CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP038864	Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence	1 crisprs	NA	0	1	0	0
NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	4 crisprs	cas14j	0	7	0	0
NZ_CP038862	Campylobacter jejuni strain SCJK2 chromosome, complete genome	1 crisprs	c2c9_V-U4,csa3,cas9,DEDDh,cas4,WYL	0	1	1	0

1. NZ_CP038864

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038864_1

• CRISPR_ID: NZ_CP038864_1
• CRISPR_location: 4419-4505
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP038864_1

Consensus_repeat	Method
ATTATACCGACATTTTGCGACTTATA	CRISPRCasFinder

spacers of NZ_CP038864_1

>1.1|4445|35|NZ_CP038864|CRISPRCasFinder
AAAAGCTTAAAATAATGGTAAAATAGGCTTTTAGG

CRISPR arrays and Neighbor proteins around NZ_CP038864_1

CRISPR arrays

The CRISPR arrays of NZ_CP038864_1

>merge|NZ_CP038864|1|4419-4505|CRISPRCasFinder
ATTATACCGACATTTTGCGACTTATAAAAAGCTTAAAATAATGGTAAAATAGGCTTTTAGGATTATACCGACATTTTGCGATTATAC

>NZ_CP038864|1|1|4419-4505|CRISPRCasFinder
ATTATACCGACATTTTGCGACTTATA	AAAAGCTTAAAATAATGGTAAAATAGGCTTTTAGG
ATTATACCGACATTTTGCGATTATAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038864.1|WP_052773732.1|8031_8346_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP038864.1|WP_002814818.1|6276_6945_-|ParA-family-protein	unknown	unknown	gnl|CDD|349760
NZ_CP038864.1|WP_011117569.1|7711_8035_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP038864.1|WP_143726007.1|2451_3573_-|hypothetical-protein	unknown	unknown	gnl|CDD|274008
NZ_CP038864.1|WP_143726009.1|9403_9874_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP038864.1|WP_052835062.1|4782_5607_+|replication-initiation-protein	unknown	unknown	gnl|CDD|376444
NZ_CP038864.1|WP_143726006.1|1502_2441_-|hypothetical-protein	unknown	unknown	gnl|CDD|369643
NZ_CP038864.1|WP_014517456.1|8520_8958_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP038864.1|WP_014517455.1|8954_9401_-|phage-protein	unknown	unknown	gnl|CDD|370597
NZ_CP038864.1|WP_052835061.1|5637_6267_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP038864.1|WP_052792753.1|10281_10686_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP038864.1|WP_010398003.1|9863_10217_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP038864.1|WP_052835062.1|4782_5607_+|replication-initiation-protein	gnl|CDD|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	6.01448e-20
NZ_CP038864.1|WP_143726006.1|1502_2441_-|hypothetical-protein	gnl|CDD|369643	pfam07996, T4SS, Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.	0.00146766
NZ_CP038864.1|WP_143726007.1|2451_3573_-|hypothetical-protein	gnl|CDD|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.14419e-05
NZ_CP038864.1|WP_014517455.1|8954_9401_-|phage-protein	gnl|CDD|370597	pfam09643, YopX, YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	1.43212e-11
NZ_CP038864.1|WP_002814818.1|6276_6945_-|ParA-family-protein	gnl|CDD|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.28949e-32

Protein sequences

>NZ_CP038864.1|WP_143726007.1|2451_3573_-|hypothetical-protein
MEETREETSKTILSEWQEQFQDKETEIEKTLEKEKSSEELQKELEELNKLNFQEDLENQEVLKSQLEKELKLEDLPQEAKQTLEILEEKEKLDNDMRNFIELTTEYETPNEKRAFIENNLKEVRETPEINESLSILKEQDELQKEIDNTKEEMAREEKELKDQLENANKEKKGLSQEEYDEKFAEMEKEHAKKLKEMEEKMEKLEQNFENSIENLLNSTSLSAILKSLYEMDKSLHLILKEKENNFDELNRQREEKLNLAMQTEKTREVVIDFIKELHQKTKGVENGINEMNKERNFYYELDKLTKNPEKMDLKETQKLQEYINYIDKETPNFKENYPKKYKQTKKIIENNIKKTMDKAKVKTTNSQGQGISL
>NZ_CP038864.1|WP_143726006.1|1502_2441_-|hypothetical-protein
MFLFFFASSLFSAGIPVIDAASIAQAVTSYKQMLKQYEQMIKDTTNFEKQMKELGVDMSSISEILGDTKSLINQTQSLYDGIKAVPDDFYGEIEDITKACNFMEKQSTFFQTKIQNVGTKYTDKVNTCISAISDTTEVDKSINQLNQKLLTISKDDTKTYNETLVQIQNLENAKQYLASKANQDRVNKMLAFYDNYQKNESTNPYTKAKMDKDLQELSKQLLKANNQKQAQALTNSILIKILEMTQRQYELNIYFSQAMTSLGLNGNGGQMNKSPSFELTYQEPQDPKEYNPYLKDIKQQPKDENGFPVFTF
>NZ_CP038864.1|WP_052835062.1|4782_5607_+|replication-initiation-protein
MTKDKKISDNLVYHNDLNCFTFKNFKAVDYNLFFTICYYASQNIKTSKNIIPISLSFEQLRDFLPQEKNKKRFYENVVEFALKLNNLKTSNLTLDNEGYRIYSVSSFFDEITVNEKEEKIVFKIKEKWLDLIVNVVREYTILDLRNFCKISNKYTKNLYRYLSQWQSTGEFIIPFEKFNILLDIPASYDIDKIEQRIIFPSIKLFKENNYFKNLEYIKEKDKTKQGQGGQVTTFTFTFDIPEERREKTLALNKKWGRRRKTENIIPPPLQKGEK
>NZ_CP038864.1|WP_052835061.1|5637_6267_-|hypothetical-protein
MQFKKANIDENTIQDIKEFANNASGETSLQKNEKNTTKRKKKEENKRNTISFEVYLEDELKNKIQDEVTGTLGSRSEFLKKIILEENIYIQNDKDLIEIYNIVQKEGVSPKSFIRKKLGLDTNIEKFNYDKKNKKKVITAWISNEYREKIYEKANQTHSTMRAYAYAKILFYLETKNLFSFEEQMQLTKEANNYDLDFKEFLALKIKSN
>NZ_CP038864.1|WP_002814818.1|6276_6945_-|ParA-family-protein
MKFISICNEKGGCGKTTILSNLAIALYEEGKKNLVIDADPQKSLGTFVSIRNQEGHLKKFDYVIKQGEAYFDYILNLKQNNKDYEFILSDTGGRDSKEMRFALALSDIVIIPIIPSQYDVSVFDRMIEVVKMAKVKNPNLQVFILINLASTNPFLSKKIDELRDYIKSVEQDCIKLLDFVIFQREKYKIFTQMGLGVIEDNKKDDKAYLEMNKLCEFIKKLK
>NZ_CP038864.1|WP_011117569.1|7711_8035_-|hypothetical-protein
MISVTLLFFLFGLNKLLFNAKNTIYKLLSYIKIHAIFINLRTLLFLILVFNADLSYMGTVLFLVDLMTAISIFFAYAQLAYGFSIKDCMFYLVCGKIDKEWLKEIQK
>NZ_CP038864.1|WP_052773732.1|8031_8346_-|hypothetical-protein
MRSSLEKVIKNYSENFSNKKDNDFAQGLIKYLYENAIIGENDKIFLEKNFQYIRVINEKEKRLINVYFCEKPIIDFFQNAEYEKELQYYGINEKDFISLQRSKK
>NZ_CP038864.1|WP_014517456.1|8520_8958_-|hypothetical-protein
MKDEIINIIKEAMGENYKKVLWIFQEHIKNLINCYPSNENGLVFEYKSRISSNDVISIIMFEKTGQKINISLFFENTRKKEKILELNPEEKNSEELILKALFIKNKKVLLSDLFILDKVSMYYTRNKMFKEFQKLMIDNKEKGIL
>NZ_CP038864.1|WP_014517455.1|8954_9401_-|phage-protein
MKLSEFDFRVWDKDEKCFLDPYAKSRAVVKNLPNEKLLNLEIELFTGIKDKNGKKIFEGDILLYKKNKKKYIFKIFDGLSHFKEFLFLKYSFDKESQTIIQSPYSQVELSHKLDCDCNFHNKANEIYFEVIGNIHENEEILKNTELLK
>NZ_CP038864.1|WP_143726009.1|9403_9874_-|hypothetical-protein
MNYKKFQTMSKEEYFKKYNVGIRFLFGCDLNQKNETEMISLRVFLPKKHFQEYKNIDIFKTMDLFKETLLFKGLTEQSIKIDFEKREFVMPDFFIKHDIEIIPYFTQGGEKEEELSKEKFFELLKQNKIKELNYLCFLFFGLFCEEEYKYFCKAKE
>NZ_CP038864.1|WP_010398003.1|9863_10217_-|hypothetical-protein
MLFFGVYTLFISILLSILLSIESLIPSKYNYEKQLVNVILKPILLLLYGVGLIFLFFNTEVANSLAVEIINRINRFRIIESFLSSKEIGLYILAFIILLQVVFIFWAVYKGFIENEL
>NZ_CP038864.1|WP_052792753.1|10281_10686_-|hypothetical-protein
MNCFKKLKEKIILIKIEKEKASEEKFLKECEIKEAEIRMEILEKRKDDLFNQREELIHSILDEASFNALTEERYLELIKNYHILTEDNKANLYGILRRAYNLNSMVGHLKCLDKSINELEEEKDKQVEILKRKK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP038864	Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence	4445-4479	0	1.0
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	33697-33731	1	0.971
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP038864	Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence	4237-4271	4	0.886
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP038864	Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence	4525-4559	4	0.886
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	33777-33811	4	0.886
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	18899-18933	5	0.857
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	19031-19065	5	0.857
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP010074	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence	24431-24465	5	0.857
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP010074	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence	24541-24575	5	0.857
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP007184	Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence	34852-34886	5	0.857
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	22893-22927	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	33489-33523	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	19107-19141	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	31595-31629	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	19239-19273	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	31841-31875	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP010074	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence	36563-36597	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	CP013734	Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence	31793-31827	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	NZ_CP007184	Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence	23168-23202	6	0.829
NZ_CP038864_1	1.1|4445|35|NZ_CP038864|CRISPRCasFinder	4445-4479	35	MN727882	Geobacillus phage GBK1, complete genome	39469-39503	11	0.686

1. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP038864 (Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaaataatggtaaaataggcttttagg	Protospacer
***********************************

2. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 1, identity: 0.971

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaaataatggtaaaataggcttttggg	Protospacer
********************************.**

3. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP038864 (Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.886

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaaataatggtaaaataggctttataa	Protospacer
*******************************  ..

4. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP038864 (Campylobacter jejuni strain SCJK2 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.886

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaaataatggtaaaataggctttagaa	Protospacer
******************************* ...

5. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 4, identity: 0.886

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaaataatggtaaaataggctttagaa	Protospacer
******************************* ...

6. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NC_017284 (Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence) position: , mismatch: 5, identity: 0.857

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggctttagaa	Protospacer
***********.******************* ...

7. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NC_008770 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence) position: , mismatch: 5, identity: 0.857

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggctttagaa	Protospacer
***********.******************* ...

8. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP010074 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence) position: , mismatch: 5, identity: 0.857

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggctttagaa	Protospacer
***********.******************* ...

9. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP010074 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence) position: , mismatch: 5, identity: 0.857

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggctttagaa	Protospacer
***********.******************* ...

10. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP007184 (Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence) position: , mismatch: 5, identity: 0.857

aaaagcttaaaataatggtaaaataggcttttagg--	CRISPR spacer
aaaagcttaaaataatggtaaaata--tttataagta	Protospacer
*************************  .** **.*  

11. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

12. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaattaatggtaaaataggatttataa	Protospacer
*********** *************** ***  ..

13. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NC_017284 (Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

14. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NC_017284 (Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

15. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NC_008770 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

16. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NC_008770 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

17. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP010074 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

18. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to CP013734 (Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

19. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to NZ_CP007184 (Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence) position: , mismatch: 6, identity: 0.829

aaaagcttaaaataatggtaaaataggcttttagg	CRISPR spacer
aaaagcttaaagtaatggtaaaataggatttataa	Protospacer
***********.*************** ***  ..

20. spacer 1.1|4445|35|NZ_CP038864|CRISPRCasFinder matches to MN727882 (Geobacillus phage GBK1, complete genome) position: , mismatch: 11, identity: 0.686

aaaagcttaaaataatggtaaaataggcttttagg-----	CRISPR spacer
aaaagccaaaaataatggtaaaataaa-----aaaaacaa	Protospacer
******. *****************..     *..     

2. NZ_CP038863

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038863_1

• CRISPR_ID: NZ_CP038863_1
• CRISPR_location: 3058-3289
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP038863_1

Consensus_repeat	Method
TATCATACAAACAATTAACAAGAGACTAAAACTAT	CRISPRCasFinder

spacers of NZ_CP038863_1

>1.1|3093|30|NZ_CP038863|CRISPRCasFinder
TTGATTACAAGATGCGAAGAAAAAGAATTT
>1.2|3158|31|NZ_CP038863|CRISPRCasFinder
GCTTTGTTTTTCAAACAAAGAAGAATTATTT
>1.3|3224|31|NZ_CP038863|CRISPRCasFinder
ACATTATAGAACTTGTTTATACAAAAGATTT

CRISPR arrays and Neighbor proteins around NZ_CP038863_1

CRISPR arrays

The CRISPR arrays of NZ_CP038863_1

>merge|NZ_CP038863|1|3058-3289|CRISPRCasFinder
TATCATACAAACAATTAACAAGAGACTAAAACTATTTGATTACAAGATGCGAAGAAAAAGAATTTTATCATACAAACAATTAACAAGAGACTAAAACTATGCTTTGTTTTTCAAACAAAGAAGAATTATTTTACCATACAAACAATTAACAAGAGACTAAAACACTACATTATAGAACTTGTTTATACAAAAGATTTTACCATATAAACAATTAATAAAAATCTAAAATATA

>NZ_CP038863|1|1|3058-3289|CRISPRCasFinder
TATCATACAAACAATTAACAAGAGACTAAAACTAT	TTGATTACAAGATGCGAAGAAAAAGAATTT
TATCATACAAACAATTAACAAGAGACTAAAACTAT	GCTTTGTTTTTCAAACAAAGAAGAATTATTT
TACCATACAAACAATTAACAAGAGACTAAAACACT	ACATTATAGAACTTGTTTATACAAAAGATTT
TACCATATAAACAATTAATAAAAATCTAAAATATA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_172612464.1|11018_11678_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725934.1|4348_4741_+|DUF3310-domain-containing-protein	unknown	unknown	gnl|CDD|371705
NZ_CP038863.1|WP_172612446.1|2555_2753_-|hypothetical-protein	unknown	unknown	gnl|CDD|334588
NZ_CP038863.1|WP_143725931.1|684_1713_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725935.1|4862_5477_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725936.1|5652_6801_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_172612448.1|7157_8396_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725932.1|3461_3842_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_071170427.1|6880_7156_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725933.1|4089_4371_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	4.25312e-53
NZ_CP038863.1|WP_143725934.1|4348_4741_+|DUF3310-domain-containing-protein	gnl|CDD|371705	pfam11753, DUF3310, Protein of unknwon function (DUF3310). This is a family of conserved bacteriophage proteins of unknown function.	1.91674e-07
NZ_CP038863.1|WP_172612446.1|2555_2753_-|hypothetical-protein	gnl|CDD|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	2.05334e-13
NZ_CP038863.1|WP_143725935.1|4862_5477_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.47723e-57
NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.66562e-55

Protein sequences

>NZ_CP038863.1|WP_172612446.1|2555_2753_-|hypothetical-protein
MKAQKLCDRIIQTHSNEGDTIFIPFVGSGSEIISAIRNNRKAFGCEINKEYCNLAKDRINILLKR
>NZ_CP038863.1|WP_143725931.1|684_1713_+|hypothetical-protein
MKEEDIELNNKMRVIEEATNIKQLNLQNEKNKRVVMSHKKEYLDTNTGEVVATEQVNLLKSETRDEFLKLFIHNIDYLGKELEASEFKTFFFVLQKVNYHNCLYIDASFKSDLQKKYSVSAATISRAVKGLEEKNVIIPLSDELRNKYDMFAKNPYIVNPNFIGRGSFRDLKQLRQEVVSVFDFESYEFKKIRNTSAVYKDGTEILQNPDDFIVQQIEVNQDEEQRQQNTNILIKEKNDDKTIDILYSNNQKNIEEPSLFLEENDENDENDEEIETQSISDESLKLQIRMQELKLQQEQEKSKTMQLQLKQQELEFKQKLLKENNNDISKVNEFLALTILNK
>NZ_CP038863.1|WP_143725932.1|3461_3842_+|hypothetical-protein
MKKKYFLIGNMEHVQVIDSIQVIAKGVKWDRFISSCVFNTLKHIINSKHDLCFPQDKEKALFYIKAIIKESKNISKSPNFYNSEEIKKINFLLTNIAEKDKKLFYIVREILNENYVLAKELIEQYE
>NZ_CP038863.1|WP_143725933.1|4089_4371_+|hypothetical-protein
MNTKNYLLKDIIPFSERRRAFLNFVNRQKIILEKNGEGKTSAFFIDTHTLKICIKSYQKEKKINFFDRPPLIELAFNDIKLFLGKINEYRLYK
>NZ_CP038863.1|WP_143725934.1|4348_4741_+|DUF3310-domain-containing-protein
MSIDYINKPPHYQAFGFESIKMVNIIVKEITWNGCVAAYVFNAIKYCIRAKYKNNFNQDKEKALFYIKAIIKEYEKNKNKSIKNTYKLEDIAKIENYLQRIAEKDKKLSKILKEIINENFLLAQQLIKKY
>NZ_CP038863.1|WP_143725935.1|4862_5477_+|BspA-family-leucine-rich-repeat-surface-protein
MPKYFPKTKEELKALVEDESIYLGDIDTSKITDMSYLFKRTKRKDFSGIEKWEVSNVEDMSYMFYGCHVFNQDISKWDTSNVETMKGMFWGCESFNQPLGDWDVSKVTTMSYMFWGCESFNQPLNDWNVSNVKDMKGMFLRNKSFNQPLFTWDTSNVKDMQGMFLNCTSFNQDISGWDVSKTKNISWMFKHSPLRNKKTFIVNN
>NZ_CP038863.1|WP_143725936.1|5652_6801_+|hypothetical-protein
MFNEEYINSQPKNANGFVEKIILENNSENYSLKLIDSFMKDFKEKGIKLNKDFHNIMNSLNNYVIENNVEKDEITNIIDQINQEVINGSFTAKPRQKEIEQNINNAEKKANNLNSEKKNNSYQPLLNDQGFVIVYKAQNEIQEKISDLFDEYYIQNIKDNKLSKDLINSFNNSRNYFTRQEKSLEEINEYLDSFDRRIDKYKKMDTRDEINKLISDNKALFQENRELKAEIRELKAQLKNELRNGSAQDRSYRNNRYDRTRNLRNDSSNGISRSEIDAHVSKVRKEWIEAGKGENPLKRSKEDYNELISLKTKEWTSKEELVKATIELSLKADERAKIKLEESKAKENETAQKYIDPNNDAAFNQLKEEAEHENMKIYKNKQ
>NZ_CP038863.1|WP_071170427.1|6880_7156_+|hypothetical-protein
MNTIASIFGLSQEEYNKLGNNDSALKQLREEIASINNKNSNYFAFSKTKTDEIKPYLSKDKQVFDSVGSFLDREDKERKNTKQLNLNKQRI
>NZ_CP038863.1|WP_172612448.1|7157_8396_+|hypothetical-protein
MFYVEYRGEYYRLGEGVNQNSLVKPFIKDELPEFLDHLLEKNKDVNNNLKPSIEKISKNQIVFKTTSDILLKSVNGEWQALGENCQEPLGTALLKLGCGNPELFDKETHDALIKKVQQQESYNEEELQKNAILGNIQFLTKENQDNTSLCKKEEEINQKIKEKQEELEKKEEEKQETTQEELQNESVKVDHEKDNNTYSNISDSSKQTDYSASLILNWMKDKDKTEEKCFFPIEQNIFSIGAQNQQILNKLSTELMKLPLNDLKDILNNLKEKNRILEEKIKKIKVSNINLELKNSSEITNEIKNENEKKEENIHEKKVSHVETETNAKQITETEEKNAKKVENNQEAQPNNLETALSGVSDAKINGDDDNAMKALRNNEKLYSENNKENKETTSQEEHQDQEQSSIKRQRL
>NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPETKEELQALVEDESIYLGDIDTSKITDMSCLFSWTKRTHFSGIEKWDVSKVENMSHMFAGCKTFNQDLSSWDVSRVEDMECMLHGCHVFNQDISSWDVSGVENMKGMFWGCESFNQDISGWDVGKVETMDSMFSRCYFFNQDLSSWDVSKVENMNSMFHCCENFNQDLSSWDVSNVKNMSGMFYCCYSFNQPLGDWDVSNVEDMSWMFKGCKTFDQDLSSWDVGKVENMKGMFEGCPIDNSNKPDVLQEQSSIKRNKL
>NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPNTKEELQALVKDESIYLGDIDTSKITDMSELFLYSKREDFSGIEKWDVSNVKDMDSMFWGCESFNQPLGDWDVGKVRNMEDMFYDCKTFNQDLSSWDVSRVENMKGMFRGCENFNQPLNDWDVSRVENMRGMFKNCTSFNQPLNDWYVSNVENMKGMFWGCESFNQPLGDWDVSSVENIASMFVYCTSFNQDISGWDVSNVKNMSHMFKNCTSFNQPLGDWDVSNVKDMSWMFKGCESFNQPLNDWDVSRVKDMAGMFDECKTFNQDISGWDVSRVKDMSYMFSGCETFNQDISSWNVSKVESMASMFENCTSFNQPLGDWDVSNVKDMTGMFEFCYAFNQPLNDWDVSKVTTMSWMFSDCYSFNQPLGGWDVSNVKDMYCMFYNCKNFNQDLSSWDVSSVKNMEYMFEDCHSFNQDISGWDVSSVENMDSMFADCPIDNSNIPSQEQSSVKRQRL
>NZ_CP038863.1|WP_172612464.1|11018_11678_+|hypothetical-protein
MFEKCPIDNSNKPDVLQNEIFTKAFRFTDEGDLVITLTPDFEYFLAENQIKNSQDFADKFSDTIDENRYFDIPRILCYKEDLKSTPFEDFDNEYFVFVPNGTNDLDSLSYAVSALNPSIQKDFLIEAMKTKIKEGEINKENLKENLENEIKYISEQIPIVFEGKVGEDTIEKLLKEKETIVLPNVTKYAKNSINEYFENEKVEILEELKKHFNHSYKNK

Crispr_ID: NZ_CP038863_2

• CRISPR_ID: NZ_CP038863_2
• CRISPR_location: 5048-5230
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP038863_2

Consensus_repeat	Method
TATGTTTTGGGGTTGCGAGAGTTTCAACCAACC	CRISPRCasFinder

spacers of NZ_CP038863_2

>2.1|5081|42|NZ_CP038863|CRISPRCasFinder
CATATCCAAGTGGGATACAAGCAATGTTGAAACTATGAAGGG
>2.2|5156|42|NZ_CP038863|CRISPRCasFinder
TTTAGGTGATTGGGATGTTTCAAAAGTCACAACCATGTCTTA

CRISPR arrays and Neighbor proteins around NZ_CP038863_2

CRISPR arrays

The CRISPR arrays of NZ_CP038863_2

>merge|NZ_CP038863|2|5048-5230|CRISPRCasFinder
TATGTTCTATGGTTGCCATGTTTTCAATCAAGACATATCCAAGTGGGATACAAGCAATGTTGAAACTATGAAGGGTATGTTTTGGGGTTGCGAGAGTTTCAACCAACCTTTAGGTGATTGGGATGTTTCAAAAGTCACAACCATGTCTTATATGTTTTGGGGTTGCGAGAGTTTCAACCAACC

>NZ_CP038863|2|2|5048-5230|CRISPRCasFinder
TATGTTCTATGGTTGCCATGTTTTCAATCAAGA	CATATCCAAGTGGGATACAAGCAATGTTGAAACTATGAAGGG
TATGTTTTGGGGTTGCGAGAGTTTCAACCAACC	TTTAGGTGATTGGGATGTTTCAAAAGTCACAACCATGTCTTA
TATGTTTTGGGGTTGCGAGAGTTTCAACCAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038863.1|WP_143725941.1|11687_12308_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_172612464.1|11018_11678_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725944.1|15023_16538_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725934.1|4348_4741_+|DUF3310-domain-containing-protein	unknown	unknown	gnl|CDD|371705
NZ_CP038863.1|WP_172612446.1|2555_2753_-|hypothetical-protein	unknown	unknown	gnl|CDD|334588
NZ_CP038863.1|WP_143725931.1|684_1713_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725942.1|12465_13905_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725932.1|3461_3842_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725943.1|14118_15009_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725936.1|5652_6801_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_172612448.1|7157_8396_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_071170427.1|6880_7156_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725933.1|4089_4371_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP038863.1|WP_143725944.1|15023_16538_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.98764e-52
NZ_CP038863.1|WP_143725934.1|4348_4741_+|DUF3310-domain-containing-protein	gnl|CDD|371705	pfam11753, DUF3310, Protein of unknwon function (DUF3310). This is a family of conserved bacteriophage proteins of unknown function.	1.91674e-07
NZ_CP038863.1|WP_172612446.1|2555_2753_-|hypothetical-protein	gnl|CDD|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	2.05334e-13
NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	4.25312e-53
NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.66562e-55

Protein sequences

>NZ_CP038863.1|WP_143725934.1|4348_4741_+|DUF3310-domain-containing-protein
MSIDYINKPPHYQAFGFESIKMVNIIVKEITWNGCVAAYVFNAIKYCIRAKYKNNFNQDKEKALFYIKAIIKEYEKNKNKSIKNTYKLEDIAKIENYLQRIAEKDKKLSKILKEIINENFLLAQQLIKKY
>NZ_CP038863.1|WP_143725933.1|4089_4371_+|hypothetical-protein
MNTKNYLLKDIIPFSERRRAFLNFVNRQKIILEKNGEGKTSAFFIDTHTLKICIKSYQKEKKINFFDRPPLIELAFNDIKLFLGKINEYRLYK
>NZ_CP038863.1|WP_143725932.1|3461_3842_+|hypothetical-protein
MKKKYFLIGNMEHVQVIDSIQVIAKGVKWDRFISSCVFNTLKHIINSKHDLCFPQDKEKALFYIKAIIKESKNISKSPNFYNSEEIKKINFLLTNIAEKDKKLFYIVREILNENYVLAKELIEQYE
>NZ_CP038863.1|WP_172612446.1|2555_2753_-|hypothetical-protein
MKAQKLCDRIIQTHSNEGDTIFIPFVGSGSEIISAIRNNRKAFGCEINKEYCNLAKDRINILLKR
>NZ_CP038863.1|WP_143725931.1|684_1713_+|hypothetical-protein
MKEEDIELNNKMRVIEEATNIKQLNLQNEKNKRVVMSHKKEYLDTNTGEVVATEQVNLLKSETRDEFLKLFIHNIDYLGKELEASEFKTFFFVLQKVNYHNCLYIDASFKSDLQKKYSVSAATISRAVKGLEEKNVIIPLSDELRNKYDMFAKNPYIVNPNFIGRGSFRDLKQLRQEVVSVFDFESYEFKKIRNTSAVYKDGTEILQNPDDFIVQQIEVNQDEEQRQQNTNILIKEKNDDKTIDILYSNNQKNIEEPSLFLEENDENDENDEEIETQSISDESLKLQIRMQELKLQQEQEKSKTMQLQLKQQELEFKQKLLKENNNDISKVNEFLALTILNK
>NZ_CP038863.1|WP_143725936.1|5652_6801_+|hypothetical-protein
MFNEEYINSQPKNANGFVEKIILENNSENYSLKLIDSFMKDFKEKGIKLNKDFHNIMNSLNNYVIENNVEKDEITNIIDQINQEVINGSFTAKPRQKEIEQNINNAEKKANNLNSEKKNNSYQPLLNDQGFVIVYKAQNEIQEKISDLFDEYYIQNIKDNKLSKDLINSFNNSRNYFTRQEKSLEEINEYLDSFDRRIDKYKKMDTRDEINKLISDNKALFQENRELKAEIRELKAQLKNELRNGSAQDRSYRNNRYDRTRNLRNDSSNGISRSEIDAHVSKVRKEWIEAGKGENPLKRSKEDYNELISLKTKEWTSKEELVKATIELSLKADERAKIKLEESKAKENETAQKYIDPNNDAAFNQLKEEAEHENMKIYKNKQ
>NZ_CP038863.1|WP_071170427.1|6880_7156_+|hypothetical-protein
MNTIASIFGLSQEEYNKLGNNDSALKQLREEIASINNKNSNYFAFSKTKTDEIKPYLSKDKQVFDSVGSFLDREDKERKNTKQLNLNKQRI
>NZ_CP038863.1|WP_172612448.1|7157_8396_+|hypothetical-protein
MFYVEYRGEYYRLGEGVNQNSLVKPFIKDELPEFLDHLLEKNKDVNNNLKPSIEKISKNQIVFKTTSDILLKSVNGEWQALGENCQEPLGTALLKLGCGNPELFDKETHDALIKKVQQQESYNEEELQKNAILGNIQFLTKENQDNTSLCKKEEEINQKIKEKQEELEKKEEEKQETTQEELQNESVKVDHEKDNNTYSNISDSSKQTDYSASLILNWMKDKDKTEEKCFFPIEQNIFSIGAQNQQILNKLSTELMKLPLNDLKDILNNLKEKNRILEEKIKKIKVSNINLELKNSSEITNEIKNENEKKEENIHEKKVSHVETETNAKQITETEEKNAKKVENNQEAQPNNLETALSGVSDAKINGDDDNAMKALRNNEKLYSENNKENKETTSQEEHQDQEQSSIKRQRL
>NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPETKEELQALVEDESIYLGDIDTSKITDMSCLFSWTKRTHFSGIEKWDVSKVENMSHMFAGCKTFNQDLSSWDVSRVEDMECMLHGCHVFNQDISSWDVSGVENMKGMFWGCESFNQDISGWDVGKVETMDSMFSRCYFFNQDLSSWDVSKVENMNSMFHCCENFNQDLSSWDVSNVKNMSGMFYCCYSFNQPLGDWDVSNVEDMSWMFKGCKTFDQDLSSWDVGKVENMKGMFEGCPIDNSNKPDVLQEQSSIKRNKL
>NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPNTKEELQALVKDESIYLGDIDTSKITDMSELFLYSKREDFSGIEKWDVSNVKDMDSMFWGCESFNQPLGDWDVGKVRNMEDMFYDCKTFNQDLSSWDVSRVENMKGMFRGCENFNQPLNDWDVSRVENMRGMFKNCTSFNQPLNDWYVSNVENMKGMFWGCESFNQPLGDWDVSSVENIASMFVYCTSFNQDISGWDVSNVKNMSHMFKNCTSFNQPLGDWDVSNVKDMSWMFKGCESFNQPLNDWDVSRVKDMAGMFDECKTFNQDISGWDVSRVKDMSYMFSGCETFNQDISSWNVSKVESMASMFENCTSFNQPLGDWDVSNVKDMTGMFEFCYAFNQPLNDWDVSKVTTMSWMFSDCYSFNQPLGGWDVSNVKDMYCMFYNCKNFNQDLSSWDVSSVKNMEYMFEDCHSFNQDISGWDVSSVENMDSMFADCPIDNSNIPSQEQSSVKRQRL
>NZ_CP038863.1|WP_172612464.1|11018_11678_+|hypothetical-protein
MFEKCPIDNSNKPDVLQNEIFTKAFRFTDEGDLVITLTPDFEYFLAENQIKNSQDFADKFSDTIDENRYFDIPRILCYKEDLKSTPFEDFDNEYFVFVPNGTNDLDSLSYAVSALNPSIQKDFLIEAMKTKIKEGEINKENLKENLENEIKYISEQIPIVFEGKVGEDTIEKLLKEKETIVLPNVTKYAKNSINEYFENEKVEILEELKKHFNHSYKNK
>NZ_CP038863.1|WP_143725941.1|11687_12308_+|hypothetical-protein
MHKIEDIFNNELGSIGNKNNLSKDSAFISLRLKQESLNFFQFIYDNNESFEKVALRVAKQNNFTSREEKFEWLSENYIFFDTFVKNNLYLLENIQSSNFLEKQNEIIDKAIEECLFQTILENENVAKFFAILGAIKQENISKLNNDEVQSIKNLVNNGKNESLSQLCAKAVALIRYERENEFNPRDIDKNGILDYTEKNKNSIRKL
>NZ_CP038863.1|WP_143725942.1|12465_13905_+|hypothetical-protein
MPKLNNLEKAKFSKIVDEQINDLAKTINKDIYTNGIYDKILKNIVPSLEIICSHYSKHFFNNNEKFAEMFIKFSALDFLDKNYILDDVLKELLERYKNVCMDCSTKIQYFGAYGQYLFLQDNNESSFSRYLTKIVIGIFNILAYNELQNKSEEERDNLIFSMVFSIKDSFYRLHNLSAKNETNLSMDLKSLAIGFCNDIINEKSYENPFRIEGKYQNLDSLIKRMILVTFSTVHKHLNPYLSYLFEQNWVKMASNKICMYEAYGQQYKEIMTDVIPKEKIMRYFPAYYVDTNAFDLKDFEMGMIFPAIEESDNRNFDFNFFNKFILNHIPISRVFAGEVAHFSMKSLAKQYGNEEIQRIYEGSYCENILKIFLKGCMNKHKEIIDELNFRFKSYIKVYEPTINEHNAIFIDNEKCKEFANKVYNVWANDNKLIQAIAKKDNWIDIANLAINSIRDNAHLFAPEKTLRELVWYDRYKPRL
>NZ_CP038863.1|WP_143725943.1|14118_15009_+|hypothetical-protein
MVSMLFFCVVGGVLWVYSSSLFLAKDVVRSYALIMVFTSFLCFGTSILLLRNNEDTSYLYLFFIPLFIFSMFYIKKRKKVRGLEIVADQQRYWDEITSDEVYDFFKHRKINKGKRFAVEVNEQERKFHKAKTPNSKNNVDNYISVSFWKRLKKIENEFTFVENIEQIEEYPLYHAVFNKIKDIIKSSEKKVNYDEILKENNYIVEFFLLYLWENYTQRINISNANLILLAENEIQEDFVGAMDNVDLNSVKKRGAALYFRYIVYHKREGNYIDFALLNKQQDEPEENNNTGKSVDI
>NZ_CP038863.1|WP_143725944.1|15023_16538_+|BspA-family-leucine-rich-repeat-surface-protein
MLDKETLIENIKEKKLELKSDFDKILNIIHLAFDQAEKKYNYTIEQIEGETNEFISKNPLDRRHNPSFNFAEQLRILLHDAAQNIERSVSKNWITNSDQNFRKRNFVTESTREVGGDFNHGSEERTRTSANHRGVHENLESKIFEKLDIKKDEIDNFVKKLKNNISLINSKESIINLLIKNIDTIGTNPNISFNKKKDLIKTYLAIKEISPNLIFPEKTQNILEKLLKELLNEKKYQPENKNELLKLVNNLNIHLGDIDTSKITDMSELFKNSTRTDFSGIEKWDVSSVVNMRGMFSDCKFFNEDIETWDVSHVVDMAFMFSGCENFNQPLDKWEVSNSRNMAFMFKGCESFNQELNFWDVSRVENMHHMFEECHSFDQDISSWNTSNVENMAGMFWGCESFNQPLNDWNVSNVKDMSWMFLNCTSFNQDLDKWRVGNVLDMTFMFKGCKNFNADISDWNVGKVESMDFMFEGCHAFNQDISGWKHYSSYINDVVIEYFNRKKL

Crispr_ID: NZ_CP038863_3

• CRISPR_ID: NZ_CP038863_3
• CRISPR_location: 18342-18440
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP038863_3

Consensus_repeat	Method
TATGTTTGAAGAATGTCATTCTTT	CRISPRCasFinder

spacers of NZ_CP038863_3

>3.1|18366|51|NZ_CP038863|CRISPRCasFinder
CAACCAAGACCTTAGCTCTTGGGATGTATCAAGTGTTGTAAACATGAAAGC

CRISPR arrays and Neighbor proteins around NZ_CP038863_3

CRISPR arrays

The CRISPR arrays of NZ_CP038863_3

>merge|NZ_CP038863|3|18342-18440|CRISPRCasFinder
TATGTTTGAAGAATGTCATTCTTTCAACCAAGACCTTAGCTCTTGGGATGTATCAAGTGTTGTAAACATGAAAGCTATGTTTGAAGAATGTCATTCCTT

>NZ_CP038863|3|3|18342-18440|CRISPRCasFinder
TATGTTTGAAGAATGTCATTCTTT	CAACCAAGACCTTAGCTCTTGGGATGTATCAAGTGTTGTAAACATGAAAGC
TATGTTTGAAGAATGTCATTCCTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038863.1|WP_172612455.1|23002_23737_+|ParA-family-protein	unknown	unknown	gnl|CDD|349760
NZ_CP038863.1|WP_143725942.1|12465_13905_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725946.1|17001_17430_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_172612464.1|11018_11678_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725944.1|15023_16538_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725941.1|11687_12308_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725951.1|24240_24798_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_070243560.1|23824_24106_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725952.1|24814_25903_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725945.1|16548_17001_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725949.1|21929_22493_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_172612467.1|20009_21755_+|TraM-recognition-domain-containing-protein	unknown	unknown	gnl|CDD|378923
NZ_CP038863.1|WP_143725953.1|27559_27847_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725943.1|14118_15009_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_070243617.1|27846_28632_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143726004.1|27101_27440_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_172612452.1|18545_19850_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_071170414.1|17426_17777_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP038863.1|WP_143725952.1|24814_25903_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.02044e-50
NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.66562e-55
NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	4.25312e-53
NZ_CP038863.1|WP_172612455.1|23002_23737_+|ParA-family-protein	gnl|CDD|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	4.93768e-25
NZ_CP038863.1|WP_172612467.1|20009_21755_+|TraM-recognition-domain-containing-protein	gnl|CDD|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	2.33817e-12
NZ_CP038863.1|WP_172612452.1|18545_19850_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.37205e-54
NZ_CP038863.1|WP_143726004.1|27101_27440_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.82296e-24
NZ_CP038863.1|WP_143725944.1|15023_16538_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.98764e-52

Protein sequences

>NZ_CP038863.1|WP_071170414.1|17426_17777_+|hypothetical-protein
MKKKLFGLVILSVLLTNNLFASCSGTCEDAAQLPFIAEQIVKQFKNFESQTAQTINEVNKILNESFVETEKEIQKQEQILSALKQNQLLDNKNIEFLMLQNNKLQNNINTTNAIGN
>NZ_CP038863.1|WP_143725946.1|17001_17430_+|hypothetical-protein
MTTEDLQNQIEILIEERNRFNELALDDDGIIPSKVWDKEKKQFISKVSDEELVEFIILSELTMFEGSIEEKLAFARFYGEYCKRNYTDMLIDIICNQKNSEMEFVTSLVLNLKRFNLTKILNIIFKDKNNFNNILNIAEENI
>NZ_CP038863.1|WP_143725945.1|16548_17001_+|hypothetical-protein
MNSKKLRILMSSAESYDLRRENIHPLLRVFNPYGVYSFQKLDSNFCFGKEYNMPQSVTEVDILEKQVYEAKQNFEKALEALKTQHSMSDEAYRNLTQQILKCLKKEEYKELDFITFIISKKDIEILAGLKEKHLIAEKQLSNYKENNKGE
>NZ_CP038863.1|WP_143725944.1|15023_16538_+|BspA-family-leucine-rich-repeat-surface-protein
MLDKETLIENIKEKKLELKSDFDKILNIIHLAFDQAEKKYNYTIEQIEGETNEFISKNPLDRRHNPSFNFAEQLRILLHDAAQNIERSVSKNWITNSDQNFRKRNFVTESTREVGGDFNHGSEERTRTSANHRGVHENLESKIFEKLDIKKDEIDNFVKKLKNNISLINSKESIINLLIKNIDTIGTNPNISFNKKKDLIKTYLAIKEISPNLIFPEKTQNILEKLLKELLNEKKYQPENKNELLKLVNNLNIHLGDIDTSKITDMSELFKNSTRTDFSGIEKWDVSSVVNMRGMFSDCKFFNEDIETWDVSHVVDMAFMFSGCENFNQPLDKWEVSNSRNMAFMFKGCESFNQELNFWDVSRVENMHHMFEECHSFDQDISSWNTSNVENMAGMFWGCESFNQPLNDWNVSNVKDMSWMFLNCTSFNQDLDKWRVGNVLDMTFMFKGCKNFNADISDWNVGKVESMDFMFEGCHAFNQDISGWKHYSSYINDVVIEYFNRKKL
>NZ_CP038863.1|WP_143725943.1|14118_15009_+|hypothetical-protein
MVSMLFFCVVGGVLWVYSSSLFLAKDVVRSYALIMVFTSFLCFGTSILLLRNNEDTSYLYLFFIPLFIFSMFYIKKRKKVRGLEIVADQQRYWDEITSDEVYDFFKHRKINKGKRFAVEVNEQERKFHKAKTPNSKNNVDNYISVSFWKRLKKIENEFTFVENIEQIEEYPLYHAVFNKIKDIIKSSEKKVNYDEILKENNYIVEFFLLYLWENYTQRINISNANLILLAENEIQEDFVGAMDNVDLNSVKKRGAALYFRYIVYHKREGNYIDFALLNKQQDEPEENNNTGKSVDI
>NZ_CP038863.1|WP_143725942.1|12465_13905_+|hypothetical-protein
MPKLNNLEKAKFSKIVDEQINDLAKTINKDIYTNGIYDKILKNIVPSLEIICSHYSKHFFNNNEKFAEMFIKFSALDFLDKNYILDDVLKELLERYKNVCMDCSTKIQYFGAYGQYLFLQDNNESSFSRYLTKIVIGIFNILAYNELQNKSEEERDNLIFSMVFSIKDSFYRLHNLSAKNETNLSMDLKSLAIGFCNDIINEKSYENPFRIEGKYQNLDSLIKRMILVTFSTVHKHLNPYLSYLFEQNWVKMASNKICMYEAYGQQYKEIMTDVIPKEKIMRYFPAYYVDTNAFDLKDFEMGMIFPAIEESDNRNFDFNFFNKFILNHIPISRVFAGEVAHFSMKSLAKQYGNEEIQRIYEGSYCENILKIFLKGCMNKHKEIIDELNFRFKSYIKVYEPTINEHNAIFIDNEKCKEFANKVYNVWANDNKLIQAIAKKDNWIDIANLAINSIRDNAHLFAPEKTLRELVWYDRYKPRL
>NZ_CP038863.1|WP_143725941.1|11687_12308_+|hypothetical-protein
MHKIEDIFNNELGSIGNKNNLSKDSAFISLRLKQESLNFFQFIYDNNESFEKVALRVAKQNNFTSREEKFEWLSENYIFFDTFVKNNLYLLENIQSSNFLEKQNEIIDKAIEECLFQTILENENVAKFFAILGAIKQENISKLNNDEVQSIKNLVNNGKNESLSQLCAKAVALIRYERENEFNPRDIDKNGILDYTEKNKNSIRKL
>NZ_CP038863.1|WP_172612464.1|11018_11678_+|hypothetical-protein
MFEKCPIDNSNKPDVLQNEIFTKAFRFTDEGDLVITLTPDFEYFLAENQIKNSQDFADKFSDTIDENRYFDIPRILCYKEDLKSTPFEDFDNEYFVFVPNGTNDLDSLSYAVSALNPSIQKDFLIEAMKTKIKEGEINKENLKENLENEIKYISEQIPIVFEGKVGEDTIEKLLKEKETIVLPNVTKYAKNSINEYFENEKVEILEELKKHFNHSYKNK
>NZ_CP038863.1|WP_143725939.1|9209_10598_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPNTKEELQALVKDESIYLGDIDTSKITDMSELFLYSKREDFSGIEKWDVSNVKDMDSMFWGCESFNQPLGDWDVGKVRNMEDMFYDCKTFNQDLSSWDVSRVENMKGMFRGCENFNQPLNDWDVSRVENMRGMFKNCTSFNQPLNDWYVSNVENMKGMFWGCESFNQPLGDWDVSSVENIASMFVYCTSFNQDISGWDVSNVKNMSHMFKNCTSFNQPLGDWDVSNVKDMSWMFKGCESFNQPLNDWDVSRVKDMAGMFDECKTFNQDISGWDVSRVKDMSYMFSGCETFNQDISSWNVSKVESMASMFENCTSFNQPLGDWDVSNVKDMTGMFEFCYAFNQPLNDWDVSKVTTMSWMFSDCYSFNQPLGGWDVSNVKDMYCMFYNCKNFNQDLSSWDVSSVKNMEYMFEDCHSFNQDISGWDVSSVENMDSMFADCPIDNSNIPSQEQSSVKRQRL
>NZ_CP038863.1|WP_143725938.1|8405_9200_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPETKEELQALVEDESIYLGDIDTSKITDMSCLFSWTKRTHFSGIEKWDVSKVENMSHMFAGCKTFNQDLSSWDVSRVEDMECMLHGCHVFNQDISSWDVSGVENMKGMFWGCESFNQDISGWDVGKVETMDSMFSRCYFFNQDLSSWDVSKVENMNSMFHCCENFNQDLSSWDVSNVKNMSGMFYCCYSFNQPLGDWDVSNVEDMSWMFKGCKTFDQDLSSWDVGKVENMKGMFEGCPIDNSNKPDVLQEQSSIKRNKL
>NZ_CP038863.1|WP_172612452.1|18545_19850_+|BspA-family-leucine-rich-repeat-surface-protein
MAKFTPETKEELKALVKDESIHLGDIDTSKITDMSELFLYSKREDFSGIEKWDVSKVETMACMFYKCYTFNQSLGDWDVSNVKDTQEMFRGCKTFNQDLSSWDVSKVKDMTAMFSGCHAFNQDLSSWDVSNVENMDSIFAGCHSFNQPLNDWDVGKVEDMAFIFYNCKTFNQDISGWDVSRVKDMSYMFSGCESFNQDLSSWDVSKVVDMSWMFSDCHSFNQDLSSWYVSKVKNMSYMFKYCKINENFKPSNKKQKTRISELEKILNEIKSILSTIQIIEEKNVEFRKDMNIIAQHIVALRETITQKKFTPKTKEELKVLVKDEAIHLGDIDTSKITDMSYLFANSTRTDFSGIEKWDVSDVENMSYMFADCKTFNQDLSSWDVSSVKTMACMFRSCHAFNQDLSSWDVGKVKDMDFMFEGCKNLKQSYRIKRR
>NZ_CP038863.1|WP_172612467.1|20009_21755_+|TraM-recognition-domain-containing-protein
MSANILTFLWTAIILHFAVVLGLFMSEEKVDKKEAIIPNEPGEKYLVTLGNEVKKFYGDAVKSAKAINNQTRPLLVNAETVKRHFLCMATIGAGKSVFMKGVMEQYIALGGGLLCVDGKGTDEFAREIFGLVSSLGREDDFVYLNFLDMSNTHTINPLLSGNANTLFEIMQPLLIGEEDNWKSKAKEFMLNVLKLCVWKRDHESDFVFDFSYLTKIMNMTTLSRLGLEYKHLAQKNNRDYDTGVEDYIKWLTASLSIDLDEFLNADPNDPNYIKKIEKASNNTDLSGVYTAGVSIGYWTKPLTTLGSDYGRIFNAPNPSISLWEATQRNKIIFVTLPTMDSDTTPKELGRLILSLIKAVAAKKAQDADEPTIPFLCCLDELGSYVVEGFGRLESKSRSLGISVFPFFQSPAQIDVVAKNDYERKEMIDVTGVHILMKNMHPETTEFYAKMTSKIKVLTRQHSERREGAKTPGNSEDSYQFEEKDAIEHDEVVNMNNGELIMFANGKMHRGVARAESSLLSHGKKTTYDHRIPITEYVPKNLFFTEIVSILKKPAMQEMYTFFTKDGVMEKYKSNEELEDVA
>NZ_CP038863.1|WP_143725949.1|21929_22493_+|hypothetical-protein
MTRAQLKDFIKEKYIAEGKWIITYQDVKKHFNEKTLAISMSRHINKNILMQVKRGWYVVPSMLENIKYPFENFLAEYLGKDNFYISAESALYDYKLIGKKPKMLMCVINKKRFTRSCLIETPLGTADITSKTFKNFYSFLKEECVFNASKNIWIANPDLARKDFFDTINTRLKHNKSLFDMHHSLNF
>NZ_CP038863.1|WP_172612455.1|23002_23737_+|ParA-family-protein
MVITVTTEKGGSGKSTIAINIAFALKEKQPKAKILLIDCDPQGSINTFDKIRKMDTNLPKIYDLVKDYKLYKENVSIEKAKEIYDYIIFDSGGRATNEMRDTILVSDLAVIPTCPKSELDFDAFGRMMVFFEVTKKLAETIQDMEGINLDKNGKLKTKALAVMSMATSNPLMVKTKTIPYRDNIRKIYTDNTNDIILANNIICERAAFANSISEGKGVIEYVNENHPAYKEIMELTNEILNYKE
>NZ_CP038863.1|WP_070243560.1|23824_24106_+|hypothetical-protein
MGKYGKTAVNDVNKVADDFLKGIEKPKAQEESKNKENKKVGPKPKEASKKRTLTVIIKITADEKKEIEKYAEIIGTPVAVLARQALLKEIRNK
>NZ_CP038863.1|WP_143725951.1|24240_24798_+|hypothetical-protein
MKIDEIIKEQEAQISNIIEDYAYDNKNVDSENGNNLFDELVDAYQDGSYTDMDDRISEIADSNVPIYFQDYIKWFEKNYEDIEEEDFCILKDDEKNGVGFVSKVIPSAIYRANINFLYSMQDEAKKKAAILILKEYEIPSVSNEKLEELFNSLKNTEDIRIEVEVFVDDLKEEAQEESKKKIKEK
>NZ_CP038863.1|WP_143725952.1|24814_25903_+|BspA-family-leucine-rich-repeat-surface-protein
MAKFTPETKEELQALVDNEVIHLGDIDTSKITDMSYLFANSDRTDFSGIETWNTSNVENMFSMFWGCKNFNQPLGDWDVSEVETMAFMFYDCESFNADISSWDTSNVETMKGMFEGCHAFNQDLSSWNVSGVKDMASMFKYCENFNQPLNDWNVSSVKYMAFMFSGCHSFNQDLSSWNVSGVKDMSWMFEDCKTFNQDISGWDVSKVENMAGMFTYCESFDQNISGWDISNVKDMSWMFEGCHAFNQPLNDWNTSSVEDIKYMFWGCESFNQDISGWDVSKVRNMYGMFKNCTSFNQDISKWNTSNIKNMSHMFSGCHAFNQDISSWDVSGVENMDSMFADCPIDNSNKPSQEQSSIKRQRL
>NZ_CP038863.1|WP_143726004.1|27101_27440_+|BspA-family-leucine-rich-repeat-surface-protein
MPKYFPETKEELQALVKDESIYLGDIDTSKITDMSELFKNSTREDFSGIEKWDVSNATNMRAMFENCTSFNQDISAWDVSSVKNMEDMFENCPIDNSNIPSQEQSSIKRNKL
>NZ_CP038863.1|WP_143725953.1|27559_27847_+|hypothetical-protein
MKKILLLALSLTISFACLCSTAIKENFDKFTNTVTQSVKKQTENITSINIPEVKKSSELIKKQNDQIAKNNEARKAYTIKKENLVFELDRKNKIL
>NZ_CP038863.1|WP_070243617.1|27846_28632_+|hypothetical-protein
MIQKARSSTSQSFLREAEDCVLVLDNDKNVRYFQNRIDEMVKRRKDDAYTFTGAKSTKEELLALLGGFGEVKTANIWARNIIIELEKINELRAILAKRLADENIYGVLEIHLQDREINSPHIQFIGIKAEEAEIIIAETLVEMKYELSVENAIGRKDYIPFYEYEAHSKIESLSEKLEEQRQEQKFNEIKNENVSFKKQMEEERDKFYKILNEKINNVKKTIKQISYPKINIKNNYDFYKKTTQELVDNVKERINKLRKRR

Crispr_ID: NZ_CP038863_4

• CRISPR_ID: NZ_CP038863_4
• CRISPR_location: 52752-52850
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP038863_4

Consensus_repeat	Method
TTCAACCAAGACCTAAGCTCTTGG	CRISPRCasFinder

spacers of NZ_CP038863_4

>4.1|52776|51|NZ_CP038863|CRISPRCasFinder
AATACCAGCAAGGTTGAGAATATGGAAGCTATGTTTGAAAGTTGTGAAAAC

CRISPR arrays and Neighbor proteins around NZ_CP038863_4

CRISPR arrays

The CRISPR arrays of NZ_CP038863_4

>merge|NZ_CP038863|4|52752-52850|CRISPRCasFinder
TTCAACCAAGACCTAAGCTCTTGGAATACCAGCAAGGTTGAGAATATGGAAGCTATGTTTGAAAGTTGTGAAAACTTCAACCAAGACCTAAGCTCTTGG

>NZ_CP038863|4|4|52752-52850|CRISPRCasFinder
TTCAACCAAGACCTAAGCTCTTGG	AATACCAGCAAGGTTGAGAATATGGAAGCTATGTTTGAAAGTTGTGAAAAC
TTCAACCAAGACCTAAGCTCTTGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038863.1|WP_143725983.1|56898_58518_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725985.1|60354_61350_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725975.1|49816_50212_+|hypothetical-protein	unknown	unknown	gnl|CDD|376403
NZ_CP038863.1|WP_143725974.1|49545_49836_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725987.1|64925_65726_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725976.1|50881_51256_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725972.1|45153_46278_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725981.1|55234_55804_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725984.1|58514_60212_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725986.1|61359_62259_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725979.1|53193_53667_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_172612459.1|62255_63482_+|DUF285-domain-containing-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725977.1|51273_52437_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_134225770.1|50363_50885_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_057993339.1|47742_48894_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl|CDD|367119
NZ_CP038863.1|WP_143725973.1|49237_49546_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_143725980.1|54139_55225_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_143725982.1|55813_56887_+|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NZ_CP038863.1|WP_071170454.1|46812_47730_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038863.1|WP_070243638.1|46327_46810_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP038863.1|WP_143725985.1|60354_61350_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.0485e-52
NZ_CP038863.1|WP_143725975.1|49816_50212_+|hypothetical-protein	gnl|CDD|376403	pfam00856, SET, SET domain. SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.	0.000263595
NZ_CP038863.1|WP_143725987.1|64925_65726_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.4827e-53
NZ_CP038863.1|WP_143725977.1|51273_52437_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.00854e-51
NZ_CP038863.1|WP_143725986.1|61359_62259_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.87552e-57
NZ_CP038863.1|WP_057993339.1|47742_48894_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl|CDD|367119	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.	3.64779e-16
NZ_CP038863.1|WP_143725980.1|54139_55225_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.6229e-52
NZ_CP038863.1|WP_143725981.1|55234_55804_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.21668e-53
NZ_CP038863.1|WP_172612459.1|62255_63482_+|DUF285-domain-containing-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	5.0889e-53
NZ_CP038863.1|WP_143725982.1|55813_56887_+|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.0256e-54

Protein sequences

>NZ_CP038863.1|WP_143725977.1|51273_52437_+|BspA-family-leucine-rich-repeat-surface-protein
MQTYKAKNNKDLKLIVDNEEINLGVIDVSEVIDFSGVFKNSTRTDFSGIEKWDVSNATNMRAMFENCTSFNQDISGWDVSRVYDFSSMFKGCENFNQDISKWNTMSAYDMDYMFYKCEEFDQDLSSWNINKVKHTQEIFKSCKIKSQHQLQIKHNIPETKAELILLIRNFDISLKDIDTSNITDMSELFKNSLRRDFIGIETWNTSNVKTMRAMFQGCQEFDRDISNWDVSRVTNMAHMFDDCTSFNQDISGWDVSRVTNMAGMFAGATSFNQPLNSWELGSLLNASSMFKNAINFNQPLNDWDVSSVEDMYEMFQGATSFNQDISSWDLKSIALKNYMFKSCPIENNYRPLENDTDENQVNKNKILLLFFKLISIFQKQSSLTKMK
>NZ_CP038863.1|WP_143725976.1|50881_51256_+|hypothetical-protein
MKKQIVGLFLTFALAVNSNAVVWSLAIPDGWEDAILHLLDVSKELNDKSKNKWNNDIKPLIEQIKEETNKKKKLLEEINALEKENSKSEKNMIFLLKQEKKLLGNSQTIISTTKDLKDASSEIQ
>NZ_CP038863.1|WP_134225770.1|50363_50885_+|hypothetical-protein
MLRRITIGNKKLWTTYISEDNSKFFFELYRRKEVKNMAFKCLEKFYLSNKLITALVKNNFLNFYFNNTSALMEFNNKKEFIKDELRIIYKQNYQKYMHELALIFKDIKAETTFKYMKESDYNPKKQIGKIYKESSSGDFAIKENNAFREQLLSIQKIIKNNIAKENIHLGANT
>NZ_CP038863.1|WP_143725975.1|49816_50212_+|hypothetical-protein
MKHREINIFGNNLEFLKNIIIDNIPNTFIKKSKIHNFGLFSKINIKKGTILSILDGQILSIQEYKKLKNNICSKVDNSNKPEFENYIFMEYNYLDSENIIVRPFRTKYSYINHSDKANVSILRNPTRIYFY
>NZ_CP038863.1|WP_143725974.1|49545_49836_+|hypothetical-protein
MFKKTLSMIIIATSICSAVSLSGGVNNPSDAIKDLSDTQKKGNQTAQKQLTLTQQLTALASNSYIGISNLVFLSYQRNKLINNNFKIESLNETQRN
>NZ_CP038863.1|WP_143725973.1|49237_49546_+|hypothetical-protein
MANIRNYTINDILKEQFKIRLGFKYYFTSIQNLFCFMILYFSFDDLTNFLGVYAFSCILGYRFLFNYTKSGQQFSPFFLKNLGKITRKIRNKANSRKVHKEK
>NZ_CP038863.1|WP_057993339.1|47742_48894_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MKFNIDKLEYANFAKEEEFEEMDIVKGKNKEGICFGETNRKIEIKANNPNSVLLMAEAGTGSVSTFITPNLLKISNSSIVLDFEREIYDKTSEHRKKHLNNEILLFEPFSDDNTLFFNPFDNSIIENMNLEELSDFAFKIAKAIFDGNEIGIEKDLFVLFILHNCKNIFLSNLSKISLNFEQFLDFLEKIKNNNSDVVLIKHISKIQKKIKDEKEYVKNIQAYNSVMKIFDNSKIANFTSKMNFRFEDFVEKKVTAYLSIPYETKNIELFAPVARVFIETLYIKLRQKSNSDFIYLYFNQFLTFGKNLTLLERLETAPSKIVPILITNKLYEKIQTHYSEIIDFIENRVKYFVVYDHRENDKVYIFVNNFLNKPIKVYKNPKS
>NZ_CP038863.1|WP_071170454.1|46812_47730_+|hypothetical-protein
MINPQDSANLQKEVMQTADDANKNIDFGKETYKTNAFSEKIPGSFERGFEGIANVVSDSEELKLKSGQFGRKCGEYLKQIAENPMNKVANKAISGALEFKDVVKSYYELMNACNERRMKARLQEGGMDMFLTKTLVNMIEWLLKNFRDDLEDLVKLHTIGKSLNEMQKGQKYTKEAIVNAIEQEIRNNQELSSETKENLLRQMSNENTQNVFYNISKEAMNRTISTVENAGIKNGDWDAKAAEEALKKTEVLTASDCAKGTENAQQNQQTKDKFFNKAYENNYKESKNNITTTEEQEYTFKRHQQ
>NZ_CP038863.1|WP_070243638.1|46327_46810_+|hypothetical-protein
MASSNIELLNEKKNMELKDVVERLQIIEEKNVEFRKDMNIIAQHIVALRNNLDNKVASLAESCDIGDKATKDFLGVLVKKLEAGEVDVFTAMIRTMINDDSVEERKKLFEDIQRYIDSRIGSDKKANSNSGFSVLMTTVKYLVNIGMILAICYLFYRGRM
>NZ_CP038863.1|WP_143725972.1|45153_46278_+|hypothetical-protein
MTTIILSINANAANIDNILGDFLGGIFSALDKSSSQSLSMCYTPESNFGLDSSGDICSIVNKLPSMDVCSLVPEIPGFRKKSQSVSLSGLRQLCKANTKAFSDISSSALNNVAENVIDNSTGEISETTKLPNGKTVGSFVRSWNINNFVKEQTGKTNFVGTMLSSNNNQALRLAMDYSKSAEASGKEPGDISSADIKAPKTLEDYRKGRQELAKSFYSASEDVSASSISGGASLKVKGKKGKEAQSAAREYLTSKEDDFNMAKANEIGNALSVYNANRPGNLAIPTQEYVDILRQDLQPTAVAQIRKQQLEEAEIIARITEKWDRKKAIAALVADKEVIMNEEFDNEAAQKEIDQIVSSASSGSNGANSGTNTP
>NZ_CP038863.1|WP_143725979.1|53193_53667_+|hypothetical-protein
MKKTISLIAILLLSSCVLNASEIKQDGITCSESIFMFRPVGFKKQEPRFKHFKRFDGNKTKDNMEMIGQIDKQIENIKQIKEEKSDLNPINKLTMPLSKICIEGQKFLLSEKGIVQVLNEKGKPAKCDCILQGTYSSYGENGEPDFQKKIYKYKEIK
>NZ_CP038863.1|WP_143725980.1|54139_55225_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPNTKEELQALVKDESIYLGDIDTSKITDMSELFKNSTRTDFSGIEKWNTSKVTNMAGMFWFCERFNQDLSSWDVSNVKNMAGMFTYCENFNQDISGWDVRNVKDMDSMFTYCSTFNQDISSWDTSNVENMKGMFKGCESFNQDLSSWDVSNVKNMAYMFLSCKTFNQDISSWDVSGVKDMSFMFSDCENFNQPLNDWNVSRVENMHHMFEDCHSFNQDLSSWDTSNIEDMSYMFSGCHSLNQDLSSWDVSRVKDMSHMFSDCRTFNQNISNWNTSKVESMACMFYDCTSFNQPLGDWDVSEVKYMAFMFSGCRNFNQDISNWDINNVNDTDMFENCPIDNLNMPSQEQSSVKRQRL
>NZ_CP038863.1|WP_143725981.1|55234_55804_+|BspA-family-leucine-rich-repeat-surface-protein
MAKFIPKTKEELQALVEDESIHLGDIDTSKITDMSCLFRNSTREDFSGIETWNTSNVKTMAGMFWGCESFNQDISGWDVLNVENMSYMFKDCESFNQNISKWYIFNVKDMDSMFAGCRTFNQPLGDWDVSEVEDMTAMFSGCRTFNQDISSWYVSNVEYKEDMFEKCPIDNSNKPSREHKIITIKRNRL
>NZ_CP038863.1|WP_143725982.1|55813_56887_+|BspA-family-leucine-rich-repeat-surface-protein
MAKFTPETKEELKTLVKGEAIHLGDIDTSKITDMSYLFFYSQRTDFSGIEKWDVSNVENMSFMFHNCESFNADISSWDVSKVKYMSYMFSYCKNFNQPLNGWDVSGVENMCAMFKDCTSFNQNLSSWDTSNIEDMSFMFYGCKNFNQDISGWNINKVWDTTDMFENCFIDSKNMFLSDRYIIALKNIYEKTKNEFSPINSQPDYQKLENLIEKFCEVYFSDKTKESEKYMLFQTFYSDIEDGRIEMLTKETGSFEKAIMLTAYDELKHYFIEDLDFPIDRYDFNVLSIDDNYKPKFDKIDISFCSEEDIFYIKKIMDGNEEKINHKAINFILQETGIAEQIENKFSILSKKSNKNIK
>NZ_CP038863.1|WP_143725983.1|56898_58518_+|hypothetical-protein
MKLYFENWDFKNDYSENELEKVNNIFEEIINKTLNKEEKEFYIDTISYLNYDISSLEKAMDKEYIDKYHNGAGYNFLNTFATHGFPYKKLLETHLDLLPHKVPYDEAEYEYGELFLKLNDRIISNFENKLESFYNKINNIPEVDEEALEDYIRSKFTGENDTAEAFEIVEQDNGKKYFMNGYFVNGYFNGGFFDYEIFLKKIDDINTIEKKWNFSSNVLDLENFYDLIDEIKTNFNNIYKEIIINNKQDVNYLDVLECVQDTIYNFEEYLSDKNLLEKVADDFLAMGTENNIEVNINEAIDKVIEIDFGDSEVKKWIKENYTSELLNDFREEQGVNSLSTKITLVDEALAGIFYCVEEKICELSSYIENYSKEEISISDLENKINNTSELIKKITLYIIEDNELENTDAIKEKIDDYINRGEISNYEAVEWLADNLQEYEDAYCGVYERKQTNLFDEIKQAQAQAIKSDIYDNFNKLCLASLLLDYKEKNNFEISENEYDRMIDFVENNSDFTESCSTMSEISEEYFSNKKNKQLKDRK
>NZ_CP038863.1|WP_143725984.1|58514_60212_+|hypothetical-protein
MIQNTEILKLVNPKKENVRNDKDIVSQIISCSIDGEEFVVETKYDVVREWNEKYIEPTANNDFEVIEIADYTGIINCLDEQILNDEIIKKEMQKSLSRGEKFDFNARLQKEIDKLLYTIQGIDFTKINLKQTEIDNLIHMFDEKDFHQITLSNLTNKAIKDALEVLYADDYKKFKDKEYELVIERNSEQSVMDLKLISNNEIIHSGLVSKEKWVDYHELAKLCNAVLKDLKLDDRLEIDFGDYQGGHCLTNRTFYDEEGYLADNDYEVIDNDLSTPEFSLETESNIDAVSLAYVDGRLYSSSFQEGEILKKEYKFFGVKTEDVIELINEEIQKAKEGEYDFVDCSALDSIDKEDSIQIELEYFWRSLNNGEHIINEKLEALKDKLTVCHRKGKDWYVVPKWTGQYFMRDEVAGYEVELMVQNKPTQEELQDIVKTLKDSRDAISEGYEFSIIQMLKDTGLEEVIIEKTKAMQDKFNTLDDIKLIENEVGDIIGHYSNSNDRKRINEAVLTYLEKQKENNIEPSESIKEVQEKLAEAKKENKLAEIADNINEILNTKEHNLKFKKK
>NZ_CP038863.1|WP_143725985.1|60354_61350_+|BspA-family-leucine-rich-repeat-surface-protein
MAKYTPNTKEELQALVKDESIHLGDIDTSKITDMSELFKNSTRTDFSGIEKWNTSKVTNMAGMFYNCYYFNQPLGDWDVGKVENMKEMFHGCLSFNQNISKWDVSSVGDMESMFYCCENFNQDLSSWDVSKVENMSWMFSYCTSFNQDISKWDVSNVKDMANMFAFNQPSKKEVSKGQHQEEGSNSWDVSESGINWEEIFSATVPLPKYYKQNLEKKDLGQKSFFEEYDIFKPKNELNEQFENYIEQIDQSKKQLKQEQNQNDIDINSLTLDDIQSKKEVSKGQHQEEGSNSWDVSESGINWEEIFSATVPLTDNSNIPSQEQSSIKRNKL
>NZ_CP038863.1|WP_143725986.1|61359_62259_+|BspA-family-leucine-rich-repeat-surface-protein
MAKFTPETKEELEALIYNEAIHLGDIDTSKITDMRELFAVAIYRKDFSGIETWDVSNVKDMASMFAACRNFNQDLSSWDVSKVENMACMFSGCENFNQDLSSWDTSKVKTMAYMFADCENFNQDISGWDVGKVRNMEYMFKDCTSFNQPLGGWDVSGVENMRGIFLCCESFNQDLSSWDVSKVKNMAYMFAGCESFNQDISGWDVSKVESVQAMFSGCHAFNQDLSSWDMSNVDENEYEVDEKIINKSVKKLYNKYIDDFSDTPMLNEHWLDELVEITDEIAEEQAEQKDKIKNKKGLK
>NZ_CP038863.1|WP_172612459.1|62255_63482_+|DUF285-domain-containing-protein
MSSRSVTNIIDISIDENYNKNISGNSFFSLYGQIGYNVLIGVKTLAGDEFWEKYPQYKNFVEKNFIEHSNTLNQVDYEGSADAIFYKKNNKIFACVKCGVEEDNSSISSSNIFFDEKFIKETSSINPLSQFEDIRLSREAVVPIDKYIEYKYTEKPNEINGLIREIVDNFVEFYKVEPIQPDFDFSKFDNVLNQILMPKYFPETKEELKALVEDESIYLGDIDTSKITDMSYLFENSTRTDFSGIEKWDVSSVRDMTGMFENCTSFNQDISGWDVSGVKDMSFMFLDCYAFNQDLSSWDVRNIEDMSCMFLGCKTFNQPLGDWDVSGVRNMSWMFENCTSFNQDISSWNVGRVVNMKSMFKGCHSFNQDLSSWDISNVKNMEDMFENCPIDNLNMPSQEQSSIKRQRL
>NZ_CP038863.1|WP_143725987.1|64925_65726_+|BspA-family-leucine-rich-repeat-surface-protein
MDDLERPADKWKLLQILKDNSFPLKNIDTSNITDMSELFQNSTRTDFSGIEKWDVSNVANMYAMFDNCKTFNQDISGWDVSKVTNMAGMFWGCKTFNQNISNWNTSNVENMASMFKYCENFNQDISAWDVSKVTNMAGMFWGCKTFNQNISNWNTSNVENMASMFKYCENFNQDISAWDVSKVRNMLFMFANCKSFNQDLSSWDVSSVKNMGAMFENCTSFNQDLKSWDTSNVENNFYMFHGCPINTNNETYIFNESNFIKKMKRN

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038863_1	1.1|3093|30|NZ_CP038863|CRISPRCasFinder	3093-3122	30	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	3093-3122	0	1.0
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	3158-3188	0	1.0
NZ_CP038863_1	1.3|3224|31|NZ_CP038863|CRISPRCasFinder	3224-3254	31	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	3224-3254	0	1.0
NZ_CP038863_2	2.1|5081|42|NZ_CP038863|CRISPRCasFinder	5081-5122	42	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	5081-5122	0	1.0
NZ_CP038863_2	2.2|5156|42|NZ_CP038863|CRISPRCasFinder	5156-5197	42	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	5156-5197	0	1.0
NZ_CP038863_3	3.1|18366|51|NZ_CP038863|CRISPRCasFinder	18366-18416	51	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	18366-18416	0	1.0
NZ_CP038863_4	4.1|52776|51|NZ_CP038863|CRISPRCasFinder	52776-52826	51	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	52776-52826	0	1.0
NZ_CP038863_2	2.2|5156|42|NZ_CP038863|CRISPRCasFinder	5156-5197	42	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	10253-10294	4	0.905
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	NC_010010	Bacillus megaterium QM B1551 plasmid pBM300, complete sequence	24151-24181	5	0.839
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	NZ_CP032536	Bacillus megaterium NCT-2 plasmid pNCT2_8, complete sequence	8974-9004	5	0.839
NZ_CP038863_1	1.1|3093|30|NZ_CP038863|CRISPRCasFinder	3093-3122	30	KX522565	Wolbachia phage WO, complete genome	44096-44125	7	0.767
NZ_CP038863_1	1.1|3093|30|NZ_CP038863|CRISPRCasFinder	3093-3122	30	HQ906662	Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1, complete sequence	38602-38631	7	0.767
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	AP014349	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C79, *** SEQUENCING IN PROGRESS ***	5447-5477	7	0.774
NZ_CP038863_1	1.1|3093|30|NZ_CP038863|CRISPRCasFinder	3093-3122	30	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	11349-11378	8	0.733
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	NZ_KR611317	Rickettsia endosymbiont of Ixodes pacificus strain Humboldt plasmid pREIP, complete sequence	6022-6052	8	0.742
NZ_CP038863_1	1.3|3224|31|NZ_CP038863|CRISPRCasFinder	3224-3254	31	KX160215	Lactococcus phage 98104, complete genome	32050-32080	8	0.742
NZ_CP038863_1	1.3|3224|31|NZ_CP038863|CRISPRCasFinder	3224-3254	31	KX160212	Lactococcus phage 98101, complete genome	31613-31643	8	0.742
NZ_CP038863_1	1.3|3224|31|NZ_CP038863|CRISPRCasFinder	3224-3254	31	KX160214	Lactococcus phage 98103, complete genome	32692-32722	8	0.742
NZ_CP038863_1	1.3|3224|31|NZ_CP038863|CRISPRCasFinder	3224-3254	31	KX160213	Lactococcus phage 98102, complete genome	31542-31572	8	0.742
NZ_CP038863_2	2.1|5081|42|NZ_CP038863|CRISPRCasFinder	5081-5122	42	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	18150-18191	8	0.81
NZ_CP038863_4	4.1|52776|51|NZ_CP038863|CRISPRCasFinder	52776-52826	51	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	70603-70653	8	0.843
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	164375-164405	9	0.71
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	114980-115010	9	0.71
NZ_CP038863_1	1.2|3158|31|NZ_CP038863|CRISPRCasFinder	3158-3188	31	MT773557	Myoviridae sp. isolate BML_S_1 genomic sequence	126226-126256	9	0.71

1. spacer 1.1|3093|30|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgattacaagatgcgaagaaaaagaattt	CRISPR spacer
ttgattacaagatgcgaagaaaaagaattt	Protospacer
******************************

2. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
gctttgtttttcaaacaaagaagaattattt	Protospacer
*******************************

3. spacer 1.3|3224|31|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acattatagaacttgtttatacaaaagattt	CRISPR spacer
acattatagaacttgtttatacaaaagattt	Protospacer
*******************************

4. spacer 2.1|5081|42|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

catatccaagtgggatacaagcaatgttgaaactatgaaggg	CRISPR spacer
catatccaagtgggatacaagcaatgttgaaactatgaaggg	Protospacer
******************************************

5. spacer 2.2|5156|42|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttaggtgattgggatgtttcaaaagtcacaaccatgtctta	CRISPR spacer
tttaggtgattgggatgtttcaaaagtcacaaccatgtctta	Protospacer
******************************************

6. spacer 3.1|18366|51|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

caaccaagaccttagctcttgggatgtatcaagtgttgtaaacatgaaagc	CRISPR spacer
caaccaagaccttagctcttgggatgtatcaagtgttgtaaacatgaaagc	Protospacer
***************************************************

7. spacer 4.1|52776|51|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aataccagcaaggttgagaatatggaagctatgtttgaaagttgtgaaaac	CRISPR spacer
aataccagcaaggttgagaatatggaagctatgtttgaaagttgtgaaaac	Protospacer
***************************************************

8. spacer 2.2|5156|42|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.905

tttaggtgattgggatgtttcaaaagtcacaaccatgtctta	CRISPR spacer
attaaatgattgggatgtttcaaaagtcacaaccatgtcttg	Protospacer
 ***..***********************************.

9. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to NC_010010 (Bacillus megaterium QM B1551 plasmid pBM300, complete sequence) position: , mismatch: 5, identity: 0.839

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
tcttcgtttttcaaacaaagaagagttctat	Protospacer
 ***.*******************.** * *

10. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to NZ_CP032536 (Bacillus megaterium NCT-2 plasmid pNCT2_8, complete sequence) position: , mismatch: 5, identity: 0.839

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
tcttcgtttttcaaacaaagaagagttctat	Protospacer
 ***.*******************.** * *

11. spacer 1.1|3093|30|NZ_CP038863|CRISPRCasFinder matches to KX522565 (Wolbachia phage WO, complete genome) position: , mismatch: 7, identity: 0.767

ttgattacaagatgcgaagaaaaagaattt	CRISPR spacer
ttgattacaagattagaagaaaagcaaaca	Protospacer
*************  ********. ** . 

12. spacer 1.1|3093|30|NZ_CP038863|CRISPRCasFinder matches to HQ906662 (Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgattacaagatgcgaagaaaaagaattt	CRISPR spacer
ttgattacaagattagaagaaaagcaaaca	Protospacer
*************  ********. ** . 

13. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to AP014349 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C79, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.774

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
caatctttttgaaaacaaagaagaattattt	Protospacer
   *. ****  *******************

14. spacer 1.1|3093|30|NZ_CP038863|CRISPRCasFinder matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ttgattacaagatgcgaagaaaaagaattt	CRISPR spacer
cgctatacaaaatgcaaagaaaaagaattg	Protospacer
.    *****.****.************* 

15. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to NZ_KR611317 (Rickettsia endosymbiont of Ixodes pacificus strain Humboldt plasmid pREIP, complete sequence) position: , mismatch: 8, identity: 0.742

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
tacctctttatcaaaaaaagaagaattatta	Protospacer
  ..* *** ***** ************** 

16. spacer 1.3|3224|31|NZ_CP038863|CRISPRCasFinder matches to KX160215 (Lactococcus phage 98104, complete genome) position: , mismatch: 8, identity: 0.742

acattatagaacttgtttatacaaaagattt	CRISPR spacer
caaaaaaagaacttgttttaacaaaagatta	Protospacer
  *  * ***********  ********** 

17. spacer 1.3|3224|31|NZ_CP038863|CRISPRCasFinder matches to KX160212 (Lactococcus phage 98101, complete genome) position: , mismatch: 8, identity: 0.742

acattatagaacttgtttatacaaaagattt	CRISPR spacer
caaaaaaagaacttgttttaacaaaagatta	Protospacer
  *  * ***********  ********** 

18. spacer 1.3|3224|31|NZ_CP038863|CRISPRCasFinder matches to KX160214 (Lactococcus phage 98103, complete genome) position: , mismatch: 8, identity: 0.742

acattatagaacttgtttatacaaaagattt	CRISPR spacer
caaaaaaagaacttgttttaacaaaagatta	Protospacer
  *  * ***********  ********** 

19. spacer 1.3|3224|31|NZ_CP038863|CRISPRCasFinder matches to KX160213 (Lactococcus phage 98102, complete genome) position: , mismatch: 8, identity: 0.742

acattatagaacttgtttatacaaaagattt	CRISPR spacer
caaaaaaagaacttgttttaacaaaagatta	Protospacer
  *  * ***********  ********** 

20. spacer 2.1|5081|42|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.81

--catatccaagtgggatacaagcaatgttgaaactatgaaggg	CRISPR spacer
attaaattc--ttggaatactagcaatgttgaaactatgaaggg	Protospacer
  .* **.*   ***.**** ***********************

21. spacer 4.1|52776|51|NZ_CP038863|CRISPRCasFinder matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.843

aataccagcaaggttgagaatatggaagctatgtttga-----aagttgtgaaaac	CRISPR spacer
aataccagcaaggttgagaatatggaagctatgtttcataatgcagttgag-----	Protospacer
************************************ *      ***** *     

22. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 9, identity: 0.71

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
cgtttgtttttcaaagaaagaacaaagaaaa	Protospacer
  ************* ****** **  *   

23. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 9, identity: 0.71

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
cgtttgtttttcaaagaaagaacaaagaaaa	Protospacer
  ************* ****** **  *   

24. spacer 1.2|3158|31|NZ_CP038863|CRISPRCasFinder matches to MT773557 (Myoviridae sp. isolate BML_S_1 genomic sequence) position: , mismatch: 9, identity: 0.71

gctttgtttttcaaacaaagaagaattattt	CRISPR spacer
ccagctattttcaaacatagaagaataattg	Protospacer
 *  .  ********** ******** *** 

3. NZ_CP038862

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038862_1

• CRISPR_ID: NZ_CP038862_1
• CRISPR_location: 1099991-1100160
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP038862_1

Consensus_repeat	Method
AAAATGTTTTAGCCTATTATTAATTGTTTATATGATAAAATAG	PILER-CR

spacers of NZ_CP038862_1

>1.1|1100034|23|NZ_CP038862|PILER-CR
CATTTTTTTGAATAAAGCCAAGC
>1.2|1100100|23|NZ_CP038862|PILER-CR
TAATTTTATAATGGAAGCTAGAG

CRISPR arrays and Neighbor proteins around NZ_CP038862_1

CRISPR arrays

The CRISPR arrays of NZ_CP038862_1

>merge|NZ_CP038862|1|1099991-1100160|PILER-CR
GTTTTAGCCTATTATTAATTGTTTATATGATAAAATGGCATTTTTTTGAATAAAGCCAAGCAAAATGTTTTAGCCTATTATTAATTGTTTGCATGATAAAATAGTAATTTTATAATGGAAGCTAGAGAATGTGTTTTAGCCTATTGTTAATTGTTTATATGGTAAAATAG

>NZ_CP038862|1|1|1099991-1100160|PILER-CR
GTTTTAGCCTATTATTAATTGTTTATATGATAAAATGGCATTT	TTTTGAATAAAGCCAAGCAAAAT
GTTTTAGCCTATTATTAATTGTTTGCATGATAAAATAGTAATT	TTATAATGGAAGCTAGAGAATGT
GTTTTAGCCTATTGTTAATTGTTTATATGGTAAAATAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038862.1|WP_002857878.1|1105728_1107129_+|potassium-transporter-TrkA	unknown	unknown	gnl|CDD|225935
NZ_CP038862.1|WP_002840884.1|1099318_1099807_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038862.1|WP_143725647.1|1107174_1108230_+|3-dehydroquinate-synthase	unknown	unknown	gnl|CDD|234565
NZ_CP038862.1|WP_143725646.1|1100915_1101854_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|274043
NZ_CP038862.1|WP_002860739.1|1103808_1104576_-|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl|CDD|223671
NZ_CP038862.1|WP_143725645.1|1100215_1100443_-|WGR-domain-containing-protein	unknown	unknown	gnl|CDD|153425
NZ_CP038862.1|WP_143725640.1|1093634_1094018_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038862.1|WP_057038275.1|1102269_1103469_-|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|271182
NZ_CP038862.1|WP_143725638.1|1092542_1092968_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038862.1|WP_002868669.1|1104577_1105699_-|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl|CDD|234642
NZ_CP038862.1|WP_143725648.1|1111050_1112661_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|223541
NZ_CP038862.1|WP_143725644.1|1098120_1098732_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038862.1|WP_143725642.1|1096508_1097675_+|toprim-domain-containing-protein	unknown	unknown	gnl|CDD|273595
NZ_CP038862.1|WP_143725927.1|1098762_1099170_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038862.1|WP_002870050.1|1109796_1111047_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl|CDD|273704
NZ_CP038862.1|WP_143725643.1|1097735_1098101_+|DUF2493-domain-containing-protein	unknown	unknown	gnl|CDD|378473
NZ_CP038862.1|WP_002802048.1|1094103_1094718_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP038862.1|WP_172612411.1|1094814_1096368_+|DUF4942-domain-containing-protein	unknown	unknown	gnl|CDD|372683
NZ_CP038862.1|WP_002779694.1|1100455_1100686_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP038862.1|WP_143725639.1|1093262_1093619_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP038862.1|WP_002857878.1|1105728_1107129_+|potassium-transporter-TrkA	gnl|CDD|225935	COG3400, COG3400, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP038862.1|WP_143725646.1|1100915_1101854_+|tyrosine-type-recombinase/integrase	gnl|CDD|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	6.63323e-26
NZ_CP038862.1|WP_002870050.1|1109796_1111047_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl|CDD|273704	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP038862.1|WP_143725645.1|1100215_1100443_-|WGR-domain-containing-protein	gnl|CDD|153425	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.	5.88524e-09
NZ_CP038862.1|WP_002868669.1|1104577_1105699_-|tRNA-guanosine(34)-transglycosylase-Tgt	gnl|CDD|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP038862.1|WP_143725648.1|1111050_1112661_+|AAA-family-ATPase	gnl|CDD|223541	COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].	4.02232e-166
NZ_CP038862.1|WP_002860739.1|1103808_1104576_-|magnesium-transporter-CorA-family-protein	gnl|CDD|223671	COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism].	9.80107e-32
NZ_CP038862.1|WP_057038275.1|1102269_1103469_-|tyrosine-type-recombinase/integrase	gnl|CDD|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.7135e-56
NZ_CP038862.1|WP_143725643.1|1097735_1098101_+|DUF2493-domain-containing-protein	gnl|CDD|378473	pfam10686, DUF2493, Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.	3.46333e-12
NZ_CP038862.1|WP_143725647.1|1107174_1108230_+|3-dehydroquinate-synthase	gnl|CDD|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	1.85638e-166
NZ_CP038862.1|WP_172612411.1|1094814_1096368_+|DUF4942-domain-containing-protein	gnl|CDD|372683	pfam13708, DUF4942, Domain of unknown function (DUF4942). The function of this family is not known.	1.93829e-13
NZ_CP038862.1|WP_143725642.1|1096508_1097675_+|toprim-domain-containing-protein	gnl|CDD|273595	TIGR01391, DNA_primase, DNA primase, catalytic core. Members of this family are DNA primase, a ubiquitous bacteria protein. Most members of this family contain nearly two hundred additional residues C-terminal to the region represented here, but conservation between species is poor and the C-terminal region was not included in the seed alignment. This protein contains a CHC2 zinc finger (pfam01807) and a Toprim domain (pfam01751). [DNA metabolism, DNA replication, recombination, and repair].	2.80036e-18

Protein sequences

>NZ_CP038862.1|WP_002840884.1|1099318_1099807_+|hypothetical-protein
MKDDKILLPQKSQFGDKFWLIRDNLAVCENGRIFNYDELGKLIETQYECILDNVSKASSKKILANIIDLKNIIIDDYFINLIEHTIDGNKFEFSHDMNLIKYKGYVANLNTLEIAGLPQEMEKVGDELILPDFPKRLDENLIREFQALIKLVFRKDCNKIKL
>NZ_CP038862.1|WP_143725927.1|1098762_1099170_+|hypothetical-protein
MRNYYISEGVKALFSVYFKDQTEENFIKALNEFNKENQINSQEIKDEALREIKEELSKLATTDLLNAKIDKVEAKIDKVDTRIDKVEASLNAKIDKVENKLDSFKTEVKTYVIILAALMFILQPTIFDLIKSIFK
>NZ_CP038862.1|WP_143725644.1|1098120_1098732_+|hypothetical-protein
MKNNEIFTKAFRFTDKGDLVITLTPDFECFLAENQIKNSQDFADKFSDTLDENRYFDIPRILCYKEDLKSTPFEDFDNEYFVFVLNGTNDLDSLSYAVSALNPSIQKDFLIEAMKTKIKEGEINKENLKENLENEIKYISEQIPIVFEGKVGEDTIEKLLKEKETIVLPNVTKYAKNSINEYFENEKDEMLEELNAICKKNMI
>NZ_CP038862.1|WP_143725643.1|1097735_1098101_+|DUF2493-domain-containing-protein
MKLLVCGGRDCKDVEHFNKEMSNIFSLYQNQIDTIIEGGARGADNMAKNYALKNKINLVEVKADWQHFGKAAGPIRNQRMLSMLDSNDCVLAFWNGVSKGTRNMIEIARNKNIKVIIINIK
>NZ_CP038862.1|WP_143725642.1|1096508_1097675_+|toprim-domain-containing-protein
MKYDIERLNNIPIMDVLESLGAISDKNKRIMHCFNITAHKNNDHNASLGIYESTNTCHCFACGIGGNPVNVVKTIFNGNFKEACEYLHSQFNIPFLNGIQVTYKKVFEKPKPKAKDYVFFEPNKKYVEVEKLAPFVKNYSTLTKAQKLKLVYTTIYRFSLSTEQKAKNLYYLKRGIKDLSLVEKIGFLNFNNIKELENLLKEYFPIEDLIEFKIFSKEKQAWKYAFNVALVPNFDLYSNMVVGFSLRVIDSTYNGAKEVNISCGNIVFAMPFGLENKLLKECEKIVITEGHIDCLSARNYYKQDSKTLFISFAGTFSFREEILTVFKDKRVMLCFDKDEAGINGEKSLSEKLSLLNIKNYSLTWDIADGKDLNDLLLADKMGSIKLIA
>NZ_CP038862.1|WP_172612411.1|1094814_1096368_+|DUF4942-domain-containing-protein
MLKSIKEVNQDFEWYPTTEEMVDSLINGIKDKYLKSVLDIGVGDGRVLDMLSNKLSTDRLYSIEKSDPLIQAMSGKILNIGRDFWETSLIEKQVELVFCNPPYSEYEDWMVRIIKEANFEILAFIIPMRWKENIFIQQAIQQRNLDYEIIDSFDFLNAERKARAKVDLIIFKPKVDHKDSFELFLEEQFGLKLPNDYFSKIETEEKEADELHLQCNIIKSEDFIDFLLKKYNEELKIYIDSIKSLGKVNGLVFEYLDISKKKVLKGLESRLKHIKAIYWNELFKKLSPISSKVTSKIRTGLSSSIITKAHIEFNRDNIESVLCWFTKNINEYTKLSYLNFFDSLSKENNAFLYKSNERFNYGNWRYRKEYDYTNEFKNIKLKLDYRIVVPYLAQADSWSYNERANEFMQDLKVIANNLGLSFSCEHNFKFNAGESNSFYLDNGIKFFEYKAYKNGNVHFKFSQDFMAKLNLAVGRLRNWLTKEEAKEEFKDVSEEIINEIFDKPLLLDFKNMKLLSF
>NZ_CP038862.1|WP_002802048.1|1094103_1094718_+|hypothetical-protein
MGITVNIWKEIPELKNLKKYLSEKEILGLDSYEKCAFGSQEYVDRLVRDEKIYYLNTNLENRNFILKQALKLEKNEIKTFLHSDNFITFAKDMILFSIRKYFDKTGAGHYKFYEKLGMYYRDYGFDSTQDRVKLFLTALERGSVPYVCFYKDYLELQSIRNKDMILFVSKNENFSRNNKLPTESIQKLKKELLEYIKANNLTIE
>NZ_CP038862.1|WP_143725640.1|1093634_1094018_+|hypothetical-protein
MEKNYEDFKEALLKGNLALVLTSVSKSGMTHTFKVFYKNKKEQYFPIPDEIAKAVSDRKVDEKGIAIRGYGMDMSFALWLNIARYLKCYNEAYRNYSSYKPNRGNFNPFYPNMETFINEITKNQSID
>NZ_CP038862.1|WP_143725639.1|1093262_1093619_+|hypothetical-protein
MNVLLRNDIDDLNLKEYKKFLECKKAFHLRGMNKNQEIFVKRMTKGEKIIARIFSVIDVKEKIKIEILKIFNKEKGIKEEILFEESFFTNYHETQFHDFHGFRIYRIIKLFLRDYLKL
>NZ_CP038862.1|WP_143725638.1|1092542_1092968_+|hypothetical-protein
MLTYTNELVVTKLARALAYKEAKKDKSKVDFLINLFKKQIRNCIKATEHFTDRVSQRFEEVENDTLSVAISRAIRNTSPLQRGADYHIATTQKYFDEDSNIVVVLERQGEFGAVLVTTYKRGQEKLLSDEELADLKKRGVL
>NZ_CP038862.1|WP_143725645.1|1100215_1100443_-|WGR-domain-containing-protein
MNNVLLHRITEKGNIRYYSIEIIATLFEEYMVERVYGNVRFKSCTGIKNNVFPSFNEAQIFFERLKKQKMKKGYA
>NZ_CP038862.1|WP_002779694.1|1100455_1100686_-|hypothetical-protein
MEKNTINNENIQKNEILIPKRVLFDEKTLKMIEMMIPTYKDEISNTNKENEKINQMIKLAIEKMFKNDFLNKINNF
>NZ_CP038862.1|WP_143725646.1|1100915_1101854_+|tyrosine-type-recombinase/integrase
MKLKNTTISEDLERWIEAYLKHIQALSYSNNTFLLYRRILLEFVEYSLDYQDEMQINDIKTTFLVNFLNYLENNSKNGNKLSKKTKITYLRVLTSFFSFISDNNDDLFIFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKEKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKAALLNN
>NZ_CP038862.1|WP_057038275.1|1102269_1103469_-|tyrosine-type-recombinase/integrase
MVIVNDKQLKNLIVEKRTYIKDVYTKNLYIEAKGSLKGTIIFFYFRYRLNKKIQSIKIGKYPTTTLSSAREKANIFNNMLAEKIDPKEQIQKEDIQKSKTLKEVFKEWVENFYKEKSNYNTPHRVDIHIISKLGDKDITTLTRQDIIAIYDKLKAEGKLETIKRISQAFKRIILYAINKEYIENSNILTLDMKALYGSPKKQNLRAITKEERFKELLLAIENYNGSIFTKVALQISPYLFLRSANIRNLEWSEIDFKNLKIIIPANKMKGGEDFIVPLSESVIKLFEFIKPFSFHNSKYVFPSDISKSKTMSENTLNQAIKRLGFGDEMVFHGFRTTASTLLYEFKNLHGQDSEVIELCLDHRERNNVKATYNRSLRLNDRKLLMQYWSDYIDKLKGII
>NZ_CP038862.1|WP_002860739.1|1103808_1104576_-|magnesium-transporter-CorA-family-protein
MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFNDEKIYKLQNEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFYKKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILNKNTKEHLTRIDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLYIFSLICCILIVGFIFYHSKKTKEFDLDEGKKAKKQTK
>NZ_CP038862.1|WP_002868669.1|1104577_1105699_-|tRNA-guanosine(34)-transglycosylase-Tgt
MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDANDMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKNSKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISVDRTILWAKEAITYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAIGGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTRNARNGTFFTSFGKFNIKKAEFINDHEVIDPTCSCYTCRNFSRGYLNHLFKAKELTFFRLASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK
>NZ_CP038862.1|WP_002857878.1|1105728_1107129_+|potassium-transporter-TrkA
MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNISSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIMDFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFAYRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKAGQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYEKLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIMKVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEEYFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNRHYYKMRQNYQLFIPVE
>NZ_CP038862.1|WP_143725647.1|1107174_1108230_+|3-dehydroquinate-synthase
MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTLLSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGFAASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLKTLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELKSRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLELLDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLIKGDISKEDIIATLREFQ
>NZ_CP038862.1|WP_002870050.1|1109796_1111047_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVNSCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRLGSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIASKGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIVEKNNYKFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKDITKEWIFISEYEVQEKSNFANLKG
>NZ_CP038862.1|WP_143725648.1|1111050_1112661_+|AAA-family-ATPase
MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLIQKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLAKVPVEVKKDNTLWVFFILLVFIIALFISLGYFARKKELAKYPISNKNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKDKNNNVNLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKKKILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRIKVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLEEPNLNEQKKEMDEFLNSMKDKILKLSELLLEKEKIEHNDVKNIMQV

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	10490-10512	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	21901-21923	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	79113-79135	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	13471-13493	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	81774-81796	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP017877	Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence	3810-3832	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	46943-46965	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	36515-36537	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	12079-12101	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	7051-7073	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	7054-7076	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_MK541987	Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence	30647-30669	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	15431-15453	0	1.0
NZ_CP038862_1	1.2|1100100|23|NZ_CP038862|PILER-CR	1100100-1100122	23	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	39216-39238	0	1.0

1. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

2. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

3. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

4. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

5. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

6. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP017877 (Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

7. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

8. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

9. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

10. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

11. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

12. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_MK541987 (Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

13. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

14. spacer 1.2|1100100|23|NZ_CP038862|PILER-CR matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 0, identity: 1.0

taattttataatggaagctagag	CRISPR spacer
taattttataatggaagctagag	Protospacer
***********************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	102497 : 115380	15	Synechococcus_phage(25.0%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP038862|102497:115380|DBSCAN-SWA
GTCATTTTTTAATCCTTTCATACTCATCAGGCATTCCGCAAAATATAATTTCATCTAATAAAATTTTATGATATTTTATAAGCAAGCCTTTTTTTATAAGATAATTATACATAGGAGCTATATACAATTCTCCTTTGGTAAAATAATTTTCAGCTTTCATTCTATCAAAAATTTCTTTAAAATCTTTTGTTTTTTTAAAATAATAAAGTCCACTACTACAAAGATTTGAAATTCTTTCTTTTTCTGTAGTTTTAATCACATTGTCATTTTCATCAACTAAAACAAAACTCCATTGTTCCCCATCTGCCTCAAATACCTCTAAATAGCCATCAATTTTACAAAAATCTAGAGTAGTAGGTAAAGAAAAATTTGGCCTAAAGGTATCGATGTTAAAAATTAAAATACTCTCATCATCTTTAATATTTGCCCTTTCTAATCCAAGTCTTACTGTATGAGCTTGACCTAAAGTTTCTTGTTCTAATCTTATACTTTCGTAAGATTTTATTCCTAGTTTTTCACATTCTTCTTTTATAAAATTGCTAGTATTCTCAATATCTCTATATATAAAAATAAATTTAAAATCTTTAAAATATTTTTTAAAACTATTTACAGCATGAAAAAATACGCTATTTCCTTTTAAATCAAGCATATATTTAGGTTTATCATAACCCGCGTTTGCAAAACGACTACTTAGTCCTGCCATAGGAAAGATTATAATCATTTGCTCTCCTTAAAAAAATTTATCATAAAGTATAAAAGCATTTACCAAAAAAGCCATTTGTTTTTCTTTAAAATCATTATGTAAAGGCAACATAGATAAAAACAAATGCAAAGTCAAAGCTTTAATATTATCATCTATATTAAATATATTTAAAAATTCTTTTTGAATATCCAAAATATTTACATCCTCTTCTATAAAAAACTCTATATTATCGCTATTAACTTTACACTCAAAAAATCCTGCAGTAATAAAATCATAAAGCCCAAAAACAGAATGAACCAATTTTGCAAAATCATATTTTTTATCTCCATAAGGAGTAATTTTTCCATTAAAATCAAACCCTCTTGGATCAAAGGTTTTTATAGTGCCAGCTCTAAAATCATACATAATATTTGAAAAACAAAAATCTCCATGTATTAATGAAAATTCATTTATATCGTTCATATAAAAATCTAGCTTATCTACTAAAGTCAAAATACTTGGATAAGATTTTGAATTGATAACAATATTTTTGTGCAAATTAATTCCGCTTTGTTTACTAAATTCTTGCAATCTTTTTAAAGTTTTTTCCCTACAATTAAAATTTATATCTTTATCATTGCTTTTAAAAGAATGCAACTTATCTAAAAATTCTTTTAAAGATTTAAATATTCTTTTCCAAACATAACTAGGTAATTTTCCAAAAACATATAATTCTGCTAAAGTATTATTGCAAAGATATTCTATTTCATAACTATCCTCATAAGTTATAACTTTAGGAGTATAGATAAATAGTTCTTTAGGCAAATTATCAAACCAATTAATCTCTGCTTTTATTTTTTCTTGCCAAGAAGAAGACTTTTTTATATAGCCATTTGAAATATCTATATTGTTAAAATTTCTTTGCGTGCTTACAGCTTTTTTGGAGTGAAAATAACTTGTTATAAGACCAAAATCAAGCCAAGTATCATTTTTTATAATATCAAAAGCATAAGCTTTAGAATAAGATTTCATGCCATCCACAAAAGAATAACTACTTTCAACTATACATTTTATCAAAAACTGAGGATGAGAAAAACTATAAGCTCCTGCTAAAATCAAATCATCTTCTAATGTTTTTGACAGTATATTAAATTCATCATTCAAATAAGCCCAATCATAATTTTCCTTAACTTTTGCAACCTGTAAAGAGTTTTCTTTAAATACAAGTTCTTTGAAAAAAGCATCCCCGTGTAAAATATAAAGTTTTTCATCAAAAGCACAACAAACATTTAAACAATAAACCACAGATTCACCTAAAGATAAATTATTTGGCACAAATAAAATTTCAATATTAAGTTCTTTTAACTTTTTCTCATCAAATTTGCTTAACTTAAAATCACTGGGTAAAGATAAAAAAATTTTTTGATTAAAATTTTTAAAAAGCTCTATTTGATATTCATACAATCTTTTATTACCAAGCGGTAGAAAAGATGGAGGAATTTTGCCAAATTCTAAAGTAAAATCAGAAGATGAATATTTTGCAGAAGTTATGAGTATCATTTATTGCCACCATCTTTATGAGGATTTTCTTTTTTTAAAAGTTCTTTAATTTGCTCATAATTTAAACTTGTAAATTCAGACGGACGAATAGCTTTATCATCAACATAAAATCCATCATACCCACACCAAGGTTTACCTATGATTATCTCATCATACGGTACATCATATTTTTTAAGCCAAGTGATAATTGTAGGCAAAGTATGAGTTTTAATTTTTTCAAGCTCACCATCAAACGTACGCATGTTGCGACTTGTGAAAATATTGATTTTAAAACCTTGTTTTTTATACTCTTTTAAAGTTTGAATTAAATCAAGATTTGGTTTTTTATCAATATAATCTACATTCTCTTCATCAATTGTCAAAGTTCCATCTAAATCAATAAGTAGAGTTTTCATATTCCCATAATCATAAAAATTTTAAAATATTTTTATGATTATATGCAATAAACCTTACAATTTATTTATTGCTTTAAAAATTTCTAAATCCTCAGGTATTCCAATGCCATGCATTTTGGAAAAATCAATATTATAAATACCTATTTTAGCACCGCTTTTTATAGCATAATTATAAACAGGACAAGTATAAAATTCATTATTAACTCTATCATTTTCTATAATCATATCTATAGCACTTTCAACAAATATTTTTCCTTTATTAAAAAAATAAATCCCAACTGTAGCAAATTCACTAATAGCTTCTTTTTCTTTTACTTCTACTACCAAATCATTATTTAATTTTGCAAATGACCATTTTGGGTTTTTTTCTTTATCAATAAAAGTCAATATCGAACCATCTAAACCTCGTTTGAAACTATCATTAATAAAATCAGCTATATCAACATCAACAATCTGATCAGAATTTGCTATCATCAATGGCGTATCATTATTAATATATTTTCTTGCATAAAGCACGGTACAAGCTGTTCCTTCTGTAAGTTTATCGATAGCTATAAATTCAACATTAAAATTATTTTTAATTTTATCAACTAACTTTTTTTCTTTAGTCAAATGTTCTTTTCTTGCTATTAAAATATATCTTGCACCTTTATATTTTAAATTTTCAAGCACTCTAACTATCATTGGCTTATCTAAAACATCGATAAAAGGCTTTGGTTTATCAAAACCAGCCTTTACAAAACGACTTCCAAGCCCAGCCATAGGAATCACTATATTCATTGACATTCTCCTAAATATTTATCATTATTAGCTCCTGGAAGTTTTACGACGACATTCGTTGCGTCTTCCAAAGCTTCAAAATCTGTAGCTTCACCTGGATAAATCATCACTATATCGCCTTTAGAATATATCCTATCATTCATCCTTACTTTGCCACTAATAATAACAGTAATTTCAGTTGCAATTTTATGATGATGTTTTTCTTCGGTATCACCTTTTTTATATTCTTTCACGCCAACTTCCACATTATTAGTTTTAAAAACACTTGGATCGAAATTTCCCACAAACCAACCACGAATCATTTCATCTAATTTATAATTTTTCACAATCAACCTTTCGAAATATCCAAATAAGCACGTAGTTCAACAATTTTTTCATTATGTCATTCTATAATATCCACACCTTCAAGTCTGGTCTCATCAAGTATTAAAATAAATTCTATAAAAGTTGTATTTTTATCTTGAAAAATATTTTTAGCACTAAAGCTTAGTTCTTTGCAACTTTTGAAAATATTTTCAATAGCTTTTAAACATTCTTCTTTGCCTTCTATTCTTTTTACAACTGGATCTTCTAAAACAAAATTCTCATTTAACAAGTTTGCTACTTCTTTTATATCTTTTTTATTAAAAGCATTAATATATTTTTCAGTTAATTTTTTAAGCATTTTTAATCCTTTCATATTCATTAATTTTAGCATGAGAATAAAAAGTAAAATAACGATTTTTATCAATTGATATATTTATAATTTTCTTGTCTTGTAAAATTAATTCATTTAATATTGGGGCGATAAAATATTTTCCTTCATAATTAACATCTTTTTTAATCATATCAAAGGCTGATGTTATGAAAAATTTAGCCTTATTAAAATAATAAAATCCCGCTATTGCATTTTTACTTACAGGTTTTTTTTCAAAAGCTTCTAAAACAAAATTATTTTCATCACATTTTACATAAGCCCATCTTGGATGAACACTCTCAAAGCTTAAAACACCTGCATCATTTGAAGATAAATCTGAAATAACTTCATTTAAATCACATTCAAAAATTTGATCCATATTGACAATAAGCAAAGAATCATTTAAATTAATCTCATCAATAGCCATCAAAACAGAACAAACCATGCCTTGTGTTTCATGTTTGAGAATAATAATTTTGCTTTGATTATTAGTTAAAACATTAATTGCATCATCTAAATGATAACGTTTTACGTCTTCTTCTTTAAGTATAAAAATAAAACGTTTACTCTTGACATTTTCATAATTTTTAACAAAATGCTCCAGCATAGTTTTTCCGCAAATTTCAATAAATGGCTTTGGAAAACCATCTTTTTCATCATCAAAAAAATAACTTTTACCCGCAATAGGAACCACTATATTTAACATTTCAATTCCTTTTCAAATTTAAAAATATGATTTTTAATATTTTCATAATTTACTTCACTAACTTCATCTACAATCATTACATTAGCTCCGCTTGCCTTAGCTGCTTTTATACCATTTTCATTATCTTCCACTATCATGCATTCTTTAGGATTTAATTTTAATCTTTCTATGGCTTTGATATACATTTCAGGGTCAGGTTTTCCTTTTTTTACATCCTCATTGGAAATATAAAAATCTAAATAATTTTCAAGAGCTGATTTTTTCATCATTACTTCAATGCTATTGCGTATAGAATTAGAACAAACTGCCATTTTATAACCTTCAAATTTTAGCTTTGATAAAGCATATTCATGATGGAACCTAGGTTTGCATAAACTATAAACTATTTCCATGGTGTATTGCTGTTTTAATTCATTTATAAAAGAATGTAGCGATTTAGGCAACCCTCTTTCCAATGAAAGCATTTTTAATTTATCCTTAGTTGGCAAGCCATCAAAAGTTGTTAAGTGCTCATATCTAGTAATTTCCATGCCAAAAAGTTTTAAAGCTCTATTTAAAGCTTCATAATGCCAATCTTTAGCTTCAATCAAAACTCCATCCATATCGAAAATAATGGCTTTTATCTTAGTCATTAAAGAATCTCCTTGCCTCATCAGGATAATCAGTGCAAATCATTAATTGTTCTTGTATATGTAACTCTTTTTCTATTTGTTTGTATTCTTGCCATTCTTTCTTATAATCTCTTTTATGAAGCTCTGGAGAAACTATACCAACTGATTTGCCGTTATCAATATGCTTTTTTATGGTATTTTTATCTATCCAATGTGAATAAAACTCATCCATCCAAATACCACAAGCTTTATCATAAAAACTAGGCTCTTTTTCATATTCACTTTGTCTAGTAAAGACATTAAAATTCAAATCAATATAAAGTAAAGCATCAGGAACCGACATATCAAATACAAAATAATTTGTAATTTTATATTTTTGAATAAGTTTCTTAAGTGGAATTTGAAGACCATCGGCCTTTATATTTAAAGCTAAAGGCAAATTTGTGTTATATTTTTTATAAAGCTTAAAAAAATCTTCTAATTTTAAACAATTTTCATCTGCCATATCATGCGATATGATTACACTCCCCCCCCCATATCTCTTAAATCTGTTTCAAGACCGTATGAATTAAGAAAACTTCGATCAAAAGCAGTAATAGAATTTTTTTCCTGCTTGTTTTTCCAATAACCACGATGCGAAAGTATTTTCATTAGCTTAATCTCACTTTGAAATAAATTTTCCAATAACAATATATTAACATAATTTAGTATAATAAAATATTTAAAAAAATTATTAAGAAAGGAAAATTATGCATTGTCCATTATGTCAAAGTGAAAATGATCAAAAAGAACTTTTTAAGACTTTAAATGCTTTTACTTCTTCAGGAAAACTTGATAAAAACTCGACCCAAATAAAAACAACTATAACAACTAATGATGACGGGGGGGGGTATTGTAAAGGTAACAACACTATAACTTTTACACAATGTCAAGATTGTGGATACATCTATAACTCGACGTTTAATTTAAATAAAATCTCTAAAGAATACCAAAGTGAAGGCTATTTTTCCCGCAAAATAGTCTCAAAAGCCATGAGCAATAATATAAAAACAATTAAAGATAAATGTCTAAAATATATAAACAAAAATTGTACTTGCTTGGAAGTTGCTCCAGGAAGTGGAGATATGATAAATGCTCTTATACGTAATGTAAAATTTATGTATACCGTTGATCCATCTTTAGTTTCTTTAGAAATGGAAAATATAAATAACCTTAAACATATACACGGATTTTTTAATTATAACATTTTGAAAAATAAACTAGAATATAAAATTAATTTCATTATGTTTAGACATCTACTAGAACATATTAGTACACCTCTAGGCTTTTTAAAAGATGTAGTTAAATTACTTGAAAACAACGGTATTATATACATAGAAGTTCCGAATATTGAAGAATTTATTGAATATAGAAGATTTTATGAAATTTTTAATGATCACTGCGGATATTATCAAAAAAATGTTTTAATTAACACTTTGCAATCTTTAGGTTGTGAATTTATAGATGAAATTTTTCTTTATAGAGAACAACATATGGGATTATTTTTTAGAAAAAATACAAATATATGCAACATAAATAAGTTGAATTTTAAACTTTTTGATAAAAACATTTACACCTTATTTCAAGAAAATATAAGAAAATTAAATAATCTTTTGCATGATTATAAAAATATCGCAATTTATGGATCTGGAGCCCATGGAAATACTATTATAACCTTTATTGATAACCCAGAAAAAATCAAAAAATGCTTCGATCTTGACGTAAGAAAACAAGGAATGTATTTGCAAAATTCTTCAATTATCATTCAAGAACCAAATATAGAAAATTTTAAAGACCTTGAAGTTATTATCATAGCAGCGCCTTTATATGAAGAAGAAATTATAAGATCTTTAAGAGAAAAAGGATATAAAGGGGATATTATCACTACAGAAAAAGAGTTAAAAAAATAATATAGAATCATATCTGAGAATTATAAAAAAACCTATAATCCTCAGGCACACCAATATCTATAAAATAATCATCAAAAATACAAGCTCTAGCCTTTAGTTTTTTATAGTTTTCTTGTAAAAACTCTTCAAAAGAAAATTTTTTTTCTAAATTAAATTCATTAAAAATATCTTTAGTTAAAAGATAAATTCCACCATTGATTAAACCTTGCTTTTTAAATATTTTCTCCTCAAAAGAAAGCACAAAGCCTTGCTTATTAATATTTACCGTGCCGTATCTATCAAAATCGTTCATTTGTTTTAAGGCTAAACAAATTTTATTTTCATTTATCTTTAATTTACTTAAATCTACATCAAAAAAAGTATCGCCGTTTAAAACATAAGCTTCATTTTTTATAAATTTCAAAGCCTCTTTTATAGCTCCACCTGTTCCTAGAGGCTCTTTTTCGATGCTGTATTTTATTTTTATACCTAAAAACTCATCTTTAAAATACTCTTTTATCACTTCATATTTGTATGATACTGCTAAGATAACTTCTTTTATGCCTTGCTTTTTAAGATACTCAAAAATAAATTCTAAAAAAGGCTTATCATTTATCGGTGCCATAGGCTTTGGAATGTCTTTTATAACACTTTTAAGCCTTGTTCCTAAGCCACCGCAAAGTATTATTGCTTGCAAGAAAAACCTTTGCCAAAAAGCTCTTCTTCAACGATAGCACAAATAATATGCCCTATTAAAATATGCACTTCTTGAATTCTTGGAGTGCAAGTTGAAGGCACTTTTATACAATAATCACAAAGCTCATTCATAGCCCCGCCATTAGCTCCGCTTAAGCCTATGCTTATGATTTCTTTTTGTTTGCAAAGTTCTAAAGCTTTTAAGATATTTTTACTATTTCCACTTGTTGAAATGCCTATAAAAACATCTCCCTTAAATCCTTGAGCTTGCACTTGTCTAGCAAACAAATTTTCATAACCATAATCATTCCCGATAGCTGTTAATACGCTAGTATCTGTCGTAAGTGCAATGCTTGCAATACCAGGTCTATCAAAATAAAACCTACTTACAAATTCCCCTGCGATGTGCTGTGCATCAGCTGCACTACCACCATTTCCCGCAAGCAAAGTTTTGTTACCATTTTTATAAGCTTTTATGACTTCTAATGAAGCATTTTTAATAAGAGTTATTAAATTCTCATCTTTTAAAATTTGCTCTTTTACTAAAATTGATTCTTGAAAATGTTCTTTTATATAGGAATTTAAATTCTCCATGATTTAACCCCCTCTTTTGTAAATGAAAAATCTTGCACATAACCTTGCTCTTTACTTAAAGCTTTGATTAGGTTGTATTTTTTAGTAGGATCTATAAAGAAAAACATAAATCCACCAGCTCCTGCTCCACTAGTTTTGCCACTATAAGCTCCATTTTGCATAGCTAAATAATAAATTCTTTCAAGTTCGTCATTACTAACAATTTCAGAAATGATTTTTTTTGACTGCCAAGATTTTCCTAAAATTTGTGCCAAAGTATCAAAATCCGCCTTAAACAAAGCTTCTTTCATCTTAATGGCATCTTGTTTTATAGCGTGCATAGCTTCAAGGGATTTTTCATCTCCAAGTTTTCCTTTTTTATGTTCTTCTATATCTTTTGCTTCTCTTGTAATATTTGTAAAATAAAGCACAGTTCTAGCTTCAAGCTCACTAGCTATCCAGTTTTTAATACGCAAAGGATTAACAATGACTCTTTTATTATCATAAAATTCCATAAAATTAAAGCCACCAAAAGTTGCGGCGTATTGATCTTGTGCTCCACCTACTATGCCCAAATCTTCTCTTTCTATCTCATAAGCAAGTTTAGCGATTTCATATTCCCCTAAAGGTAAATTAAGCCATTCTGCAAAAGCCTTTATAACCCCTACAACTAAGGTTGAGCTTCCACCTAGCCCACTACCACTTGGTACATCTGAATAAGTGTGCAAAGAAAAACTTAAAGGTTTTTTTGTAAAATCTTTTACAATACGATTATAAATACTTTTAAAAATATCTAATTTTCCATCATTTTCTAAGAATTCTTTGCTTTCGTACTCACAATGAGAATTTGTATCAGGTGAATCAAAAATGATTTTTCTATCTTCTCTTTCAATCAAAGTGCAATGTATGTATAAAGATATAGTCGCATTTAAAACATAACCTGTGTATTTATTACAATATAAATTTATATCAGTTCCACCGCCTGCTAAACCAAGGCGGAGAGGAGTTTGCGTGCGTATAGTTTTCATCGAATTACTACTTATTTTGCTATAATTTATTATAATAATTATAGCAAAATATACTTAACTTCTATATAATATTATTTAAACATTTGCAAAGCGATTAACTTTCATCATTTTAAACGCTCTTAAAAGTTCTTCAATACCATCTTCTAAAGTATTATCTGGTTTCCAACCTGTAGCCTCTAATTTAGCATTTGAAACCAAATAATCTCTTTTATCCGGATCTTCGCCTATGCTGGCTGAATGGATATAAAAATCAGGAATATACTTTTTAATCGTTTCAGCAAGCTGTCTTTTAGTCAAATTTGCAGAACTTAATCCCATATTATAAGCCTGACCCTTCATCTTATCATAATTCTCAATTCCATGGATAAATCCTTTAACTACATCGCGAACATGAATATAATTGCGTCTAAAATGCTCTTCAAAAAGCACTATAAATTTATCTTTATATGCACGATAGGTAAAATCATTAACAAGTAAATCAAGTCTCATTCTAGGTGAAATTCCAAAAACAGTAGCCAAACGAAAAGTTACACAATTTCCTTTATCAAGCAAATATTGCTCCGCGTGCACTTTATCGATCCCATATTCTGAGATAGGACGCAAGGGAGATTCTTCAGTGCACATTGCATCTTTTTCTCCTATACCATAACCGCTATTTGTATTGGGATAAATAAATATTTGAGAAGGACTTGCAAAATCACTTATCATTTTTACGGCTTCATAATTGATCATTTTGGCTAATTTTGAATTTCTTTTACAAAGTGGGGCTCCAACTAAAGCAGCTAAAGGAATAATAATATCAGCTTTTGCTACCTCTTGTCTAATAAGATTTTCATCCATAGCATCACCATTTATAAAAGTAAAATTTTTATTATGAGAACAAGATAAAAGAGAGATTTGATCAAACATTAAATTATCAATCACACAAACTTCATAACCTTTTTCAAGTAAAATCGGTGTTAAAACCGAACCTATATAACCTGCACCACCTGTAATTAAAACTTTTTTTGACATATTTTTCCTTATTGCAATAACTTAATTCAATACAGAATTTAATAATTCTATTTGACTTTTAATATCCATTTGATGATTTCCAACAAAAAATCCTTTATTATGCAAATAACTAGCATTTTTCAATTCTCCATGAATTTCATAATCAAAATATTTAATAACCTCATTATTGACAAAATTTCCAGCATTAATTGGTCTATATTCAATAAAATTGTTTTCTAATTTTTTTAAAATATCATATCTACAAAGTTTAGATTCTGGTTTTATAATTAAAGAAAAACCAAACCAAGAACTAACTCCGATTTCTTTTTGTACAATGAAATCTGGATGATTTTTAAAGTAATCACAAAATAATTTTGCATTTTCTCGACGATATTTTAAAAATATAGGCAATTTCTTAAGTTGTTCTATGCCTATAGCTCCACTCATTTCCACAGGACGTACATTATATCCTGGTAATACAAAACGAAATGATTCGCTAAACCAATCATCACTTTTATTTGCTACTAAATTTTCCTTTGGTAAATTTCTAGTCCAACCATGAGCTCTTAAACAAAGAAGTATATGATACAACTCTTCATCATCTGTAACTACAAAACCACCCTCCATTGTAGCCATATGATGAGAAAAAAAAGTTGAAAAAGTTCCCATTATGCCAAAAGTTCCTGCTTGTTTTCCTTTGTATTCTGCACCCATTGACTCACAGTTATCTTCAAATAAGACAATATCTTTATCTTTTATCATATCTTTTATTGCATCAAAATCATTAGGATTTCCCAATAAATTTACAATCATGATCATTTTTGTTTTATCGCTAATAGCGCTATTCAAAGCATTTAAATCATAATTTAATGTTTCTAAATCTATATCTACAAATTTTAATTTTAAACCATATTGGTAAAGTGGGTAATAAGTAGTACTCCATGATACAGCCGGAACTATAACCTCATCTCCTTTTTTTAATTTAGGATTTTTAGTATAAAATAATGCTGCAGTTGCTATCAAATTCGCAGCAGATCCAGAACTCGTCATAACAGCATATTTAGAACCTACAAATTTAACAAAATCTTTTTCAAATTCTGCAACTTTTTTGCCCATAGTAAACATATCGCTTTTAATAACATCTTGTATTGCTTGCAATTCTTTTTCATCCCAAGTAGATGAAGCTAGTGTATATTTATATTTCATTTATTCTCCTTTGTTATTTAAATACCAATTATACATCATTTTAATGCCATTTTCAAGTTCTATTTTATGCCTCCATCCTAAAGCATGAATTTTAGAGCAATCCATCAAACGATTCATGGTACTATCAGGTTTTTGAGAATTAAAAATTAATTCCCCTTTAAATCCAACAATTTGCTTAACCACTTGAGCAACTTCTGCTATACTATAATCAATGCCTGTTCCAATGTTAATATGTGTATTTTTTATTTTTTCATTTTTTTTATATAAATCAGAAAAATTTATATTTTTCATAACATAAATAGCAGCATCAGCCAAATCATCGCTATGTATAAATTCTCTCCTAACTTTTCCTGTTCCCCAAATTTCCACATAGTCTTTTAAAATTCCAAAATCAGCTAAATATTTCTTTGCTTCAACAAGTGATTTCATTTTTAAATCTTTTAAAATTTCTTCCTCTCTTTCCTCTTCCAATAATTTAGCTAAATGAAACTTCCTAAGTAATGCTGGTAATACTCGAGATTTCCCAAAATCAAAATTTGCTCTTGTTCCATATAAATTATTTAAAGCTAAAGTTATAAAGTTAGTTCCATATTGAATATTATATGATTCACACATCAATGCACCTGATATTTTCGCAACACCAAAAGAGGTTACATTATGTTCTAATATACCAGTCAACATACTCTCTTCTTTGATAGGATTAACAGTTTTTTCAGGATACATATAACCTGAACCAAAAAAAATTAATTTTTTTACTCCGAATTTGAAAGATTGATGAATGATATTATTTTGTATAGTTGTATTTTCATATATAAAATCTGCTCTTTGAGATACATTGGCGGCACCACATGGCAAAACTGCTGTTAAAAAAACATACTCTGGTTGTTCATTTTTAAAAAAATCAACCACCGCTTGTTGGTTTAGTAAATCAAGCTCTTGTCGTGTTTTAAAAATTAAATTTTTATACCCTCTTTTACTTAAGTTTTCTACCAATGAAGTGCCAGCTGTACCTTTATGTCCTGCTATATAAATTTTAGAATCTTTATTCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP038862|102497:115380|113166_114330_-|WP_143725207.1|DBSCAN-SWA
MKYKYTLASSTWDEKELQAIQDVIKSDMFTMGKKVAEFEKDFVKFVGSKYAVMTSSGSAANLIATAALFYTKNPKLKKGDEVIVPAVSWSTTYYPLYQYGLKLKFVDIDLETLNYDLNALNSAISDKTKMIMIVNLLGNPNDFDAIKDMIKDKDIVLFEDNCESMGAEYKGKQAGTFGIMGTFSTFFSHHMATMEGGFVVTDDEELYHILLCLRAHGWTRNLPKENLVANKSDDWFSESFRFVLPGYNVRPVEMSGAIGIEQLKKLPIFLKYRRENAKLFCDYFKNHPDFIVQKEIGVSSWFGFSLIIKPESKLCRYDILKKLENNFIEYRPINAGNFVNNEVIKYFDYEIHGELKNASYLHNKGFFVGNHQMDIKSQIELLNSVLN
>NZ_CP038862|102497:115380|106295_106577_-|WP_143725200.1|DBSCAN-SWA
MLKKLTEKYINAFNKKDIKEVANLLNENFVLEDPVVKRIEGKEECLKAIENIFKSCKELSFSAKNIFQDKNTTFIEFILILDETRLEGVDIIE
>NZ_CP038862|102497:115380|111111_112131_-|WP_143725205.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCNKYTGYVLNATISLYIHCTLIEREDRKIIFDSPDTNSHCEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAQILGKSWQSKKIISEIVSNDELERIYYLAMQNGAYSGKTSGAGAGGFMFFFIDPTKKYNLIKALSKEQGYVQDFSFTKEGVKSWRI
>NZ_CP038862|102497:115380|107288_107927_-|WP_126253049.1|DBSCAN-SWA
MTKIKAIIFDMDGVLIEAKDWHYEALNRALKLFGMEITRYEHLTTFDGLPTKDKLKMLSLERGLPKSLHSFINELKQQYTMEIVYSLCKPRFHHEYALSKLKFEGYKMAVCSNSIRNSIEVMMKKSALENYLDFYISNEDVKKGKPDPEMYIKAIERLKLNPKECMIVEDNENGIKAAKASGANVMIVDEVSEVNYENIKNHIFKFEKELKC
>NZ_CP038862|102497:115380|102497_103217_-|WP_143725196.1|DBSCAN-SWA
MIIIFPMAGLSSRFANAGYDKPKYMLDLKGNSVFFHAVNSFKKYFKDFKFIFIYRDIENTSNFIKEECEKLGIKSYESIRLEQETLGQAHTVRLGLERANIKDDESILIFNIDTFRPNFSLPTTLDFCKIDGYLEVFEADGEQWSFVLVDENDNVIKTTEKERISNLCSSGLYYFKKTKDFKEIFDRMKAENYFTKGELYIAPMYNYLIKKGLLIKYHKILLDEIIFCGMPDEYERIKK
>NZ_CP038862|102497:115380|114330_115380_-|WP_143725208.1|DBSCAN-SWA
MNKDSKIYIAGHKGTAGTSLVENLSKRGYKNLIFKTRQELDLLNQQAVVDFFKNEQPEYVFLTAVLPCGAANVSQRADFIYENTTIQNNIIHQSFKFGVKKLIFFGSGYMYPEKTVNPIKEESMLTGILEHNVTSFGVAKISGALMCESYNIQYGTNFITLALNNLYGTRANFDFGKSRVLPALLRKFHLAKLLEEEREEEILKDLKMKSLVEAKKYLADFGILKDYVEIWGTGKVRREFIHSDDLADAAIYVMKNINFSDLYKKNEKIKNTHINIGTGIDYSIAEVAQVVKQIVGFKGELIFNSQKPDSTMNRLMDCSKIHALGWRHKIELENGIKMMYNWYLNNKGE
>NZ_CP038862|102497:115380|110518_111124_-|WP_143725204.1|DBSCAN-SWA
MENLNSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYKNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSVLTAIGNDYGYENLFARQVQAQGFKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGAMNELCDYCIKVPSTCTPRIQEVHILIGHIICAIVEEELFGKGFSCKQ
>NZ_CP038862|102497:115380|105909_106239_-|WP_143725199.1|DBSCAN-SWA
MKNYKLDEMIRGWFVGNFDPSVFKTNNVEVGVKEYKKGDTEEKHHHKIATEITVIISGKVRMNDRIYSKGDIVMIYPGEATDFEALEDATNVVVKLPGANNDKYLGECQ
>NZ_CP038862|102497:115380|109862_110531_-|WP_143725203.1|DBSCAN-SWA
MQAIILCGGLGTRLKSVIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEAYVLNGDTFFDVDLSKLKINENKICLALKQMNDFDRYGTVNINKQGFVLSFEEKIFKKQGLINGGIYLLTKDIFNEFNLEKKFSFEEFLQENYKKLKARACIFDDYFIDIGVPEDYRFFYNSQI
>NZ_CP038862|102497:115380|112206_113145_-|WP_143725206.1|DBSCAN-SWA
MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLSCSHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNSKLAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIHGIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSASIGEDPDKRDYLVSNAKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV
>NZ_CP038862|102497:115380|104734_105133_-|WP_052794927.1|DBSCAN-SWA
MKTLLIDLDGTLTIDEENVDYIDKKPNLDLIQTLKEYKKQGFKINIFTSRNMRTFDGELEKIKTHTLPTIITWLKKYDVPYDEIIIGKPWCGYDGFYVDDKAIRPSEFTSLNYEQIKELLKKENPHKDGGNK
>NZ_CP038862|102497:115380|105187_105913_-|WP_143725198.1|DBSCAN-SWA
MNIVIPMAGLGSRFVKAGFDKPKPFIDVLDKPMIVRVLENLKYKGARYILIARKEHLTKEKKLVDKIKNNFNVEFIAIDKLTEGTACTVLYARKYINNDTPLMIANSDQIVDVDIADFINDSFKRGLDGSILTFIDKEKNPKWSFAKLNNDLVVEVKEKEAISEFATVGIYFFNKGKIFVESAIDMIIENDRVNNEFYTCPVYNYAIKSGAKIGIYNIDFSKMHGIGIPEDLEIFKAINKL
>NZ_CP038862|102497:115380|103226_104738_-|WP_143725197.1|DBSCAN-SWA
MILITSAKYSSSDFTLEFGKIPPSFLPLGNKRLYEYQIELFKNFNQKIFLSLPSDFKLSKFDEKKLKELNIEILFVPNNLSLGESVVYCLNVCCAFDEKLYILHGDAFFKELVFKENSLQVAKVKENYDWAYLNDEFNILSKTLEDDLILAGAYSFSHPQFLIKCIVESSYSFVDGMKSYSKAYAFDIIKNDTWLDFGLITSYFHSKKAVSTQRNFNNIDISNGYIKKSSSWQEKIKAEINWFDNLPKELFIYTPKVITYEDSYEIEYLCNNTLAELYVFGKLPSYVWKRIFKSLKEFLDKLHSFKSNDKDINFNCREKTLKRLQEFSKQSGINLHKNIVINSKSYPSILTLVDKLDFYMNDINEFSLIHGDFCFSNIMYDFRAGTIKTFDPRGFDFNGKITPYGDKKYDFAKLVHSVFGLYDFITAGFFECKVNSDNIEFFIEEDVNILDIQKEFLNIFNIDDNIKALTLHLFLSMLPLHNDFKEKQMAFLVNAFILYDKFF
>NZ_CP038862|102497:115380|106569_107295_-|WP_143725201.1|DBSCAN-SWA
MLNIVVPIAGKSYFFDDEKDGFPKPFIEICGKTMLEHFVKNYENVKSKRFIFILKEEDVKRYHLDDAINVLTNNQSKIIILKHETQGMVCSVLMAIDEINLNDSLLIVNMDQIFECDLNEVISDLSSNDAGVLSFESVHPRWAYVKCDENNFVLEAFEKKPVSKNAIAGFYYFNKAKFFITSAFDMIKKDVNYEGKYFIAPILNELILQDKKIINISIDKNRYFTFYSHAKINEYERIKNA
>NZ_CP038862|102497:115380|108655_109855_+|WP_143725202.1|DBSCAN-SWA
MHCPLCQSENDQKELFKTLNAFTSSGKLDKNSTQIKTTITTNDDGGGYCKGNNTITFTQCQDCGYIYNSTFNLNKISKEYQSEGYFSRKIVSKAMSNNIKTIKDKCLKYINKNCTCLEVAPGSGDMINALIRNVKFMYTVDPSLVSLEMENINNLKHIHGFFNYNILKNKLEYKINFIMFRHLLEHISTPLGFLKDVVKLLENNGIIYIEVPNIEEFIEYRRFYEIFNDHCGYYQKNVLINTLQSLGCEFIDEIFLYREQHMGLFFRKNTNICNINKLNFKLFDKNIYTLFQENIRKLNNLLHDYKNIAIYGSGAHGNTIITFIDNPEKIKKCFDLDVRKQGMYLQNSSIIIQEPNIENFKDLEVIIIAAPLYEEEIIRSLREKGYKGDIITTEKELKK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143725196.1|102497_103217_-	capsular biosynthesis protein	E3SJ89	Synechococcus_phage	4.4e-16	28.3
WP_143725197.1|103226_104738_-	capsular biosynthesis protein	B2ZYD9	Ralstonia_phage	3.8e-33	27.5
WP_052794927.1|104734_105133_-	HAD-IIIC family phosphatase	A0A2K9L0P7	Tupanvirus	1.2e-10	42.0
WP_143725198.1|105187_105913_-	lipopolysaccharide biosynthesis protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	1.3e-52	50.0
WP_143725199.1|105909_106239_-	hypothetical protein	NA	NA	NA	NA
WP_143725200.1|106295_106577_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_143725201.1|106569_107295_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	2.4e-30	33.2
WP_126253049.1|107288_107927_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	8.4e-35	42.8
WP_143725202.1|108655_109855_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_143725203.1|109862_110531_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	1.6e-07	26.6
WP_143725204.1|110518_111124_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.4e-15	34.4
WP_143725205.1|111111_112131_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.1e-59	40.5
WP_143725206.1|112206_113145_-	NAD-dependent epimerase/dehydratase family protein	A0A0F7LC08	uncultured_marine_virus	8.8e-73	45.9
WP_143725207.1|113166_114330_-	aminotransferase class V-fold PLP-dependent enzyme	A0A218MN59	uncultured_virus	6.4e-41	30.1
WP_143725208.1|114330_115380_-	NAD-dependent epimerase/dehydratase family protein	M1HWW2	Paramecium_bursaria_Chlorella_virus	6.6e-69	41.2