CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041933	Pseudomonas sp. BJP69 chromosome, complete genome	2 crisprs	DEDDh,RT,cas3,csa3,WYL,DinG,PD-DExK	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041933_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041933_1

1491622-1491780

Orphan

Consensus_repeat	Method
TTCATACGGCGCGACATTGAGGCATGCGCCAAAGGGTTCGCGCGCAAATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041933_1

>merge|NZ_CP041933|1|1491622-1491780|CRISPRCasFinder
TTCATACGGCGCGACATTGAGGCATGCGCCAAAGGGTTCGCGCGCAAATCCCACAGGCATAATTGGCCCGAAACAAACGTAGGAGCGAGCGCAGCTCGCGATGCTGTTTCATACGGCGCGACATTGAGGCATGCGCCAAAGGGTTCGCGCGCGAATCCC

>NZ_CP041933|1|1|1491622-1491780|CRISPRCasFinder
TTCATACGGCGCGACATTGAGGCATGCGCCAAAGGGTTCGCGCGCAAATCCC	ACAGGCATAATTGGCCCGAAACAAACGTAGGAGCGAGCGCAGCTCGCGATGCTGT
TTCATACGGCGCGACATTGAGGCATGCGCCAAAGGGTTCGCGCGCGAATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041933.1\|WP_009686813.1\|1497835_1498297_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041933.1\|WP_029886178.1\|1499697_1499934_-\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP041933.1\|WP_144187867.1\|1495134_1497465_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NZ_CP041933.1\|WP_029886570.1\|1481362_1482454_+\|NADH:flavin-oxidoreductase/NADH-oxidase	unknown	unknown	gnl\|CDD\|239242
NZ_CP041933.1\|WP_009686815.1\|1493893_1494898_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|237364
NZ_CP041933.1\|WP_054881637.1\|1501936_1503070_+\|ribonuclease-D	unknown	unknown	gnl\|CDD\|130455
NZ_CP041933.1\|WP_144187863.1\|1490475_1491363_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP041933.1\|WP_125855104.1\|1498389_1499571_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NZ_CP041933.1\|WP_144187857.1\|1486699_1487626_-\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|172473
NZ_CP041933.1\|WP_029886569.1\|1482725_1483982_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|334462
NZ_CP041933.1\|WP_054881638.1\|1500186_1501824_+\|phosphoethanolamine--lipid-A-transferase	unknown	unknown	gnl\|CDD\|183224
NZ_CP041933.1\|WP_144187865.1\|1492973_1493873_-\|bestrophin	unknown	unknown	gnl\|CDD\|376448
NZ_CP041933.1\|WP_144187859.1\|1487712_1489329_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP041933.1\|WP_009683314.1\|1485707_1486655_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
NZ_CP041933.1\|WP_009686808.1\|1503066_1503360_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225642
NZ_CP041933.1\|WP_009681756.1\|1479249_1480887_+\|malate-dehydrogenase-(quinone)	unknown	unknown	gnl\|CDD\|179979
NZ_CP041933.1\|WP_029886571.1\|1480977_1481313_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968
NZ_CP041933.1\|WP_009681692.1\|1491989_1492529_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NZ_CP041933.1\|WP_144187855.1\|1483984_1485562_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143447
NZ_CP041933.1\|WP_144187861.1\|1489705_1490488_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117

Protein	Function_ID	Function_description	E-value
NZ_CP041933.1\|WP_009686813.1\|1497835_1498297_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.16425e-54
NZ_CP041933.1\|WP_029886178.1\|1499697_1499934_-\|YdcH-family-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	1.59086e-06
NZ_CP041933.1\|WP_144187867.1\|1495134_1497465_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NZ_CP041933.1\|WP_029886570.1\|1481362_1482454_+\|NADH:flavin-oxidoreductase/NADH-oxidase	gnl\|CDD\|239242	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.	0
NZ_CP041933.1\|WP_009686815.1\|1493893_1494898_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|237364	PRK13361, PRK13361, GTP 3',8-cyclase MoaA.	0
NZ_CP041933.1\|WP_054881637.1\|1501936_1503070_+\|ribonuclease-D	gnl\|CDD\|130455	TIGR01388, Ribonuclease_D, ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown. [Transcription, RNA processing].	4.89261e-147
NZ_CP041933.1\|WP_144187863.1\|1490475_1491363_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.71095e-35
NZ_CP041933.1\|WP_125855104.1\|1498389_1499571_+\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	9.32083e-164
NZ_CP041933.1\|WP_144187857.1\|1486699_1487626_-\|4-hydroxyproline-epimerase	gnl\|CDD\|172473	PRK13970, PRK13970, 4-hydroxyproline epimerase.	9.84041e-155
NZ_CP041933.1\|WP_029886569.1\|1482725_1483982_-\|FAD-binding-oxidoreductase	gnl\|CDD\|334462	pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.	3.67363e-37
NZ_CP041933.1\|WP_054881638.1\|1500186_1501824_+\|phosphoethanolamine--lipid-A-transferase	gnl\|CDD\|183224	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional.	0
NZ_CP041933.1\|WP_144187865.1\|1492973_1493873_-\|bestrophin	gnl\|CDD\|376448	pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel. Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localized to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members.	1.78983e-106
NZ_CP041933.1\|WP_144187859.1\|1487712_1489329_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.38906e-53
NZ_CP041933.1\|WP_009683314.1\|1485707_1486655_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	1.25819e-67
NZ_CP041933.1\|WP_009686808.1\|1503066_1503360_+\|hypothetical-protein	gnl\|CDD\|225642	COG3100, COG3100, Uncharacterized protein conserved in bacteria [Function unknown].	5.05105e-39
NZ_CP041933.1\|WP_009681756.1\|1479249_1480887_+\|malate-dehydrogenase-(quinone)	gnl\|CDD\|179979	PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.	0
NZ_CP041933.1\|WP_029886571.1\|1480977_1481313_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	2.10213e-12
NZ_CP041933.1\|WP_009681692.1\|1491989_1492529_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0139e-99
NZ_CP041933.1\|WP_144187855.1\|1483984_1485562_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143447	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.	0
NZ_CP041933.1\|WP_144187861.1\|1489705_1490488_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.87884e-29

>NZ_CP041933.1|WP_144187863.1|1490475_1491363_-|LysR-family-transcriptional-regulator
MDIKQLKFLIALDQTRHFGQAAALCHITQPTLSMRLRNLEDELDLVLVKRGQRFEGFTEAGERILAWARTLLAAHDGLQAEAASCRGQVVGSLRLGTVPLASFNPMHLLLPLREKYPELHFQLSSLSSEQVIDGLSRNQLDLGICYLDQVNTSFFEVIELGITTMGLLHDTRHFRFASDSLRWDELGDIPLGLLSKGMHYRQSLDLSFRSRGLEPNAVLESDSSFQLIQAINTGICCAIMPLGCGLEDLSEHLRILPVADAAIHSPVGLLLRRSEPRSAIAEQCFAEAQALFQAG
>NZ_CP041933.1|WP_144187861.1|1489705_1490488_+|helix-turn-helix-domain-containing-protein
MTDTPLAPLYHSLDQHRPATLEALLAGVSLLLPILDAIPNAAIFIKDPAARYVLANNTLVQRCGLKRLQPLLGKTSAEVFPAQFGPGYTEQDRRVLKQGLVLEDQLELHLYGSREPGWCLTHKRPLYSQAGEIIGLVGISVDLQSAADSHPAYQRLAAVDEHIRQHFHQPISMRELTRIAGISVAQLERYCKRVFHLTPRQMIHKARLEHAHRLLHSDLPITEVAMCCGYTDHSAFSRQFKQLTGFTPRQYRQATSDQPA
>NZ_CP041933.1|WP_144187859.1|1487712_1489329_-|amino-acid-permease
MSGKFKKQLSLLDLTFIGLGAIFGSGWLFAASHVAAIAGPAGILSWFLGGFAVLLLGIVYCELGAALPRAGGVVRYPVYSHGPLLGYLMGFITLIAFSSLIAIEVVASRQYAAAWFPELTKAGSSDPTVLGWLVQFALLGLFFFLNYRSVKTFAKANNLISVFKFIVPLLVIGVLFTFFKPQNFTVQGFAPFGLSGVEMAVSAGGIIFAYLGLTPIISVASEVKNPQRTIPIALILSVLLSTAIYALLQLAFLGSVPTEMLANGWASVTKELALPYRDIALALGVGWLAYLVVADAVISPSGCGNIYMNATPRVIYGWAQTGTFFRYFTRIDAESGIPRPALWLTFALSVFWTLPFPSWEALINVVSAALVLSYAVAPVSVAALRRNAPEMPRPFRVKGMAVLGPLSFIIAALIVYWSGWNTVSWLLALQIVMFVLYLVCKRFVPTQHLTLAQQVRSSAWLIGFYAVIILLSWLGSFGGLGVLGHPFDTVAVAVSALGIYYWGAATGVPAHLVRLEGEDESEASQEPLAGQRPAALAR
>NZ_CP041933.1|WP_144187857.1|1486699_1487626_-|4-hydroxyproline-epimerase
MKQIHVIDSHTGGEPTRLVMQGFPQLHGRSMAEQRDELRELHDPWRRACLLEPRGNDVLVGALYCPPVSADATCGVIFFNNAGYLNMCGHGTIGLVASLQHLGLIAPGVHKIDTPVGQVSATLHEDGAVTVANVPAYRYRQHVAVDVPGHGVVHGDIAWGGNWFFLVAEHGQRIELDNREALTAYTWAMLNALQAQGITGEHGAPIDHVELFADDANADSRNFVMCPGKAYDRSPCGTGTSAKLACLAADGKLAEGQTWVQASITGSQFQGHYQRDGERIRPFITGRAYMTADSTLLIDEQDPFAWGI
>NZ_CP041933.1|WP_009683314.1|1485707_1486655_-|dihydrodipicolinate-synthase-family-protein
MNNNIFTGTMPALMTPCTAERKPDFDALVRKGRELIDAGMSAVVYCGSMGDWPLLTEAQRQEGVARLVGAGIPTIVGTGAVNTREAVAHAAHAAKVGAAGLMVIPRVLSRGASLIAQKHHFSAILAAAPKLPAVIYNSPYYGFATRADLFFELRSAYPNLIGFKEFGGGADLRYAAEHITSKDDDVTLMVGVDTQVVHGFVNCNATGAITGIGNALPREVLQLVSLSKQAAKGDARARRLARELEAALAVLSSFDEGCDLVLYYKHLMVLNGDREYSLHFNETDALTDAQRNYAEQQYALFRTWYASWSAEQNLA
>NZ_CP041933.1|WP_144187855.1|1483984_1485562_-|aldehyde-dehydrogenase-family-protein
MTLTGNLLIGHTPVTGTRAAIHAVNPATGQALEPPYFGGSGEQVAQACALAWAAFDAYRETSLEQRAHFLETIAAQIEALGDALIDRAVAETGLPKARIQGERGRTCTQLRTFARVVRAGEWLDVRIDQALPERQPLPRSDLRQRQVALGPVAVFGASNFPLAFSVAGGDTASALAAGCPVVVKAHSAHPGTSELVGRALAQAAQQCGLPEGVFSLLYGAGHEVGIALVSDPRIQAVGFTGSRSGGMALRQAAQARPQPIPVYAEMSSINPVFLCNAALQARGEALAQGFVASLTQGAGQFCTNPGLVIARQGPALQRFISAASHHLQQAAAQTMLTPGIFSAYQAGVAALAENANAQPAASGQGSTGPNQCQAQLFVTQAEAFLADPALQGEVFGAASLLVACSSDAQVRQVAEHLEGQLTATLHLDEADIDSARALLPTLERKAGRLLVNGWPTGVEVCDAMVHGGPFPATTDARTTSVGTAAILRFLRPVCYQDFPDALLPQALQQANPLQLRRLLDGKREG
>NZ_CP041933.1|WP_029886569.1|1482725_1483982_-|FAD-binding-oxidoreductase
MHETAETDIAVVGAGIVGVACALQLARQGRRVTLLDRQAPGHGASFGNAGHLATEQVFPIADLSILKRLPRMLLDPMGPLRLDWKYLPKAMPWFTRLLLNLRPAPFQRSVAGIRRLNEASLGAWQQLLGSIGRSELFHAAGSLLVFERPESRQALAALQARLQQQAVPVDYWSAHAVRAAAPQLSESLLGGLFFPRTGHFIDPYRVVCALFEAAKASGVRFVQAQVEGGHLHSGGVSLASAQGTFNARQVLLSCGAHSARLTAALTGKRVPLDTERGYHLMLPGEHQRLPFAVTSLERKFIMTPMAEGLRLAGTVEFAGLEAPPSMQRAWQLHRLSKGLFQQELSVEGATPWMGFRPSLPDSLPVIDRVCDGRVLLAFGHQHLGLTQAAVTAQWVGRLAERAGGAELAAYRLGRFGRF
>NZ_CP041933.1|WP_029886570.1|1481362_1482454_+|NADH:flavin-oxidoreductase/NADH-oxidase
MSALFQPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGMARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDARGWETIAPSAIAFGAHLPKVPRAMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAKELGVEKASWTLPAPYAHWLERYR
>NZ_CP041933.1|WP_029886571.1|1480977_1481313_-|helix-turn-helix-transcriptional-regulator
MAIMETPGIMCSMRAYKHPNPEDLVLERLLYALSDPVRMGIVRQLAGVAEATCGELDGGRPKSSMSHHFRVLRDAGLVHTRNVGTTHMNSLRSEMLEARFPGLLACILRQQ
>NZ_CP041933.1|WP_009681756.1|1479249_1480887_+|malate-dehydrogenase-(quinone)
MFKKAGKTLLGLAVAASCMQAHAAETKKVDVLLVGGGIMSSTLAVWLHELEPSWSMEMVERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGNINISKAIEINEAFQISRQFWSWQVRQGVLKNPHSFINTTPHMSFVWGDDNIKFLKKRYDALQASPLFRPMQYSEDHAQIAKWVPLMMEGRDPNQKLAVTWTPIGTDVNFGEITRQFVGHLQTQKGFDLKLSSEVQDITRNKDGSWHVEYKNLKDGTESATDAKFLFIGAGGGALKLLQKSGIPEAKEYAGFPVGGSFLVTENPTVAMQHMAKAYGIASTGAPPMSVPHLDTRVLDGKRVVLFGPFATFSTKFLKNGSYLDLLSTTTPHNVWPMTKVGIEQYPLVEYLAGQLMLSDDDRFEALRTYFPNAKKEDWKLWQAGQRVQIIKRDAEKGGVLKLGTEVVASEDRTIAGLLGASPGASTAAPIMLNVLETVFKEKVATPEWQAKIKQIVPSYGTKLNDSAAATQKEWNYTAEVLQLEKPPVIDASVGTTVAPSQPVESKPENDMAL
>NZ_CP041933.1|WP_009681692.1|1491989_1492529_+|molybdenum-cofactor-biosynthesis-protein-B
MRVQPDAVFVPLNIAVLTVSDTRSYDNDTSGQLLASRSVEVGHRLVARALLKDDLYKIRAQVATWIADDQVQVVLITGGTGFTGRDSTPEAVGCLLDKHVDGFGELFRALSILDIGSSTVQSRALAGLANRTLVCCLPGSTGACRTAWEGILAEQLDARHRPCNFVKHLLPIEACASRG
>NZ_CP041933.1|WP_144187865.1|1492973_1493873_-|bestrophin
MIVHPAPDVLRVLFTLKGSIIKRIALRCLMVTLLAALIVLVERHYPAFFYPVSATPFTLLGLSLSIFMSFRNNACYDRWWEGRKAWGKLIIETRSFVRESVVIGDEALRRELLRSLCGFAHALNARLRNEDDLAAARPWLPRPEALNPHNVCDSILREVGSQCSRLAERQQISDWRYSLLEQRLVGLTEVQATCERIKGTPLPFPYTLLLHRTIYIFCLLLPFALAEPLGWLAPLFTTIVGYTFFGLDAIGNELEDPFGRDENDLPTDAMVRTVERDVLAGLGDQQLPPALLPMGHVLS
>NZ_CP041933.1|WP_009686815.1|1493893_1494898_-|GTP-3',8-cyclase-MoaA
MEQNSRALIDGFNRKIDYLRMSVTDRCDFRCVYCMAEDMQFLPRQQILSLEELFQVAERFVALGTRKIRLTGGEPLVRQGIVDLCGRIAALPGLRELCLTSNGSQLGRLAQPLFDAGVTRLNISLDSLDADRFKQLTRTGDLHQVIAGIDAARQAGFKRTKLNCVVLKGRNDHELVDLVRFAIDRELDITFIEEMPLGVISEHERGESFCSSDEVRALLAEQFTLVESTETSQGPARYWRLAEAANTRVGFISPHSHNFCATCNRVRLTVEGRLLLCLGNEHSVDLKHVLRAHPGDPDRLEKAIRDSLHLKPYRHHFEVGGDVQILRFMNMTGG
>NZ_CP041933.1|WP_144187867.1|1495134_1497465_+|FdhF/YdeP-family-oxidoreductase
MSQDEHIRDYKGAAAGWGALKSVTKSWLGSDNAFKNLRAMLKTNQNGGFDCPGCAWGESPESDMVKFCENGAKAVNWEATGRSVDPAFFAKYSVSALKQQTDYWLEYQGRLTHPMRYDAATDHYVETTWAEAFELVARHLRALQSPDEAEFYTSGRASNEAAFLYQLFVRAYGTNNFPDCSNMCHEASGSGMSETLGVGKGTVVFHDLELADAIFVIGQNPGTNHPRMLEPLREAVKRGAQVVCFNPLKERGLERFQHPQHPFEMLSNGSEPTSSAYFRPALGGDMAAMRGIAKFLLQWEREAQAKGEPPVFDHAFIAEHTSGIDGYLAAVDATAWEHIVEQSGLTLAEIELAARMYRKAERVIMCWAMGVTQHRHSVATVQEIVNLQLLRGNVGKPGAGLSPVRGHSNVQGDRTMGIDEKPRAALLDALEKRFRFRVPRAHGHNAVLAIKAMEEGRAKVFVALGGNFAQATPDTPRTHAALQKCALTVQISTKLNRSHLVTGRDALILPCLGRTEIDLQAAGPQGVTVEDTFSMVHLSHGQLRPRSPHMRSEPWIIAGMAKATLGNQPIDWTYAVADYNRIRDMIADVIPGFARFNERLNSPGGFHLGNHAAERNFRTATGKARFMPHTLPEGLVNAKVLARGDKPDLILQTLRSHDQYNTTLYGLDDRYRGVFGLREVVFVNEADIRRLGFEPGEHVDLVSLWEDGVERRVSGFRLVAYDVPQGQAAAYYPETNPLVPLESYGEGTYTPTSKFVAIKLEKAKAGNRIAAVLASD
>NZ_CP041933.1|WP_009686813.1|1497835_1498297_-|Lrp/AsnC-family-transcriptional-regulator
MDSFDQHILTLLQRDASMSLKDLAEAVNLSTTPCWKRVKRLEEEGYILGRVALLAPERLGLGLTVFVQLKTQRHDSAWLAQFAATVTGFEEVMECYRMSGDWDYMLRVVVGDIAAYDRFYKKLITSTEGLSNITSSFAMEQMKYTTAFPVNRG
>NZ_CP041933.1|WP_125855104.1|1498389_1499571_+|PLP-dependent-transferase
MGLTMSDKPRNFATRAIHAGEQFSVADNAIFPAIVTASSFTKRSLDDKPEYSYSRVGNPTRHAYETCVAALEEGVGAVACASGVNATATVLELLPKDAHVVVMNGVYGGTFRILEDYRSRTSGLTTTYVDLNDLGAVAAAIKPETQLIWIESPTNPLLHLVDIKAVCDLARAKGILTCIDNTFCSPWNQRPINLGVDLVMHSASKYIGGHSDLTGGVVVAANDALLARLRRISMAIGAVQGPFDCYLALRGLKTLDVRMERQCANALQVARFLENHAQVEQVYYPGLESHPQHELCKRQMRSGGAVVAMKVKGDRPALNRLVEALQIFVLADSLGGVESMINHSWSMSHCSLSPEQKGVMGISENLLRLSVGIEDYRDLIEDLDGALKALVAV
>NZ_CP041933.1|WP_029886178.1|1499697_1499934_-|YdcH-family-protein
MPVPHDLLADLHITAEKFQALMDNDQALHALHKEYNAKDKEVVAAEGNGTNDDAVNRLRKERLLIKDKIERIIHPPKS
>NZ_CP041933.1|WP_054881638.1|1500186_1501824_+|phosphoethanolamine--lipid-A-transferase
MLNFKSLRTEWVTLLASLYLLIGFNMFLWEHLQAVVPPGLSGLWLILAFAVLMLFAFNLVLTLFAFRYVLKPLLVVLFISGAGVAYFMNQYGVLIDAGMFRNMAETNVAEVRDLMSFKFAAYILLLGVLPSVLVCKAQIAYRRWQRELLGKLLVSGACVVALGSVALVNYQGLSSLLRNHHELRLMLTPSNIVGASIGYVGERVGTAARPFQPYGQDAKRDVAWQKHERKSLTVLVVGESARADHFGVLGYGRDTTPNLAKEQGLLAFSDVHSCGTETAVSVPCMFSGMQRKDYDASVAKNREGLLDILQRAGLAVQWRDNQSGCKGTCDRVQFIDVSNLKDPQLCAGGECHDQILLQGLDALIDNLDKDTVLVLHQMGSHGPEYFKRYPEGGERFSPVCQSNALNQCSEQQIINGYDNTLAYTDKVLASLIDTLRSKQDKVDTAMIYLSDHGESLGEYNLFLHGTPYAIAPEQQKHVPLLTWFSDSYKEDFGLDTDCLAKLSDAPLSQDNLFHSMLGLLQVHTEVYQRSLDMFASCRPWLTAKR
>NZ_CP041933.1|WP_054881637.1|1501936_1503070_+|ribonuclease-D
MAIEIHWICDDQSLAEHCRDWQQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIGNWQPLAELLENSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELYNVLRPRLSDDKYAWVLEDGAELVAALRREVEPATLYRDVKLAWKLAPQQLAVLRELCAWRERTARSRDVPRNRVLKEHSLWPIAKNQPSNLSALAKVEEMHPRTIRQDGEFLIQLIKRAASLPAEQWPAPLPEPLPIEASGILKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRERMGQALLDSLAGAGETR
>NZ_CP041933.1|WP_009686808.1|1503066_1503360_+|hypothetical-protein
MKRICSIYKSPRKNEMYLYVLKADGLERVPEGLLPFFGTPVHAFDLVLSPERKLAREDITKVLENLDNQGYHLQMPPPDDEYIEHLPEELLRRNDPA

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041933_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041933_2

4007650-4007754

Orphan

Consensus_repeat	Method
CCTTGCCAGGAACCATAGAATCTCCCACAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041933_2

>merge|NZ_CP041933|2|4007650-4007754|CRISPRCasFinder
CCTTGCCAGGAACCATAGAATCTCCCACAGGGATCGCATCAGGGCTGACAGGCGCTGAAGATGCTGCAGCTATCCTTGCCAGAAACCATAGAATCTCCCACAGGG

>NZ_CP041933|2|2|4007650-4007754|CRISPRCasFinder
CCTTGCCAGGAACCATAGAATCTCCCACAGGG	ATCGCATCAGGGCTGACAGGCGCTGAAGATGCTGCAGCTAT
CCTTGCCAGAAACCATAGAATCTCCCACAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041933.1\|WP_029887959.1\|4013292_4014180_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377544
NZ_CP041933.1\|WP_144189012.1\|4003851_4005039_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041933.1\|WP_009683626.1\|4009927_4011007_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP041933.1\|WP_047149783.1\|4014356_4016714_+\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP041933.1\|WP_115294539.1\|4003081_4003492_+\|dehydrogenase	unknown	unknown	unknown
NZ_CP041933.1\|WP_009682838.1\|4017774_4018986_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NZ_CP041933.1\|WP_144189006.1\|4000262_4000472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041933.1\|WP_009682840.1\|4016703_4017192_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP041933.1\|WP_009681877.1\|4005306_4005852_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP041933.1\|WP_009681876.1\|4005917_4006643_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP041933.1\|WP_047149784.1\|4012809_4013292_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP041933.1\|WP_144189004.1\|3998566_3999499_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP041933.1\|WP_009683625.1\|4011903_4012671_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041933.1\|WP_054913968.1\|3999645_4000269_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198289
NZ_CP041933.1\|WP_144189014.1\|4006719_4007259_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP041933.1\|WP_144189016.1\|4007881_4008241_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041933.1\|WP_144189008.1\|4000555_4003003_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NZ_CP041933.1\|WP_115294548.1\|4017205_4017607_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP041933.1\|WP_047150248.1\|4019661_4020549_+\|protease-HtpX	unknown	unknown	gnl\|CDD\|235478
NZ_CP041933.1\|WP_144189010.1\|4003504_4003819_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041933.1\|WP_029887959.1\|4013292_4014180_-\|ATP-binding-protein	gnl\|CDD\|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	1.95791e-140
NZ_CP041933.1\|WP_009683626.1\|4009927_4011007_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.00089e-13
NZ_CP041933.1\|WP_144189004.1\|3998566_3999499_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.58769e-104
NZ_CP041933.1\|WP_009682838.1\|4017774_4018986_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP041933.1\|WP_009681877.1\|4005306_4005852_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	7.70511e-13
NZ_CP041933.1\|WP_009681876.1\|4005917_4006643_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	5.91718e-59
NZ_CP041933.1\|WP_047149784.1\|4012809_4013292_-\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	3.78142e-82
NZ_CP041933.1\|WP_009682840.1\|4016703_4017192_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	5.24623e-86
NZ_CP041933.1\|WP_054913968.1\|3999645_4000269_-\|glutathione-S-transferase	gnl\|CDD\|198289	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	9.30552e-57
NZ_CP041933.1\|WP_144189014.1\|4006719_4007259_+\|fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	7.24951e-10
NZ_CP041933.1\|WP_047149783.1\|4014356_4016714_+\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	2.30272e-107
NZ_CP041933.1\|WP_144189008.1\|4000555_4003003_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP041933.1\|WP_115294548.1\|4017205_4017607_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	3.61094e-89
NZ_CP041933.1\|WP_047150248.1\|4019661_4020549_+\|protease-HtpX	gnl\|CDD\|235478	PRK05457, PRK05457, protease HtpX.	0

>NZ_CP041933.1|WP_144189014.1|4006719_4007259_+|fimbrial-protein
MKPLVVAFGLAISSQQALANTGSINFFGQVYSGTCAVEIIDPSTGLPASRIYMGEVSTAQFKQPDDEAANRAFGLRLTPGGGCILLPGANASVTFTGSYGGAGASGTLYALEPGGATGLALIIKDNVGTPVDNGIASKQYPLHDSKPTDMLFSAAYKAIDTQVTAGSANSDVQFAVAIP
>NZ_CP041933.1|WP_009681876.1|4005917_4006643_+|molecular-chaperone
MKIHLRRLALGICFASMMQTAQAALTVNTTRIVFDSDNSSTSVVIANPSPRPYAVQTWVNTAKDDTDTAVPLATSPGLFRLDPGKEQMVQISRLPNKLPKDRETLFYLNVQEIPEATPGDVNVLNIALRTRLKLFYRPKELKDRPAERIGELEWSVRQRAGRVELVVHNPTPYHYTFGRLEVSSAGKTEAIQAMAMARPFDLQVYDLTQIKTLTGLQLTFTTINDYGVATTPMQKALSSLP
>NZ_CP041933.1|WP_009681877.1|4005306_4005852_+|type-1-fimbrial-protein
MKKKLIPLAILLGLASNAAFANTGSINFYGQVHAGTCPIELIDPSTGLPLSRINMGNVSVSQFAAIGDEAASRAFGMRVTPGNGCVVTPSTSAQVTFTAAYGGAGTGGALYALEPGGAADLALIIKDNAGTPINNGSPSKDYPLDDTNPTTMIFSAAYKSIGTGVTAGTANTDVQFLVDIP
>NZ_CP041933.1|WP_144189012.1|4003851_4005039_-|hypothetical-protein
MSTQKDKDGNKLVAKAASDPSAAAEPAILLLYALNDETQLNGLWAKRHTLIGHDVDGGELVVSEREMNRTTWELTLVHLGYPKLQFDTSRRTLKLDKNLLTDLRLSLNTPIGMNARQAVRIEQSDGSAGKVLEVTLGLNSSHIEYHKWKGSEAVVHWEQPATYVIANDRLSADRFKQHFEPLKRMKIASLSKPVSVALDDVWVYFEYGESPMRINVFNGPGQVAARSDPILVPASEDVAIAFEVGAFPITLTQLPPVDKDWVVGLFAPSWSMKWTMGGYIPPGNFYFGVYALSGSETAQTKVTTQAQALKCSPLISLCDYGGDLEEIQLMSAGAQPVWGAEGTLHGELLLQNGKHYYKPPQSLPAAVRFNTGGDTFIPAACRASWLLRPRQISLK
>NZ_CP041933.1|WP_144189010.1|4003504_4003819_-|hypothetical-protein
MIRWVHPTHFIRVARHALGLKLSLFYLNGRQEEKAVADSQVSWRVLAGNGSVIAGVFRPDVSNPSPYSVVMGEDTFAVDEWRWGLTIIAMPMLDIDTLVDYYSR
>NZ_CP041933.1|WP_115294539.1|4003081_4003492_+|dehydrogenase
MATPHLQYHLQLLNHLRTILVALGDAEQVSEESHALFLERFDELLTLLPQDPLQSQYLGQDLTCQVIQRYPQIAHLVPRDLLWFFGGDCLHFMPDEELDLYQQLEERRYEAERNDEPFDWHQEKQLLAQTPPSTHH
>NZ_CP041933.1|WP_144189008.1|4000555_4003003_+|acyl-CoA-dehydrogenase
MWLLWLVVLVIGAAYLTHRRLAPLQILGSVAAYVLLMSIFSSAPGWLLALIWIVLAFKVAVVALPDWRRKVFTGRVFNWFQRTLPPMSQTEREAIDAGTVWWDGELFSGRPDWRTLLAYPAPKLTEEEQAFIDGPTEALCAMVSDWQIGQDLDLPPEAWAHIKENGFFALIIPKEYGGKGFSAYAHSQVAMKLATRSGDLASTVMVPNSLGPAELLLHYGTDEQRNHYLPRLARGEEIPCFALTGPLAGSDAGAMPDTGVICKGQWQGEEVLGLRLNWEKRYITLGPVATLLGLAFKAYDPDHLLGEQEALGISLALIPTDTPGVEIGKRHLPLGAAFMNGPNSGKDVFVPLSFLIGGQDMLGKGWMMLMNCLSVGRSISLPAVGTGAAKYTSLVTGQYANIREQFNVPLAAFEGIQESLARIGGNAWLMDSARLLTAKAVDLGEKPSVLSAILKYHLTERGRECIQHAMDVHGGKAIIMGPNNYLGRNWQGAPIFITVEGANILSRNLMIFGQGAIRCHPFVLKEMALASREDRDQALKEFDDLLMKHIMFAAGNAASTLVFNLGLGRLENVPGDALSQGYFRALNRQASAFALLADLSMMLLGGALKRRERLSARLGDVLSYLYLASAALKRYHDLGSPKHMQPLLRWAMEESLGQAETALDRLLDNFPNRFIGCALRVLVFPFGRRHTGPSDELDAEVAALIGRSKGDPALEELLSGCFRPKTDGDPVAALQRACELLEEAAPLHKALHQAIKGGKVQPTPGQSAIDAAVQAGALQPGEGLQLHEAEKARRTVIDVDAFDKAQLLPEHGKVR
>NZ_CP041933.1|WP_144189006.1|4000262_4000472_-|hypothetical-protein
MTGCGGGSFRIFSACAGLFAGTPAPTGISQGSRRVRHLWERARPRRGQYRRQNSGVDCPTSAFIRTLPC
>NZ_CP041933.1|WP_054913968.1|3999645_4000269_-|glutathione-S-transferase
MLKIWGRKNSSNVRKALWIAHELGLDFESIDAGGAFGVVNEPHYRARNPNGLVPLLEDGDLVLWESNAIVRYLCAEYGAEQGWYLEDPRQRALADKWMDWTTSALATPFRPLFWGLLRTPEDQRDWVAINAAHKRCAELLAMADAALAQQPYLSGDQIGMGDIPLGCFAYAWFELPIERPAMQHLEAWYARLKARPAYQAAVMTALT
>NZ_CP041933.1|WP_144189004.1|3998566_3999499_-|ATP-binding-cassette-domain-containing-protein
MSSALSIRQLTKTYGNGFQALKGIDLDVAEGDFFALLGPNGAGKSTTIGILSTLVNKTSGTVNVFGHDLDREPAALKRCLGVVPQEFNFNQFEKTFDIVVTQAGYYGIPPKLAKERAEQYLTQLGLWDKRDVQSRSLSGGMKRRLMIARALIHEPRLLILDEPTAGVDIELRRSMWSFLTELNQKGITIILTTHYLEEAEQLCRNIGIIDHGTIVENTSMRQLLGKLHVETFVLDLKQDLATAPVLQGYPCRLLTPHTLEVQVDKDIGITALFGQLALQSIEVQSLRNKTNRLEELFVSLVEKNLSKVAV
>NZ_CP041933.1|WP_144189016.1|4007881_4008241_-|hypothetical-protein
MLSHSPKDPAGKTIRQQYFNFDALDNITWVLTDFEEEDGSKDSNEATYLFENDDPAQLTGVTNTHADYADFTLEYDEDGNMKVDDRGKVLTYDALGRLSSYDGGGYSYDPLDRLSGQEA
>NZ_CP041933.1|WP_009683626.1|4009927_4011007_+|type-1-fimbrial-protein
MPLVSRLFIGIAAAATMLTLPSQAHALGCEWPTTTGPMQFTHNISGMRWVARDAPVGSKIYSATSTGIAGPGFALNCDNDGSLALTANMGTPLPVAPGTFPPVDGKDVTGKVLQTSIPGVGLYLELGGFLNGTASNTFQANDGGIGAVPYVGENQRNMAPTPLVMRNLIIKYMALIKTGPIPAGISSFSQEVVRGVVSDVGDAVRLTLGGQVQLAQCTVKADAVSANPVQLGTHDIADFTGQGSTTNPVDFFITLSDCEDDPAGSVARAFMRLDGVDGSVPVDRDLGLFTLTTDSTAAGIGIQVLRSDNTPVKLEEYVDMVGLTPGITRLDLRARYYQTAATVTPGEAKGALNFTIEYR
>NZ_CP041933.1|WP_009683625.1|4011903_4012671_+|hypothetical-protein
MTPLLITLLIVAGIALLIVIGYLNNVVENGKLERARLKIELADRLRRCGEITETFPGQFMTPALKLLLTRLELNLNQRQLAVDKHNAQLKARMAELEGLIALGEKIPVNNPPNPIQTEVKAKDVRFLLEALHNQVTRAAHEGFLPAPEAKHWVKEIRHILVLLHIEFFNNLGQQALQKGQPGQARLAFERGVQYLRKQPEPKVYEEQLTYLEKLLGRANAQVLDQMEPAEDEHNELTQGLKTDEDETWKKKVMYD
>NZ_CP041933.1|WP_047149784.1|4012809_4013292_-|GAF-domain-containing-protein
MIDLNASGVGLDGYHLLAAQVQALFADERDFIANAAQFSAFLYHQVGDLNWAGFYLNRNGQLVLGPFQGQVACVRIPFGKGVCGAAAATGKTQRVEDVHAFPGHIACDSASNSELVIPLVKEGRLIGVLDLDSPKLARFSEADQVGLERLAAIFLELTDC
>NZ_CP041933.1|WP_029887959.1|4013292_4014180_-|ATP-binding-protein
MDARLIAFLDRAESVLARLEPLLPAPRPHIDWATTLAARWQRDGRSGYLLPLEVSLDIRLTDLIGVDKQRDQLGRNTHQFIKGMPANHALLWGSRGTGKSSLVRALLAEHASAGLRLIEIERDHLADLPRVVEQLQKLPQRFILFCDDLSFEAGEGDYRVLKSVLDGSLEQAPDNVLLYATSNRRHLVPEKESDNENWKRVDGELHPSEAVEDKIALSDRFGLWLSFYPFTQAHFLDVVEHWIGQLAAPAGLAWQRDEALEILAVRWATGRGNRNGRCAYQFARYWVGLQLLEQK
>NZ_CP041933.1|WP_047149783.1|4014356_4016714_+|response-regulator
MLAQRKEWETSSELMDIKFTNRLSYKQARLTVLVGFILGTLLSLIQIGIDYASVDASINREVRALLQISHNPASRIAYNIDSELALELTRGLLQSPAVIRARLIDNNQTVLADVERPRLQDRLRPLSDFLFGEQRQLSESLYLTHMPEEYLGTLYLDVDTFAFGSRFLDRAGITLLNGFARSLVLTGLLLALFYLMLTKPLVTVISALSGSDPRKPRQTRLECPHGHELDEIGVLVKVANQQFVSMATEIEQRRTAENRLTQYLNELEDIVSARTNELKASNSSLSLTNQELEQARRRALDMAQARAAFLANMSHEIRTPLNGMLGMIALALDNPLPSEQRQQLAIAHDSGKVLVELLNDILDLSKFDAGQLELERIAFDMGSMVEDTANLLSQNTAQSVELTCLIAGDFPSSVLGDPTRVRQIVSNLLSNALKFTRFGRVDMRLERIAGGVRLQVRDTGIGIPEEAQVRIFQPFTQAGAGITRQYGGTGLGLALTRNLCKAMQGHLQISSEAGFGSCFTAELPLAAHTEAIPPQPLQGRVAALSAAGSGLHELLQRVLPAWGLSYQRHDSRMALQATAFDLLITDDVDHLFELRPALQAPILLVTAYGNFLSQEQSLALAPLHQLARPLARNALYQTLRRTLQGHEPEHPLATPPVTQGEGRARILLVEDNPVNQLVAKGMLAKLGCQVELATQGAEALAALERQPFDLVLMDCNMPVMDGYEASRRIRQSGRWPHLPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWVPLSG
>NZ_CP041933.1|WP_009682840.1|4016703_4017192_-|glutathione-peroxidase
MAGSILDIPCVTLGGEHKTLGDYPGKALLVVNTASQCGFTPQYKGLEQLWQAYRGRGLVVLGFPCNQFGQQEPGEAREIAQFCERNFGVSFPLFRKVDVNGPGTHPLYVELKQRAPGLLGSQKVKWNFTKFLLDPASGQVTRYAPFTKPQALEADIERLLSR
>NZ_CP041933.1|WP_115294548.1|4017205_4017607_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKKIEKTLEEWRSMLDPEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCSLPLFDAQTKFDSGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDGPPPTGLRYCINSVCIDLRPRPRD
>NZ_CP041933.1|WP_009682838.1|4017774_4018986_+|pyridoxal-phosphate-dependent-aminotransferase
MQFSKSNKLANVCYDIRGPVLKHAKRLEEEGHRILKLNIGNPAPFGFEAPDEILQDVIRNLPTAQGYSDSKGLFSARKAVMQYCQQKEIEGVTIEDIYLGNGVSELIVMSMQALLNNGDEVLIPAPDYPLWTAAVSLAGGKPVHYLCDEQADWFPDLEDIKAKITPNTKALVIINPNNPTGAVYSRELLLGMLALARQHNLVVFSDEIYDKILYDEAVHISTASLAPDLLCLTFNGLSKSYRVAGFRSGWLIISGPKHHAQSYIEGIDMLANMRLCANVPAQHAIQTALGGYQSINDLVLPPGRLLEQRNRTYELLNDIPGVSCVKPMGALYAFPRIDPKVCPILNDEKFALDLLLSEKLLIVQGTAFNWPWPDHFRVVTLPRVDDLEAAIGRIGNFLRTYSQ
>NZ_CP041933.1|WP_047150248.1|4019661_4020549_+|protease-HtpX
MMRILLFVATNLAVVLVASITLSLFGFNGFMAANGVDLNLSSLLVFCAVFGFAGSLVSLFISKWMAKMTTGTQIITQPRTRHEQWLLQTVEELSREAGIKMPEVGIFPAYEANAFATGWNRNDALVAVSQGLLERFSPDEVRAVLAHEIGHVANGDMVTLALVQGVVNTFVMFFARIIGNFVDKVIFKNEEGQGIAYYVATIVAELVLGILASMIVMWFSRRREYRADEAGAQLAGTSAMIGALQRLRVEQGLPVHMPDTLKAFGINGGLKHGLAGLLMSHPPLEDRIEALRRRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

265667 : 312664

Pseudomonas_phage(83.33%)

tail,integrase,holin

attL 265525:265571|attR 282146:282192

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
265525:265571	attL	NA	NA	NA	NA
WP_144187362.1\|265667_267191_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_144187364.1\|268278_268497_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144187366.1\|268668_269022_+	hypothetical protein	A0A1B0VRK7	Pseudomonas_phage	1.3e-45	79.3
WP_144189580.1\|269033_269534_+	hypothetical protein	A0A1B0VMK9	Pseudomonas_phage	4.2e-58	75.3
WP_144187368.1\|270335_270635_+	hypothetical protein	NA	NA	NA	NA
WP_144187370.1\|270631_270847_+	hypothetical protein	NA	NA	NA	NA
WP_144187372.1\|270843_271560_+	hypothetical protein	NA	NA	NA	NA
WP_144187374.1\|271562_271847_+	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	2.1e-30	73.8
WP_144187376.1\|271839_272067_+	hypothetical protein	A0A1B0VRK9	Pseudomonas_phage	3.5e-28	80.0
WP_144187378.1\|272063_272954_+	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	1.1e-112	71.4
WP_144187380.1\|272940_274740_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	8.6e-303	86.0
WP_144187382.1\|275076_275379_+	hypothetical protein	A0A1B0VML7	Pseudomonas_phage	1.5e-29	61.2
WP_144187384.1\|275375_275975_+	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	7.8e-67	65.0
WP_144189582.1\|275993_276923_+	hypothetical protein	NA	NA	NA	NA
WP_144187386.1\|276994_277594_+\|tail	tail assembly protein	A0A0S2SYS2	Pseudomonas_phage	6.4e-53	59.0
WP_144187388.1\|277590_278046_+	hypothetical protein	NA	NA	NA	NA
WP_144187390.1\|278599_279028_+	hypothetical protein	NA	NA	NA	NA
WP_144187392.1\|279392_280064_-	hypothetical protein	NA	NA	NA	NA
WP_144187394.1\|281547_281751_+	hypothetical protein	A0A1B0VML2	Pseudomonas_phage	2.5e-17	71.6
WP_009682865.1\|282321_282570_-	hypothetical protein	NA	NA	NA	NA
282146:282192	attR	NA	NA	NA	NA
WP_029885296.1\|283070_283346_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_115293253.1\|283576_284782_-	methyltransferase	NA	NA	NA	NA
WP_009682869.1\|284908_285598_-	ABC transporter permease	NA	NA	NA	NA
WP_115293254.1\|285597_286290_-	ABC transporter permease	NA	NA	NA	NA
WP_009682871.1\|286344_287097_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009682872.1\|287108_287882_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.9
WP_009682873.1\|288523_289909_+	GABA permease	NA	NA	NA	NA
WP_009682874.1\|290091_290532_-	hypothetical protein	NA	NA	NA	NA
WP_009682876.1\|290882_291155_-	oxidative damage protection protein	NA	NA	NA	NA
WP_115293256.1\|291154_292219_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_009682878.1\|292215_294462_-	AsmA family protein	NA	NA	NA	NA
WP_047150101.1\|294714_296376_+	OFA family MFS transporter	NA	NA	NA	NA
WP_009682881.1\|296658_297252_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_009682882.1\|297252_297891_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_009682883.1\|297891_298152_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_009682884.1\|298266_298998_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_144187396.1\|299107_299878_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_009682886.1\|299981_301160_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-24	36.2
WP_029886409.1\|301156_302002_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_009682888.1\|302086_303034_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009682889.1\|303485_304862_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_009682890.1\|305310_306417_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009682891.1\|306531_306789_-	hypothetical protein	NA	NA	NA	NA
WP_115293258.1\|307143_309114_+	peptidase M72 family protein	NA	NA	NA	NA
WP_009682893.1\|309205_309673_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_115293259.1\|309683_310649_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_115293260.1\|310712_311597_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_115293261.1\|311719_312664_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_2

990372 : 998135

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009683042.1\|990372_991227_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.4e-08	31.9
WP_009683041.1\|991229_991694_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|991706_992015_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_054890012.1\|992094_993588_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_010952146.1\|993761_994487_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_029887549.1\|994487_995012_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_029887548.1\|994998_995571_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_054890011.1\|995579_996104_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	3.1e-27	48.1
WP_009683033.1\|996103_997078_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.7e-34	31.5
WP_009683032.1\|997325_998135_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.7e-24	32.1

DBSCAN-SWA_3

1972744 : 1985137

uncultured_Caudovirales_phage(72.73%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009683106.1\|1972744_1973119_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	7.1e-10	45.8
WP_009683105.1\|1973149_1974430_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.7e-96	54.4
WP_009683104.1\|1974430_1975822_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_144188011.1\|1975937_1977309_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.6e-76	55.4
WP_009682091.1\|1977395_1978355_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_009682092.1\|1978448_1979450_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.0e-156	80.5
WP_144188013.1\|1979461_1979797_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	5.4e-41	73.9
WP_009682094.1\|1979793_1980090_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	8.1e-25	60.6
WP_009682095.1\|1980089_1980449_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.3e-36	64.2
WP_054881910.1\|1980450_1980843_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.2e-53	79.1
WP_054881911.1\|1981073_1982453_-	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.3e-27	50.4
WP_144188015.1\|1982422_1982758_+	hypothetical protein	NA	NA	NA	NA
WP_003251184.1\|1982700_1983372_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_009682098.1\|1983775_1985137_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	4.1e-63	40.6

DBSCAN-SWA_4

2249240 : 2256659

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125854409.1\|2249240_2249942_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.9e-102	76.4
WP_125854408.1\|2249954_2250425_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.4e-57	69.2
WP_125854407.1\|2250453_2251737_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.9e-172	74.2
WP_009686587.1\|2251758_2252106_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	4.9e-37	64.6
WP_009686588.1\|2252260_2253394_+	alanine--glyoxylate aminotransferase family protein	A0A0N9QIZ2	Chrysochromulina_ericina_virus	3.1e-80	40.5
WP_125854406.1\|2253429_2254674_-	DUF1835 domain-containing protein	NA	NA	NA	NA
WP_125854405.1\|2255033_2256659_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.8e-53	39.1

DBSCAN-SWA_5

3396145 : 3457799

Feldmannia_species_virus(10.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009685919.1\|3396145_3396649_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009685920.1\|3396652_3397183_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_029886960.1\|3397201_3397738_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009685923.1\|3397768_3398296_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_054889819.1\|3398563_3400822_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	9.9e-30	22.5
WP_009685925.1\|3400828_3401290_+	response regulator	NA	NA	NA	NA
WP_047149737.1\|3401303_3403703_+	response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	5.8e-12	26.1
WP_009685928.1\|3404176_3404419_+	hypothetical protein	NA	NA	NA	NA
WP_009685929.1\|3404550_3405627_+	cell division protein ZapE	NA	NA	NA	NA
WP_047149738.1\|3405623_3407513_-	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	9.1e-53	29.3
WP_144188634.1\|3407691_3408558_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_115294378.1\|3408531_3409689_-	HPP family protein	NA	NA	NA	NA
WP_115294379.1\|3409941_3411258_-	sensor histidine kinase	NA	NA	NA	NA
WP_009685936.1\|3411254_3411923_-	response regulator transcription factor	NA	NA	NA	NA
WP_009685937.1\|3411923_3412238_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_009685938.1\|3412237_3412546_-	peptidase	NA	NA	NA	NA
WP_054881342.1\|3412747_3413827_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_009685940.1\|3413880_3414237_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_144188636.1\|3414250_3414847_-	hypothetical protein	NA	NA	NA	NA
WP_029888007.1\|3414975_3415479_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_047149740.1\|3415849_3418459_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_144188638.1\|3419064_3420255_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_054881603.1\|3420419_3423008_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_009683859.1\|3423132_3424260_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_029884943.1\|3424375_3425266_-	methylisocitrate lyase	NA	NA	NA	NA
WP_009683857.1\|3425262_3425979_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_029884944.1\|3426286_3426823_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_029884945.1\|3426828_3428364_+	inactive transglutaminase family protein	NA	NA	NA	NA
WP_009683854.1\|3428363_3429344_+	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_144188640.1\|3429503_3430847_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	4.2e-44	31.5
WP_009683852.1\|3430933_3431668_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_009683851.1\|3431720_3432695_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_009683850.1\|3432822_3433320_-	universal stress protein	NA	NA	NA	NA
WP_144188642.1\|3433446_3434394_-	putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_009683848.1\|3434626_3435703_+	3-deoxy-7-phosphoheptulonate synthase	A0A2I6UFP9	Klebsiella_phage	1.1e-82	50.5
WP_009683847.1\|3435752_3436034_-	N-acetyltransferase	NA	NA	NA	NA
WP_003259780.1\|3436542_3436794_+	hypothetical protein	NA	NA	NA	NA
WP_054912008.1\|3436923_3437901_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_009683845.1\|3438014_3438305_-	hypothetical protein	NA	NA	NA	NA
WP_104148439.1\|3438363_3438981_-	arylesterase	NA	NA	NA	NA
WP_009683843.1\|3438979_3439663_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.7e-07	26.9
WP_144188644.1\|3439662_3442170_+	ABC transporter permease	NA	NA	NA	NA
WP_144188646.1\|3442218_3442692_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_009683839.1\|3442702_3443011_-	hypothetical protein	NA	NA	NA	NA
WP_144188648.1\|3443259_3443697_-	DoxX family membrane protein	NA	NA	NA	NA
WP_029884954.1\|3443810_3445214_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_144188650.1\|3445367_3446162_+	hydrolase TatD	NA	NA	NA	NA
WP_144188652.1\|3446300_3447779_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-27	30.8
WP_009683834.1\|3447853_3448222_+	DUF962 domain-containing protein	NA	NA	NA	NA
WP_029884957.1\|3448245_3449043_-	thioesterase family protein	NA	NA	NA	NA
WP_029884958.1\|3449120_3449900_-	CHAD domain-containing protein	NA	NA	NA	NA
WP_003259403.1\|3449914_3450193_-	hypothetical protein	NA	NA	NA	NA
WP_009683830.1\|3450371_3451412_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_009683829.1\|3451478_3453350_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_009683828.1\|3453530_3453803_-	DNA-binding protein HU-beta	A3E2K9	Sodalis_phage	2.2e-21	64.0
WP_009683827.1\|3453955_3456352_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.4e-215	51.3
WP_009683826.1\|3456515_3457799_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.2e-138	58.1

DBSCAN-SWA_6

3637351 : 3722790

103

Pseudomonas_phage(46.94%)

tail,integrase,plate,terminase,tRNA

attL 3704487:3704502|attR 3723285:3723300

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009686345.1\|3637351_3637762_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_144188735.1\|3637765_3639532_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_029887180.1\|3639495_3640512_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_054905713.1\|3640508_3641063_+	hypothetical protein	NA	NA	NA	NA
WP_009686341.1\|3641059_3641854_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_144188737.1\|3641906_3643244_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009686339.1\|3643245_3644100_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_144188739.1\|3644232_3644754_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_144188741.1\|3644825_3646868_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.7e-28	26.8
WP_144188743.1\|3646882_3648238_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_009686334.1\|3648239_3648596_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_144188745.1\|3648600_3649725_+	filamentous hemagglutinin	NA	NA	NA	NA
WP_009686332.1\|3649721_3650111_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_009686331.1\|3650112_3650295_+	hypothetical protein	NA	NA	NA	NA
WP_144188747.1\|3652073_3652589_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_144188749.1\|3652831_3653392_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_009686324.1\|3653424_3655248_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003251380.1\|3655253_3655892_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_009686323.1\|3656131_3656563_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009686322.1\|3656680_3657190_-	ProQ/FinO family protein	NA	NA	NA	NA
WP_009686321.1\|3657273_3657828_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009686320.1\|3657972_3659331_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_115294461.1\|3659344_3660139_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_115294462.1\|3660206_3661553_-	glutamine synthetase	NA	NA	NA	NA
WP_009686317.1\|3661892_3662597_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_144189651.1\|3662624_3663296_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_144188751.1\|3663667_3665188_+	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA
WP_009686314.1\|3665426_3665954_+	DUF3455 domain-containing protein	NA	NA	NA	NA
WP_009686313.1\|3666057_3666606_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_115294464.1\|3666602_3667301_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_054911638.1\|3667489_3667792_+	chorismate mutase	NA	NA	NA	NA
WP_009686310.1\|3667816_3668005_-	DUF1737 domain-containing protein	NA	NA	NA	NA
WP_144189653.1\|3668678_3668984_-	S24 family peptidase	A0A1L5C2A3	Pseudoalteromonas_phage	2.5e-13	45.5
WP_144188753.1\|3669113_3669338_-	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	2.9e-27	82.4
WP_144188755.1\|3669351_3669882_-	DUF2514 family protein	NA	NA	NA	NA
WP_144188757.1\|3669878_3670367_-	glycoside hydrolase family protein	Q9MC90	Pseudomonas_phage	5.8e-36	48.1
WP_144188759.1\|3670422_3670647_-	hypothetical protein	NA	NA	NA	NA
WP_144188761.1\|3670707_3671067_-	hypothetical protein	A0A1Z1LW73	Synechococcus_phage	4.4e-09	47.7
WP_144188763.1\|3671063_3678725_-	DUF1983 domain-containing protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	62.2
WP_144188765.1\|3678781_3679360_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	6.8e-60	64.2
WP_125920173.1\|3679417_3679765_-	hypothetical protein	A0A1B0VMC6	Pseudomonas_phage	5.6e-17	44.1
WP_144188767.1\|3679789_3680131_-	hypothetical protein	NA	NA	NA	NA
WP_050492223.1\|3680339_3680990_-	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	6.8e-24	43.3
WP_144188769.1\|3681331_3681562_+	hypothetical protein	NA	NA	NA	NA
WP_144188771.1\|3681679_3682435_-\|tail	phage tail protein	A0A2H4J1J7	uncultured_Caudovirales_phage	8.5e-119	74.1
WP_144188773.1\|3682437_3683187_-\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	2.8e-122	77.5
WP_144188775.1\|3683196_3683535_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	1.3e-42	70.5
WP_144188777.1\|3683534_3686975_-\|tail	phage tail tape measure protein	A0A2H4JD96	uncultured_Caudovirales_phage	8.1e-217	51.1
WP_125855489.1\|3686978_3687230_-	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.5e-29	79.0
WP_144188779.1\|3687292_3687676_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	1.6e-41	62.2
WP_064314673.1\|3687685_3688345_-\|tail	phage tail protein	A0A0S2SYG8	Pseudomonas_phage	9.1e-85	71.4
WP_144188780.1\|3688384_3688813_-	hypothetical protein	A0A2H4J5P1	uncultured_Caudovirales_phage	2.5e-67	90.6
WP_144188782.1\|3688809_3689481_-	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	5.7e-58	52.7
WP_144188784.1\|3689483_3689870_-	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	7.8e-36	59.2
WP_144188786.1\|3689871_3690240_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	1.4e-26	54.3
WP_144188788.1\|3690239_3690536_-	hypothetical protein	NA	NA	NA	NA
WP_144188790.1\|3690578_3691547_-	hypothetical protein	A0A0H5ARK0	Pseudomonas_phage	5.7e-144	80.4
WP_144188792.1\|3691556_3692303_-	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	1.1e-86	73.2
WP_144188794.1\|3692455_3692884_-	hypothetical protein	A0A1B0VMG3	Pseudomonas_phage	4.3e-27	76.7
WP_144188796.1\|3692902_3693982_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	3.9e-101	52.9
WP_144188797.1\|3693981_3695394_-	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	3.1e-170	62.7
WP_144188799.1\|3695390_3696710_-\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	1.3e-242	91.1
WP_144188801.1\|3696684_3697161_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	4.7e-67	79.7
WP_144188803.1\|3697190_3697787_-	hypothetical protein	A0A0S2SYA5	Pseudomonas_phage	8.0e-88	77.3
WP_144188805.1\|3697872_3698076_+	hypothetical protein	NA	NA	NA	NA
WP_144188807.1\|3698107_3698356_-	hypothetical protein	NA	NA	NA	NA
WP_144188809.1\|3698355_3698544_-	hypothetical protein	NA	NA	NA	NA
WP_144188811.1\|3698722_3699097_-	hypothetical protein	NA	NA	NA	NA
WP_144188813.1\|3699086_3699488_-	hypothetical protein	NA	NA	NA	NA
WP_144188815.1\|3699525_3699783_-	hypothetical protein	NA	NA	NA	NA
WP_144188817.1\|3699916_3700606_-	hypothetical protein	Q9MC44	Pseudomonas_phage	1.4e-48	47.1
WP_144188819.1\|3701437_3702043_-	recombination protein NinG	A0A2H4JA27	uncultured_Caudovirales_phage	4.2e-76	71.9
WP_144188821.1\|3702131_3702602_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	1.0e-53	63.5
WP_144188823.1\|3703181_3703538_-	hypothetical protein	W6MWX0	Pseudomonas_phage	1.2e-14	44.8
WP_144188825.1\|3703540_3704347_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	4.3e-60	56.3
WP_144188827.1\|3704333_3705317_-	phage replication protein	A0A1B0VME0	Pseudomonas_phage	2.6e-112	71.6
3704487:3704502	attL	NA	NA	NA	NA
WP_144188829.1\|3705938_3706787_-	transporter	A0A2H4J5H6	uncultured_Caudovirales_phage	5.3e-53	46.9
WP_033696979.1\|3706872_3707052_-	hypothetical protein	NA	NA	NA	NA
WP_070086158.1\|3707070_3707259_-	hypothetical protein	B5WZX7	Pseudomonas_phage	8.5e-12	58.1
WP_144188835.1\|3707291_3707525_-	Cro/Cl family transcriptional regulator	A0A2H4J1L8	uncultured_Caudovirales_phage	3.5e-07	48.4
WP_144188837.1\|3707591_3708473_+	helix-turn-helix domain-containing protein	H2BD63	Pseudomonas_phage	3.3e-45	39.9
WP_144188839.1\|3708537_3708894_+	hypothetical protein	NA	NA	NA	NA
WP_144188841.1\|3708942_3709260_-	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	2.9e-20	51.4
WP_144188843.1\|3709599_3709800_-	hypothetical protein	NA	NA	NA	NA
WP_144188845.1\|3709902_3710547_+	hypothetical protein	A0A0U4IID7	Pseudomonas_phage	6.6e-104	82.7
WP_144188847.1\|3710822_3711155_+	hypothetical protein	NA	NA	NA	NA
WP_144188849.1\|3711151_3711406_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_144188851.1\|3711564_3711819_+	hypothetical protein	NA	NA	NA	NA
WP_061550579.1\|3711815_3712061_+	hypothetical protein	NA	NA	NA	NA
WP_144188853.1\|3712057_3712252_+	hypothetical protein	NA	NA	NA	NA
WP_144188854.1\|3712527_3713388_+	AAA family ATPase	A0A1B1P9H8	Acinetobacter_phage	4.1e-69	59.7
WP_144188856.1\|3713384_3713879_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.8e-45	71.1
WP_144188858.1\|3713888_3714077_+	hypothetical protein	NA	NA	NA	NA
WP_144188860.1\|3714158_3714524_+	hypothetical protein	A0A2H4J0L9	uncultured_Caudovirales_phage	9.0e-58	90.1
WP_144189655.1\|3714498_3714858_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	4.9e-16	49.0
WP_144188862.1\|3714921_3716856_+	DNA methyltransferase	Q5QF27	Pseudomonas_virus	7.6e-305	75.7
WP_144188864.1\|3718536_3718806_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	4.9e-29	74.4
WP_144188866.1\|3718802_3719327_+	hypothetical protein	A0A291I9C8	Pseudomonas_phage	6.1e-07	37.1
WP_144188868.1\|3719370_3719655_+	hypothetical protein	NA	NA	NA	NA
WP_144188870.1\|3719707_3720064_+	hypothetical protein	NA	NA	NA	NA
WP_144188872.1\|3720289_3720571_+	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	2.6e-33	79.8
WP_144188874.1\|3720539_3721682_-\|integrase	tyrosine-type recombinase/integrase	L7TP61	Pseudomonas_virus	1.5e-167	76.1
WP_144188876.1\|3721815_3722790_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
3723285:3723300	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041933

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection