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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041926 Klebsiella aerogenes strain Ka37751 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP041925 Klebsiella aerogenes strain Ka37751 chromosome, complete genome 4 crisprs csa3,cas3,DEDDh,DinG,WYL 2 1 3 0

Results visualization

1. NZ_CP041925
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041925_1 994197-994315 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041925_2 1599205-1599338 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041925_3 2899095-2899219 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041925_4 3535124-3535198 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP041925_1 1.1|994228|57|NZ_CP041925|CRISPRCasFinder 994228-994284 57 NZ_CP041925.1 4810435-4810491 2 0.965
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP041925.1 978590-978614 2 0.92
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP041925.1 4341741-4341765 2 0.92

1. spacer 1.1|994228|57|NZ_CP041925|CRISPRCasFinder matches to position: 4810435-4810491, mismatch: 2, identity: 0.965

aatcctcccccggtggcgcttacgcttaccggggctaccaaccgactaccgaaccgt	CRISPR spacer
aatcctcccccggtggcgcttacgcttaccggggctaccgaccgaataccgaaccgt	Protospacer
***************************************.***** ***********

2. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to position: 978590-978614, mismatch: 2, identity: 0.92

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
acaaaaaaacggcaccgcgagtagc	Protospacer
***********.*******.*****

3. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to position: 4341741-4341765, mismatch: 2, identity: 0.92

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
acaaaaaaacggcgccgcgggtagc	Protospacer
***********.*.***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 324018-324042 1 0.96
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 LR134122 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2 447529-447553 2 0.92
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP040905 Enterococcus faecium strain N56454 plasmid unnamed, complete sequence 30682-30706 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP011829 Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence 168508-168532 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_LN999988 Enterococcus faecium isolate EFE11651 plasmid II, complete sequence 118628-118652 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP018129 Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence 70654-70678 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_LR135288 Enterococcus faecium isolate E7199 plasmid 2 130312-130336 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 MT074686 Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence 94146-94170 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_LR135783 Enterococcus faecium isolate E4239 plasmid 2 116808-116832 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_AP019395 Enterococcus faecium strain QU 50 plasmid pQL50, complete sequence 125781-125805 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP014530 Enterococcus faecium strain E745 plasmid pl1, complete sequence 147161-147185 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_LR135171 Enterococcus faecium isolate E4227 plasmid 2 119459-119483 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NC_020208 Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence 179730-179754 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP034945 Enterococcus faecium strain NM213 plasmid unnamed2, complete sequence 29447-29471 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 NZ_CP034948 Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence 132249-132273 3 0.88
NZ_CP041925_4 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder 3535149-3535173 25 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 323588-323612 5 0.8

1. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 1, identity: 0.96

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
acaaaaaaacggcaccgcgggtagc	Protospacer
***********.*************

2. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 2, identity: 0.92

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
acaaaaaaacggcaccgcgagtagc	Protospacer
***********.*******.*****

3. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_CP040905 (Enterococcus faecium strain N56454 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

4. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_CP011829 (Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

5. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_LN999988 (Enterococcus faecium isolate EFE11651 plasmid II, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

6. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_CP018129 (Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

7. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_LR135288 (Enterococcus faecium isolate E7199 plasmid 2) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

8. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

9. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_LR135783 (Enterococcus faecium isolate E4239 plasmid 2) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

10. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_AP019395 (Enterococcus faecium strain QU 50 plasmid pQL50, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

11. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_CP014530 (Enterococcus faecium strain E745 plasmid pl1, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

12. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_LR135171 (Enterococcus faecium isolate E4227 plasmid 2) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

13. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

14. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_CP034945 (Enterococcus faecium strain NM213 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

15. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to NZ_CP034948 (Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.88

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gcaaaaaaatgacacagcgggtagc	Protospacer
.********.***** *********

16. spacer 4.1|3535149|25|NZ_CP041925|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.8

acaaaaaaacgacaccgcgggtagc	CRISPR spacer
gacaaaaaacggcaccgcgggtaga	Protospacer
.  ********.************ 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1490912 : 1573870 74 Enterobacterial_phage(18.75%) terminase,portal,integrase,transposase,lysis,protease,tail attL 1528079:1528130|attR 1573967:1574018
DBSCAN-SWA_2 2149555 : 2197151 62 Escherichia_phage(19.61%) terminase,coat,integrase,holin,tail attL 2144497:2144513|attR 2160202:2160218
DBSCAN-SWA_3 2291968 : 2297322 6 Escherichia_phage(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage