA	NA	NA
WP_143855822.1\|45306_45897_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	4.3e-17	36.4
WP_143855823.1\|45938_46280_-	YraN family protein	NA	NA	NA	NA
WP_143855824.1\|46324_47500_-	penicillin-binding protein activator	NA	NA	NA	NA
WP_143855825.1\|47536_48355_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.3e-43	42.6
WP_143855826.1\|48371_50864_-	DNA ligase D	NA	NA	NA	NA
WP_143855827.1\|50876_51785_-	Ku protein	A0A218M9C0	Mycobacterium_phage	5.4e-35	36.3
WP_144280533.1\|52017_52497_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_143855828.1\|52579_53782_-	alcohol dehydrogenase catalytic domain-containing protein	E3SJ82	Synechococcus_phage	1.8e-14	26.1
WP_143855829.1\|54285_55341_-	hypothetical protein	NA	NA	NA	NA
WP_143855830.1\|55352_55769_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.5e-21	51.0
55929:55985	attL	NA	NA	NA	NA
WP_143855831.1\|56826_57612_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_143855832.1\|57626_62096_+	hypothetical protein	NA	NA	NA	NA
WP_143855833.1\|62092_64672_+	hypothetical protein	NA	NA	NA	NA
WP_143855834.1\|64975_65350_+	hypothetical protein	NA	NA	NA	NA
WP_143855835.1\|65383_65896_-	hypothetical protein	NA	NA	NA	NA
WP_143855836.1\|65885_66407_-	glycoside hydrolase family protein	NA	NA	NA	NA
WP_143855837.1\|66403_66652_-	hypothetical protein	NA	NA	NA	NA
WP_143855838.1\|66721_67765_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.0e-81	46.5
WP_143855839.1\|67767_67974_-\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	2.0e-06	46.7
WP_143855840.1\|67948_68863_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.2e-30	48.4
WP_143855841.1\|68872_71260_-\|tail	phage tail tape measure protein	F6MIL1	Haemophilus_phage	2.3e-08	23.9
WP_143855842.1\|71353_71671_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_143855843.1\|71774_72425_+	hypothetical protein	NA	NA	NA	NA
WP_143855844.1\|72451_72955_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.5e-47	53.9
WP_143855845.1\|72966_74136_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	7.9e-164	75.5
WP_143855846.1\|74282_74576_+	hypothetical protein	NA	NA	NA	NA
WP_143855847.1\|74660_74966_+	hypothetical protein	NA	NA	NA	NA
WP_143855848.1\|74962_75505_-	hypothetical protein	NA	NA	NA	NA
WP_143855849.1\|75509_76424_-	hypothetical protein	NA	NA	NA	NA
WP_143855850.1\|76423_76744_-	hypothetical protein	NA	NA	NA	NA
WP_143855851.1\|76795_77410_-	hypothetical protein	V5YST5	Pseudomonas_phage	2.1e-35	42.2
WP_143855852.1\|77417_78044_-\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	5.9e-17	33.3
WP_144280534.1\|78033_78918_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	9.1e-64	45.0
WP_143855853.1\|78923_79292_-\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.7e-16	42.5
WP_143855854.1\|79288_79486_-	hypothetical protein	NA	NA	NA	NA
WP_143855855.1\|79566_79839_-	hypothetical protein	NA	NA	NA	NA
WP_143855856.1\|79835_80333_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	1.8e-16	28.6
WP_143855857.1\|80301_80862_-	hypothetical protein	Q9JML9	Wolbachia_phage	1.4e-25	43.3
WP_143855858.1\|80848_81397_-\|tail	phage tail protein	NA	NA	NA	NA
WP_143855859.1\|81396_81693_-	hypothetical protein	NA	NA	NA	NA
WP_143855860.1\|81697_82693_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.0e-115	60.5
WP_143855861.1\|82811_83531_+	hypothetical protein	NA	NA	NA	NA
WP_143855862.1\|83557_84193_-	hypothetical protein	NA	NA	NA	NA
WP_143855863.1\|84242_84590_-\|head	head decoration protein	NA	NA	NA	NA
WP_143855864.1\|84586_85708_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	6.1e-81	50.0
WP_143855865.1\|85704_87177_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.0e-172	64.0
WP_143855866.1\|87173_87386_-	hypothetical protein	NA	NA	NA	NA
WP_143855867.1\|87396_89307_-\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	3.9e-128	45.6
WP_143855868.1\|89221_89716_-	hypothetical protein	NA	NA	NA	NA
WP_143855869.1\|90340_91252_+	hypothetical protein	NA	NA	NA	NA
WP_143855870.1\|91335_91824_-	site-specific DNA-methyltransferase	K7RG04	Vibrio_phage	5.8e-28	62.3
WP_143855871.1\|91848_92472_-	site-specific DNA-methyltransferase	K7RG04	Vibrio_phage	5.7e-44	46.8
WP_143855872.1\|92452_92629_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_143855873.1\|92886_94434_-	hypothetical protein	Q38324	Lactococcus_phage	8.3e-20	25.1
WP_143855874.1\|94693_95302_-	hypothetical protein	Q6JIF4	Burkholderia_virus	2.0e-17	33.5
WP_143855875.1\|95301_95517_-	hypothetical protein	K4I3Y0	Acidithiobacillus_phage	8.2e-11	49.3
WP_143855876.1\|95513_95954_-	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	1.2e-32	52.1
WP_143855877.1\|96189_96498_-	DUF1364 family protein	A0A2I7RNU4	Vibrio_phage	2.2e-25	56.1
WP_144280535.1\|96494_96872_-	hypothetical protein	A0A059VG13	Pseudomonas_phage	1.2e-25	57.9
WP_143855878.1\|96922_98317_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	9.3e-79	40.9
WP_143855879.1\|98313_99144_-	replication protein	NA	NA	NA	NA
WP_143855880.1\|99140_99356_-	hypothetical protein	NA	NA	NA	NA
WP_143855881.1\|99717_100446_+	helix-turn-helix domain-containing protein	A0A2D1GM27	Escherichia_phage	6.2e-18	32.1
WP_143855882.1\|101496_102498_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_143855883.1\|102771_103011_+	hypothetical protein	NA	NA	NA	NA
WP_143855884.1\|103321_103819_+	siphovirus Gp157 family protein	A0A2I7RAE0	Vibrio_phage	4.1e-21	39.0
WP_143855885.1\|103829_104495_+	AAA family ATPase	A0A2D1GLT5	Escherichia_phage	4.8e-65	53.9
WP_143855886.1\|104515_105172_+	hypothetical protein	NA	NA	NA	NA
WP_143855887.1\|105343_105580_+	hypothetical protein	NA	NA	NA	NA
WP_143855888.1\|105691_106174_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143855889.1\|106023_107025_+\|integrase	tyrosine-type recombinase/integrase	A0A077KGX2	Edwardsiella_phage	2.6e-83	45.2
107111:107167	attR	NA	NA	NA	NA

DBSCAN-SWA_2

448574 : 517360

uncultured_Caudovirales_phage(41.67%)

head,plate,terminase,capsid,protease,portal,integrase,tail

attL 447392:447407|attR 490766:490781

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
447392:447407	attL	NA	NA	NA	NA
WP_143856156.1\|448574_449921_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_143856157.1\|449968_451156_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_143856158.1\|451158_451977_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_143856159.1\|451970_452732_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.0e-18	37.6
WP_143856160.1\|452742_453300_-	ribosome recycling factor	NA	NA	NA	NA
WP_143856161.1\|453466_454186_-	UMP kinase	NA	NA	NA	NA
WP_143856162.1\|454318_455191_-	elongation factor Ts	NA	NA	NA	NA
WP_143856163.1\|455274_455997_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_143856164.1\|456183_456984_-	hypothetical protein	NA	NA	NA	NA
WP_143856165.1\|456980_457937_-	MCE family protein	NA	NA	NA	NA
WP_143856166.1\|457933_458485_-	hypothetical protein	NA	NA	NA	NA
WP_143856167.1\|458481_459192_-	ABC transporter permease	NA	NA	NA	NA
WP_143856168.1\|459424_460378_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-54	40.3
WP_143856169.1\|460436_460640_-	hypothetical protein	NA	NA	NA	NA
WP_143856170.1\|460634_461792_+	hypothetical protein	NA	NA	NA	NA
WP_143856171.1\|462213_463560_+	hypothetical protein	NA	NA	NA	NA
WP_143856172.1\|463542_464100_-	hypothetical protein	NA	NA	NA	NA
WP_144280551.1\|464317_464899_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
WP_143856173.1\|464982_465894_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_143856174.1\|465953_466433_+	hypothetical protein	NA	NA	NA	NA
WP_143856175.1\|466468_466852_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_143856176.1\|467028_467718_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_143856177.1\|467714_468470_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_143856178.1\|468594_470403_+	thiamine pyrophosphate-binding protein	C7U069	Ostreococcus_tauri_virus	1.2e-09	21.2
WP_143856179.1\|470399_471218_+	citryl-CoA lyase	NA	NA	NA	NA
WP_143856180.1\|471214_472021_+	citryl-CoA lyase	NA	NA	NA	NA
WP_143856181.1\|472065_474183_+	TonB-dependent receptor	NA	NA	NA	NA
WP_143856182.1\|474218_475445_+	hypothetical protein	NA	NA	NA	NA
WP_144280552.1\|475461_479922_+	EAL domain-containing protein	A0A1V0SGX0	Hokovirus	4.1e-51	27.4
WP_143856183.1\|479940_480636_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_143856184.1\|480732_482196_+	anthranilate synthase component I	S4VT78	Pandoravirus	1.4e-37	31.1
WP_143856185.1\|483512_483848_+	hypothetical protein	NA	NA	NA	NA
WP_143856186.1\|483822_484149_+	hypothetical protein	NA	NA	NA	NA
WP_143856187.1\|484613_485831_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.8e-78	39.5
WP_143856188.1\|486487_488827_+	RHS repeat protein	NA	NA	NA	NA
WP_143856189.1\|488702_491213_+	hypothetical protein	NA	NA	NA	NA
490766:490781	attR	NA	NA	NA	NA
WP_143856190.1\|491215_491926_+	hypothetical protein	NA	NA	NA	NA
WP_143856191.1\|492022_492334_+	excisionase	NA	NA	NA	NA
WP_143856192.1\|492330_492831_-	glycoside hydrolase family protein	A0A023ZU91	Escherichia_phage	8.1e-17	34.5
WP_143856193.1\|492827_493076_-	hypothetical protein	NA	NA	NA	NA
WP_143856194.1\|493143_494187_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.3e-81	46.2
WP_143856195.1\|494189_494396_-\|tail	phage tail protein	M1RZ22	Escherichia_phage	9.0e-07	46.7
WP_144280553.1\|494370_495174_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	8.4e-32	45.6
WP_143856196.1\|495294_497685_-\|tail	phage tail tape measure protein	F6MIL1	Haemophilus_phage	5.1e-08	23.8
WP_143856197.1\|497778_498102_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_143856198.1\|498316_498892_+	hypothetical protein	NA	NA	NA	NA
WP_143856199.1\|498932_499436_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	2.0e-47	52.7
WP_143856200.1\|499447_500617_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.4e-160	74.5
WP_143856201.1\|500823_501141_+	hypothetical protein	NA	NA	NA	NA
WP_143856202.1\|501257_501530_-	hypothetical protein	NA	NA	NA	NA
WP_143856203.1\|501574_502186_+	hypothetical protein	NA	NA	NA	NA
WP_143856204.1\|502182_502725_-	hypothetical protein	NA	NA	NA	NA
WP_143856205.1\|502729_503644_-	hypothetical protein	NA	NA	NA	NA
WP_143856206.1\|503643_503961_-	hypothetical protein	NA	NA	NA	NA
WP_143856207.1\|504024_504639_-	hypothetical protein	V5YST5	Pseudomonas_phage	1.6e-35	42.2
WP_143856208.1\|504646_505273_-\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	5.9e-17	32.0
WP_143856209.1\|505262_506156_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	6.0e-63	45.0
WP_143856210.1\|506152_506518_-\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-15	41.6
WP_143856211.1\|506517_506712_-	hypothetical protein	NA	NA	NA	NA
WP_143856212.1\|506783_507056_-	hypothetical protein	NA	NA	NA	NA
WP_143856213.1\|507052_507682_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	7.5e-20	34.4
WP_143856214.1\|507518_508079_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	8.7e-28	43.3
WP_143856215.1\|508065_508614_-\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	2.0e-13	28.4
WP_143856216.1\|508610_508910_-	hypothetical protein	NA	NA	NA	NA
WP_143856217.1\|508914_509910_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.2e-117	61.7
WP_143856218.1\|510067_512221_+	hypothetical protein	NA	NA	NA	NA
WP_143856219.1\|512273_512621_-\|head	head decoration protein	NA	NA	NA	NA
WP_144280554.1\|512620_513730_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	7.2e-82	49.1
WP_143856220.1\|513738_515211_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	7.9e-161	61.4
WP_143856221.1\|515207_515420_-	hypothetical protein	NA	NA	NA	NA
WP_143856222.1\|515446_517360_-\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	8.7e-128	45.4

DBSCAN-SWA_3

526242 : 535417

Escherichia_phage(27.27%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143856229.1\|526242_526836_-	hypothetical protein	Q6JIF4	Burkholderia_virus	6.0e-19	36.2
WP_143856230.1\|526835_527054_-	hypothetical protein	K4I3Y0	Acidithiobacillus_phage	9.2e-10	47.8
WP_143856231.1\|527050_527491_-	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	6.2e-37	58.4
WP_143856232.1\|527725_528034_-	DUF1364 family protein	A0A2I7RNU4	Vibrio_phage	7.6e-26	55.1
WP_144280556.1\|528030_528408_-	hypothetical protein	A0A059VG13	Pseudomonas_phage	9.4e-26	57.9
WP_143856233.1\|528458_529391_-	AAA family ATPase	A0A2H4J8N1	uncultured_Caudovirales_phage	3.8e-20	31.9
WP_143856234.1\|529387_530782_-	replicative DNA helicase	O80281	Escherichia_phage	2.3e-77	42.0
WP_143856235.1\|530778_531609_-	replication protein	NA	NA	NA	NA
WP_143856236.1\|531605_531872_-	hypothetical protein	NA	NA	NA	NA
WP_143856237.1\|531895_532177_-	helix-turn-helix domain-containing protein	A0A1B5FPK9	Escherichia_phage	1.7e-11	37.5
WP_143856238.1\|532259_532988_+	helix-turn-helix domain-containing protein	A0A0R6PKV4	Moraxella_phage	7.6e-16	29.3
WP_143856239.1\|533841_534081_+	hypothetical protein	NA	NA	NA	NA
WP_143856240.1\|534077_534227_+	DUF1129 domain-containing protein	NA	NA	NA	NA
WP_143856241.1\|534245_534743_+	siphovirus Gp157 family protein	A0A2I7RAE0	Vibrio_phage	1.9e-18	35.6
WP_143856242.1\|534751_535417_+	AAA family ATPase	A0A2D1GLT5	Escherichia_phage	4.8e-65	53.9

DBSCAN-SWA_4

964892 : 974317

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143856554.1\|964892_965609_-	helix-turn-helix domain-containing protein	R9TNM0	Vibrio_phage	9.5e-19	29.9
WP_143856555.1\|965690_965885_+	hypothetical protein	NA	NA	NA	NA
WP_143856556.1\|966118_966334_+	hypothetical protein	NA	NA	NA	NA
WP_143856557.1\|966330_967161_+	hypothetical protein	NA	NA	NA	NA
WP_143856558.1\|967157_968552_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	6.7e-69	39.4
WP_144280573.1\|968602_968980_+	hypothetical protein	A0A059VG13	Pseudomonas_phage	7.2e-26	60.0
WP_143856559.1\|968976_969285_+	DUF1364 family protein	A0A2I7RNU4	Vibrio_phage	6.5e-25	54.1
WP_143856560.1\|969520_969961_+	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	3.6e-37	57.1
WP_143856561.1\|969957_970176_+	hypothetical protein	K4I3Y0	Acidithiobacillus_phage	6.4e-11	47.2
WP_143856562.1\|970175_970802_+	hypothetical protein	Q6JIF4	Burkholderia_virus	1.8e-18	35.2
WP_143856563.1\|971045_971885_+	TIGR04255 family protein	NA	NA	NA	NA
WP_143856564.1\|971859_972372_+	hypothetical protein	NA	NA	NA	NA
WP_143856565.1\|972381_973068_+	hypothetical protein	NA	NA	NA	NA
WP_143856566.1\|973534_974317_-	hypothetical protein	S5W9H2	Leptospira_phage	5.0e-05	32.7

DBSCAN-SWA_5

1400460 : 1407639

Salmonella_phage(16.67%)

integrase

attL 1388191:1388206|attR 1425604:1425619

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1388191:1388206	attL	NA	NA	NA	NA
WP_143856898.1\|1400460_1401351_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	1.0e-75	53.9
WP_143856899.1\|1401616_1402654_-\|integrase	tyrosine-type recombinase/integrase	A0A088CD23	Shigella_phage	4.8e-88	46.1
WP_143856900.1\|1402503_1402857_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143856901.1\|1403530_1404262_-	helix-turn-helix domain-containing protein	A0A0P0J076	Acinetobacter_phage	2.5e-14	54.3
WP_143856902.1\|1404369_1404564_+	hypothetical protein	NA	NA	NA	NA
WP_143856903.1\|1404881_1405739_+	replication protein	I6PDJ3	Cronobacter_phage	2.7e-12	46.1
WP_143856904.1\|1405735_1407157_+	AAA family ATPase	I6S783	Marinomonas_phage	5.4e-66	35.9
WP_143856905.1\|1407072_1407639_+	hypothetical protein	M4QNU5	Tetraselmis_viridis_virus	3.6e-05	28.4
1425604:1425619	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3425041 : 3516923

Burkholderia_phage(22.5%)

head,plate,holin,terminase,capsid,protease,tRNA,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144279032.1\|3425041_3426952_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	7.4e-111	42.0
WP_144279033.1\|3427234_3428065_+	dihydropteroate synthase	S4VNV0	Pandoravirus	4.5e-20	33.7
WP_144279034.1\|3428107_3429463_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_144279035.1\|3429528_3430779_-	hypothetical protein	NA	NA	NA	NA
WP_144279036.1\|3431073_3431898_-	phosphate ABC transporter ATP-binding protein PstB	W8CYL7	Bacillus_phage	1.6e-14	35.0
WP_144279037.1\|3432058_3432904_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_144279038.1\|3432918_3433923_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_144279039.1\|3434005_3435049_-	phosphate ABC transporter substrate-binding protein PstS	A0A1D7SRJ6	Cyanophage	5.6e-52	39.6
WP_144279040.1\|3435509_3435863_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_144279041.1\|3436090_3436459_+	NAD(P)H-quinone oxidoreductase subunit 3	NA	NA	NA	NA
WP_144279042.1\|3436449_3436944_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_144279043.1\|3436958_3437552_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_144279044.1\|3437544_3438798_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_144279045.1\|3438797_3439271_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_144279046.1\|3439286_3440576_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_144279047.1\|3440667_3442998_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_144279048.1\|3443008_3444067_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_144279049.1\|3444077_3444566_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_144279050.1\|3444596_3445247_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_144279051.1\|3445262_3445565_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_144279052.1\|3445644_3447699_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_144279053.1\|3447750_3449247_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_144279054.1\|3449281_3450736_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_144279055.1\|3450732_3451035_+	DUF2818 family protein	NA	NA	NA	NA
WP_144279056.1\|3451353_3453252_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.2e-130	39.6
WP_144280705.1\|3453336_3453858_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.8e-09	35.2
WP_028445459.1\|3454007_3454208_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_144279057.1\|3454230_3454590_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_144279058.1\|3454730_3455729_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.2e-33	36.3
WP_144279059.1\|3455826_3458190_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_144280706.1\|3458227_3458542_+	integration host factor subunit alpha	A0A1P8CWT5	Bacillus_phage	4.4e-13	42.2
WP_144280707.1\|3458516_3458924_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_144279060.1\|3459145_3459991_-	DUF817 family protein	NA	NA	NA	NA
WP_144279061.1\|3460586_3461096_-	hypothetical protein	NA	NA	NA	NA
WP_144279062.1\|3461656_3461815_+	DUF3309 family protein	NA	NA	NA	NA
WP_144279063.1\|3462130_3462643_+	hypothetical protein	NA	NA	NA	NA
WP_144279064.1\|3462643_3464914_-	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_144279065.1\|3464910_3466536_-	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_144279066.1\|3466640_3467567_-	flavohemoprotein	NA	NA	NA	NA
WP_144279067.1\|3467656_3469330_+	recombinase family protein	Q3HQV4	Burkholderia_phage	3.2e-126	45.1
WP_144279068.1\|3469272_3469554_-	hypothetical protein	A8YQQ5	Burkholderia_virus	2.4e-10	40.0
WP_144280708.1\|3469679_3469907_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_144279069.1\|3469938_3470250_-	hypothetical protein	NA	NA	NA	NA
WP_144279070.1\|3470338_3472411_-	replication endonuclease	Q1I108	Pasteurella_virus	7.4e-32	29.2
WP_143855781.1\|3472407_3472725_-	hypothetical protein	NA	NA	NA	NA
WP_143855780.1\|3472727_3473099_-	hypothetical protein	NA	NA	NA	NA
WP_143855779.1\|3473155_3473488_-	hypothetical protein	NA	NA	NA	NA
WP_143855778.1\|3473614_3473986_-	hypothetical protein	NA	NA	NA	NA
WP_144279071.1\|3474468_3475044_+	hypothetical protein	NA	NA	NA	NA
WP_144279072.1\|3475358_3475907_+	hypothetical protein	NA	NA	NA	NA
WP_144279073.1\|3476079_3477117_-	phage late control D family protein	A0A077KES1	Ralstonia_phage	5.1e-90	51.0
WP_144279074.1\|3477103_3477520_-\|tail	phage tail protein	A0A1S5NTH4	Burkholderia_phage	1.8e-38	59.0
WP_144279075.1\|3477532_3480202_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	1.3e-105	36.4
WP_144279076.1\|3480400_3481249_+	hypothetical protein	NA	NA	NA	NA
WP_144279077.1\|3481376_3482501_-	site-specific DNA-methyltransferase	K7RG04	Vibrio_phage	4.3e-74	51.0
WP_144279078.1\|3482541_3482661_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	1.9e-09	69.2
WP_144279079.1\|3482811_3482928_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_144280709.1\|3482936_3483251_-\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	3.1e-22	58.5
WP_144279080.1\|3483313_3483823_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.5e-58	64.9
WP_144279081.1\|3483849_3485022_-\|tail	phage tail sheath protein	A4PE49	Ralstonia_virus	8.7e-163	73.1
WP_144279082.1\|3486228_3487236_+	hypothetical protein	NA	NA	NA	NA
WP_144279083.1\|3487328_3488174_+	hypothetical protein	NA	NA	NA	NA
WP_144279084.1\|3488321_3488909_+	hypothetical protein	NA	NA	NA	NA
WP_144279085.1\|3488993_3489935_+	hypothetical protein	NA	NA	NA	NA
WP_144279086.1\|3490095_3492537_-	S8 family serine peptidase	A0A2K9L570	Tupanvirus	1.4e-13	30.8
WP_144279087.1\|3492647_3493073_-	hypothetical protein	NA	NA	NA	NA
WP_144279088.1\|3493461_3494004_-	hypothetical protein	NA	NA	NA	NA
WP_144279089.1\|3494006_3494921_-	hypothetical protein	NA	NA	NA	NA
WP_144279090.1\|3494924_3495245_-	hypothetical protein	NA	NA	NA	NA
WP_144279091.1\|3495299_3495914_-	hypothetical protein	V5YST5	Pseudomonas_phage	5.6e-44	49.2
WP_144279092.1\|3495922_3497632_-	hypothetical protein	A0A1B0XUH9	Freshwater_phage	2.4e-20	36.1
WP_144279093.1\|3497635_3498331_-\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	3.0e-25	34.7
WP_144279094.1\|3498287_3499172_-	hypothetical protein	E5G6N8	Salmonella_phage	3.6e-60	44.7
WP_144280710.1\|3499168_3499525_-	hypothetical protein	E5E3R0	Burkholderia_phage	1.0e-26	52.1
WP_144279095.1\|3499532_3500258_-\|plate	phage baseplate assembly protein V	E5E3R1	Burkholderia_phage	3.1e-41	43.5
WP_144279096.1\|3500349_3500886_+	hypothetical protein	NA	NA	NA	NA
WP_144279097.1\|3500852_3501302_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-26	44.5
WP_144279098.1\|3501298_3501775_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	6.5e-32	51.4
WP_144279099.1\|3501749_3502028_-	hypothetical protein	S4TNY4	Salmonella_phage	3.3e-12	44.6
WP_144279100.1\|3502301_3503111_-	DUF3380 domain-containing protein	A0A077K808	Ralstonia_phage	5.4e-79	58.7
WP_144279101.1\|3503107_3503422_-\|holin	phage holin family protein	A4PE35	Ralstonia_virus	7.8e-10	42.5
WP_144279102.1\|3503418_3503808_-	hypothetical protein	E5E3R9	Burkholderia_phage	8.8e-19	42.4
WP_144279103.1\|3503810_3504017_-\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	3.7e-16	59.1
WP_144279104.1\|3504016_3504490_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	2.2e-32	52.2
WP_144279105.1\|3504594_3505293_-\|terminase	terminase	A4PE31	Ralstonia_virus	2.8e-52	51.3
WP_144279106.1\|3505289_3506318_-\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	1.3e-125	66.5
WP_144279107.1\|3506354_3507161_-\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	1.2e-49	42.6
WP_144279108.1\|3507293_3509078_+\|terminase	terminase ATPase subunit family protein	A0A077K8Q7	Ralstonia_phage	1.2e-232	66.0
WP_144279109.1\|3509077_3510118_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.0e-130	65.4
WP_144279110.1\|3510910_3511363_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_144279111.1\|3511532_3512255_-	hypothetical protein	NA	NA	NA	NA
WP_144279112.1\|3512451_3513111_-	DUF1993 family protein	NA	NA	NA	NA
WP_144279113.1\|3513113_3513608_+	DUF45 domain-containing protein	NA	NA	NA	NA
WP_144279114.1\|3513674_3514937_-	hypothetical protein	NA	NA	NA	NA
WP_144279115.1\|3515043_3515985_-	TerC/Alx family metal homeostasis membrane protein	K4F9T9	Cronobacter_phage	2.6e-40	35.0
WP_144279116.1\|3516044_3516923_-\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_7

4079562 : 4156221

uncultured_Caudovirales_phage(26.47%)

head,plate,terminase,capsid,protease,portal,tRNA,integrase,tail

attL 4099015:4099030|attR 4157456:4157471

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144279576.1\|4079562_4080921_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_144279577.1\|4080915_4081335_-	hypothetical protein	NA	NA	NA	NA
WP_144279578.1\|4082087_4082510_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.7e-20	45.5
WP_144279579.1\|4082527_4083634_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_144279580.1\|4083637_4084384_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_144279581.1\|4084413_4085409_+	DUF4115 domain-containing protein	NA	NA	NA	NA
WP_144279582.1\|4085412_4086690_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_144279583.1\|4086694_4087951_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_144279584.1\|4087955_4088216_+	hypothetical protein	NA	NA	NA	NA
WP_144279585.1\|4088221_4088854_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_144279586.1\|4088853_4089969_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_144279587.1\|4089981_4091436_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_144279588.1\|4091572_4091830_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_144279589.1\|4091941_4093048_+	GTPase HflX	NA	NA	NA	NA
WP_144279590.1\|4093055_4094228_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_144279591.1\|4094229_4095099_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_144279592.1\|4095295_4096450_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_144279593.1\|4096528_4097824_+	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	3.8e-66	34.4
WP_144279594.1\|4097872_4098631_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_144279595.1\|4098769_4099516_+	hypothetical protein	NA	NA	NA	NA
4099015:4099030	attL	NA	NA	NA	NA
WP_144279596.1\|4100637_4101027_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_144279597.1\|4101277_4102282_-\|integrase	tyrosine-type recombinase/integrase	B6SCW8	Bacteriophage	2.6e-70	40.2
WP_144279598.1\|4102152_4102578_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144279599.1\|4102818_4103055_-	hypothetical protein	NA	NA	NA	NA
WP_144279600.1\|4103234_4103891_-	hypothetical protein	NA	NA	NA	NA
WP_144279601.1\|4103911_4104577_-	AAA family ATPase	A0A2D1GLT5	Escherichia_phage	1.8e-64	52.7
WP_144279602.1\|4104586_4105084_-	siphovirus Gp157 family protein	A0A2I7RAE0	Vibrio_phage	1.6e-20	38.4
WP_144279603.1\|4105394_4105634_-	hypothetical protein	NA	NA	NA	NA
WP_144279604.1\|4105914_4106169_+	hypothetical protein	NA	NA	NA	NA
WP_144279605.1\|4106485_4107214_-	helix-turn-helix domain-containing protein	A0A2D1GM27	Escherichia_phage	1.6e-18	32.1
WP_144279606.1\|4107575_4107791_+	hypothetical protein	NA	NA	NA	NA
WP_144279607.1\|4107787_4108618_+	replication protein	NA	NA	NA	NA
WP_144279608.1\|4108614_4110009_+	replicative DNA helicase	O80281	Escherichia_phage	8.7e-77	41.1
WP_144279609.1\|4110005_4110938_+	AAA family ATPase	A0A125RNK2	Pseudomonas_phage	2.2e-20	36.7
WP_144280746.1\|4110988_4111366_+	recombination protein NinB	A0A059VG13	Pseudomonas_phage	9.4e-26	58.9
WP_144279610.1\|4111362_4111671_+	DUF1364 family protein	A0A2I7RNU4	Vibrio_phage	4.5e-26	57.1
WP_144279611.1\|4111667_4111883_+	hypothetical protein	NA	NA	NA	NA
WP_144279612.1\|4111906_4112347_+	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	1.1e-36	56.2
WP_144279613.1\|4112343_4112547_+	hypothetical protein	K4I3Y0	Acidithiobacillus_phage	1.3e-10	57.7
WP_144279614.1\|4112546_4113155_+	hypothetical protein	Q6JIF4	Burkholderia_virus	2.0e-17	34.0
WP_144279615.1\|4113314_4115015_-	hypothetical protein	NA	NA	NA	NA
WP_144279616.1\|4115600_4117037_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.7e-19	36.1
WP_144280747.1\|4117429_4117783_+	hypothetical protein	NA	NA	NA	NA
WP_144279617.1\|4118061_4118526_-	hypothetical protein	NA	NA	NA	NA
WP_144279618.1\|4119020_4119557_+	hypothetical protein	NA	NA	NA	NA
WP_144279619.1\|4119471_4121373_+\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	3.3e-127	45.2
WP_144279620.1\|4121395_4121608_+	hypothetical protein	NA	NA	NA	NA
WP_144279621.1\|4121604_4123077_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.1e-161	62.1
WP_144279622.1\|4123073_4124195_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	2.1e-81	49.3
WP_144279623.1\|4124194_4124542_+\|head	head decoration protein	NA	NA	NA	NA
WP_144279624.1\|4124609_4126844_-	hypothetical protein	NA	NA	NA	NA
WP_144279625.1\|4126915_4127911_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	5.6e-118	61.1
WP_144279626.1\|4127915_4128215_+	hypothetical protein	NA	NA	NA	NA
WP_144279627.1\|4128211_4128760_+\|tail	phage tail protein	NA	NA	NA	NA
WP_144279628.1\|4128746_4129307_+	hypothetical protein	Q9JML9	Wolbachia_phage	7.4e-27	45.5
WP_144279629.1\|4129296_4129773_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	6.3e-19	33.1
WP_144279630.1\|4129769_4130042_+	hypothetical protein	NA	NA	NA	NA
WP_144279631.1\|4130122_4130317_+	hypothetical protein	NA	NA	NA	NA
WP_144279632.1\|4130316_4130682_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.9e-15	41.6
WP_144279633.1\|4130678_4131572_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.1e-62	44.0
WP_144279634.1\|4131561_4132188_+\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	4.5e-17	32.5
WP_144279635.1\|4132195_4132810_+	hypothetical protein	V5YST5	Pseudomonas_phage	1.6e-35	42.2
WP_144279636.1\|4132861_4133182_+	hypothetical protein	NA	NA	NA	NA
WP_144279637.1\|4133181_4134096_+	hypothetical protein	NA	NA	NA	NA
WP_144279638.1\|4134100_4134643_+	hypothetical protein	NA	NA	NA	NA
WP_144279639.1\|4134688_4135006_-	hypothetical protein	NA	NA	NA	NA
WP_144279640.1\|4135219_4136389_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	4.8e-161	74.9
WP_144279641.1\|4136400_4136904_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	5.2e-48	54.5
WP_144279642.1\|4136912_4137572_-	hypothetical protein	NA	NA	NA	NA
WP_144279643.1\|4137675_4138002_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_144279644.1\|4138095_4140486_+\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	5.1e-08	22.4
WP_144280748.1\|4140606_4141410_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.1e-28	38.4
WP_144279645.1\|4141384_4141591_+\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	1.2e-06	46.7
WP_144279646.1\|4141593_4142637_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.3e-81	46.2
WP_144279647.1\|4142706_4142955_+	hypothetical protein	NA	NA	NA	NA
WP_144279648.1\|4142951_4143473_+	glycoside hydrolase family protein	A0A173GD86	Pseudomonas_phage	8.4e-17	40.3
WP_144279649.1\|4143462_4143960_+	hypothetical protein	NA	NA	NA	NA
WP_144279650.1\|4144051_4146061_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-24	33.6
WP_144279651.1\|4146283_4153243_-	hypothetical protein	NA	NA	NA	NA
WP_144279652.1\|4153249_4153984_-	hypothetical protein	NA	NA	NA	NA
WP_144279653.1\|4154215_4154878_+	SOS response-associated peptidase	A0A2D1GMM4	Marinobacter_phage	1.2e-63	52.9
WP_144279654.1\|4155177_4156221_-\|integrase	tyrosine-type recombinase/integrase	S5FNS2	Shigella_phage	2.1e-83	42.5
4157456:4157471	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4160276 : 4166165

Vibrio_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143856554.1\|4160276_4160993_-	helix-turn-helix domain-containing protein	R9TNM0	Vibrio_phage	9.5e-19	29.9
WP_143856555.1\|4161074_4161269_+	hypothetical protein	NA	NA	NA	NA
WP_143856556.1\|4161502_4161718_+	hypothetical protein	NA	NA	NA	NA
WP_144279660.1\|4161714_4162545_+	replication protein	NA	NA	NA	NA
WP_144279661.1\|4162541_4163936_+	replicative DNA helicase	O80281	Escherichia_phage	5.6e-76	40.9
WP_144280749.1\|4163986_4164364_+	recombination protein NinB	A0A059VG13	Pseudomonas_phage	2.1e-25	56.8
WP_144279662.1\|4164360_4164669_+	DUF1364 family protein	A0A2I7RNU4	Vibrio_phage	8.4e-25	55.1
WP_144279663.1\|4164665_4164881_+	hypothetical protein	NA	NA	NA	NA
WP_144279664.1\|4164904_4165345_+	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	2.8e-37	56.6
WP_144279665.1\|4165341_4165557_+	hypothetical protein	K4I3Y0	Acidithiobacillus_phage	1.1e-10	52.5
WP_144279666.1\|4165556_4166165_+	hypothetical protein	Q6JIF4	Burkholderia_virus	3.1e-18	35.0

DBSCAN-SWA_9

4173713 : 4207314

uncultured_Caudovirales_phage(55.0%)

head,plate,terminase,capsid,protease,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144279675.1\|4173713_4175624_+\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	7.9e-129	44.2
WP_144279676.1\|4175651_4175864_+	hypothetical protein	NA	NA	NA	NA
WP_144279677.1\|4175860_4177336_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.2e-163	61.4
WP_144279678.1\|4177332_4178454_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	1.2e-81	49.6
WP_144279679.1\|4178453_4178801_+\|head	head decoration protein	NA	NA	NA	NA
WP_144279680.1\|4178901_4179735_+	hypothetical protein	NA	NA	NA	NA
WP_144279681.1\|4179813_4180809_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	5.6e-118	61.1
WP_144279682.1\|4180813_4181110_+	hypothetical protein	NA	NA	NA	NA
WP_144279683.1\|4181177_4181429_+	hypothetical protein	NA	NA	NA	NA
WP_144280752.1\|4181415_4181961_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	2.9e-12	28.6
WP_144279684.1\|4181947_4182508_+	hypothetical protein	Q9JML9	Wolbachia_phage	2.1e-26	44.0
WP_144279685.1\|4182383_4182974_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.0e-18	32.5
WP_144279686.1\|4182970_4183240_+	hypothetical protein	NA	NA	NA	NA
WP_144279687.1\|4183533_4184211_+	hypothetical protein	NA	NA	NA	NA
WP_144279688.1\|4184516_4184714_+	hypothetical protein	NA	NA	NA	NA
WP_144279689.1\|4184713_4185079_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.4e-15	41.6
WP_144279690.1\|4185075_4185969_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	2.1e-63	45.0
WP_144279691.1\|4185958_4186585_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	1.2e-17	42.1
WP_144279692.1\|4186592_4187207_+	hypothetical protein	V5YST5	Pseudomonas_phage	1.6e-35	42.2
WP_144279693.1\|4187257_4187578_+	hypothetical protein	NA	NA	NA	NA
WP_144279694.1\|4187577_4188492_+	hypothetical protein	NA	NA	NA	NA
WP_144279695.1\|4188496_4189039_+	hypothetical protein	NA	NA	NA	NA
WP_144279696.1\|4189035_4189341_-	hypothetical protein	NA	NA	NA	NA
WP_144279697.1\|4189602_4190772_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	9.6e-162	75.0
WP_144279698.1\|4190783_4191287_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	5.2e-48	53.9
WP_144279699.1\|4191304_4191964_-	hypothetical protein	NA	NA	NA	NA
WP_144279700.1\|4192067_4192394_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_144279701.1\|4192487_4194878_+\|tail	phage tail tape measure protein	F6MIL1	Haemophilus_phage	8.6e-08	23.6
WP_144280753.1\|4194998_4195802_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	9.9e-33	39.2
WP_144279702.1\|4195776_4195983_+\|tail	phage tail protein	M1RZ22	Escherichia_phage	9.0e-07	46.7
WP_144279703.1\|4195985_4197029_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	4.1e-79	45.3
WP_144279704.1\|4197098_4197347_+	hypothetical protein	NA	NA	NA	NA
WP_144279705.1\|4197343_4197865_+	glycoside hydrolase family protein	NA	NA	NA	NA
WP_144279706.1\|4197905_4198136_-	hypothetical protein	NA	NA	NA	NA
WP_144279707.1\|4198116_4198311_+	hypothetical protein	NA	NA	NA	NA
WP_144279708.1\|4198443_4200453_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-24	32.2
WP_144279709.1\|4200675_4201869_-	hypothetical protein	NA	NA	NA	NA
WP_144279710.1\|4203227_4203431_+	hypothetical protein	NA	NA	NA	NA
WP_144279711.1\|4203624_4204470_-	hypothetical protein	NA	NA	NA	NA
WP_144279712.1\|4204469_4204982_-	hypothetical protein	NA	NA	NA	NA
WP_144279713.1\|4205348_4205615_-	hypothetical protein	NA	NA	NA	NA
WP_144279714.1\|4205759_4206224_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	2.0e-30	49.0
WP_144279715.1\|4206270_4206627_+	hypothetical protein	NA	NA	NA	NA
WP_144279716.1\|4206655_4206919_+	hypothetical protein	NA	NA	NA	NA
WP_144279717.1\|4207005_4207314_+\|plate	phage baseplate assembly protein V	E5E3R1	Burkholderia_phage	9.0e-27	54.5

DBSCAN-SWA_10

5033244 : 5088347

Bacillus_phage(50.0%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144280546.1\|5033244_5034324_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_144280340.1\|5034379_5035759_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	1.1e-26	28.7
WP_144280341.1\|5036536_5040391_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.8e-10	28.5
WP_144280342.1\|5040387_5041746_-	type II toxin-antitoxin system HipA family toxin YjjJ	NA	NA	NA	NA
WP_144280343.1\|5042128_5042980_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_144280344.1\|5043109_5044219_+	Vps62-related protein	NA	NA	NA	NA
WP_144280345.1\|5044291_5045755_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.3e-27	30.4
WP_144280795.1\|5045754_5046432_+	response regulator	W8CYM9	Bacillus_phage	4.3e-29	33.2
WP_144280346.1\|5046462_5047467_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_144280347.1\|5047611_5048490_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_144280348.1\|5048561_5051351_+	HAD-IC family P-type ATPase	M1HM40	Paramecium_bursaria_Chlorella_virus	8.1e-74	28.2
WP_144280349.1\|5051493_5051886_+	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_144280796.1\|5051928_5052153_-	hypothetical protein	NA	NA	NA	NA
WP_144280350.1\|5053505_5054522_-	hypothetical protein	NA	NA	NA	NA
WP_144280351.1\|5054667_5055126_-	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_144280797.1\|5057077_5057560_-	DUF3060 domain-containing protein	NA	NA	NA	NA
WP_144280352.1\|5058600_5059002_-	PIN domain-containing protein	NA	NA	NA	NA
WP_144280353.1\|5059001_5059238_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_144280354.1\|5059451_5060309_-	hypothetical protein	NA	NA	NA	NA
WP_144280355.1\|5060802_5062275_+	alpha,alpha-trehalase	NA	NA	NA	NA
WP_144280356.1\|5062304_5062532_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_144280357.1\|5062513_5062945_+	PIN domain-containing protein	NA	NA	NA	NA
WP_144280798.1\|5063355_5064561_+	sterol desaturase family protein	NA	NA	NA	NA
WP_144280358.1\|5064610_5065207_+	hypothetical protein	NA	NA	NA	NA
WP_144280359.1\|5065390_5066044_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_144280360.1\|5066124_5066610_+	DUF3291 domain-containing protein	NA	NA	NA	NA
WP_144280361.1\|5066632_5067160_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_144280362.1\|5067198_5068584_+	FAD-binding protein	NA	NA	NA	NA
WP_144280363.1\|5068700_5069339_+	DUF2239 family protein	NA	NA	NA	NA
WP_144280364.1\|5069335_5070313_+	phosphotransferase	NA	NA	NA	NA
WP_144280365.1\|5070738_5071125_-	VOC family protein	NA	NA	NA	NA
WP_144280366.1\|5071350_5073216_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_144280367.1\|5073300_5074215_+	sterol desaturase family protein	NA	NA	NA	NA
WP_144280368.1\|5074167_5074887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144280369.1\|5074959_5075358_+	DUF488 family protein	NA	NA	NA	NA
WP_144280370.1\|5075354_5076053_+	amino acid racemase	NA	NA	NA	NA
WP_144280371.1\|5076117_5076888_+	DUF1275 family protein	NA	NA	NA	NA
WP_144280372.1\|5076921_5077197_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_144280373.1\|5077196_5077472_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_144280374.1\|5077621_5078977_-	hypothetical protein	NA	NA	NA	NA
WP_144280375.1\|5079035_5081273_-	hypothetical protein	NA	NA	NA	NA
WP_144280376.1\|5081275_5084497_-\|plate	putative baseplate assembly protein	J9PV89	Bacillus_phage	9.5e-18	28.4
WP_144280377.1\|5084483_5087030_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_144280378.1\|5087042_5087399_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_144280379.1\|5087427_5087751_-	hypothetical protein	NA	NA	NA	NA
WP_144280380.1\|5087807_5088347_-\|plate	baseplate assembly protein	NA	NA	NA	NA

DBSCAN-SWA_11

5190017 : 5285790

Burkholderia_phage(23.08%)

head,plate,holin,transposase,terminase,capsid,protease,portal,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144280454.1\|5190017_5190335_-\|protease	protease inhibitor I42 family protein	NA	NA	NA	NA
WP_144280455.1\|5190814_5191774_-	peptidase	A0A2P1ELG2	Moumouvirus	8.8e-12	34.0
WP_144280456.1\|5192582_5192921_+	hypothetical protein	NA	NA	NA	NA
WP_144280457.1\|5193520_5194129_-	hypothetical protein	NA	NA	NA	NA
WP_144280458.1\|5194580_5195669_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.3e-15	34.9
WP_144280459.1\|5195668_5197537_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.7e-15	27.4
WP_144280460.1\|5197684_5198728_+	diguanylate cyclase	NA	NA	NA	NA
WP_144280461.1\|5198866_5199706_-	hypothetical protein	NA	NA	NA	NA
WP_144280462.1\|5200012_5200648_-	hypothetical protein	NA	NA	NA	NA
WP_144280090.1\|5200736_5201908_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.9e-63	43.8
WP_144280463.1\|5201969_5203541_-	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_144280090.1\|5203597_5204769_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.9e-63	43.8
WP_144280464.1\|5204790_5208492_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	1.1e-70	24.9
WP_144280465.1\|5208460_5211940_-	hypothetical protein	NA	NA	NA	NA
WP_144280466.1\|5212009_5212219_-	phosphoribulokinase	NA	NA	NA	NA
WP_144280467.1\|5213489_5213843_-	copper-binding protein	NA	NA	NA	NA
WP_144280801.1\|5213839_5214250_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_144280468.1\|5214359_5215730_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_144280469.1\|5215746_5217174_-	TolC family protein	NA	NA	NA	NA
WP_144280470.1\|5217318_5217990_+	heavy metal response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	9.5e-05	24.8
WP_144280471.1\|5217986_5219372_+	heavy metal sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.6e-12	27.9
WP_144280472.1\|5219382_5220588_-	chromate efflux transporter	NA	NA	NA	NA
WP_144280473.1\|5220607_5222023_-	pyruvate kinase	NA	NA	NA	NA
WP_144280474.1\|5222103_5223042_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_144280475.1\|5223086_5223566_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	3.8e-08	43.2
WP_144280476.1\|5223578_5224610_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_144280477.1\|5224681_5226340_-	DNA repair protein RecN	NA	NA	NA	NA
WP_144280478.1\|5226400_5227279_-	NAD kinase	NA	NA	NA	NA
WP_144280479.1\|5227334_5227607_-	mitomycin resistance protein	NA	NA	NA	NA
WP_144280802.1\|5227618_5228368_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_144280480.1\|5228728_5229745_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_144280803.1\|5229916_5230864_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_144280546.1\|5230941_5232021_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_144280481.1\|5232083_5232437_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A1S5SEX8	Streptococcus_phage	7.0e-07	32.3
WP_144280482.1\|5232436_5232679_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_144280483.1\|5232967_5234302_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_144280484.1\|5234345_5236124_-	DUF1800 family protein	NA	NA	NA	NA
WP_144280485.1\|5236196_5237546_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_144280486.1\|5237672_5238257_+	DUF615 domain-containing protein	NA	NA	NA	NA
WP_144280487.1\|5238249_5238819_+	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_144280488.1\|5240269_5242078_+	DUF885 family protein	NA	NA	NA	NA
WP_144280489.1\|5242109_5242439_-	hypothetical protein	NA	NA	NA	NA
WP_144280490.1\|5242504_5242873_-	PEGA domain-containing protein	NA	NA	NA	NA
WP_144280491.1\|5242950_5244669_+	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_144280492.1\|5244691_5246173_+	amidase	NA	NA	NA	NA
WP_144280493.1\|5246186_5247332_-	glycerate kinase	W6LM47	Streptococcus_phage	6.4e-17	34.0
WP_144280494.1\|5247592_5247997_-	hypothetical protein	NA	NA	NA	NA
WP_144280495.1\|5248085_5248850_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_144280496.1\|5248854_5249919_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_144280497.1\|5249915_5251745_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_144280498.1\|5251791_5253453_+	recombinase family protein	Q3HQV4	Burkholderia_phage	7.8e-157	53.9
WP_144280499.1\|5253774_5254701_+	hypothetical protein	NA	NA	NA	NA
WP_144280500.1\|5254704_5255445_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_144280501.1\|5255504_5256476_+	hypothetical protein	NA	NA	NA	NA
WP_144280804.1\|5256622_5257669_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.6e-129	63.5
WP_144280502.1\|5257677_5259462_-\|terminase	terminase ATPase subunit family protein	A0A077K8Q7	Ralstonia_phage	1.4e-233	66.2
WP_144280503.1\|5259429_5260401_+\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	5.7e-51	43.3
WP_144280504.1\|5260436_5261465_+\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	1.7e-125	66.2
WP_144279105.1\|5261461_5262160_+\|terminase	terminase	A4PE31	Ralstonia_virus	2.8e-52	51.3
WP_144279104.1\|5262264_5262738_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	2.2e-32	52.2
WP_144279103.1\|5262737_5262944_+\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	3.7e-16	59.1
WP_144279102.1\|5262946_5263336_+	hypothetical protein	E5E3R9	Burkholderia_phage	8.8e-19	42.4
WP_144279101.1\|5263332_5263647_+\|holin	phage holin family protein	A4PE35	Ralstonia_virus	7.8e-10	42.5
WP_144280505.1\|5263643_5264453_+	DUF3380 domain-containing protein	A0A077K808	Ralstonia_phage	7.0e-79	57.9
WP_144280506.1\|5264726_5265005_+	hypothetical protein	S4TNY4	Salmonella_phage	4.3e-12	43.8
WP_144280507.1\|5264979_5265456_+\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	1.4e-26	47.2
WP_144280508.1\|5265452_5265920_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	5.6e-20	40.3
WP_144280509.1\|5265967_5266615_-	hypothetical protein	NA	NA	NA	NA
WP_144280510.1\|5266637_5267039_-	hypothetical protein	NA	NA	NA	NA
WP_144280511.1\|5267198_5267810_+\|plate	phage baseplate assembly protein V	E5E3R1	Burkholderia_phage	1.4e-42	46.4
WP_144280512.1\|5267817_5268174_+	hypothetical protein	E5E3R0	Burkholderia_phage	3.6e-27	52.1
WP_144280513.1\|5268170_5269055_+	hypothetical protein	V9IQV9	Stenotrophomonas_phage	1.1e-61	44.9
WP_144280514.1\|5269008_5269707_+\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	2.1e-23	33.7
WP_144280515.1\|5269710_5271420_+	hypothetical protein	A0A1B0XUH9	Freshwater_phage	9.2e-20	45.0
WP_144280516.1\|5271428_5272043_+	hypothetical protein	V5YST5	Pseudomonas_phage	3.6e-43	48.1
WP_144279090.1\|5272097_5272418_+	hypothetical protein	NA	NA	NA	NA
WP_144280517.1\|5272421_5273336_+	hypothetical protein	NA	NA	NA	NA
WP_144280518.1\|5273338_5273881_+	hypothetical protein	NA	NA	NA	NA
WP_144280519.1\|5274312_5274750_+	hypothetical protein	NA	NA	NA	NA
WP_144280520.1\|5274902_5277311_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	3.9e-24	29.1
WP_144280521.1\|5277485_5278658_+\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	2.3e-163	73.3
WP_144280522.1\|5278684_5279194_+\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.1e-57	63.7
WP_144280805.1\|5279256_5279571_+\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	1.5e-21	59.8
WP_144280523.1\|5279579_5279696_+\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	4.3e-06	70.6
WP_144280524.1\|5279882_5280068_-	hypothetical protein	NA	NA	NA	NA
WP_144280525.1\|5280313_5280958_+	hypothetical protein	NA	NA	NA	NA
WP_144280526.1\|5281667_5284337_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	5.3e-107	36.6
WP_144279074.1\|5284349_5284766_+\|tail	phage tail protein	A0A1S5NTH4	Burkholderia_phage	1.8e-38	59.0
WP_144279073.1\|5284752_5285790_+	phage late control D family protein	A0A077KES1	Ralstonia_phage	5.1e-90	51.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP041730.1|WP_144279057.1|3454230_3454590_+|50S-ribosomal-protein-L20

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP041730.1|WP_144279057.1|3454230_3454590_+|50S-ribosomal-protein-L20

3454230_3454590_+

119 aa aa

3425041-3516923

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP041730_3	Orphan	3.1\|5143382\|28\|NZ_CP041730\|CRISPRCasFinder	5143382-5143409	28	3427128-3427155	0

1. spacer 3.1|5143382|28|NZ_CP041730|CRISPRCasFinder matches to NZ_CP041730 position: 3427128-3427155, mismatch: 0

acccgcaaggagtaggccgtggttgtaa	CRISPR spacer
acccgcaaggagtaggccgtggttgtaa	Protospacer
****************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041730

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information