CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041769	Rhodococcus sp. WB9 chromosome, complete genome	4 crisprs	csa3,cas3,WYL,Cas14u_CAS-V,DEDDh,c2c10_CAS-V-U3,cas4,DinG,RT,Cas9_archaeal	1	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041769_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041769_1

194414-194528

Orphan

Consensus_repeat	Method
GGGTCGGTGACGCCGGGCTGCGACGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041769_1

>merge|NZ_CP041769|1|194414-194528|CRISPRCasFinder
GGGTCGGTGACGCCGGGCTGCGACGTGGTGGGTGGCGTCGTCGGGTCCGTCACGCCGGGCTGCGACGTGGTAGGCGCCGCATCCTGGGGGTCGGTGACGCCCGGCTGCGACGTGG

>NZ_CP041769|1|1|194414-194528|CRISPRCasFinder
GGGTCGGTGACGCCGGGCTGCGACGTGG	TGGGTGGCGTCGTCGGGTCCGTCACGCCGGGCTGCGACGTGGTAGGCGCCGCATCCTGG
GGGTCGGTGACGCCCGGCTGCGACGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041769.1\|WP_144284434.1\|189107_189707_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144284441.1\|196838_201467_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP041769.1\|WP_144284445.1\|206596_207505_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235628
NZ_CP041769.1\|WP_144284443.1\|205293_205746_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176859
NZ_CP041769.1\|WP_144284437.1\|192239_193007_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176220
NZ_CP041769.1\|WP_144284431.1\|186647_187094_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319901
NZ_CP041769.1\|WP_144284436.1\|190901_191180_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144284432.1\|187141_187549_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176874
NZ_CP041769.1\|WP_144288944.1\|187781_188120_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_005561111.1\|204029_204479_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP041769.1\|WP_144284444.1\|205747_206587_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187598
NZ_CP041769.1\|WP_144284442.1\|204511_205177_-\|TetR-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP041769.1\|WP_144284438.1\|193003_193681_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP041769.1\|WP_005263426.1\|191803_192181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_039953080.1\|203092_204007_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455
NZ_CP041769.1\|WP_144284440.1\|195983_196532_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380066
NZ_CP041769.1\|WP_005263409.1\|201459_202911_+\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
NZ_CP041769.1\|WP_144284435.1\|189718_190966_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_005249057.1\|196539_196815_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144284433.1\|188092_189136_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234

Protein	Function_ID	Function_description	E-value
NZ_CP041769.1\|WP_144284445.1\|206596_207505_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235628	PRK05855, PRK05855, SDR family oxidoreductase.	1.185e-145
NZ_CP041769.1\|WP_144284443.1\|205293_205746_+\|hypothetical-protein	gnl\|CDD\|176859	cd07817, SRPBCC_8, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.48571e-05
NZ_CP041769.1\|WP_005561111.1\|204029_204479_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	9.32538e-21
NZ_CP041769.1\|WP_144284431.1\|186647_187094_-\|glyoxalase	gnl\|CDD\|319901	cd07235, MRD, Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.	1.31262e-56
NZ_CP041769.1\|WP_144284432.1\|187141_187549_+\|SRPBCC-family-protein	gnl\|CDD\|176874	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	0.000220381
NZ_CP041769.1\|WP_144284437.1\|192239_193007_-\|hypothetical-protein	gnl\|CDD\|176220	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0.00900574
NZ_CP041769.1\|WP_144284444.1\|205747_206587_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187598	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs. 17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.81327e-85
NZ_CP041769.1\|WP_144284438.1\|193003_193681_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00436426
NZ_CP041769.1\|WP_039953080.1\|203092_204007_+\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	3.58743e-12
NZ_CP041769.1\|WP_144284440.1\|195983_196532_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380066	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain found in putative transcriptional regulator, TetR family proteins.	7.01591e-15
NZ_CP041769.1\|WP_005263409.1\|201459_202911_+\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NZ_CP041769.1\|WP_144284441.1\|196838_201467_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP041769.1\|WP_144284433.1\|188092_189136_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.24174e-23

>NZ_CP041769.1|WP_144284438.1|193003_193681_-|hypothetical-protein
MTEPPNRAPLDRFSHWFPPFASAPAPRSTAPAAETEQQPPAPTWLAPGDEADPTPPVRSGRGKQTLAVAGAAAAVIAGIAGVVAVFNSTSGDASGTPVAAADSGWCVESRDGSTVTGNGPGGTSDGVAAILGFDHAYYVARSGAKAREVVAPDAPVGSAETIQGGIDSVPEGTEHCLAITETEPGRYAVTLSELRPDGSAKKYEQVVTTADRDGRTYITSIGDAK
>NZ_CP041769.1|WP_144284437.1|192239_193007_-|hypothetical-protein
MTDQLLQALPVSTLVLGACGGAGATTTTLGLANTAAARGGAVVAVDATPAGGDVAERGADAVLSVSGLEQLVAAGPVADYVFDRYFSRTSAGTRILNRIGNQTASEREFHTVTGTLRARGVSAVHDLGHRLRAAYLAPLLATPSPLVLVVPCRADAFNRLRSALQSIGDTLGEPGLARTVVTVSNQDATGWQVDVDLLREYLGGQVWGIETIPYDEHLGMGIVIEHSKLATDTRAAYERVSAAASAVAEGRPERV
>NZ_CP041769.1|WP_005263426.1|191803_192181_-|hypothetical-protein
MGESVGDCSALLAEMDAFRQGFGQPALLTDALRSALLLIPLTGDDRLLTSTFGGLNWVCAFTSKQEYARYLLARDEQGGPCRFHTVFGWRLLDILVPSVPGPTGVVIDVAGATPMAFPPAVEEVA
>NZ_CP041769.1|WP_144284436.1|190901_191180_-|hypothetical-protein
MSWLSDTWDDAKGAIDDFGDAAENAIESTVENVGQAADSGLDAAAGLAQRVGADGIADTLTDLGDDIASATGGPVDRPGPGTDRRTQGTDPR
>NZ_CP041769.1|WP_144284435.1|189718_190966_-|hypothetical-protein
MDPSTDLDLGQTEEPKELIRGEPSAIAEATTTLTDLATSIGSTGDALRTVDAADWTGSAADGFNEIIDKQPALWRDAADAMNSAARTLVSWGHTVEAAQARAAAAVARWKQGEAEERAKKSAYNALTGEQQADHPLVDTWTAMREEAREILRGARADRDGVAGQVSGALTSATATAPTEPPFTERWMNNLTDATDGVHLGVANFYSGLLTGLSGIVQFVRQINPTDTYNMTHPAEYQAGLSNLATGIVVAAADTGTIVSTMVSDIRKNPLEFAGSLTGDAVLTAATGGAGAGVAGARTAVRVLDTAGDLGIGARLLDDVADVSHIPKPDTPHVDSPTPHADTHPIRRAPTRHRLPNRAVPNLPIPAPPSMPVRIRARTTPLTTPAPKPIARATRTAKAATPSTSRPVNSCSPKPI
>NZ_CP041769.1|WP_144284434.1|189107_189707_-|hypothetical-protein
MLPLVFGRRHRSGYRFGRWFGPSWSATVGMRVVVEEPGVTLLAEDGVMLTYPHPEVGTPVVPDSGQRWPLSRTDTGGYRVHDPDRGLTWHFTPKAELEGLDSVLGNIAISAITDRHRNRILFRYDTSGTPVEVSHSGGYRVLVDTRSGAGFPGVAKRFTVQIFRRRRAAIAERSHTSAHILASFTRNSEVVNLSETGRG
>NZ_CP041769.1|WP_144284433.1|188092_189136_+|IS3-family-transposase
MARTQKSVLIDTVTALHGQAGMPVARASALLGLARSSYYRLAHNYQHYRPVEEPIPHIDRRQPAALSATERRVIIDLLLAEENADRSVVQTYWRSFDAGLVACSERTFDRVARSQNLTGDRRRTRRGGSTARPKPVVAAAQVGQLWSWDITMLQGPRKQDRYLLYLAIDVFSRYPVAWRIEYAETTQLAVLMFAAAFEKFGAPLVLHADNGASMRSTGLLDALESAGVSASYSRPRVSDDNPFSESLFKTLKYDLSCPDRFDSIDHARQWTEQFLHRYATEHRHSGLSRHTPAAVFFGTATETRLHRQDRLDRIWTEYPERFRRRPRAPELPQLTGININHDLSQTG
>NZ_CP041769.1|WP_144288944.1|187781_188120_+|hypothetical-protein
MRENNLDRSTVQAWLKARNRGEFTASMVTAAEKSRSRRMNSRERAEVAKLRAENERLKEKVVQAEAAQQILGKAFELLQGITERSTEDTTEIPPALMSASEYAQWLERRSLS
>NZ_CP041769.1|WP_144284432.1|187141_187549_+|SRPBCC-family-protein
MLGAMTTESTHISVFIARTAADVYAYASDPANLPAWAAGLSTNITRDGDRWLADSPMGQVAVAFAPANDYGILDHDVTLPSGDTVYNPVRVIPDGDHSEVVFTIRRRDGVTDEEFAEDAAAVTADLQRLKGLLEA
>NZ_CP041769.1|WP_144284431.1|186647_187094_-|glyoxalase
MSETFNAGPPEVVSVLGMTATFSAIELVVHDLPTSLAFYRRLGLDIPADADQAPHVEFEFTGGVRLLWDTVETIRSFTPDWTEPAGGHRLALAFDCGTAADVDTLFDEFTGDGYTGRKKPWDAPWGQRYATVDDPDGNPVDLFAALTP
>NZ_CP041769.1|WP_144284440.1|195983_196532_+|TetR-family-transcriptional-regulator
MADKREQVLDAAITLLGTKGVRALTHRGVDELVGMPQGSTSNYFRSRGALLEGIVTRLVERDREDWQKFAHLRPAGTDALVEALVTLVRFSTGPDRVRTSARYALFVEASVTPGLDAKIGSARRALVEWGAEMLELVGSRNPASDAVVVTDYLDGVILHQLTVPDPDFDPTAGITAVLGALT
>NZ_CP041769.1|WP_005249057.1|196539_196815_-|hypothetical-protein
MHRRPAALMAINLQCRCRHDVIGTTDRLSPFCSTLGVVLAPGDVAFRSGRTFVGPTCNENDNSEPPTKHNLGWPIYPLNWALSRADLVRLH
>NZ_CP041769.1|WP_144284441.1|196838_201467_+|glutamate-synthase-large-subunit
MKQLPGPQGLYHPSNEHDSCGVAFVVDMKGRRSRDIVEKAITALVNLEHRGAAGSEPNTGDGAGILLQVPDKFFRAVVDFPLPAEGTYATGIAFLPQSKADAQRAADAVEKIVESEGLKVLGWREVATDDSSLGALARDAMPTFRQIFIGSENDALTGLDLERRAYVVRKRTEHELGSEGAGKDGPGRETVYFPSLSSQTFVYKGMLTTPQLKGFYLDLQDERVESALGLVHSRFSTNTFPSWPLAHPFRRVAHNGEINTVTGNENWMRAREALIDSDIFGVAGEVGPGKDRRSQLEKIFPVCTNGASDTARFDEVLEMLHLGGRSLPHAVLMMIPEAWERHESMDPARRAFYQYHSSLMEPWDGPASVCFTDGTVIGAVLDRNGLRPSRLWVTDDGLVVMASEVGVLPIDPATVVKKIRLQPGRMFLVDTAEGRIISDDEIKSELAAEHPYQEWLDQGLTHMDDLPDRPYTYMSHERVVLRQQMFGYTNEEVNLLVKPMALSGAEALGSMGTDTPIAVLSSRSRMLFDYFSQLFAQVTNPPLDAIREEVVTSLGGTIGPEHDLLHPTAESCRQIFLPQPILHNDDLSKLIHVNDDGEFPNFRSVIVRGLYPVAEGGAGLRKALDDVRYQVSEAIAGGARLVVLSDRESNETYAPIPSLLLTSAVHHHLVREKTRTKVGLIVEAGDAREVHHMALLIGFGAAAVNPYMAFETVDEAVQNNELQGVSLDKAIQNYIKAAGKGVLKVMSKMGISTLASYTGAQLFQVIGLSQELVDEYFTGLQSSLGGIGLDEIAADVAVRHSNAYLDRPEERAHRELEVGGEYQWRREGEYHLFNPDTVFKLQHSTRTGQYEVFKEYTKLVDDQSERLAALRGLFEFKKGVREPVPLDEVEPATEIVKRFSTGAMSYGSISAEAHETLAIAMNRLGGRSNSGEGGESPARFTPDENGDWRRSAIKQVASGRFGVTSHYLTNCTDIQIKMAQGAKPGEGGQLPAHKVYPWVAEVRHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPQARIHVKLVSEVGVGTVAAGVSKAHADVVLISGHDGGTGATPLTSMKHAGAPWELGLAETQQTLLLNGLRDRIVVQVDGQLKTGRDVMVAALLGGEEFGFATAPLVVSGCIMMRVCHLDTCPVGVATQNPVLRKRFNGKPEFVENFFLFIAEEVRELLAELGFRTLDEAVGQVDVLDTTKALEHWKGSKAGNLDLSPILHETESAFMDQDLYCTGTQDHGLDKALDQQLIVQSRNALDKGQKVTFESPITNVNRTVGTMLGHEVTKAYGGEGLPDNTIDITFTGSAGNSFGAFVPKGMTLRLHGDANDFVGKGLSGGRLVVRPPLETAPGFVAEDNIIGGNVILFGATSGEALLRGVVGERFAVRNSGATAVVEGVGDHGCEYMTGGKVVILGATGRNFGAGMSGGVAYVYNPDKVFEDNLNTELVDLEDLTGDDFTWLKSAIERHRDETGSEVAARILSDWSQQVNHFAKVMPRDYKKVLLAIEAAKKDGKNVDEAVMEAARG
>NZ_CP041769.1|WP_005263409.1|201459_202911_+|glutamate-synthase-subunit-beta
MGDPSGFLKHTSRELPVRRPVPLRLLDWNEVYEEFSPDTLKTQASRCMDCGIPFCHNGCPLGNLIPEWNDLVYKDRWHDGIERLHATNNFPEFTGRLCPAPCEASCVLGINQDPVTIKQVEVELIDRAFDEGWVKPVHPTRSTGKKVAVVGSGPAGLAAAQQLTRAGHMVTVFERADRIGGLLRYGIPEFKMEKRHIDRRLDQMNSEGTVFKTGVNVGVDITADALRAQFDAVVLAGGATEARDLPIPGRELDGIHQAMEFLPIANRVQLGDLEKPTITAEGKKVVIIGGGDTGADCLGTSHRQGAESVHQFEIMPRPPETRAEHTPWPTYPLMYRVASAHEEGGERLFSVNTERFVGADGKVTALKAHEVEMKSGRFEKVEGSDFELEADLVLLAMGFVGPEKPGLLTDLGVDLNERGNVARSAKWATNVDGVFVAGDMGRGQSLIVWAIAEGRSAAAAVDAYLEGESALPSPIETTTAPQR
>NZ_CP041769.1|WP_039953080.1|203092_204007_+|cutinase-family-protein
MKRVVAFLTAVAAAAAIPVVSGVAGTSAVANADPCPSLYVVAIPGTWETSTKDNVRPTPGLLSAVTNGLPSSIRTDYVTYAATAFPWESEVYGRSKAQAVSNAKGMLSSMSQQCPDTKLSIIGYSQGADAAGDLAAEIGTGLGVVPADKIAAVGLVSDPRRSPTDALVGPAVAGSGAGGPRIGGFGWVSQNTRTFCAYGDLYCSTPKEDFVTRLAGFLAQTSDPTPTLFGRYQQEALAIWNDILAVGGVPALMAQLDEQSNEKRIDELEQFYKSQAHQDYTRYAVDGSGTPATTWLRNWLRDIA
>NZ_CP041769.1|WP_005561111.1|204029_204479_+|acyl-CoA-thioesterase
MMSNVTDTPAAVVGYDAFVTVRWSDMDAFQHINHARMVTLLEEARIDWLLSEGSENSSLITSAFIADIHVKYRGQLRHSDSPLRITMWIAKHRAVDFTIGYEVRGARTPITDPPAVTATTQMAVADVDAQRLRRITATEREYLTRWSRT
>NZ_CP041769.1|WP_144284442.1|204511_205177_-|TetR-family-transcriptional-regulator
MTKPQQDAGDGRAARWRGQREKRRSEFVERALVAIDAEGPDVSVATMAVYAEVARTRIYRHFDDSTDLKKAVARRVAAMMLLEYAPVITVDGAPHAILTRAARTHLDWVTEHANLYRYLMSFSPAAGEVRRAISTAVADMLHPYLDALGAPATATPLANALIGMVESVSAEWIDRPGGTDVSALTEQLAAWAWSLVDTTMRSRGAVLDPDRPLPAPDDLRT
>NZ_CP041769.1|WP_144284443.1|205293_205746_+|hypothetical-protein
MSIQLCLSGPRSSGRSMIGLRSTTVVVVPPAMAFEYLADPAAVPGAITLPSRARVVASDPGRRLVVEADHGVHGSVWTFDAVSPDETELTVAFRYHSPGRPAGQLLGGVAAPVVWQALRRAQATLKDRIETLYHEPAGPAGPAGIDRRRA
>NZ_CP041769.1|WP_144284444.1|205747_206587_+|SDR-family-NAD(P)-dependent-oxidoreductase
MGFSVAGKTVLITGAAMGMGRLFARLAAADRAGTVVLWDIDAAALERTAHELRESGCTVSAHVVDVADLESVRTAAAEVRDAVGRPDVLVNNAGVVRGKYFWDHDHESDTKFVMDVNTLAPMYITNEFLPAMIEDRGRDCRIVNIASAAGTVATPRMAVYAASKWAALGWSDSLRLELVQAGHGHVKVTTVCPSYISTGMFDGVKNPLFAPILSPEDVTARSWRAMKQGKPLLMLPRSLYLSWVAKAVLPVRAWDRLADRLGVYHSMDAYTGRVQAPTP
>NZ_CP041769.1|WP_144284445.1|206596_207505_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSLLGEVRGWRSGTRKHHRLRDLDGTLVVVTGGGSGIGRETALAFASEGAVVVVADRDLESAQQTSDLINSAQMKGGGAVAIFGGGSHAYQVDVAVEDEVQRFAEKVQSEHGTPDIVVNNAGIGYSGTFTKTPQKDFERVMDVNFWGVVYGSRAFSQQMIDRGTGGHIVNLSSAAAFTPQKRLTAYATSKAAVFMLSDCLRAELVNHGIGVSAICPGLVHTNIVKATDFAGAIPEEQTKMRERADKLYRRRGFTPDRVATQIVRAVKHNKAVVPVTPEAKFGRALSRLAPGSMRLGARFDLG

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Crispr_ID: NZ_CP041769_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041769_2

636317-636534

Orphan

Consensus_repeat	Method
GGCGGGTAATTTCCGCCGGGCGGCGG	CRT

3 spacers

The CRISPR arrays of NZ_CP041769_2

>merge|NZ_CP041769|2|636317-636534|CRT
GGTGGCGGATATCCGCCGGGCGGCGGTCCCTGGGGCGGCGGCGGGTAATTGCCCTGCGGCGGCGGGTAATTTCCGCCGGGCGGCGGCGGGTAATTACCGGGGGGCGGTGGATAGTTTCCGCCGGGCGGAGGCGGGTAGTTTCCGCCGGGCGGCGGTGGCGGATATCCGCCGGGCGGCGGTCCCTGCGGCGGCGGCGGGTAATTCCCCGGGGGCGGCGG

>NZ_CP041769|2|1|636317-636534|CRT
GGTGGCGGATATCCGCCGGGCGGCGG	TCCCTGGGGCGGCGGCGGGTAATTGCCCTGCGGC
GGCGGGTAATTTCCGCCGGGCGGCGG	CGGGTAATTACCGGGGGGCGGTGGATAGTTTCCGCCGGGCGGA
GGCGGGTAGTTTCCGCCGGGCGGCGG	TGGCGGATATCCGCCGGGCGGCGGTCCCTGCGGCGGC
GGCGGGTAATTCCCCGGGGGCGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041769.1\|WP_144284726.1\|643131_643692_-\|TIGR03086-family-protein	unknown	unknown	gnl\|CDD\|274424
NZ_CP041769.1\|WP_144284725.1\|641554_643093_-\|metallophosphatase	unknown	unknown	gnl\|CDD\|277344
NZ_CP041769.1\|WP_144284715.1\|623435_625790_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP041769.1\|WP_144284721.1\|634845_635481_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP041769.1\|WP_144284719.1\|630915_632604_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293759
NZ_CP041769.1\|WP_144284722.1\|638346_638955_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379409
NZ_CP041769.1\|WP_144284723.1\|639696_640278_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380066
NZ_CP041769.1\|WP_144284727.1\|643688_644498_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378964
NZ_CP041769.1\|WP_144284716.1\|625916_627650_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041769.1\|WP_144284724.1\|640983_641565_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041769.1\|WP_144284720.1\|632710_633955_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP041769.1\|WP_037239554.1\|637378_638335_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_CP041769.1\|WP_005253341.1\|635640_636309_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227760
NZ_CP041769.1\|WP_144288963.1\|640261_640930_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP041769.1\|WP_037239559.1\|639034_639613_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP041769.1\|WP_005248717.1\|633998_634727_-\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842
NZ_CP041769.1\|WP_144284718.1\|629668_630910_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144284717.1\|627646_629626_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041769.1\|WP_144288962.1\|636840_637410_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP041769.1\|WP_005253325.1\|622782_623385_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483

Protein	Function_ID	Function_description	E-value
NZ_CP041769.1\|WP_144284726.1\|643131_643692_-\|TIGR03086-family-protein	gnl\|CDD\|274424	TIGR03086, TIGR03086, TIGR03086 family protein. This family, like pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.	3.71368e-27
NZ_CP041769.1\|WP_144284725.1\|641554_643093_-\|metallophosphatase	gnl\|CDD\|277344	cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.91013e-23
NZ_CP041769.1\|WP_144284715.1\|623435_625790_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.38644e-111
NZ_CP041769.1\|WP_144284721.1\|634845_635481_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.48374e-18
NZ_CP041769.1\|WP_144284719.1\|630915_632604_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293759	cd16035, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	3.52165e-43
NZ_CP041769.1\|WP_144284722.1\|638346_638955_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379409	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal. This family comprises the C-terminal portion of proteins that belong to the TetR family of transcriptional regulators. The C-terminus represents the regulatory region, and does not include the DNA binding helix-turn-helix domain. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. One of the target proteins is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	5.66886e-11
NZ_CP041769.1\|WP_144284723.1\|639696_640278_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380066	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain found in putative transcriptional regulator, TetR family proteins.	6.57524e-17
NZ_CP041769.1\|WP_144284727.1\|643688_644498_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	6.09686e-14
NZ_CP041769.1\|WP_144284716.1\|625916_627650_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.40519e-156
NZ_CP041769.1\|WP_144284724.1\|640983_641565_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.73148e-08
NZ_CP041769.1\|WP_144284720.1\|632710_633955_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.7798e-171
NZ_CP041769.1\|WP_144288962.1\|636840_637410_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	7.97566e-21
NZ_CP041769.1\|WP_005253341.1\|635640_636309_-\|hypothetical-protein	gnl\|CDD\|227760	COG5473, COG5473, Predicted integral membrane protein [Function unknown].	5.31528e-12
NZ_CP041769.1\|WP_144288963.1\|640261_640930_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.31211e-51
NZ_CP041769.1\|WP_037239559.1\|639034_639613_-\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	4.76587e-19
NZ_CP041769.1\|WP_005248717.1\|633998_634727_-\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	2.45077e-50
NZ_CP041769.1\|WP_144284717.1\|627646_629626_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP041769.1\|WP_037239554.1\|637378_638335_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	6.91048e-124
NZ_CP041769.1\|WP_005253325.1\|622782_623385_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	3.46236e-22

>NZ_CP041769.1|WP_005253341.1|635640_636309_-|hypothetical-protein
MSDYGTPGQTPGQFSVGDAIGYGWNKFKDNALIWIGILLIAAIIQVVLNLVFGGFSTSSDMSAAFSVWRIIGTIVTTIVGYLINAALVRGALHEVDGNKPAFGSFFQFTNVGAIIIASVIIGVAATIGFVLLIIPGLIVIFLTWWTLQFVIDQNEDAITGIKSSFRVISQNVGPVLLLALALVGINIVGAILCGVGLLVSIPITIIASTYAYRVLTGRYVAA
>NZ_CP041769.1|WP_144284721.1|634845_635481_-|RDD-family-protein
MTTGGFDPGQGQQPFGGQQYGQPHYNGAGRQQHGQQFGAPPQFDSAQQFGTQPFAQPDFGFDPFRPGELLPRLGARVIDGLIVGIPMAVVSTVLALVLGNFLGSVLGAILTAAAAVGYFVFLETTRGQTLGKQILGLRVEGPNGGLPTQQQSLTRNGFYVLSALGGFPLLGFLFGLLGVVAAIIIGVTINGSPTKQGKHDELAGGTRVVQG
>NZ_CP041769.1|WP_005248717.1|633998_634727_-|queuosine-precursor-transporter
MTASDQQTKPDDHATFAHVSRGYYPTFVALFTATLLISNICATKGVAFFADSSLTIGPLQILPVITDGGFFLFPLAYILGDVLSEVYGFKSTRRAIYLGFGALILAAFCFWLLIELPSADFYENQEALRSVVGVYPRLLLAGLAGYLVGQMLNSVTLVLIKERTKEKHLWARLIGSTIVGEFADTLIFCSIAAGAIGISTWSDFVNYVIVGFLWKTLVEVLVMPITYRVIAYVKKREPTYQL
>NZ_CP041769.1|WP_144284720.1|632710_633955_+|tRNA-guanosine(34)-transglycosylase-Tgt
MNAVVPTPPDPFFTVGTRLDGQLGRTGTIHTPHGDIATPSFVAVGTKATVKAVLPESMKELGAQSLLANAYHLYLQPGPDIVDEAGGLGKFMNWDGPTFTDSGGFQVMSLGVGFKKVLAMEAVGVRSDDVIAKGKERLATVDDDGVTFKSHLDGSRHRFTPEVSMQIQHQLGADIMFAFDELTTLLNTRGYQEQSVERTQAWAVRCIAEHEKLTAERSHRPYQALFGVVQGAQYEDLRKQACRGLESITGESGRGFDGYGIGGALEKQNLGTIVRWCNEELPEHKPRHMLGISEPDDFFVAIENGADTFDCVNPSRVARNAAIYHPDGRFNINTSRFRRDFTPIDENCDCYTCANYTSAYIHHLFKAKEMLASTLCTIHNERFTVRLVDQIRASIEGGYFDEFKADTLGRFYRT
>NZ_CP041769.1|WP_144284719.1|630915_632604_-|sulfatase-like-hydrolase/transferase
MSDEKAGHRIDRRTFLSGAAVAGGVTVMSGLFDRRADASEKPLHRQPSTYVQPNIVFIVVDEMRFPQVFPAGITTADQFLQRFMPNLYRLWAPGVKFTQHYTAGVACSPGRACFVTGLYPLQNWMLQTRTGNRASPVPSPAMGRDFPTYGKLLRQAGYVTPYVGKWHLSPSPDEDSGLAPGYLEEYGFDGLTMPDIIGMNGEGFEFDGHIADQAAAWLSTRKPGDGPFCLTASFVNPHDQQFFWAGTEAERYQSLYANNVPPLSPARAWSVTTAESDPPRLGYPSVPPNWEPEKALQSKPSTQVFAREFQALVWGGVTDDIQNLSNYYLQPYGQGTDPDRHIAFAPYTYWERALDSYTNVLSMVDHHIGTVINSLPEDVAANTVFVMTSDHGEYAGAHGFVAGKLSTAYDEAFHIPLIVADPTGRFTGDTDTPRGQLTSSVDVVPLLATLGHGDRNWMSGDLFATYAERVDLLPLLRSNAAAGRDHVVLATNEHAPQGVNWNNSPTHIYVLRTPEAKVAVYSKWLGPTAYVDPASFQYEFYDYATERGREGIDKLTAFGEVF
>NZ_CP041769.1|WP_144284718.1|629668_630910_-|hypothetical-protein
MTGKVVAAVLVLLLWSGGASLASAAPPPTAQCAWQFMSDSTVLDVAFPDANATYWVLPYALGPGDTIELSGSYPAARYFSLNTYGTNFDTVDTLRDNQIGPDPGSGNPFADAAAGALPATQKRWHATVVTGPADHSRNQIQALPAGADAQSVPVGFLIIRVYVPDDPASPTGGVPLPDVTLTFGGRTSPVPTCGSAFDPSAYDNGPLGQAAEAAFDQIIAGAASGAFPGNVPEATFVNPASTSGLFPNGDNKYVGAGLTYQPGRIVVVQGRAPTFPDTRAGQPVTAPGRQVRYWSMCQNDQVTPYPVVACAADFQTRTDGAGNYTYVVAAPQDVPARAASDPTVTVIPWGSTDVAKKVLFLRYMLPSDAFYPQSVQASQNNHTDPATTMGPYYPRAAYCDTAAFEAGGSTACL
>NZ_CP041769.1|WP_144284717.1|627646_629626_+|ATP-binding-cassette-domain-containing-protein
MSDRATTTTAERPAGPRIPGPVAPGAPGSKPNDLWPSTKRLLRRLRPHRIAVGIVLLVAAVSVVLTSIAPRMLGQGTNLIFDGIIGAQLPAGMSKDQAVAALRADGQNTFADMVSGMAVVPGVGIDFSALGRVLAIVLALYLGSSVFMWLSGFLLNIIVQGVVKNLRAEVERKIHRLPLRYFDSHSRGDLLSRVTNDIDNVSQSLQQTMSQLIVSAMTVIGILVMMIVISPLLALIAVLTVPLSILVTAQIAKRSKTHFVSQWKSTGALNSHVEEAYTGHELVTVFGRSREVEARFEEQNEALYQASYRAQFISGLIMPAIMFLGNLNFVAIAVLGGMRVASGTMSLGDVQAFIQYSRQFTQPLTQIGAMVNLMQSGVASAERVFAILDEDEEERDLTEAPTPAEPRDAGRVHTFGRVEFSDVSFSYSPEKPLIENLSLVAEPGQMVAIVGPTGAGKTTLVNLILRFYELDGGKILLDGVDIAEMPRDDLRSRIGMVLQDAWLFGGTIRDNIAYGRPDATEEEIQAAARISYVDRFVHSLPDGYDTVIDEEGSNISAGEKQLITIARAFISQPSILILDEATSSVDTRTELLVQHATAVLRSDRTSFVIAHRLSTIRDADLIVVMEDGRIVEQGSHDDLLLTRGAYYRLYNSQFVGADV
>NZ_CP041769.1|WP_144284716.1|625916_627650_+|ATP-binding-cassette-domain-containing-protein
MLNALLTTYLRPYKRELTAVVLFQLVATAAALYLPSLNADLIDNGVTKGDTGYILSTGLMMLLVTVVQIICSIGSVFFGARAAMGFGRDVRRAVMHQVGSFSSREFGRFGAPSLITRNTNDVQQVQMLVVMSCTILVMAPIMCVGGVVMSIREDAGLAWILAVTVPVLALSMGFVISRMVPAFREMQTRIDGVNRVLREQITGIRVVRAFVRERSEVARFGDANEQLTQTALRVGRLTAVMFPLVMVIANITSVAVIWFGGHEINSGTMQVGSLTAMLSYIMQILMSVMMASFIAMMAPRATVCAERIGEVLATNSTVVPPVDAVTVLENPGAVELRDAQFKFPGADEPVLRDISFRAEPGKTTAIIGGTGSGKTTLLSLIPRLIDATSGSVTVSDTDVRRIDLDVLRSGIGLVPQRPYLFSGTVATNLRYGKPDATDGELWRALEIAQAADFVRAMPEGLDTPIAQGGTTVSGGQRQRLAIARALVRRPSIYLFDDSFSALDLTTDARLRAALKPETSDACVIVVAQRVSTIVEAEQIVVLEDGAVVGIGTHDQLLETCPCYVEIVESQRSVQEAL
>NZ_CP041769.1|WP_144284715.1|623435_625790_+|MMPL-family-transporter
MATYLYRIGRFAYRRKGAVLSVWLVILVLMGVGAATLSGPTKDSFSIPGTPAQQAQDLMAERFPEAAGSDPMNAVSARYVFAAPEGQTLESEQSRQAMDAVLAKVRGIDQVQDAAKVDPATASGADAAKALVNPVTANEQLVEMAKSSAADKGIGEEAAVANAQALSPLNADKTVGYVEVPFKGSMGDVDQALRDQISAAADAGRNAGLTVEISGSAANEAEPPGGATELVGIGVAAVVLALTFGSLVAAGLPLITAIIGIMIGSLGITVATGFTDLSSMTPTLAIMIGLAVAIDYSLFIVSRFRHELTLTDDRSEAAGRAVGTAGSAVVFAGLTVIIALIALRVVGIPFLSDMGAAAAFTVFIAVSIALTLLPAILGLFGKKAFAGKIPFLSSRDLEDDEGKPSLALRYISAVVRRPAIPLIAGVVVLGALAIPAAGLSLALPSEGTGDPATSSRQAYDLVSEGFGPGKNGPLLVVVDAKDVTTGTPSEAFGEVVKTITAQDDVSNAQVVGVNKAGDTAQILVTPSSAPSDPATMDLVNNIRGAEAGLHDSIGVNYGVTGQTALEGDVSETLQDALIPYLAVVVGLAFLLLLLVFRSVLVPLTATLGFLLSVAATFGVTVAVFQEGWGGIISNPQPIVSFMPIFLIGVVFGLAMDYQVFLVTRMREEYVHGATAKQAVTVGFNHGARVVSAAAVIMISVFAAFIAEPNSFIKSIGFALAAAVFFDAFVVRMVIIPSVMALLGDKAWWLPKWLDKILPNVDIEGEKLKKVLHDADEPLVGASRP
>NZ_CP041769.1|WP_005253325.1|622782_623385_+|TetR-family-transcriptional-regulator
MISEIGLRDRKKAATRAALSGAAARLARALGIECVTADAIASEAGVSTRTFHNYFSSKEEAVLAHFEQSVHDWVDLLRARPEDEPIWDSLEHVVVQIVTDPAKPLEETAVMMELVETSPALLAKKLEVHLRVTRLVGEVIAERTGTNIDTDLYPNLLHLAVGSACKASLDLWMSGKSGASGPEELVRDAMRQLRQGIPQP
>NZ_CP041769.1|WP_144288962.1|636840_637410_+|DUF4190-domain-containing-protein
MPRDGYGVDESGYPTYSAPTEKYPDYQQPGAYGTSPNPYAAPNQNQYGGDQYGAPNQQYGTPNPYAAPNQYSAPNQYGGAPNQYGASGRYGGPAPLYGPPNPYGAPYQRALGTNGLAIASLITSIVGGCFYGLGSIVGIILGIIALGQIKQSGQEGRGLAIAGIAIGGAYVVGWILFFLIMVIAAASGA
>NZ_CP041769.1|WP_037239554.1|637378_638335_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSHPSRQSEPLSPRAEGAGRFAPSPSGDLHLGNLRTAVLAWLFARSTGRKFLLRVEDLDRVREGARDRQLADLAELGLDWDGDVVSQSHRLSRYDAAIAELHAAGLTYECFCTRREILKAASAPHAPQGAYPGTCRNLTPDERADRLAGGRPPALRLRAGVTSFTIDDILHGSYSGMVDDLVLRRGDGTPAYNLAVVVDDAAQGIDQVVRGDDLLSSAPRQAYLAGLLGLTAPTYAHVALALNEDGNRLAKRDGAVTLADQKALGRTPSDVLGVLATSLRLAEPGEVVDLGTLLDRFDPARLHREPWVVRLPTPPQSP
>NZ_CP041769.1|WP_144284722.1|638346_638955_-|TetR-family-transcriptional-regulator
MRERRYSSTSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLTRLSEVDRGGDPARALFAAMSQLLPLDEARSREAHVMAAFAVRAATSPSLAEIRRKTLFTIRTGLSAVLIGIGTPEAETRAALLLATVDGLALDAIGSPALYPPEYLEHALDTQIGMILQGADVVSSSIELAS
>NZ_CP041769.1|WP_037239559.1|639034_639613_-|dihydrofolate-reductase
MRKLVYYAAATIDGFIAGADGSDPTGTIFEIEGDHMPVMIAEYPETVPTHMRAPLGIDAPNKHFDTLLMGRASYQPGLDLGVTSPYAHLRQYVFSTTITESPDPDVEIVSGDPIEKVRELKREDGKDIWLCGGGKLAAAVQPEIDELRIKLNPVAIGTGIPLFDGELGPQRFRLAASRAFESGMIFLTYVRR
>NZ_CP041769.1|WP_144284723.1|639696_640278_+|TetR-family-transcriptional-regulator
MAQNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFASRDDLFDQVGKRIHERMGPDPSVIEESGRKPQNLALAIEYMQGLFGRITRDRTGYLALQELRLEAVRRPELRTTLTRTISENLERDIGFHLDSGLPGDRSTVLMLYLAMNALIVEHLTLPGVLEGIDTERLVADLVTRAVATPDA
>NZ_CP041769.1|WP_144288963.1|640261_640930_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MWYWIFKYVLIGPVLRIFGRPTIDGAHHIPVSGPVILASNHLTVVDSFFLVLMVRRRITFVAKSEYFTEGGAKGRAKHWFFTAAGQVPIDRSGASAAESALNTAEKILDDGKVWGIYPEGTRSPDGRLHKGKTGIARVALATGAPVVPVAMHGTRQVNPVGSRMWRFGTVSVTVGEPLDFSRFSELRDNRHVVRAATDELMHALMTLSGQEYVDDYALRRPA
>NZ_CP041769.1|WP_144284724.1|640983_641565_+|TetR-family-transcriptional-regulator
MIDTVYMSGEVQPLRVRLIDCGRELLDDGGIDAVGLRAVARHAGVSHGAPRRYFPTHKALLAAIAASGFAELSEELRSAIVSEADPLARVRRTARQYLSFADAHRTLFELMFRHDLLEGSGEDLRHHSKPLFDTVVALVADAGAETPHMVALNLWTQLHGVATLRVTRSIEVIAGDFDVEAFVAQLIDLHLRA
>NZ_CP041769.1|WP_144284725.1|641554_643093_-|metallophosphatase
MSVPGRIAALTAVSLAAALLGGDVIAVADPEPRGASGLPARGLVTSAPLASAVMFAGITGDAAPSQRVPGEESNGRSATSHRFDEYPYMRYEVRFGPESAGTDVTWHGRSMNLDDLAMHVWDEEGQSWGEPVATAQPSEPGGPVTLTTRIEGEDSAQILVIDGPRRDRSFREANATADQQFADPNAYDFALQHISDTQYVSRDRPEVYFDMTRWTAENAAERKIAYSMHTGDLVQSWIRPGAPESRARPEFEVADKAMATLEEAGIPYGVLPGNHDNLWNVGGRLIPGEHEKNHSLYNEFFGPWRYRDQPYWGESVTDTDNSAHYDLLDIAGAKFLMLYIGYNPPEHVLQWAEGVLADHPDRNVVVGSHYYLDEDGSLRMSGFGDIGSSAGQQIWNRLVVPFETVFLVLAGHVDGQTTVTDRKVGDTDRKVVELLADYQYFTVDSRRETGFQRLLQFDLDGGTLAVTTHSPTLDSFRVEDFDPQRRYQPGDGDFVTDVELRADLPRAVLPTP
>NZ_CP041769.1|WP_144284726.1|643131_643692_-|TIGR03086-family-protein
MTSTTETPAAHYRDLAAKFTKRVESVPAARWDDASPCDGWTARDVVRHVIDTQRYIVTVVDLELPEPPSVDDDPVAAWAATRDGMQEILNDPALVSREYDGHFGRTDLGKTIDSFYCFDLVVHGWDLARATGLDETIPAGDLTWVGGVAEQMGESIRTAGVCGPAVDVPTDADEQTRVLAFLGRKA
>NZ_CP041769.1|WP_144284727.1|643688_644498_-|helix-turn-helix-domain-containing-protein
MGWYTPTAPSPDLSGTLVCGWSARTQGEHLLVPDACMDILWIPGAGIRVCGPETRAWSFALPPGTESVGVRFRPGAASHLLRTSAAEVRNIRVGLGDVLGSTWERKLTDRLDNAPGYAERIALFENAVRAWRNRGPEADPLIGTVRKALARHSWNVGALADAASVTERQLQRRCNDAFGYGPATLRGILRLQRFMALAQSGTRTGLAELAATAGYSDQAHLSRECRRISSLTPSDLLTSEAPDWHGTESVVDVGNVQALGRRTGEESAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041769_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041769_3

2080318-2080549

Orphan

Consensus_repeat	Method
CTTGGCGCCGGGTGCCTTCGCCCCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP041769_3

>merge|NZ_CP041769|3|2080318-2080549|CRISPRCasFinder
CTTCGCGCCGGGAGCCTTGGCGGCACCCTTCATCTGCAGACCCTTGCCGCCCGGTGCCTTCGCGCCGCCGGCGAGTCCGAGGCCCTTGGGCTTGGGTGCCTCCGCTGCGGGCGCCTCCGTACCGGCAGCCTCGGCCGTAGCAGGAGCAGCCTTCTTGGCGCCGGGTGCCTTCGCCCCGCCTGCCATGCCGAGCCCCTTGCCGGGTGCCTTGGCGCCGGGAGCCTTCGCCCCG

>NZ_CP041769|3|2|2080318-2080549|CRISPRCasFinder
CTTCGCGCCGGGAGCCTTGGCGGCA	CCCTTCATCTGCAGACC
CTTGCCGCCCGGTGCCTTCGCGCCG	CCGGCGAGTCCGAGGCC
CTTGGGCTTGGGTGCCTCCGCTGCG	GGCGCCTCCGTACCGGCAGCCTCGGCCGTAGCAGGAGCAGCCTT
CTTGGCGCCGGGTGCCTTCGCCCCG	CCTGCCATGCCGAGCCCCTTGCCGGGTGC
CTTGGCGCCGGGAGCCTTCGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041769.1\|WP_144285589.1\|2072859_2073288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285592.1\|2076898_2078845_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP041769.1\|WP_144285590.1\|2073284_2074004_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NZ_CP041769.1\|WP_144285599.1\|2086639_2087173_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP041769.1\|WP_144285591.1\|2075473_2076874_+\|carotenoid-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|376981
NZ_CP041769.1\|WP_144285593.1\|2079281_2079683_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285598.1\|2085906_2086608_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285600.1\|2087240_2088551_-\|protease	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285595.1\|2083573_2084017_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285588.1\|2071687_2072869_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285601.1\|2090259_2091012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP041769.1\|WP_005253475.1\|2069117_2069342_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285603.1\|2091533_2093477_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP041769.1\|WP_144285602.1\|2091033_2091255_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_005238294.1\|2088790_2090110_-\|protease	unknown	unknown	gnl\|CDD\|365866
NZ_CP041769.1\|WP_144285597.1\|2085169_2085910_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285586.1\|2069353_2070661_-\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|377940
NZ_CP041769.1\|WP_144285596.1\|2084309_2084996_+\|ammonium-transporter	unknown	unknown	unknown
NZ_CP041769.1\|WP_144285587.1\|2071164_2071683_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_005238257.1\|2074060_2075323_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738

Protein	Function_ID	Function_description	E-value
NZ_CP041769.1\|WP_144285592.1\|2076898_2078845_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	8.41863e-52
NZ_CP041769.1\|WP_144285590.1\|2073284_2074004_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	1.42674e-05
NZ_CP041769.1\|WP_144285599.1\|2086639_2087173_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.58078e-39
NZ_CP041769.1\|WP_144285591.1\|2075473_2076874_+\|carotenoid-oxygenase-family-protein	gnl\|CDD\|376981	pfam03055, RPE65, Retinal pigment epithelial membrane protein. This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria.	1.65151e-116
NZ_CP041769.1\|WP_005238294.1\|2088790_2090110_-\|protease	gnl\|CDD\|365866	pfam00089, Trypsin, Trypsin.	0.00434291
NZ_CP041769.1\|WP_144285601.1\|2090259_2091012_+\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.000549722
NZ_CP041769.1\|WP_144285586.1\|2069353_2070661_-\|YibE/F-family-protein	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	1.09915e-84
NZ_CP041769.1\|WP_144285603.1\|2091533_2093477_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.01462e-15
NZ_CP041769.1\|WP_005238257.1\|2074060_2075323_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0

>NZ_CP041769.1|WP_144285593.1|2079281_2079683_-|hypothetical-protein
MGALLFSVTARVAHGVTSDMMTSGADLTFRRAATYTVAVMGGAVVVALLSVAWMSIGSGDRAESMMECAGGEKYVLVFGPPALLLLGGIGAFVQTYRVWRAGGRWQIWQGAGWMLFVFMLIYASLSAGALTEA
>NZ_CP041769.1|WP_144285592.1|2076898_2078845_+|prolyl-oligopeptidase-family-serine-peptidase
MTSAPYGSWPSPIAAADLASSGHPVEGGRYVGDDVWWSELRPSEGGRVAVRRLGLDDEPEDVLPAPWNARTRVHEYGGGAWTVTDAGRLVFAEFSDQRLYLLEGGTPVPLTPEPPQPCSLRYGDLSVIDGEVWAVREMHDTDGGVSRDICVIPLDGSAANDPHRVRSVVAGSDFLANPRLSPDRRHLAWIAWDHPQMPWDGTELRVVAVEGGRVTGKVRTLLGGPEESVLQPEWDGPADLYTISDRSGWWNLYRVGIDDPDPVALCPMDADFGGALWMLGGRWHTRRDDGTLLTVRTFGTDTLAVLDPATGSLVDIPLDGLTSVGLGDRNGNRILLLTGGAQTPSGLRELDLDTGALRTVRLSVTELPEAAYLPEARQLTFQGAEREVHVIAYPPRHPRYRGEDGELPPYVAFVHGGPTSRVAPSLNPVFAFFTSRGIGVVDVNYGGSTGYGREYRNRLRGQWGVVDVEDVVTAVTGLAEAGMADPGRLAIEGGSAGGWTVLAALTTSDVFACGASYFGVAELDGFVKETHDFESRYIDGLIGPLPEAADLYAERAPLNNVGGLNCPVLLLQGLDDPIVPPSQAERFRDALVEKGIPHGYLEYEGESHGFRKLATLISSRNAELSFYGQVLGFEPPDIPRLELWRPEG
>NZ_CP041769.1|WP_144285591.1|2075473_2076874_+|carotenoid-oxygenase-family-protein
MSAPVSRRPGPVDIAHHSHLVGVFAPQREEVDVRDLEVIGELPADLHGAYLRNGPNPRFDPIGTYVYPLDGDGMVHRIEIADGAARYTNRFVRTPMVQAEEKAGHVIWPGVTDLYTPTEDEVAPDLAGTSRELPDINIVRHGGRLLAMAETTLPFRLDPADLSTLGRENCDGAMGVGSTAHPKLDPVTGEMVLFNYMLEAPYLTWSVVNPDGSVARPPTPVAGADTPLMIHDMALTERYIVLMLCPLVFDIAAVLTGGSVLDWRPEDGTRIALVPRDGGPVRWTTHDAYWVWHFANAFDLPDGRVSVDYVEWTYPGGFAKAPSPSLGSLVRAVVDPGSGRVTREVVCDRDVEFPRVDDRELTRGHRTVGTVGKLDRSLGRQDSLWFFDTARGTEAHWDPGSVSVGEPIFMPGAEHEYWGMIGTDRADMSSWFFVLPAEVPGSGPIGKVRLPIRVPAGLHGAWLPAE
>NZ_CP041769.1|WP_005238257.1|2074060_2075323_-|pyridoxal-phosphate-dependent-aminotransferase
MTLVSNPDHGHHRMPHRKLEQSTKLQNVLYEIRGPVHAHAARLEAEGHRILKLNIGNPAPFGFDAPDVIMRDMIAALPYAQGYSESKGILSARRAIVTRYELVAGFPELDVDDIYLGNGVSELITMTMQALLDNGDEVLIPAPDYPLWTAMTSLAGGTPVHYLCDEGNDWNPDIADIESKITDKTKALLVINPNNPTGAVYSMEVLQQLVDLARKHQLLLLADEIYDKILYDDAKHISLATLAPDLLCLTFNGLSKAYRVAGYRSGWVAITGPKEHAAGFLEGLDLLASTRLCPNVPGQHAIQVALGGHQSIEDLILPGGRLLEQRDVAWERLNMIPGVSCVKPKGALYAFPRLDPNVYEIYDDEKLVQDLLLQEKILMVQGTGFNWPDHDHLRIVTLPWARDLAVAIERFGNFLTSYKQ
>NZ_CP041769.1|WP_144285590.1|2073284_2074004_-|helix-turn-helix-domain-containing-protein
MVTSTRARFGQFVHRRRRLLNLTQDEVTAAGGPSDAAQTRAENGTGPDPSIETLRKLDVALRWAPGSAARTLDGGHPTPLEALDGEDRSPTSRPLTLGPSEIPLDLDTIIEILGPHTQITKLSAAHPEVPGLAEAAGELSRVVSKITGAYVTRLLEVNGGPAGPRQPLVEFAFGHLLEEPSTVTDPRELEEARYRRFLYGRGDGLDAATRERFWRRWEDAVKLVATEDPERSGDAGVNA
>NZ_CP041769.1|WP_144285589.1|2072859_2073288_-|hypothetical-protein
MNGVPLSVRVNRLFSLAHDLDGPEPGEDTVAAGVSRILGRAVEPSEIESLRRNDHHAPEPDVLRAVAQHFHAPEQYLAADGYHDYDTLVRFKIAVREAGVRHLSMRSLDASAEPSTAEMESLIPLLENLRRSHGPAPDPRQT
>NZ_CP041769.1|WP_144285588.1|2071687_2072869_+|hypothetical-protein
MYEPPTYVSWPLLAVVWGTTLLRLALVRSTVAERRMNAALVFASLSLVLQRSLAQIWLDRWFGYGFANTLSNVCIILTAASLISLFSAWALGPARLPRIHVVSLSMCAVAGAILIGLSTPARSRGVAIADEGGWPFATYCITYAVPILSVALLNLWISLKAVRSATPGRERRVFLAVIALSLFEVFDMGVVVTTGVVNAVSEDNALTESHSDSGAFIRLLVVSAGALISVGPVVRALGHRWRSRQVTRRLQPMWRTLTGAVPEVVLELRPADRRALSARSRLDRMSVEIRDAIMILDRHVVFELGGHSGTAPPVVTATRLHLACLARRAGHRAHGRGGTAHLFTTDVGGEPWELARLADHWRDAEHLAAELWARRLPQFGGPADPSARVPAQV
>NZ_CP041769.1|WP_144285587.1|2071164_2071683_+|hypothetical-protein
MRISRQSRSSNHLRRIVAEMAIPVPWNRDQLVAGVAARRGRPIHLVPVSHALVQGGHSGLWLARADDDVILYAAGTSDVHATHIICHELAHMELGHDRDTIGDTTVDSTALSVAAPTVDTARVVKMLGRSNYSNDQEYEAELLATLIMAGRRAGTSGDTVGDARVSRMLGTF
>NZ_CP041769.1|WP_144285586.1|2069353_2070661_-|YibE/F-family-protein
MSEFHGHGHGHGHGHGHSDGPAPMGPVAAKVVVGLLVAIGVAVLIGAIALWPGKPSVDVEQPFQSAQGGAVVTESGTVTMQNIGDCGSPSAGRVFTGTPLPPPAGAYECQRSIVDIESGPNTGTQTLLEIIPGPGQPDLRVGEKIRLSRQTDVNGTTEYSFEDYARGLPVTLIALAFAVVVIAVARWRGFRALVGIVVSFGVLVLFTLPALLDGQPAIPVALVSGAVILYAVLYLAHGVSLRTSSALLGTLASMLVAAILSYATIEMTRLTGLSEEQNTNVQTYIQHVSITGLLLAGFIIGSLGVLNDVTITQAASAFELASLDPDASRRQIFGSAMRVGRDHIASTVYTLVLAYAGGALPLLLLFSVAGRSIQDVLLSDAVAIEIVRSAVGGIALALSVPLTTAIAVMLARPIGAGPSGSAPAVKPSRGGRHSK
>NZ_CP041769.1|WP_005253475.1|2069117_2069342_+|hypothetical-protein
MTANPAEFHSTPNVPRPSAAAPADTRRLVAYSKPILKMFPPTSEHAAKVTMLTVYALMVIAIIFIVLREFGVFS
>NZ_CP041769.1|WP_144285595.1|2083573_2084017_+|hypothetical-protein
MIVRKAAVTAGMAVAAMGLAAGVSHAGPVAAPAPAAPVPATAAPAVPSLPFHDVASREENDRAFAQFGAQVGIAVTVGSLVGTMAGAGIGCIATLPACLPGLVTGAGIGGVVGTIVAGGPTLGVSAYQLWETYNAAPGTSIYADRDE
>NZ_CP041769.1|WP_144285596.1|2084309_2084996_+|ammonium-transporter
MKLRRIVTTSALLVGVLATGSGVADAEPVAEPGTEIGYESHIEDRTVVTTLDAGAFALASDGKSVAIKDAGGATVVSLPLAYRFDGLQFPFEEEITEDGKTLRLTPSVDKAEATPISPEDRITPIALHDVASIDENTRAQSAFQQQLGIAMTVGSLGGTIVGGILGFAVGCVVGTPVAVFGCLPFGVTGAGIGALLGTIVVGGPTLAIAGIDLINTLNAPPGTTKWVK
>NZ_CP041769.1|WP_144285597.1|2085169_2085910_+|hypothetical-protein
MNLRRFTATSMLVVAAMGVGAATSYADPAAAPQPGAEQGIPNINYQTARDGDAAVATLDAGAFSINDANDTVDVVDDGGRVVASIPTFFRVDDLQHPFAVAVDESARVLRLVPNMDPSAATPVPVSERLTLDDVAAPQDKQERDDRALDDFQQQLGITSAITAIVAAIIGGAIGCAIGVIPGTAALVIPFLGLAGPVAGCIGGALIVAPVVALAGTIVVGGGALVVLGIQYFNTINSPFVAPEPTA
>NZ_CP041769.1|WP_144285598.1|2085906_2086608_+|hypothetical-protein
MSGRFARNLRAVTGAAFLVVAALGISAGTAHTAPLAQQDSSDIGYEAHTEGESVVTSIDAGAFRITGTREAIEVVDDSGKLVAVLPLTIRVGDAVYPIDADVDGRKVTLTPQVPADVASSVKSVAQEGFDTQEERDDSALADFNSYLGYATLIGGLIFGVIFGAVGLAVGCGLFAVTVIGTPVGCLGGLLAGFAAGGLAGTIFVGGAALVILGIQYLVTINTPFVPPAPEPTA
>NZ_CP041769.1|WP_144285599.1|2086639_2087173_+|NAD(P)H-dependent-oxidoreductase
MIVGSTREGRFAATVADWFVRAALDVIDLADVPLPVVVPAFGTDAEPAVAAVGARLAAADAFVVVTPEYHHSFPAVLKNAIDLFRDEWRAKPVGFVSYGGMGGGLRAVEQLRLVFAELHAVTVRDSVGFHGAGAVFDEHGEPLDPAVSSSAVKNMLDQIEWWGTTLRDARAVRPNAA
>NZ_CP041769.1|WP_144285600.1|2087240_2088551_-|protease
MRSSIARRAAVFGSAALLLLGPVAASAQADPVEPGVSGQAAKLPAELIDAIQRDLSLSPDQYLEHSELGQKLAEFAKIARIQFPDAFAGTWLDNAGTPIVGLADGADKDAAVAAAEKAGFQVKDVAQSESSLQAQVKSLDGWLDTQPPAVADLVRGVAIDIVNNDLVLRADNVGGLQLPDFLKGARVVQSPATAAPLPSTDLTPIAEPLPADALLGGDAYGSLGGGVGLRCSLGFNGTDSSGGPVNITAGHCDPNRDAAGTSEASEAFSLVPGGTGPRIGTFAKTSLDIHDYSIIRADDNAAHRFENNGVRVPGAAPVAITGTADPIVGAPVCKSGLTTGFTCGVVTSVAQTVSVGERTLADSFSTSMCALQGDSGGTIVTGTLALGISSASNVGQYPICQVADVVTFVLGESPELFATPINEVLAENPGLRVRTS
>NZ_CP041769.1|WP_005238294.1|2088790_2090110_-|protease
MRNVLAHRAAVVGASAMLLLFPFSTAAQADPVTQPDTTQLSADKLPAELVEAITRDLKISPQEYLDRAAKAQELGSYAEDFREQHPDDFAGAWIGLDGQPVVAVTTDEAADAAAKAGYDTRIAPVSANGLEKTLSDVNGWIAGLPKDVASQVNSASIDVLENRVVIDVVNSPIGQALNLPTLLANVKVMLSPGGGGPVERGPLAGDTYITTAGELPKTPISEISVCSLGFNAVDDSGQAVNISAGHCNPAEGQPSPVFLPNHQNVDDSQQIGAFSKSSVGNPADKLDYSVIKLNEAGVKAGLDRPAVRGANGTTLEITGTARPVVGAPICKSGQTSSFTCGVVAADHVETQLFVADGSSRVVNGFAGTACTLAGDSGGAIVTGTLALGITSGSNASGAPNCTEANLVLAPEGGTASLGIPVADIVDTIGSGMRVRTISD
>NZ_CP041769.1|WP_144285601.1|2090259_2091012_+|hypothetical-protein
MVVVVIAAAGSFIVVVVVVVVVVVVVVVVSGGVVVVVVVCGTVVIEGRVMTGVVEGGGGGTNTGVVSTGAGGGATGTGASTSVVTATSCVLAVGKTAGGACVGRALDVVTDAVWASRIVGTAVLPLPVSANASAPPATTSAAAATPAMISGRRFVRLAGGVGVLAGADASVSAGGYASAAAAAAAGTAVTAEYAVCIGASTTGIDSVSALVSSSVSASPAASSAAPWAGDSGEAASATDSGMRVASPRPM
>NZ_CP041769.1|WP_144285602.1|2091033_2091255_+|hypothetical-protein
MTISGAQSDGWVAVTFTVPDSPSAASRNRQNIAVATRSSARVSEPAYSIPAGSPTRARKSRTAPVDSVPGSPS
>NZ_CP041769.1|WP_144285603.1|2091533_2093477_-|LuxR-family-transcriptional-regulator
MSTLPSPLPPTELAELDGPQLSALALVLLGSDLDETVVARVLDVEPDSARAAVDALRADGWVDERDTLVHADRTHLTTTLGENRLTTLARRLLTHHVDGGTLTLPVARAVAATGTSSDELSRFLCAQAELAEPATAVALYAEAGRAGRLGDTAVVAYAEACALNGDLDTAVGLADSVLERSGTVDDAELAAAVRISAAGAAFCGMIDRSAELYAWLGADRAGADASLAASVLVVAGRLDDAEAVLATSAGAPPTAATAGAALVATGLVQSVTASANAALNSLTRALSLPGRASRPRVLPDSPAAITALAALHCGELAHADAVLARAREAEQPGSVTANRHQLLTAWTSMVRGDLTAAQSRLDGLDAASMRQRDLLFVHGLRVGLARRTGDNAALLQAWAGAQGVLAEYSVDLLSLLPLGELWLTSIRVGEPARITHLVEDAQSLLRTLGEPAMWGSALHWYGVQASILAECPTDLMPHARALGEAAQVSTYASGLATAGRAWLRVLQGDIDAASVEDAARTLDRIGLPWDGARLAGEAALRASDTRVATTLLQVARALRQPTSAGNGTDSAVVSSPSTPGSLTDREAEVAELLVQGLTYREIGSRLYISAKTIEHHVARIRRRLGAGSRSELLSMLRAMGHGYSADS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041769_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041769_4

5380153-5380313

Orphan

Consensus_repeat	Method
CGGGCTGATGACGTTCTCCCACACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP041769_4

>merge|NZ_CP041769|4|5380153-5380313|CRISPRCasFinder
CGGGCTGATGACGTTCTCCCACACGGCCTTGATGCCGTTACCGAGCCCTTCCCACACGGGCTTGATGACGTTCTCCCACACGGACGAGAAGAGTTCGCCGACGACGCCGAGCGCCGCCTTGAGCAGCTCCCAGGCAGGGCTGATGACGCTCTCCCACACCC

>NZ_CP041769|4|3|5380153-5380313|CRISPRCasFinder
CGGGCTGATGACGTTCTCCCACACGG	CCTTGATGCCGTTACCGAGCCCTTCCCACAC
GGGCTTGATGACGTTCTCCCACACGG	ACGAGAAGAGTTCGCCGACGACGCCGAGCGCCGCCTTGAGCAGCTCCCAGGC
AGGGCTGATGACGCTCTCCCACACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041769.1\|WP_144287452.1\|5371784_5372153_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287454.1\|5372892_5373150_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287464.1\|5386219_5386630_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287451.1\|5370885_5371785_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225720
NZ_CP041769.1\|WP_144287455.1\|5373139_5373955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287465.1\|5386629_5386959_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287466.1\|5386951_5387275_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287450.1\|5370376_5370889_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293550
NZ_CP041769.1\|WP_144287461.1\|5384407_5384779_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287458.1\|5375413_5376991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287460.1\|5383579_5384404_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287456.1\|5374021_5374417_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NZ_CP041769.1\|WP_144289155.1\|5376997_5377813_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287462.1\|5384775_5385090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227665
NZ_CP041769.1\|WP_144287469.1\|5388072_5389011_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287463.1\|5385210_5386143_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|310150
NZ_CP041769.1\|WP_144287457.1\|5375006_5375399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287468.1\|5387650_5388076_-\|lipase-chaperone	unknown	unknown	unknown
NZ_CP041769.1\|WP_144287453.1\|5372152_5372881_-\|lysis-protein	unknown	unknown	gnl\|CDD\|379241
NZ_CP041769.1\|WP_144287467.1\|5387276_5387636_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286444

Protein	Function_ID	Function_description	E-value
NZ_CP041769.1\|WP_144287462.1\|5384775_5385090_-\|hypothetical-protein	gnl\|CDD\|227665	COG5373, COG5373, Predicted membrane protein [Function unknown].	0.00100403
NZ_CP041769.1\|WP_144287451.1\|5370885_5371785_-\|hypothetical-protein	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	1.36789e-28
NZ_CP041769.1\|WP_144287456.1\|5374021_5374417_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	1.29563e-08
NZ_CP041769.1\|WP_144287463.1\|5385210_5386143_-\|hypothetical-protein	gnl\|CDD\|310150	pfam05345, He_PIG, Putative Ig domain. This alignment represents the conserved core region of ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to (pfam02494) and (pfam00801) suggest an Ig-like fold (personal obs:C. Yeats). So this family may be similar in function to the (pfam02639) and (pfam02638) domains. This domain is also found in the WisP family of proteins of Tropheryma whipplei.	1.86746e-07
NZ_CP041769.1\|WP_144287450.1\|5370376_5370889_-\|hypothetical-protein	gnl\|CDD\|293550	pfam16945, Phage_r1t_holin, Putative lactococcus lactis phage r1t holin. Phage_r1t_holin is a family of putative phage r1t holins from lactococcus. these holins carry two hydrophobic putative TMs separated by a short beta-turn region.	2.43677e-06
NZ_CP041769.1\|WP_144287453.1\|5372152_5372881_-\|lysis-protein	gnl\|CDD\|379241	pfam13529, Peptidase_C39_2, Peptidase_C39 like family.	2.79125e-10
NZ_CP041769.1\|WP_144287467.1\|5387276_5387636_-\|hypothetical-protein	gnl\|CDD\|286444	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42. This family of proteins are functionally uncharacterized. They are found in a variety of bacteriophage.	2.9976e-05

>NZ_CP041769.1|WP_144289155.1|5376997_5377813_-|hypothetical-protein
MIGWNGTPPYALGGPTRGRARDVWIEDGLAGLWVPAPRTPTRTSRAYQHGSTPKVTKIEERLLDFQVRIEGRTRSDLERAFADWMAVWSFDYDNEVITKTGSGPRSIRLRLDRDPKIVGRMSMQTTRISMEMVAVACWPYLTSGTEVKKWTPGTGSHTGTVLVDNPTDVPLWMKFEGTPATKWILPDGISGRTVPLKPQTTGWRVQTRQDFQTIRAAGGGFEVWKAMRGVTFMHEIPPGTPPTAIPVEVQGSTVPAELRIHLPRYHEMPWG
>NZ_CP041769.1|WP_144287458.1|5375413_5376991_-|hypothetical-protein
MSYNLDADLAAIDAQENEEAALALLRTRITMHDKYLALVGEVEGEYDASWETMCNEVGEASVGIDGRDDLADWLIDGLSLDHDMFLVFRSPWKKACFKVYDIEYDEDEHGEAIVRPLARHILDEAKHWQCWPNTFAPLTVQAPKIDFQAGNSIKVIKGYAHRNLLRQQQPLWIPFFDIWNAANWQANFDNAKWPMMMIPYIESRDGVGPWTALGARMDDFWDLVHPTLEDGGLQLTADLWEPGDPQPCPTHFILDRPTFVFDVKKRAMIPGVTGTILDPILDLLRIFGSDGTSDTVTIADPNDDPNNTDPNGPFAIFRRGQHRGLKSKMVIHKPIEHSIMTGGKSPDSINQGAKLISNILLGLLGSAIGLPWLTLGIFDKAVEDIILAWAIGIDYQRKARMGPYSHKGGFEAGGGVAVSPSGLQTIRVGLHKARGYVSFAAEVDDAAPYRIGLHIDDGHRCGFEIGNRIWLSHIASVRQSWDRANPDQPWEINVGDYRSEELAGTRALRGLEAVSSALRQHSSAI
>NZ_CP041769.1|WP_144287457.1|5375006_5375399_-|hypothetical-protein
MTPEELQAALPATMHPYAYALMHPPTNGAGSAPATFEPDDINSFCRHLERLGFRPVEASLDRYDPPITGPIHPHNPGQWRSKKMPEPKRADPYAHIRAQLAVLPGHAQAELLREAMEEPSTTTSPPEEDS
>NZ_CP041769.1|WP_144287456.1|5374021_5374417_+|hypothetical-protein
MIEVPGPLPPPPPPGNAPVPPSLNPAAPPPPPPPPVATTVAGGVPLFPAPDAVAAPPGDTPPAPPAPPVTPKPPPPPPPPPPPPFSEYGDTDPWPVVFWTSAAGSCPPSACPLPPRPPGIMPIPPAPPVAP
>NZ_CP041769.1|WP_144287455.1|5373139_5373955_-|hypothetical-protein
MGRVNMIVFTTNDTWTKPPDLAAIEVIVRGAGGGGATGTANNTTTARFGGAGGGGGGCVRTQRRIDAASLPDTIPVEIGPGGWGGLSAPLGGGWSPGGNGADTLFGDVLRGKGGTGAPDPFTAGTGGLSVIRGGDGGAQGANGGDSTHGVISLLSGGGGGGAGRGYRQNGTVIPSDTDHGYGGDVSTLDFQGGSIGGSGTSYVTASNLWVIVGSGTGGGGGAYNASGAGGTAGNGGFPAGGGGGGGGGSTVGGKGGIGGHGSVIVFEYFND
>NZ_CP041769.1|WP_144287454.1|5372892_5373150_+|hypothetical-protein
MISDSGHRSWQFVHHDRTAIGPCRNDQRFRLPEPFDGEDDDIIVRLPLDPIGQWRRQSVQVRDTGIPADVGTDLCCSRHDVPFSH
>NZ_CP041769.1|WP_144287453.1|5372152_5372881_-|lysis-protein
MGSRRIRTRRALRNRHSRARARARARARARRRGGEGVMLILDHTYSTQETGYNCGPASSQIVLTARGIDVAESQLAYELEALEGNVGWNDQDGTDSIVQVTTVLGRRTGQPYVTRQIPNDPPTGAQVDLLRSDVKRSIDGGNGVVANIVAPASNHPPGYPNYTVYHYIAIVGYDDVQGVYVADPANFGGIHNYWLSWEKIASLIAPKGYSAAPVERPAAPANEDDDDAAWLPILTQFVGPVA
>NZ_CP041769.1|WP_144287452.1|5371784_5372153_-|hypothetical-protein
MAQKPWCYLDVPALTKPDLASVLVREVLDESPYLVGSCLERADYRDVDIRVLLDDERYDALFPRPGSDPLRHLIEDRLTDHYVAMTGLRVDFQIQRQSNANEKYRGVRHPLALYLHLPDEED
>NZ_CP041769.1|WP_144287451.1|5370885_5371785_-|hypothetical-protein
MDGQILAEAMGNQPGVDYDALAGPCNEAMIIADVTTALRAMLWCAQIGHESVGLAFFRELWGPTSDQLTYDGRLGNVNPGDGYRYRGRGAIQLTGRSNYRSFGEWAAQRGLTSDPALFENNPDLVAEPRWGFVAAAYYWVTRDLNRFAANREVTNSTHVINGGENGLADRINRYNRCFPLGDRLLPEQEREIMGAVADRVETQLVGPNGQGFEILGKAVETDPTRYRFLTEAVAVILEQLGGPTSENGESFGGWDQLGDGEGSAVAARTLVDGIAHVKNQNDQILAQQAEILKALKGGN
>NZ_CP041769.1|WP_144287450.1|5370376_5370889_-|hypothetical-protein
MIMAEEQNFIPVVVEATVDMGSLDSRTFWLDALDRAGRSFLQNILVFFGAGVTIVSVSWSTLLGAAALAALVSLVLAVSTATAVTSGNFLVDLADRAVRTGAGSLAAAIPVTGSITDIDWPSSLTIAGTTVLLSVVTSLLTENRGPAKGLPTLAPVDGEVIEVTDTELDA
>NZ_CP041769.1|WP_144287460.1|5383579_5384404_-|hypothetical-protein
MTDDNGSVASYFETLLGEAAGPFVVHLDDDGPELVIGVPAAADVADLDTTASVHDLLDLLVGEELADVIADHFARRPISELADLVDDIREHFGILIPPDTGWAYLVSEIDRYGDAIEKDFFAMPGDERLYDWVRDHLDNPWNRLLRLLSALPEGGWYYAAIADDDERAMQRLEMEQRGELPKPSKRPSLVGWTHDRELLTEAVESLAQILHGVWGASPKFKGKGGKPPGRRPRPQTARDRAEEYQALVEHDDISSQVLGGRYKRRIQPQEVFNG
>NZ_CP041769.1|WP_144287461.1|5384407_5384779_-|hypothetical-protein
MSKDLDNVTQIDDPNVRRYGGEQREPKEPFKFQVGESPTFLVPEPDSDTVMDIEEAQTSRRVLKLFLGDQYEDVVDYLGPTHPDTLIDLARDLSRHFGLFDTEQAVNRADRRSRDRRRAGRRR
>NZ_CP041769.1|WP_144287462.1|5384775_5385090_-|hypothetical-protein
MGHMRTINKADWTPTPLVSPKGHLYTPSSYVEHKQLVASGYRPAPAPVPAEPEPAPDPTAPAVPPVVPEAPAELSEKSTDDEPADTPAEAPKTKTTRRTTGGAQ
>NZ_CP041769.1|WP_144287463.1|5385210_5386143_-|hypothetical-protein
MVSDIGQLEVSRHQRELILKPNRAHIYGMGMDIDPIESITEGSNSLLAELPEGAWDFGLLLKDDAITLTRELEKSDISAIGYSNPVRSDFISDIAGLQFTGLEANRYNIENNLGVDLSQMLADPETGEIAFDQPAITAIRQQRYLALSQFNTGEDRIFLGRLFYAGEVSEMGEQTLSDGEGSLTWPTTVNAMVDTDHGVAVRHYFGGPGWNRVLEDAGFKRGGLTITTASLPGGTVSSAYSQTLTVTGGTGTKTWTVATGTLPAGLTLAASTGVISGTPTAAGTSNFTVQVVDSVTPGSVQKPLSIVVAA
>NZ_CP041769.1|WP_144287464.1|5386219_5386630_-|hypothetical-protein
MVVAVDDTLFPDIEEVLMVYLAPLGETDTEPPVDDDGIGIEVHRAGGADDGISDYPRVQIICHHPDPRGASKLARRVRNLMDRIPGEAIEVEDEPGPVCVDSCRVDTPPETEPYENPDARQQVAYYALSLQKPWRR
>NZ_CP041769.1|WP_144287465.1|5386629_5386959_-|hypothetical-protein
MADPKPGSYRFSSKDAKAIMRSQHVQKATRRMAEVGVRAFKAEARRHRKTGKLADQVRIEPARGWDGRPGQRIVASRSGNQPALFGTRRSKSVRASEAAIRAMRQKRRY
>NZ_CP041769.1|WP_144287466.1|5386951_5387275_-|hypothetical-protein
MDELGNQTVRVIERVRGKRGVMTEQPGAEFPGCSVQPVDSVEGVPIERHTRWALFAPPGFPESTENVLAVDGIGPRLHVDGDLQTWYDDDGIADHVWGYLERWVSSG
>NZ_CP041769.1|WP_144287467.1|5387276_5387636_-|hypothetical-protein
MADFVTVSDVVTGWRPLTAAEGPWAPQLIAAASMWIRDPNRRPDIADNDPAARFVVIEVVRAALTAAKHAGHVSYSKTVGGVTRSGTLANPGRSLVFTEYHHQLLGISRSAKPSWTFGD
>NZ_CP041769.1|WP_144287468.1|5387650_5388076_-|lipase-chaperone
MTEYTLTAVRFDQILERDNQGRPIKVVKYRRGDVITDLDELEAQRLLKAGALAEVAEVADPTEPEDGDDGEGDQTGTPTAVGTEVPTTVNQSGTDQPRKPRVTATVEKWLAYAKSIGLTGEAVDGKDKDELIALVEAAEQK
>NZ_CP041769.1|WP_144287469.1|5388072_5389011_-|hypothetical-protein
MATRTVVSGSDGAALAVADFLANPLLIPTKLKKLLENQFIAEALLRNAGANTSGIFAYTEGDPSFLIDDIDELAEFSEIAVSNAARGIPKVVFSTKRGKGVRVTLDMIRKNQIDDVNKQVTALKNSFIRTNDRAAKAVLGNIPTFPVSTAWDVTNSRPRRDIADAIFEISQAAPTVNEGGSDDEGYEFAADTIVMNPALMPILMDNDDLLKVYRGNIADQNIAYVGALPETIHNLQIIVSRAWPTDRALILERGTVGFYGDARPLTFTELYPEGNGPNGGPRETWRSDATQERGMALDQPKAGLWLTGLVTP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041769_3	3.1\|2080343\|17\|NZ_CP041769\|CRISPRCasFinder	2080343-2080359	17	NZ_CP041769.1	2080175-2080191	0	1.0

1. spacer 3.1|2080343|17|NZ_CP041769|CRISPRCasFinder matches to position: 2080175-2080191, mismatch: 0, identity: 1.0

cccttcatctgcagacc	CRISPR spacer
cccttcatctgcagacc	Protospacer
*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041769_3	3.4\|2080496\|29\|NZ_CP041769\|CRISPRCasFinder	2080496-2080524	29	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	591957-591985	6	0.793
NZ_CP041769_3	3.4\|2080496\|29\|NZ_CP041769\|CRISPRCasFinder	2080496-2080524	29	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1370768-1370796	6	0.793
NZ_CP041769_3	3.4\|2080496\|29\|NZ_CP041769\|CRISPRCasFinder	2080496-2080524	29	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	41244-41272	7	0.759
NZ_CP041769_3	3.4\|2080496\|29\|NZ_CP041769\|CRISPRCasFinder	2080496-2080524	29	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	155216-155244	7	0.759
NZ_CP041769_2	2.1\|636343\|34\|NZ_CP041769\|CRT	636343-636376	34	NZ_CP014797	Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence	58960-58993	8	0.765
NZ_CP041769_2	2.1\|636343\|34\|NZ_CP041769\|CRT	636343-636376	34	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	409086-409119	9	0.735

1. spacer 3.4|2080496|29|NZ_CP041769|CRISPRCasFinder matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 6, identity: 0.793

cctgccatgccgagccccttgccgggtgc	CRISPR spacer
ccccccatgccgagcaccttgccggacgt	Protospacer
**. *********** *********..*.

2. spacer 3.4|2080496|29|NZ_CP041769|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cctgccatgccgagccccttgccgggtgc-	CRISPR spacer
acttccatgccgagcgccttgcc-gacgcg	Protospacer
 ** *********** ******* *..**

3. spacer 3.4|2080496|29|NZ_CP041769|CRISPRCasFinder matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 7, identity: 0.759

cctgccatgccgagccccttgccgggtgc	CRISPR spacer
accgccatgccgatccgcttgccgggcag	Protospacer
 *.********** ** *********..

4. spacer 3.4|2080496|29|NZ_CP041769|CRISPRCasFinder matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.759

cctgccatgccgagccccttgccgggtgc	CRISPR spacer
accgccatgccgatccgcttgccgggcag	Protospacer
 *.********** ** *********..

5. spacer 2.1|636343|34|NZ_CP041769|CRT matches to NZ_CP014797 (Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence) position: , mismatch: 8, identity: 0.765

tccctggggcggcggcgggtaattgccctgcggc	CRISPR spacer
ggcgcccggcggcggcgggtagttgccctgccgc	Protospacer
  * .  **************.********* **

6. spacer 2.1|636343|34|NZ_CP041769|CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 9, identity: 0.735

tccctggggcggcggcgggtaattgccctgcggc	CRISPR spacer
agcgccgggcggcggcggataattgccctgtcgt	Protospacer
  * . ************.***********. *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5329918 : 5412684

Rhodococcus_phage(48.0%)

terminase,lysis,protease,integrase

attL 5361570:5361605|attR 5412727:5412762

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005248181.1\|5329918_5331199_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.6e-141	59.3
WP_144287429.1\|5331224_5331443_-	hypothetical protein	NA	NA	NA	NA
WP_005264334.1\|5331439_5332102_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A248SJ97	Salicola_phage	1.3e-27	37.7
WP_005264333.1\|5332150_5332738_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.5e-43	48.9
WP_005264332.1\|5332922_5334317_-	trigger factor	NA	NA	NA	NA
WP_144287430.1\|5335745_5336543_-	Fpg/Nei family DNA glycosylase	A0A1V0CNR6	Kaumoebavirus	6.9e-10	25.5
WP_005248193.1\|5336549_5337023_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_144287431.1\|5337090_5338065_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_141467225.1\|5338083_5338713_-	DsbA family protein	NA	NA	NA	NA
WP_144287432.1\|5338842_5340078_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	9.3e-06	27.5
WP_144287433.1\|5340150_5342754_+	aminopeptidase N	A0A2K9L1R3	Tupanvirus	1.5e-45	32.4
WP_144287434.1\|5342775_5344002_-	DNA polymerase IV	A0A218MNF2	uncultured_virus	1.4e-17	27.4
WP_144287435.1\|5344039_5344888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144287436.1\|5344945_5345362_+	SRPBCC family protein	NA	NA	NA	NA
WP_005264322.1\|5345435_5345915_-	DUF5130 domain-containing protein	NA	NA	NA	NA
WP_005248217.1\|5345901_5346162_-	hypothetical protein	NA	NA	NA	NA
WP_144287437.1\|5346237_5346819_-	HNH endonuclease	H6WG01	Cyanophage	1.9e-17	35.5
WP_005264320.1\|5347049_5347445_+	globin	NA	NA	NA	NA
WP_144287438.1\|5347512_5349108_+	DUF3459 domain-containing protein	NA	NA	NA	NA
WP_144287439.1\|5349095_5350007_+	EamA family transporter	NA	NA	NA	NA
WP_144287440.1\|5350014_5350701_-	hypothetical protein	NA	NA	NA	NA
WP_005264316.1\|5350693_5351119_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_144287441.1\|5351115_5356017_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_037207361.1\|5356124_5356550_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_005264313.1\|5356551_5358231_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	3.0e-47	27.4
WP_144287442.1\|5358364_5358793_-	single-stranded DNA-binding protein	K4HZ13	Streptomyces_phage	1.4e-14	39.5
WP_144287443.1\|5358961_5360992_-	copper resistance protein CopD	NA	NA	NA	NA
WP_005264310.1\|5361096_5361474_+	DUF4345 domain-containing protein	NA	NA	NA	NA
5361570:5361605	attL	NA	NA	NA	NA
WP_144287444.1\|5362216_5363029_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_144287445.1\|5363585_5363804_-	hypothetical protein	NA	NA	NA	NA
WP_144287446.1\|5364213_5364510_+	hypothetical protein	A0A142KB66	Gordonia_phage	2.8e-09	72.2
WP_144287447.1\|5364516_5365941_+	hypothetical protein	NA	NA	NA	NA
WP_144287448.1\|5369515_5369833_-	hypothetical protein	NA	NA	NA	NA
WP_144287449.1\|5369877_5370384_-	hypothetical protein	NA	NA	NA	NA
WP_144287450.1\|5370376_5370889_-	hypothetical protein	M9MU75	Rhodococcus_phage	7.0e-08	33.3
WP_144287451.1\|5370885_5371785_-	hypothetical protein	A7IYC3	Corynebacterium_phage	1.2e-50	55.8
WP_144287452.1\|5371784_5372153_-	hypothetical protein	B2ZY33	Ralstonia_phage	1.7e-11	35.3
WP_144287453.1\|5372152_5372881_-\|lysis	lysis protein	G9FH99	Rhodococcus_phage	1.5e-35	47.6
WP_144287454.1\|5372892_5373150_+	hypothetical protein	NA	NA	NA	NA
WP_144287455.1\|5373139_5373955_-	hypothetical protein	NA	NA	NA	NA
WP_144287456.1\|5374021_5374417_+	hypothetical protein	NA	NA	NA	NA
WP_144287457.1\|5375006_5375399_-	hypothetical protein	NA	NA	NA	NA
WP_144287458.1\|5375413_5376991_-	hypothetical protein	G9FH45	Rhodococcus_phage	2.7e-228	71.9
WP_144289155.1\|5376997_5377813_-	hypothetical protein	G9FH44	Rhodococcus_phage	6.2e-83	58.2
WP_144287459.1\|5377827_5383587_-	transglycosylase SLT domain-containing protein	G9FH43	Rhodococcus_phage	5.5e-210	50.9
WP_144287460.1\|5383579_5384404_-	hypothetical protein	G9FH42	Rhodococcus_phage	3.0e-93	63.9
WP_144287461.1\|5384407_5384779_-	hypothetical protein	G9FH41	Rhodococcus_phage	4.4e-44	70.5
WP_144287462.1\|5384775_5385090_-	hypothetical protein	G9FH40	Rhodococcus_phage	5.6e-08	60.0
WP_144287463.1\|5385210_5386143_-	hypothetical protein	G9FH37	Rhodococcus_phage	1.6e-127	75.6
WP_144287464.1\|5386219_5386630_-	hypothetical protein	G9FH36	Rhodococcus_phage	1.2e-55	75.4
WP_144287465.1\|5386629_5386959_-	hypothetical protein	G9FH35	Rhodococcus_phage	2.0e-32	69.7
WP_144287466.1\|5386951_5387275_-	hypothetical protein	G9FH34	Rhodococcus_phage	1.8e-41	74.0
WP_144287467.1\|5387276_5387636_-	hypothetical protein	G9FH33	Rhodococcus_phage	1.6e-27	54.1
WP_144287468.1\|5387650_5388076_-	lipase chaperone	G9FH32	Rhodococcus_phage	4.2e-22	50.7
WP_144287469.1\|5388072_5389011_-	hypothetical protein	G9FH31	Rhodococcus_phage	7.5e-165	91.7
WP_144287470.1\|5389036_5389477_-	hypothetical protein	G9FH30	Rhodococcus_phage	4.1e-49	73.3
WP_144287471.1\|5389478_5390705_-	hypothetical protein	G9FH29	Rhodococcus_phage	1.1e-179	81.0
WP_144287472.1\|5390685_5392002_-	hypothetical protein	G9FH28	Rhodococcus_phage	1.8e-225	89.8
WP_144287473.1\|5392009_5393530_-\|terminase	terminase	G9FH27	Rhodococcus_phage	1.4e-253	85.4
WP_144287474.1\|5393501_5393852_-	hypothetical protein	G9FH26	Rhodococcus_phage	6.2e-40	76.7
WP_144287475.1\|5393987_5394353_-	hypothetical protein	G9FH25	Rhodococcus_phage	6.2e-51	73.3
WP_144287476.1\|5394710_5394947_-	hypothetical protein	NA	NA	NA	NA
WP_144287477.1\|5395410_5396103_-	hypothetical protein	G9FH77	Rhodococcus_phage	4.8e-36	44.9
WP_144287478.1\|5396242_5396524_-	NrdH-redoxin	X2KRY7	Enterococcus_phage	1.6e-06	46.2
WP_144287479.1\|5396520_5396943_-	hypothetical protein	A0A166Y0Y6	Gordonia_phage	3.0e-41	61.3
WP_144287480.1\|5396939_5397179_-	hypothetical protein	NA	NA	NA	NA
WP_144287481.1\|5397423_5397783_-	hypothetical protein	G9FH13	Rhodococcus_phage	1.5e-41	65.3
WP_144287482.1\|5397783_5397999_-	hypothetical protein	NA	NA	NA	NA
WP_144287483.1\|5398153_5398504_-	hypothetical protein	NA	NA	NA	NA
WP_144287484.1\|5398500_5398806_-	hypothetical protein	G1DTT6	Mycobacterium_virus	2.0e-18	56.1
WP_144287485.1\|5398808_5399573_-	hypothetical protein	A0A1B3AYI7	Gordonia_phage	3.5e-35	38.7
WP_144287486.1\|5399569_5400031_-	hypothetical protein	A0A1B3AZJ2	Gordonia_phage	5.7e-25	41.4
WP_144287487.1\|5400027_5400357_-	hypothetical protein	NA	NA	NA	NA
WP_144287488.1\|5400469_5401567_-	hypothetical protein	A0A1B3B1U8	Gordonia_phage	6.6e-104	59.8
WP_144287489.1\|5401610_5402465_-	recE	A0A1B3B1R5	Gordonia_phage	1.4e-72	49.8
WP_144287490.1\|5402461_5402785_-	hypothetical protein	NA	NA	NA	NA
WP_144287491.1\|5402784_5403387_-	hypothetical protein	A0A249XQ08	Mycobacterium_phage	2.5e-44	48.8
WP_144287492.1\|5403383_5403770_-	hypothetical protein	NA	NA	NA	NA
WP_144287493.1\|5403766_5404132_-	hypothetical protein	NA	NA	NA	NA
WP_144287494.1\|5404128_5404368_-	hypothetical protein	NA	NA	NA	NA
WP_144287495.1\|5404364_5404559_-	hypothetical protein	NA	NA	NA	NA
WP_144287496.1\|5404672_5404885_+	hypothetical protein	NA	NA	NA	NA
WP_144289156.1\|5405035_5405224_+	hypothetical protein	NA	NA	NA	NA
WP_144287497.1\|5405358_5405592_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144287498.1\|5405588_5405870_-	hypothetical protein	NA	NA	NA	NA
WP_144287499.1\|5405866_5406721_-	hypothetical protein	A0A1L6BZH6	Pasteurella_phage	8.6e-35	56.0
WP_144287500.1\|5406689_5406962_-	helix-turn-helix domain-containing protein	A0A2H4PEX6	Gordonia_phage	2.9e-21	58.9
WP_144287501.1\|5407177_5408335_+	hypothetical protein	A0A142KAZ8	Gordonia_phage	2.9e-17	39.0
WP_144287502.1\|5408463_5408895_+	hypothetical protein	A0A088FBM4	Mycobacterium_phage	4.5e-24	43.7
WP_144287503.1\|5409242_5410397_+	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_144287504.1\|5410393_5411140_-	DUF5131 family protein	A0A2P1A0W3	Gordonia_phage	1.2e-61	43.6
WP_144287505.1\|5411418_5412684_+\|integrase	tyrosine-type recombinase/integrase	G9FH48	Rhodococcus_phage	1.3e-92	46.4
5412727:5412762	attR	NA	NA	NA	NA

DBSCAN-SWA_2

7437348 : 7480345

Staphylococcus_phage(33.33%)

transposase,integrase

attL 7440018:7440036|attR 7489371:7489389

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144289174.1\|7437348_7438473_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_054246209.1\|7438626_7438959_+	hypothetical protein	NA	NA	NA	NA
WP_144288759.1\|7438987_7439764_-	cyclase family protein	NA	NA	NA	NA
WP_144288760.1\|7439811_7440960_-	NAD(P)-binding protein	NA	NA	NA	NA
7440018:7440036	attL	NA	NA	NA	NA
WP_144288761.1\|7441079_7442075_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_144288762.1\|7442280_7443213_+	oxidoreductase	NA	NA	NA	NA
WP_144288763.1\|7443274_7444087_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_144288764.1\|7444195_7445374_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_144289256.1\|7446493_7447663_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.1e-31	30.9
WP_144288765.1\|7448609_7448861_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	3.8e-15	56.2
WP_144288766.1\|7450082_7450328_-	hypothetical protein	NA	NA	NA	NA
WP_144288767.1\|7450981_7452070_+	alkene reductase	NA	NA	NA	NA
WP_144288768.1\|7452137_7452989_+	alpha/beta fold hydrolase	A0A1L7N183	Ralstonia_phage	2.9e-06	26.4
WP_144288769.1\|7453141_7453819_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_144288770.1\|7454480_7456064_-	AMP-binding protein	A0A1V0SBX8	Catovirus	1.2e-21	26.9
WP_144288771.1\|7456078_7457320_-	NADH:flavin oxidoreductase/NADH oxidase family protein	NA	NA	NA	NA
WP_144288772.1\|7457860_7458355_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_144288773.1\|7458906_7459134_-	hypothetical protein	NA	NA	NA	NA
WP_144288774.1\|7459418_7460405_-	acryloyl-CoA reductase	NA	NA	NA	NA
WP_144288775.1\|7460460_7461294_-	mycofactocin-coupled SDR family oxidoreductase	NA	NA	NA	NA
WP_144288776.1\|7461304_7462120_-	mycofactocin-coupled SDR family oxidoreductase	NA	NA	NA	NA
WP_144288777.1\|7462235_7464134_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	3.1e-53	31.4
WP_144288778.1\|7464130_7465204_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_144284664.1\|7465558_7467454_-	AMP-binding protein	NA	NA	NA	NA
WP_144288779.1\|7467568_7468264_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_144288780.1\|7468265_7469432_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_144288781.1\|7469533_7470004_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_144288782.1\|7469908_7470766_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_144288783.1\|7471283_7472129_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_144288784.1\|7472125_7473028_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_144288785.1\|7473027_7474284_-	NADH:flavin oxidoreductase/NADH oxidase family protein	NA	NA	NA	NA
WP_144288786.1\|7474368_7474953_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_144288787.1\|7475315_7475777_-\|transposase	transposase	NA	NA	NA	NA
WP_144288788.1\|7476027_7476312_-\|transposase	transposase	NA	NA	NA	NA
WP_144288789.1\|7477475_7479299_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_144288790.1\|7479295_7480345_-\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	4.2e-07	26.6
7489371:7489389	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041769

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection