CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041962	Xanthomonas citri pv. glycines strain 1018 plasmid unnamed1	0 crisprs	NA	0	0	0	0
NZ_CP041961	Xanthomonas citri pv. glycines strain 1018 chromosome, complete genome	4 crisprs	WYL,DEDDh,csa3,cas3,DinG	0	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041961_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041961_1

27351-27649

Orphan

Consensus_repeat	Method
TGGAAACGGTCAACGGC	PILER-CR
TGGAAACGGTCAATGGCAGCATC	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP041961_1

>merge|NZ_CP041961|1|27351-27649|PILER-CR,CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATCGAGATCGGTGCCGGTGCCCAAACCAAGAACGTGGAAACCGTCAACGGCGGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCGTGGAAACGGTCAACGGCTCGATCACGCTGGGCCAGAAAGTAACGGTGTCCGGCGGGCTGGAAACGGTCAATGGCAGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCGTGGAAACGGTCAACGGCAGCATCGGGCTGGTGGGAACCGAGCTCGGCAAGGGCATCGAGACGGTCAATGGCGACATC

>NZ_CP041961|1|1|27351-27532|PILER-CR
TGGAAACGGTCAACGGC	TCCATCGAGATCGGTGCCGGTGCCCAAACCAAGAACG
TGGAAACCGTCAACGGC	GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGC	TCGATCACGCTGGGCCAGAAAGTAACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGC

>NZ_CP041961|1|1|27351-27649|CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATC	GAGATCGGTGCCGGTGCCCAAACCAAGAACG
TGGAAACCGTCAACGGCGGCATC	CGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGCTCGATC	ACGCTGGGCCAGAAAGTAACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGCAGCATC	CTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCG
TGGAAACGGTCAACGGCAGCATC	GGGCTGGTGGGAACCGAGCTCGGCAAGGGCA
TCGAGACGGTCAATGGCGACATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041961.1\|WP_005912472.1\|28047_29844_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP041961.1\|WP_016849428.1\|20364_21705_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP041961.1\|WP_016851500.1\|35802_36861_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP041961.1\|WP_016851493.1\|30081_30525_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP041961.1\|WP_016851494.1\|30817_31951_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP041961.1\|WP_124632031.1\|36959_37463_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP041961.1\|WP_003482140.1\|34421_35495_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP041961.1\|WP_005912453.1\|14726_16187_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP041961.1\|WP_029827786.1\|39005_43478_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP041961.1\|WP_005927217.1\|19393_20095_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP041961.1\|WP_016851501.1\|37395_38877_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273553
NZ_CP041961.1\|WP_016850463.1\|24202_25729_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP041961.1\|WP_078585649.1\|35610_35817_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016851497.1\|32590_33643_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP041961.1\|WP_029827782.1\|23044_24037_+\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP041961.1\|WP_003482171.1\|22724_23045_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_CP041961.1\|WP_003482177.1\|21923_22616_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP041961.1\|WP_016849427.1\|18078_19206_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP041961.1\|WP_005912457.1\|17277_17868_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274398
NZ_CP041961.1\|WP_003482165.1\|25833_27069_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278

Protein	Function_ID	Function_description	E-value
NZ_CP041961.1\|WP_005912472.1\|28047_29844_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.52694e-122
NZ_CP041961.1\|WP_016849428.1\|20364_21705_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	7.3358e-134
NZ_CP041961.1\|WP_016851500.1\|35802_36861_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP041961.1\|WP_016851493.1\|30081_30525_-\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	3.33235e-05
NZ_CP041961.1\|WP_016851494.1\|30817_31951_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	1.41079e-59
NZ_CP041961.1\|WP_124632031.1\|36959_37463_-\|hypothetical-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	0.00388173
NZ_CP041961.1\|WP_003482140.1\|34421_35495_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	8.53846e-61
NZ_CP041961.1\|WP_005912453.1\|14726_16187_-\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	4.62895e-152
NZ_CP041961.1\|WP_005927217.1\|19393_20095_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.29017e-07
NZ_CP041961.1\|WP_016851501.1\|37395_38877_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP041961.1\|WP_016850463.1\|24202_25729_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.85747e-128
NZ_CP041961.1\|WP_029827786.1\|39005_43478_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP041961.1\|WP_016851497.1\|32590_33643_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	1.21893e-58
NZ_CP041961.1\|WP_029827782.1\|23044_24037_+\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	1.17291e-144
NZ_CP041961.1\|WP_003482171.1\|22724_23045_+\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	1.29038e-51
NZ_CP041961.1\|WP_003482177.1\|21923_22616_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.19314e-25
NZ_CP041961.1\|WP_016849427.1\|18078_19206_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	2.76412e-22
NZ_CP041961.1\|WP_005912457.1\|17277_17868_+\|hypothetical-protein	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	0.00183523
NZ_CP041961.1\|WP_003482165.1\|25833_27069_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	7.70088e-91

>NZ_CP041961.1|WP_003482165.1|25833_27069_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MWLAVGVLACTLLGSMGASAQSQRETERKLQQLRDELKTISADRRELEGKRGTAAQQLRQADEKVAKTARALSETEAAMRAQEQHLSTLQQERAQLQRGLQNQRAQLAALLRAADQVGRNAPLKVLLSQDTVGDAARMLADHRYVQNARAQRIHALTTQLDALATVEQDIATRRQALDAARAQQKAQAATLQKDRSQQAATVAQLDDRYKQRAEREKAIGQDAKALEQLLANLRAAAAKAEAERRAAARRAAAEAAAQAKRSKTERSDRPGKTPPKVVANAPAPKVGGLSWPVAGNLLARFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLRDAGATIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQRR
>NZ_CP041961.1|WP_016850463.1|24202_25729_-|PDZ-domain-containing-protein
MRVAVLSVALSLALFASPGWAQKAGPAAAQASADDPEANEAAVSKVPLDEIRRFVAVYNAVKQAYVDPVEDKKLMHAAVRGLLSDLDPHSTYFDKEDAEAFDEQATGAYDGIGVELLQQQDNTLKVIAPIDDTPAARAGIRAGDVIVAIDGKPIDASKAMEPLRGESGSKVVLTIMRDKTPKPFDVTLQRETIRVASVRSKLLEPGFGYIRISTFQADTGADFQKNLKQLQAGGKLRGLVLDLRSNPGGLLTSAVQVADDLLDKGNIVSTRGRISISDAKFDATPGDLLNGAPVVVLVDAGSASASEVLAGALRDNKRARIIGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQASGIVPDVLLTPEPQPGDADVPASLTDYSEATLPGHLRGDDEGEEGYSAGDVLPGDGPITEALAELKQPGAAAKAQAARKAKAQAAQKAKAANKTGAEPKPAAARPATTDKPRSAEPAGKAKPATTPPAPAEPVQPTTPTDKPAEPVN
>NZ_CP041961.1|WP_029827782.1|23044_24037_+|D-2-hydroxyacid-dehydrogenase-family-protein
MRIVVPDDYQGAVAQLPCLQQLQGHQVQVLGALDAELDARAACLADADALVLIRERTRVDAALLQRLPRLKLISQTGRVGAHVDVAACTALGVAVAEGVGSPVAPAELTWALILSASRRLTDYQHALQQGRWQALGDPGLGRVLHGRTLGIWSYGRIGQRVAGFGRAFGMQVVVWGGEASCAQAARDGFAVAGSREDLFERSDVLSLHRRLTAQTRHDVTAQDLARMRADALLVNTSRAELIAPGALLAALDAGRPAQAALDVFEHEPVLDPRDPLLRHARVLATPHLGYVERDSYALYFDAAFDNVLAFAAGTPRNLVNPEVLATTQRV
>NZ_CP041961.1|WP_003482171.1|22724_23045_+|DUF1820-family-protein
MSKSLYKVTFLNHGKVYELYAREVTGSHLWGFNQIGELVFDVHDGLVVDPTEERLREEFGNTRTLHLPMQSIVRIEEVEKKGQSVIRDATTGDKVVTPFPSPIKPR
>NZ_CP041961.1|WP_003482177.1|21923_22616_+|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKPTPRWAVPLLFATVWLAYLWSISRPGEARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTPDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPAFGMVAWSAHIAGFVFGIVYGLYVRAAIARRLRKRHGF
>NZ_CP041961.1|WP_016849428.1|20364_21705_-|outer-membrane-protein-transport-protein
MSTASTLSRATLLAVGIAGVLAVGQAHGAAFQLKENSAKGLGRAFAGSGSAPDDASIIATNPAGMRQLDGRLFQADVSAISFSAKFQPDTAAYANGAPVSGGNGGDAGMIAPVPAMYFHVPFGENDNMHLGTSLTVPFGFKTEYDRDWVGRYHGTKTELQAIDFNVAFSYDVNPYVSFGASVFAERLDIDLANAVDFGSVLAARRVPGFAPGSADGYSRIKGDSTEVGFTLGGLFSIDENTHIGFSYRSQVEHKITDGTADFTVPGSAAAVLSVAAPGTFVDTKGRATVKLPASATASFTHNVNEQWSIMADVTRTAWSKFDQVTVDFASNQPDSVLDFSYRDTTFASIGADYRLSDTVILRGGLAYDQTPTTAEHRDVRVPDASRKWVSLGMSWRPSAQTEYNFGYTHLFTSDPTSDTRSATGDRLAGSYDVKGDVLAASINYKF
>NZ_CP041961.1|WP_005927217.1|19393_20095_-|2OG-Fe(II)-oxygenase
MSQPDFIQITDNAIAHEDCVAIVQRMRQSQQLHPGRIGGGVFPDLKHSRDLRISGMAEWAEVENRLQQAVFEGVLTYLRQYPQALISPLMLQVTTADGRPHRLVAEDIVQMSDQALGDLARTCLRPGAINLQWYTADQGGYPYWHCELYPRDANADTLHRHLLWTLYLNDDFAQGETEFLFQQRKARPRTGSLLIAPTAFTHTHRGNRPVGGDKFIATSWILFQSAQALYGGE
>NZ_CP041961.1|WP_016849427.1|18078_19206_-|PA0069-family-radical-SAM-protein
MQKNSFPSASAAAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGALDADGETAMRPKTVVAEEIARSIISRNNSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAERRLRISRQCLEVLGEARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALHAAAVPVGVLVAPVIPMINDKELERILDAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLVQQMRGGKDYDSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTHFRPPRPDTPQLNLF
>NZ_CP041961.1|WP_005912457.1|17277_17868_+|hypothetical-protein
MRTFRIRGRRLGLRFRETVLLAGTLACSVLFVATQRQIGLLCYAVAPILLLAFFVLQADLVWRGHKTAGAAFIMAVAAWLTFSVLATYAFSGLVHTHNFLGTWLKALLGAGFFAVLFSLSVLLARKRSVSLYWYLAGSLAVVIAVAAVHPENSGDITVNCERGSCAAGIIAFWPGAFQAADGKRPISVVLPHSGGD
>NZ_CP041961.1|WP_005912453.1|14726_16187_-|cardiolipin-synthase
MLALAQGAWEWLATIPHLEALLLAAYVLYLLWIAGWIVLQKREPVATLSWVLSLAALPYLGLLIYYWLGPQKVKRQRLRRGRSRSGMESYSSVCPPDADCTELAKIAQSTTGLAPSSATEVHWLVDGAATYAAIIEAIRGARDHIHLEYYIFQPDHSGTAICAALMERARAGVKVRLLMDAIGSSAMTRRALRTLREAGVETAWFHPSQLLKPFKRPWLNLRTHRKVIVIDGRIGFTGGINVTDDENEQVRKQAYRDLHVRLQGHVVRSLQLVFLEDWLYATSQGRAAFHGQQLWPDDMPTRAQGTVDAQVLVSGPDSSWEAIHRLMVAAIHEAKHRVWLVTPYFVPGEAARMALTSAALGGLDVRLLVPRVSDSRLVTYAARSYFDELLEAGVRIYEYGPRMLHTKALLADDDVCIVGSANFDSRSFRLNFELSMLFRDQAVAAEMAGLIGTDLQQAQEVQFARHRPLWRSRLPEAFARLLSPLL
>NZ_CP041961.1|WP_005912472.1|28047_29844_+|M28-family-peptidase
MPRKILLCLAATLALAGCKREPADAPSAPAAQTPTDSAPSAPVSRHTFSPDMTTGDFAELVKTLASDDFEGRGPGTPGEEKTVTYIRDQMQRIGLQPGNGDSWFQEVPMVETTADASTAPSLRSGEQTRTLAFGTDIVVGTRTGQAEVKLDNSELVFVGYGVDAPEQQWNDYAGQEWKGKTVVMFVNDPGFHTDDAKLFDGKRMTYYGRWTYKFEEAARKGAAAALIVHDTPGASYGWDVVKNSWSGPQYDLPAKDDPDPRLPVQGWISAETARQLFANAGLDLTQAYKDASKRGFKPVPLKASWSVDLKSTIAAKTSRNVVGVLPGTSHADEAVLYMAHWDHLGKHPGERGDNIYNGAVDNATGVAGILEIADAFAHQDPKPTRSVVFLAVTLEESGLLGSKYYVANPSFPLDKIAAVINLDAMSVAGRARDVTVVGMGSSELEDILKPIAAMQGRTLHAEATPQSGSYFRSDHFNFAKAGVPALYADGGEDLREGGTAAGRAAAEDYGRHRYHAPGDEYDAATWKLDGTIEDLQVVYGVGKEVAAGERWPNWYPGNPFKAARDRMMAGRPGTSAASAQPADATSRATQTNMAKPPR
>NZ_CP041961.1|WP_016851493.1|30081_30525_-|PepSY-domain-containing-protein
MTQRLMKTALIGVLALVSQGALAQAADKPAKALTSGEVTSMLTAKGYTKVHDLKFEHGVWTADARSGDGKDVDVRIDPVTGRVYGDQTTSKLSEADVRASLSTGGYADVHDLKFNDGLWKADAKRNGQKVELHVDPEDGHVVSVEND
>NZ_CP041961.1|WP_016851494.1|30817_31951_-|glycoside-hydrolase-family-5-protein
MSAVCFSLRALLRSTLLFIVFGSLPLAHAQTRALTYAGVNLSGAEFASSKKPGVLNKDYMYAAASDYTYFAGVGMNTIRLPILWERLQPTASGELDPAQLALLQQAVARAKAAGMYLVIDIHNYAKYYGYKIGSPEVPVATFTDLWRRLALAFNSDNVVMFGLMNEPNNISASEWAGAAQAAIDAIRRTGANNLILVPGALWTGAHSWYSTTNDGYSNATALTSIYDPLDRYAFEVHQYLDADSSGTSSTCVSSTIGAERLRNFTQWLRTNRKRGFLAEFGTANNAVCNQALQGMLAYMETNADVWLGWTWWAAGSWWNLSYAYSVHPNKDGTDKPQMAILSPQAALATRAPVAAAAARTSAASTSATSTSVARTAR
>NZ_CP041961.1|WP_016851497.1|32590_33643_-|glycoside-hydrolase-family-5-protein
MKSLTTHTRRLRCRALSFLLLAAMPLAQAQSATGLKYAGVNLSGAEIKSSQKPGVLDIDYRYPAADEYAYFAGKHINTVRLPILWERLQPKTGGELDPAQLALIRQAVANAKAAKMYVIVDVHNYAKYYGYTIGSTKVPISTFNDLWRRLAIAFKSDNAVIFGLMNEPYDIDPQAWATAAQASIDTIRKTGATNLILVPGALWTGAHSWYSTVAGQSNAVAMASIRDPLNRYAIEAHQYLDADSSGTSGGCVSATVGVERLRSFTEWLRLNKKRGFLAEFGTGNTVTCNLALNGMLGYMESNSDVWMGWSWWAAGAWWSGAYPFNVQPDAQGRDKPQMSILSPRARRITD
>NZ_CP041961.1|WP_003482140.1|34421_35495_-|glycoside-hydrolase-family-5-protein
MFRTPPHFPRLRIAALALTLLAAGPLAQAKEPPGPRRETAGLKYVGVNLSGAEFNSRKKPGTLFKDYTYPAASDFSYFAGKGMNTIRLPFLWERVQPELNGPLDQAQLGLIKKSLEAAKANKQYLILDLHNYATYSGKRIGTSDVPAGALADLWRRLALEFKDDKAVIFGLMNEPNGISAPDWANAAQGTITAIRKTGAKNLILVPGTAYTGAHSWRSTSYGVSNAKALEILKDPGNNLAFEAHQYLDKDYSGTKPVCTSDSVGQEKLQGFTSWLRENKQKGFLGEFATANNPVCDKALEGMLTYMEKNSDVWLGWTWWAAGAWWKPDYPFTVQPGKDGSDKPQMAILSKYARRAGK
>NZ_CP041961.1|WP_078585649.1|35610_35817_-|hypothetical-protein
MGCAHGKTPGCCVVGKLRQQRKRRIASLKRADVALLRQCVLPGLLRTRAHPHDAPCACSQAVKSGPCA
>NZ_CP041961.1|WP_016851500.1|35802_36861_+|NAD(P)-dependent-alcohol-dehydrogenase
MSTAHAYAAQAADQPLAPFVFERRAPGLNDVQIDIAYCGVCHSDLHTARNEWHNTLYPSVPGHEIVGRVTAVGNAVTGFKVGDLAGVGCMVDSCRSCASCQEGEEQYCEAGFTGTYNGPMFGGGENTYGGYSDHIVVDQKYVLRITHSDNLAAVAPLLCAGITTYSPLAHWKVGPGQKVGVVGLGGLGHMAVKIAKAMGATVVLFTTSESKRADALRLGASEVVISKDEAQMAAQYNTLDFILNTVAAPHNLDPFLNALKRDGAMVLVGVPEQSHPSPAVFNLVMKRRTLAGSLIGGIRQTQEMLDFCAKHNIVSDIETIRADQINEAYERMLKSDVKYRFVIDMATLDKAA
>NZ_CP041961.1|WP_124632031.1|36959_37463_-|hypothetical-protein
MRREASCSCSGSKRRSRSRLRRSRRGCTRYEIAGTRSGRSAHFPLTSLQPSPDSIWLIGSRANDRATHQSDTDLIVFGSEAFIRAAIAQIAQPQDVDCLGVFNGDDYRGPWQEKSGSLSKLEWRQIDADSARYIGTKWMPDGESSREFGALMGDLVDREELAIRLWP
>NZ_CP041961.1|WP_016851501.1|37395_38877_-|FAD-dependent-oxidoreductase
MSRKQAFQFLDLPRTMPTRIPVELRTSGDWGELYGRFDKADAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQEDRIIEAAALCHSTNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTAFKMGWRPDLGNVQASGHRVAVIGAGPAGLACADRLARAGIEAVVYDRYEQIGGLLQFGIPSFKLDKSVIGKRREILEGMGVQFRLGVEVGRDISIEQLLGEYDAVFLGTGAYRYTDGGLPGQDLKNVLPALPFLVQNSRIVSGNDPHGRPIAGWEDQLALPDLTGKRVVVLGGGDTGMDCVRSAIRLGAAKVTCAYRRDEASMPGSAREVANAREEGVRFLFNRQPLSIESGADDEAIGVTVVETKLGEPDASGRRNAVPVEGSESLLEADVVIIAFGFSPTLPDWLASQGVDAGGNGRIVAPSDGNGRLPYQTSNPRLFAGGDCVRGADLVVTAVAEGRDAAGSIVQLLGVKAQVKEPAAA
>NZ_CP041961.1|WP_029827786.1|39005_43478_-|glutamate-synthase-large-subunit
MAPRTRQGLNDDGLYNSVRDERDACGFGMVAQLDDQPSRALVDTAIAALSRMTHRGGVAADGLTGDGCGLLIRKPDAFLRGLARDAGITLGTRYAAGVVFLPLDEADAARCRAELEAQLHNAGVHFRGWRVVPTDDSVCGQLARDTLPRIEQVFVDAGAEQTEDGFTLALFLARRRAEQALHAVEHFYVTTLSPNGISYKGMVLPDKLSTFYPDLQRSDLSSSAIVFHQRFSTNTLPRWPLAHPFRLLAHNGEINTIEGNRRWAQARSKVWQTPRFDIAQFDPVISMHGSDSQSLDNMLELLIAGGMDLLQALRILVPPATQSLEFKDADLAAFYEFYGLNTEPWDGPAGIVACDSRYAACMLDRNGLRPARWMLTSDRHFLVASEAGVWELPAERITRKGKLGPGEMMAIDLKRGDLLDSDAIDRINRARAPYKQWLQQGVTYLQTELIDPSLVEEPFSEQTLRSYHKLFQLSTEEVEQVLRPLAETEQEATGSMGDDTPMAVLSRQTRPLYDYFRQAFAQVTNPPIDPLREGIAMSLTTQLGRETNIFHAGAETVNHVILNSPVLSQRKLRQLLKMEQYVERNRLIDLSYSLEEGLKAGLERICQEVEAAARAGAVMLLLSDRYPVPDRPMAHALLATGAVHHHLCKVGLRCDVNLIIETGTARDPHHMACLLGVGATAVYPYLAYQTLFDLGRRGILQLSKGGEQSQIGRRYRKGIYKGLSKIISKMGICTIASYRGAQLFEIVGLDPDVVDLCFADTPARIGGVDLARLDTEARELTVRAWNDQLKPEVGGLLKYVHGGEYHMYNPDVVMTLQRATRTGDAGDWQKYVAAVHARPASTLRDLVQLKRAHTPTPLDDVAPAEDVLRRFDSAAISLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGTEKRSKIKQVASGRFGVTPEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAKPGIGLISPPPHHDIYSIEDLAQLIYDLKQVNPTALVSVKLVAHAGVGTIAAGVVKAGADLITVSGHDGGTGASPVSSIRYAGVPWELGVAESHQALVANDLRERTILQTDGGLKTGLDVVKAALLGADSFGFGTAPMIVLGCKYLRICHLNNCATGVATQDERLRAGYFTGLPERVEHFFRLLAEEVRQWLSYLGVRSLDEIVGRTDLLEQLDVSPRPGVKVDLSRLLTHAQYDGSHCAAQRLYESPDSLATQMDGLLADAIANKSGGDHRFLIHNTDRSIGARLSGAIARAHGNHGMSDAPLNLRFRGTAGQSFGAFNAGGLQLELEGEANDYVGKGMAGGRLVVRPPRGARFEARNTPIVGNTCLYGATGGELFAAGRAGERFAVRNSGALAVVEGAGDHCCEYMTDGVVLVLGKVGLNFGAGFTGGLAYVLDIERDFVDRYNHELIDIHRVSAEGFENHRQHLHTLISRHRELTGSIWAQQILDEFRDYIGKFWLVKPKAASIESLTESLRRAA

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Crispr_ID: NZ_CP041961_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041961_2

309810-309994

Orphan

Consensus_repeat	Method
TGCTCGGCCGAAGGGCGCACCTGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP041961_2

>merge|NZ_CP041961|2|309810-309994|CRISPRCasFinder
TGCTCGGCCGAAGGGCGCACCTGCACCGCCGCCAAGGTGACGATGCGCGGGCCGGCCTGTTCGGAGGCCAGGGCGGCCAATTGCTCGGCCGAGGGGCGCACCTGCACGGCGGCCAGGGTGTGGATGCCGCTGTCGCGTTCCAGTGTCTGCTGGGCGAGCTGGTCGGCGGCCGGGCGAACCTGCAC

>NZ_CP041961|2|2|309810-309994|CRISPRCasFinder
TGCTCGGCCGAAGGGCGCACCTGCAC	CGCCGCCAAGGTGACGATGCGCGGGCCGGCCTGTTCGGAGGCCAGGGCGGCCAAT
TGCTCGGCCGAGGGGCGCACCTGCAC	GGCGGCCAGGGTGTGGATGCCGCTGTCGCGTTCCAGTGTCTGCTGGGCGAGC
TGGTCGGCGGCCGGGCGAACCTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041961.1\|WP_029827832.1\|305982_306735_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016849671.1\|314374_314758_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP041961.1\|WP_026006950.1\|315080_316742_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443
NZ_CP041961.1\|WP_003488368.1\|299292_299616_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_033479489.1\|312140_313202_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP041961.1\|WP_033483032.1\|301241_302969_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP041961.1\|WP_016850613.1\|307553_308783_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP041961.1\|WP_016850614.1\|306837_307461_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_005912231.1\|316972_317983_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552
NZ_CP041961.1\|WP_003488348.1\|309131_309608_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP041961.1\|WP_087944846.1\|318610_318880_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_003468167.1\|318047_318206_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP041961.1\|WP_016849538.1\|303018_304461_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP041961.1\|WP_005912222.1\|310904_311921_+\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP041961.1\|WP_016849537.1\|304445_305792_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP041961.1\|WP_016849540.1\|300371_301031_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235770
NZ_CP041961.1\|WP_005912258.1\|318803_319907_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP041961.1\|WP_003488365.1\|299612_300365_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP041961.1\|WP_016849672.1\|313317_314220_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|235135
NZ_CP041961.1\|WP_003488921.1\|310482_310803_+\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679

Protein	Function_ID	Function_description	E-value
NZ_CP041961.1\|WP_033479489.1\|312140_313202_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	3.27769e-66
NZ_CP041961.1\|WP_016849671.1\|314374_314758_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	3.26554e-20
NZ_CP041961.1\|WP_026006950.1\|315080_316742_+\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
NZ_CP041961.1\|WP_033483032.1\|301241_302969_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP041961.1\|WP_016850613.1\|307553_308783_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.02349e-20
NZ_CP041961.1\|WP_005912231.1\|316972_317983_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.39854e-82
NZ_CP041961.1\|WP_003488348.1\|309131_309608_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.47465e-81
NZ_CP041961.1\|WP_003468167.1\|318047_318206_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00222793
NZ_CP041961.1\|WP_016849538.1\|303018_304461_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.86755e-32
NZ_CP041961.1\|WP_005912222.1\|310904_311921_+\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP041961.1\|WP_016849537.1\|304445_305792_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	7.3029e-175
NZ_CP041961.1\|WP_016849540.1\|300371_301031_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|235770	PRK06288, PRK06288, RNA polymerase sigma factor WhiG; Reviewed.	1.51354e-22
NZ_CP041961.1\|WP_005912258.1\|318803_319907_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
NZ_CP041961.1\|WP_003488365.1\|299612_300365_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.19872e-96
NZ_CP041961.1\|WP_016849672.1\|313317_314220_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|235135	PRK03592, PRK03592, haloalkane dehalogenase; Provisional.	1.15519e-47
NZ_CP041961.1\|WP_003488921.1\|310482_310803_+\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	9.95984e-10

>NZ_CP041961.1|WP_003488348.1|309131_309608_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHADLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
>NZ_CP041961.1|WP_016850613.1|307553_308783_+|MFS-transporter
MPMTRTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGALALVAVLAIPAAAIDHRAARGLASNDGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYGMAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAGASVQAETML
>NZ_CP041961.1|WP_016850614.1|306837_307461_+|hypothetical-protein
MHWVDPDFLPATRGTLARFLLNPKADIDGLLLTDGTEVHTPPHLSEALLKALKPGSALTVRGLKPRDVEMLVALAIDPEGGKRILDEGPHGPHAKPKPKPKPPGKPPKPEVAQHSGTITRLLHGPHGQVHGVLLDDAVTVRFPPHAGGDFAKQLVVGKPLVAEGETKATPHGVLIHAHALGGKAATLKQIEHPPHGPAHKPKPKPKH
>NZ_CP041961.1|WP_029827832.1|305982_306735_+|hypothetical-protein
MMRQTVLAIALACTIGAAAAQVAAPPPPPAPNGPIGGPPAPPTPVAATPVSVSGTVERFLLNPNGDVDGLWLRDGTQVGFPPHLSSEVKAAVRAGDSVVVKGFRLGNLPVLQVSSIRSGRSGREVVDRPPTFGAAPPPPPTPGQLTPLQSDGTIQRLVYGPAGEINGALVSDGTVVRMPPHLALQFADLLRAGAPLSASGLGVATPDGRAIEATQLGRDRSSLRALFTAPRPDGPLPPPPPGTPVPPAGR
>NZ_CP041961.1|WP_016849537.1|304445_305792_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MARILIIDDDAAFRTTLQATLRSLGHTAVAAENGPDGLARLSEGGIDMAFVDFRMPGMDGIAVLRARLDDAQARQVPLVMLTAHVSSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALLSRADAQAAATDALSAPVEDDDALVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELAARALHRASPRASAPFVAVNCAAIPLELMESELFGHRKGAFSGASSDRRGLIREADGGTLFLDEIGDMPLPMQAKLLRFLQEGEVTPLGGSGPQKVDVRVLAATHRDLAACVADGRFRSDLRYRLNVVPIELPPLRERGQDILLLAQHFLSANAARAQSLSPAAQERLLAHRWPGNVRELRNVMQRSQVLVRGASIDAADLEEALGEAGEAPPNGASALTGTLPEAVAQLEKRMIQSALEQSQGNRAEAARRLGIHRQLLYRKLEEYGL
>NZ_CP041961.1|WP_016849538.1|303018_304461_+|HAMP-domain-containing-histidine-kinase
MPRSLLRQLLLIWMVIVAACVGVATMLYGLYRQTEGVRLEEARQQLGGQCARIVQRYAGASEAARRGDDGAGLAAVVVQLVLADAPGVEGGVWDLHKGFVAYAYPTYDGSDHKTDIPAAEWANIVNAAQQSVTTKQAAQYRRDGRREVLLISACPLASGSAAWTMTRVPASKADAWRPLVVGMLLIFAMVAISAIALGVLVRRWSQRLQRIQQALAADTETPHIPPTGTPELDRLGAAVNDYAQRNAQALAQTRRLADELSRHERLAALGRMTATVAHEIRNPIATMRLALENEIARGDATPDDAAHGELMLGQIRRLDGVVESLLGMVQPIRLQLETVVVQDWLATLLEHGPLPPGTPPPRVLLPAAPLRWALDPQQLGRAVHNLLRNAAQHADPGSEVTLQAAAVEGMLQLQVCNRGAPIAEPIAAHLFEPFVSGRADGNGLGLALVREIARAHGGHARYAHADGLTHFILELPWRAS
>NZ_CP041961.1|WP_033483032.1|301241_302969_+|ubiquinone-dependent-pyruvate-dehydrogenase
MAKKRTLARFLAETLQSAGVERIWGVTGDSLNGLTDALREMQTIEWMHVRHEEVAAFAAGAEAAVTGQLAVCAGSCGPGNLHLINGLFDCHRSRQPVLAIAAHIPSSEIGLSYFQETHPQELFRECSHFVEMVTNPAQLPEVLHRAMRTAILQQGVAVVVIPGDIALLEVDKHVSSAWPALRQPRVLPAAEDVRQLAELLQQSKAVTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWDNPFDVGMTGLIGFSSGYHAMLNCDTLLMLGTDFPYRQFYPKDATIVQVDRDPSALGRRTPLQLGIAADVGETIAALLPQLQRREERGFLEKSLAHYRKAREGLDDLAVPADPGQPLHPQFVTRLISQIADQDAVFTCDVGTPTVWAARYLRMNGKRRLLGSFNHGSMANAMPQALGAQAAFPGRQVISLSGDGGFAMLMGDFISLAQLHLPVKVVVFNNASLGFVAMEMKAAGYLDTGTELRNPDFAAMSNAMGILGIRVDESSQLERALRQAFAHSGPALVDVRVATQELAVPPAIKLEQAKGMGLYLLKAVMSGRGDEVIALVKTNLR
>NZ_CP041961.1|WP_016849540.1|300371_301031_+|sigma-70-family-RNA-polymerase-sigma-factor
MDGEALVAELWRRFKADHDLQARDFLVTEYSPWAKLVAADVYRRIGRGDLDWADHLQNAHVGMLEAMTRYDPSRAIPFTLYAKRRVRGAVFNGVRQQKRSSPVEDAIDVVADDIGGLESFIGSILEIATQHLVEHATDAWPGRHLAEEQARGILAQAMLQLAPRTREIFISHYYLHKPFVQIAGELGVTKGRVSQLHSQGLGILRTQLNERCFQRGDFL
>NZ_CP041961.1|WP_003488365.1|299612_300365_+|flagellar-type-III-secretion-system-pore-protein-FliP
MTRLHAGRRLLAGLAAVGLLVVATTACADPLGELMNAAGKQEFSSTLRVFVLMTMLSFIPVIVIGMTCFTRIIVVLALLRHALGIPQTPPNSVLITLAMLLTLFSMGPVLDKVQRDAVSPYLANQITATEAVSRATPALRDFMVRQTRESDLLAVTEMARAAPPRTVEDIRFTHLAAAFILSELKTAFQMGFVIFLPFLMIDLVVSAVLMALGIIMLPPATVSLPLKLLLFILIDGWVLVSRTLLGSIWS
>NZ_CP041961.1|WP_003488368.1|299292_299616_+|hypothetical-protein
MPSAIPYRSDTVLSAASLSPVLIWTTVLLAVLIAVLVWLKKKGVIARWQGGAQGAVAAGAIVKRSEYRVSRHTVVHLLEIEGERIVVAESRGQISLQRLGPTAGAST
>NZ_CP041961.1|WP_003488921.1|310482_310803_+|DUF4156-domain-containing-protein
MRVLMLSVLVATSTAACTWVPIEQSGKSVRVLPAGPVPAGCQQQGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPGANANAVQAQGQPADGSQRFNAFRCPPR
>NZ_CP041961.1|WP_005912222.1|310904_311921_+|3-oxoacyl-ACP-synthase-III
MLFQNVSIAGLAHVDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFMAARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW
>NZ_CP041961.1|WP_033479489.1|312140_313202_+|Fic-family-protein
MVALVARKELADQALGRLDGITLMLPDPELFLYQYVRKEALLSSQIEGTQSSLSDLLLFEMDAAPGVPIDDVEEVSNYVAALNHGLRRLREDDFPLSLRLIREMHALLLQGGRGASKQPGEFRRSQVWVGGASPALAHFVPPPPDALPDTLAALEQFLHASQGQMPSLVKAALAHVQFETIHPFSDGNGRLGRLLITLILCSEGVLREPSLYLSLYFKRRRADYYDRLNAVRLNGDWEGWLGFFLDGVAETAQQAVDTAQRLLALLARDRARIAALGQRAGNVGLVFEQFARRVVLAVPQVAPHLSLSVPTIRAAVRTLQELDIVNELTGQQRHRIFAYQAYLDILSEGAQPL
>NZ_CP041961.1|WP_016849672.1|313317_314220_+|alpha/beta-fold-hydrolase
MNYPGYPFPPKRLEVRPGVAMSYLDEGPRDGEVVVMLHGNPSWSYLWRHLVSGLSDRYRCIVPDHIGMGLSDKPDDAPDAQPRYDYTLQSRVDDLDTLLRHLGITGPVTLAVHDWGGMIGFSWALSHHAQVKRLVITNTAAFPLPAEKPMPWQIAMGRHWRLGEWFIRTFNAFSSGASWLGVSRPMPSDVRRAYVAPYNTWRNRISTIRFMQDIPLSPADKGWSLLERSAQALPSFADRPAFIAWGLRDICFDKHFLAGFRKALPQAEVTAFDDANHYVLEDKHEVLVPAIRAFLERNRL
>NZ_CP041961.1|WP_016849671.1|314374_314758_-|YkgJ-family-cysteine-cluster-protein
MAHPCLTCGACCAYFRVSFHWSEADPALGGRVPIELTEALRTHERAMRGTSQSQPRCIALDADIGRYSRCSIHDRRPSSCAAVPASLEFGQRSAQCDKSRLAHGLHALTDADWVGVDDAQRNPLPPV
>NZ_CP041961.1|WP_026006950.1|315080_316742_+|AMP-binding-protein
MTTLCNIAATLPQLARERPDQIAIRCPGGRGANGFAAYDVTLSYAELDARSDAIAAGLARHGIGRGARAVVMVRPSPEFFLLMFALFKAGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIALAQLARRLLRWARSATQIVTVGGRYGWGGVTLARVERDGAGAGSQLADTAPDDVAAILFTSGSTGVPKGVVYRHRHFVGQIELLRNAFGMQPGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPGSADPRKLHDAINRFGVTQLFGSPALMRVLADYGQPLPNVRLATSAGAPVPPDVVAKIRALLPADAQFWTPYGATECLPVAAIEGRTLDATRAATEAGAGTCVGHVVPPNQVRIIAIDDAAIADWSGVRELATGEVGEITVAGPTATDTYFNRDAATRIAKIRECCSDGSERVVHRMGDVGYVDAEGRLWFCGRKTHRVEAASGPLYTEQVEPVFNVHRQVRRTALVGVGAPGQQQPVLCVELQPGVSASAFAQVESDLRALGAAHPHTAGVTRFLRHSGFPVDIRHNAKIGRETLAVWAAQQLHKRG
>NZ_CP041961.1|WP_005912231.1|316972_317983_+|NAD-dependent-epimerase/dehydratase-family-protein
MKVLVTGGGGFLGQALCRGLRARGHEVVSFQRGDYPVLQRLGVGQIRGDLADPQAVRHAFAGIDAVFHNAAKAGAWGSYDSYHQANVVGTQNVIEACRANGVPRLIYTSTPSVTHRATNPVEGLGADEVPYGDDLRAAYAATKAIAERAVLAANDAQLATVALRPRLIWGPGDNHLLPRLAARARAGRLRMVGDGGNLVDSTYIDNAAQAHFDAFEHLAVGAACAGKAYFISNGEPLPMRELLNRLLAAVDAPAVTRSLSFNTAYRIGAVCETLWPLLRLPGEVPLTRFLVEQLCTPHWYSMEPARRDFGYVPRISIEEGLQRLRSSSSNDIAITR
>NZ_CP041961.1|WP_003468167.1|318047_318206_+|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRRGKV
>NZ_CP041961.1|WP_087944846.1|318610_318880_+|hypothetical-protein
MRRVLVQREQQAVSRRGDAGMPGHCQQRSEAIGIEQRQSVGMCVVECKRRVVVVRLMACSGGSAINAVEPHCAASGRRHAVLERAQSTA
>NZ_CP041961.1|WP_005912258.1|318803_319907_-|D-alanine--D-alanine-ligase
MRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPLLIGIDKQGQWHINNSDSFLLHADDPARIALHRSGRGVALLPGAHQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFACFNRHTAAMADVDALIAQLGLPLFVKPANQGSSVGVSQVRSADQFPAALALALAYDHKVLVEAAIAGREIECAVLGNAAPQASVCGEVVVHDAFYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGMARVDVFLCADGRIVINEINTLPGFTRISMYPKLWQASGLDYRGLITRLIELALERHADDHLLRSAVQPH

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Crispr_ID: NZ_CP041961_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041961_3

2352439-2352533

Orphan

Consensus_repeat	Method
GGGTCGGCATCCATTTCTGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041961_3

>merge|NZ_CP041961|3|2352439-2352533|CRISPRCasFinder
GGGTCGGCATCCATTTCTGCCAGCAGATCTGCGGTGATCAGGTCCACTGCGGTGGGTGCGGCTCCGAACGCCGGGTCGGCATCCATTTCGGCCAG

>NZ_CP041961|3|3|2352439-2352533|CRISPRCasFinder
GGGTCGGCATCCATTTCTGCCAG	CAGATCTGCGGTGATCAGGTCCACTGCGGTGGGTGCGGCTCCGAACGCC
GGGTCGGCATCCATTTCGGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041961.1\|WP_016851346.1\|2336636_2339009_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP041961.1\|WP_078585903.1\|2362951_2363260_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_078538117.1\|2356473_2356713_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_011051221.1\|2349027_2351034_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP041961.1\|WP_016851342.1\|2345643_2346177_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_003489692.1\|2351429_2351738_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379202
NZ_CP041961.1\|WP_078585905.1\|2356935_2359977_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP041961.1\|WP_078585902.1\|2362632_2363010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016851343.1\|2342942_2345120_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP041961.1\|WP_078585695.1\|2339780_2340074_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_005914940.1\|2354876_2355617_-\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP041961.1\|WP_016850743.1\|2360318_2360906_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016851341.1\|2346496_2348788_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP041961.1\|WP_076056962.1\|2360983_2361448_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_002806565.1\|2351067_2351433_-\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP041961.1\|WP_078585694.1\|2340081_2342817_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP041961.1\|WP_005931860.1\|2353895_2354870_-\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP041961.1\|WP_124944752.1\|2361510_2362413_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016851345.1\|2339022_2339784_-\|transporter	unknown	unknown	gnl\|CDD\|379259
NZ_CP041961.1\|WP_003489696.1\|2353111_2353894_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113

Protein	Function_ID	Function_description	E-value
NZ_CP041961.1\|WP_016851346.1\|2336636_2339009_-\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	6.26175e-102
NZ_CP041961.1\|WP_003489692.1\|2351429_2351738_-\|STAS-domain-containing-protein	gnl\|CDD\|379202	pfam13466, STAS_2, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	3.92342e-10
NZ_CP041961.1\|WP_011051221.1\|2349027_2351034_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP041961.1\|WP_005931860.1\|2353895_2354870_-\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	9.23429e-147
NZ_CP041961.1\|WP_078585905.1\|2356935_2359977_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP041961.1\|WP_016851343.1\|2342942_2345120_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	6.2561e-111
NZ_CP041961.1\|WP_005914940.1\|2354876_2355617_-\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	6.78947e-148
NZ_CP041961.1\|WP_016851341.1\|2346496_2348788_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.23731e-108
NZ_CP041961.1\|WP_002806565.1\|2351067_2351433_-\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.03477e-67
NZ_CP041961.1\|WP_078585694.1\|2340081_2342817_-\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	7.28008e-114
NZ_CP041961.1\|WP_016851345.1\|2339022_2339784_-\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	1.49555e-18
NZ_CP041961.1\|WP_003489696.1\|2353111_2353894_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.78125e-60

>NZ_CP041961.1|WP_003489692.1|2351429_2351738_-|STAS-domain-containing-protein
MSTVTLGEDLGIETSADLKQKLAGFLTQDGDLVLDAGEVRRIHTASVQLLCAFVQSRRQAGLHTEFDGCNDTFRDAARLLGVTDALGLPASNDNLKSVENAA
>NZ_CP041961.1|WP_002806565.1|2351067_2351433_-|response-regulator
MSARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGISLIRELRQLPDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVLG
>NZ_CP041961.1|WP_011051221.1|2349027_2351034_-|chemotaxis-protein-CheA
MSMDLQRFHATFFEESREGLDAMEAGLLSLEEGNRDPEIINSVFRAAHSIKGGAATFGFDAVAGLTHVLETLLDELRSNKRQLEPNAVDAMLGSVDVLRALLREAEHGTPADPAAVKAVHTRLNAVLAGEAPAAAAVAKPKEEEPEAWHIGFTPAPSLFMSGNDPLRIIRELEHLGPLQIAARLERMPGFENIDPLEAYLAWDLGLIGKIPRSKIEDTFAWVVDDCELDIRPMAVPGPPPSLAVDAPGAAPVAAVAAAPSAVAEPAAAATPAKAAAAEAESSIRVSVDKVDALINLVGELVITQAMLKQVSTGLDPAHAEQLFAGLDLLERNTRDLQEAVIGVRMLPVDAVFRRFPRLVRDLSSRLGKQVRLRTIGESTELDKGLIEKIADPLVHLVRNSIDHGLEMPDARRASGKDETGTITLAASHQGGHIVIEVSDDGRGLNRAKILEKAAERGIAVPDNPTDAQVWDLIFAPGFSTADAVTDLSGRGVGMDVVRRNIQGLGGEVQLESNAGSGTRVLIRLPLTLAILDGMTVSVAGETLILPLSYVLEALQPAPEDVRAMAGDGRVLRVRGEYLPILSLTNYYGFGGQQSSKESLVVVVEGDGQKIALEVDELLGQQQVVVKNIENNYRRIPGVSGATILGDGRVSLIVDIGGLVRSLKVPQAA
>NZ_CP041961.1|WP_016851341.1|2346496_2348788_-|methyl-accepting-chemotaxis-protein
MNWFRNLAVARKLAVAFSFTALITLSLGGFALARMQSSAHLLREIGTVWAPAVQQLSEMRALLGEFRTYELAQLAHADDPKAVQNYFERMDKARADVATAQDAYAKTTTAGRETELYDEVKLKLSDYYKANAALSAAVRAGDLVTANRVSDEQSRPARRDLFAKLVELTKFNVAHMDSEIAQAEATYRRSVHVMLVAMALFVLLAAFSGWFIARSIAGPLGRATRVASAIAQGKLDNAIHVDSRDEAGQLLHSMEGMQRQLQAVLAAQSEMAKRHDAGQISYRMEHDAFPGDYGTMVRDTNSLVGSHIAVKMKLAQIMSHYAIGDFSQDMDRLPGEKAVLSSTMDTVKANLSAMNGEIKLLAQAAANGDFSVRGDTQRFQYDFQAMVESLNQLMATADANLGSLSKLLQAIAAGDLTERMQGQFNGVFAQMRDDANATTAQLADIVGRIQHATLSINTAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAATVASQGGSVVAQVVTTMSGIEVSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVSKVAEGSVLVDRAGKTMADIVASVQRVTDIMGEISAASQEQSAGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLSDAVSIFKVQQVAAVAPAAKRPAPLRLAAAKPGVAKPTTTKRAPAPAGVAAKATATAKQRPVAATAGNSESDWQEF
>NZ_CP041961.1|WP_016851342.1|2345643_2346177_-|hypothetical-protein
MHTANSNRSARTVLGCVFTVALLAAGVSLPPSFAAPAAPVSVLLDNVPVTALQSLAVDLAQLRDDQRAQLAARHDAARIDAYDERLGNLHQRIARHAGYFQATAPQGEQARKFALVQQQLGKYLAQHRQANRALHEGDLQYAQALSLGHSGDTRHVLWTELQSLQQSVASANVAQRN
>NZ_CP041961.1|WP_016851343.1|2342942_2345120_-|methyl-accepting-chemotaxis-protein
MTLKTTVAKTLANVPLKRKFFVQTALVALGIIALAVIAARMQYVDLTDTRRDGLKSQIEMAIAVVNGYAERAEKGEIDVETAKKSALHTLSTMRARGGVDYIYVTDQTPTMLMHPTRPDLVGKPLSDVLSPDGKRVFPAFVTAAQAGGGYVDYTWAKPGQKDPVQKTSYAALYKPWGWVIGTGVYLDDTQSQALVFTGIVAIAGGALVLINLLVGWMIGNSILEPVSRALAAIKGVARGDLSVRTAEHGTDEIGQMLKATDEMVHTLERFSAQTKVMVHMHAGDDVTHRMPTDFPGVYGELATGINTMIFEHLDAIVDAIGILNEYAQGDLSRNAARLPGTRAVLHEAMDAAKASLLAINTEIKRLAQAAANGDFSQRGDATRFKHDSARMINDLNAMMEVSDRNLGKLSELLASLAEGDLTARLDGQYHGVFARMRDDANATATQLAGIVGRIQQAASSITGSASEIAAGNNDLSQRTEQQAASLEETAASMEELTSTVKQNAESARQANQLAIGAASVASQGGQVVSQVVDTMSGIQTSSRKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVGKVSEGSLLVDQAGKTMAEIVSSVQRVTDIMSEISAASQEQSAGIEQVNLTVTQMDESTQQNAALVEEATAAANAMQQQAQQLDEAVSSFRIVAAASNQFGHAGARAPTRVALAAH
>NZ_CP041961.1|WP_078585694.1|2340081_2342817_-|HAMP-domain-containing-protein
MFGTAVIASLCFGLTAAITYWQSSRALSASAQATMQNAARYQAEQIGSDLGQALTTGQSLATTLLVQRANGGISRDSAAAVVHDQLLDHPEWVGMGTLWEPQAFDGKDSAFANATGHDATGRFMTYWGRSDQTLVREPLTDYDTPGLGDWNLKPRALLRQTVAEPYDYKIGGKTVLMTTLSTPILQDGKYLGAVTVDVALAALQQRLGALRPMQDGYVELLSPAGVVLASHDTTRIGKQVTDARHRTMLEAIKAGKDALDFTPDADGAVSAYVPLQIGKAQERFALGVVVPYATIMQQAHHLLWTILAVGLGSALVLSVALFALLRRQVVRPLEAAAHVADAIASGKLDNQITVQRQDEVGRLMGAMQRMQSDLRERIERDAQVANENLRIRTALEHSEMEVLLADEQHNAVFITQALHTSFKQGEPAFHAKGQTGFSADAVVGKPMDYVFGNDSEGTARTQRLRQLQSTSTERYRFGPVTLDLTMTPLYAPDGRRSGSMLLWRNISAEVSTQQEVAELVQSALMGDFGQRLALEDKHGFYLEFGRQLNGLLETTSLSLERISSLLSALAEGDLTVRMDGDFQGVFARMRDDANATVAQLTGIVSGIQTSATQISAAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAEHARQANQLAIGAADVASHGGSVVAQVVTTMSGIETSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVEQGASLVHQAGTTMSEIVASVQRVTDIMGEISAASQEQSSGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLTEAVAVFRLNHAVKPVLAASTGKPAMRAVGTTKPAPARGKRVATPLRQSVGKSSGTAVNDSQWQDF
>NZ_CP041961.1|WP_078585695.1|2339780_2340074_-|hypothetical-protein
MRSGLQAYTSVTVRTQRYLHSTAASGMARLGALRMPCPSARPTRIKNHAALPLGWMTSIACAPPQQPVQQRMRAVAASTATHASGYSFPQVATQGMP
>NZ_CP041961.1|WP_016851345.1|2339022_2339784_-|transporter
MKPSVIASCFVLLGVMGQARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWERDDAVDAYSTPTLLRYGLGQTWELRLETDGWQRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKTSLAWLLHVDLPSGAQALRGHGARPSFRLVAEWELSDSMSAGMMPGVIWDDDGQGNRYTAGIFGAVLGKAWNDRVRSFVEVALPQIANSDDGGTVALLDIGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFRF
>NZ_CP041961.1|WP_016851346.1|2336636_2339009_-|chemotaxis-protein
MKIMHMLGVLVLVAALALLALGGVGYNGQRGLLDAIAAQVISSDALRNHMQADMMHDALRGDVTAALLAASTKDDKAVAAARTALGEHAGEFRESLAANRKLPLAPALRSELDAVTPALQAYIASADHVVKAAETHADSAAAYADFNDKFSQLETRMGAISERILALNEASRRQAEQYSHRVMWQQGSAVVLALVCLALAAGWILRSVFGLLGGEPQLAMAAAQHIAEGRLDQPIPVAAKHSRSLMAALARMQRDLRERLERERSIAAENLRIRTALDNASTGMYIADPDLTIIYTNSALQNLLHTYADDVQACAPAFHRTANLVGQPVSLLEVGNAQDAEIYQRLDRQGAAQREVQYRSTCIAQNVSAIRDETGAHLGFVCEWRDRTAEARVEIDVADVVRSAAAGDLSKRIDSTGKQGFFLQLAQQLNALLDANAVSIAEVSRLLSALADGDLSARMQGDFHGVFATMRNDANTTAEQLALVIGRIQQAAGSIHTASSEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAAGVASQGGAVVAQVVTTMSGIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVAEGSQLVHQAGTTMADIVASVQRVTDIMGEIAAASQEQSSGIEQVNLTITQMDEATQQNAALVEEATAAARTMEDQASQLAHAVSRFTLADAPPSQAATPAAKKAAVVAVARASKTSTRAPGARKPAVNAPAATAGNDNQWQDF
>NZ_CP041961.1|WP_003489696.1|2353111_2353894_-|ParA-family-protein
MRIWAIANQKGGVGKTTTTLALGRGLAALGHRVLLIDLDPHSSLTRAFGVAIDPPPRGVLDLFGTPPSDLASLAHESSIPGLSYVCAQAALATLERRSANQPGLGLALQNAMTRHAGQHDYILLDCPPTLGLLMINALAACDRVVVPTQAEPLALHGLASMVRTADMVQRSRRRELPVSILPTLFDRRTRAGTETLKEMQATYGPVVWEDAVPVDTRICNAAALTVPAVGGDYQGRGLSAYRRALEWVLADDAMRMEQAA
>NZ_CP041961.1|WP_005931860.1|2353895_2354870_-|flagellar-motor-protein-MotD
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQSLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLASVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVIQGVQ
>NZ_CP041961.1|WP_005914940.1|2354876_2355617_-|flagellar-motor-protein
MDRLSVIGLVLAIVAIVGGSVLKGAGISSLWSPAAFVIVIVGTVAAILLHTSPAVFRRAFKILRWVIQPPASDRPQLVARIVEWSNIARRQGLLGLEDQLPRQDDAFLRKGLQMLVDGVEPEAMRNMLEIEVDNQERQDLAAAKVFEGMGIYAPTLGIIGAVLGLMAVMKNLADPAMLGHGIAAAFTATIYGIASANLLFLPVAAKLKSVIHCSTNEREMAIEGLIAIAQGENPRNIESKLAGYLH
>NZ_CP041961.1|WP_078538117.1|2356473_2356713_+|hypothetical-protein
MSSVANNGECASASVNRLRPVAGEGVLRAAIELLLPPACTVPRASVASPTARGDACKPLACCAAECAGAWAVLLSFPLH
>NZ_CP041961.1|WP_078585905.1|2356935_2359977_+|TonB-dependent-receptor
MFASAASTSAAAQQADGTPAPTDQAAVQATDLDAVTVTGYRYAIEKSLEQKRNANAVVDVITAEDVGKFPDKNVADALQRVPGVVISRDGGEGKNVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSAELYKTPEARIDEGGIGGTVILQTRRPLELEPHSGFVSAEGTWSDTSKKTDGQFSGSYSWHDKDNRFGVFVGYTQQKRTARTLDASTESWQWYGRDEGGPAVDVNGNRSDFNANWWGGTGFWNQDGNYYTGFMMPTAVSLEAKREERERKGGQLTLQFKPTDDLTLTANYFRFDLSQDSQTNTIKIPEWNIARYFGDGNWRGGRLLDRLRFDPSGTIVTGAAYSLRPGKTYYCSEAQAAAAGLPPGGWGSDDCTVPTPQITGSYNIEKSQSQTVDLGGEWRGEQVDVAFKAGRTWAKGGPELQFSLPIKPRLQNADGSWTNGNFVSAWDLTGTPSMTFSPELMQNLRDGILQVDLGSTGSSWTRNTNQQQYAQIDTTWHFDGEVVDSLQFGLKRRDGGIHRNTGNNYWVCPGTDPSDYDNRYWNGRCNAIATQFSPGLLFAQDNLAGGVNASAFPAINFPGYIGYLNQTYGAMQTRSENNFVYNVDEEIYSTYLQLNFHTERLRGNVGVRVARTGQRADSTDKVTAYNDYFFDGADGNPLACQQGAATPGGAPADTYCGTEGYWRLSDSVQRTESFVVSGLDRNYTDVLPSFNLAYDLTENLLLRAAASKVIARPSYNDIAAPGSLEFYSPEYVADRRLTGGASEQGWYGSGSNKNLEPYKANQFDLGLEWYFHPGSVAGVGLFRKNVENFAVDVISDVNMMVDGQPVTVQNYSTQAGGQDAVSQGVELYAQHTLPFGLGVQFNYTYNDASKAAVRLEDGTEAGKTAMPGSAKNQTNLTVFYETDSLLLRASYNRRGELVQGLVNGLNVFEEPYYQIDVNAAYNITPALSLTASVLNLTKQESRSHLGEDTRARFYTGGYAGRLAYLGLTYKF
>NZ_CP041961.1|WP_016850743.1|2360318_2360906_+|hypothetical-protein
MNPATIITGALLSQVLLAVIMFVAASILHAHLPRHGRLRGEPVRAQYTWLILILLLVSVTTLVFTHSLSSFWVGLFQNTSFSGIPDKHATLLVFLINIGITTLLVATTGGSAESPFQPIFFLIPTLALLLFESSFRVVIYAAMVSVSFTFLLAMPDFGSEGSRGSRRAYGFVSIASLALAVLIGLLTRICPVGVC
>NZ_CP041961.1|WP_076056962.1|2360983_2361448_+|hypothetical-protein
MEHNLERLKAHILPLSQSDRFDVARTEWDLVGVEITEDFDRCPCGQEIKEHCYITNRITGESTYVGNVCINRFLGISTGTLFDGLKRIANDPHANANLDVIRHGLKLGFIYESEYDFLVSTRLKRNLSPRQLEWKRKINRRITQQIVVRRRTRT
>NZ_CP041961.1|WP_124944752.1|2361510_2362413_+|hypothetical-protein
MPIGICRLCQRESELQLSHVVPAFVFRWLRESSGNSHMRSTEAPNRRVQDGPQRHWLCLECEGRLGRSEAAFATGLFHPYLARSGERFRYGPWLLRFCVSVSWRNLLIQLDHLEEHNFTASERNWVESAERTWRQYLLEEIPHPSEYRQFILPLDRIESNRTDLPPNINRYLMRAIDIDLCHGERTLFTYSKIGRFVIIGFINEPNQARWVGGRVNANEGTVEPRHYTLPAPFGTYLMGKATRVRESMQGISPRQAERIERAFRANAGRIVGTDFFEAVKADVEMFGSEAFSSRGPESER
>NZ_CP041961.1|WP_078585902.1|2362632_2363010_-|hypothetical-protein
MHGAVDMATPSWNNTRTAANGDGMSGGSKPLVAGGRIPLAGVVLAALPTQALRRLVPAGCRHKKPTGLTEVGTATRGVSTLLGTRLQVHGLACQHTLAGLGRLCAPLAQFHTGHASRAPSPDKCT
>NZ_CP041961.1|WP_078585903.1|2362951_2363260_+|hypothetical-protein
MAAVLVLFQEGVAMSTAPCIPASVPVDLLPASAYRLPWDMGGVLRRLDASTAIEQARDHTAHPLSRQLGVLPHTSRRLSARRAVPLQQYVAATITRHHPEAL

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Crispr_ID: NZ_CP041961_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041961_4

5082181-5082257

Orphan

Consensus_repeat	Method
TCGGTCGCGGCCAGGGCCGCTCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041961_4

>merge|NZ_CP041961|4|5082181-5082257|CRISPRCasFinder
TCGGTCGCGGCCAGGGCCGCTCCTACAGAAGCCGATGTGGCGTCGGACGACTCGCTCGCGGCCAGGGCCGCTCCTAC

>NZ_CP041961|4|4|5082181-5082257|CRISPRCasFinder
TCGGTCGCGGCCAGGGCCGCTCCTAC	AGAAGCCGATGTGGCGTCGGACGAC
TCGCTCGCGGCCAGGGCCGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041961.1\|WP_016849227.1\|5062828_5064406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275057
NZ_CP041961.1\|WP_003482333.1\|5071916_5072249_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016849225.1\|5065256_5068904_-\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264
NZ_CP041961.1\|WP_005912356.1\|5074521_5074620_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_029829714.1\|5074722_5075889_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239118
NZ_CP041961.1\|WP_005912377.1\|5088641_5089187_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223
NZ_CP041961.1\|WP_004429260.1\|5062524_5062704_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016848858.1\|5087086_5087881_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NZ_CP041961.1\|WP_029829717.1\|5082511_5085916_-\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|273633
NZ_CP041961.1\|WP_016849224.1\|5068987_5070787_-\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NZ_CP041961.1\|WP_026006798.1\|5089835_5090126_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225655
NZ_CP041961.1\|WP_050595570.1\|5076678_5078736_-\|exodeoxyribonuclease-V-subunit-alpha	unknown	unknown	gnl\|CDD\|273631
NZ_CP041961.1\|WP_029829718.1\|5090136_5091192_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP041961.1\|WP_033483043.1\|5061595_5062492_-\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP041961.1\|WP_144363098.1\|5072447_5074373_+\|M61-family-metallopeptidase	unknown	unknown	gnl\|CDD\|226483
NZ_CP041961.1\|WP_016850440.1\|5091867_5092419_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP041961.1\|WP_033483042.1\|5092572_5092953_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041961.1\|WP_016848857.1\|5089183_5089846_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225410
NZ_CP041961.1\|WP_016850439.1\|5091329_5091839_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP041961.1\|WP_003482308.1\|5087880_5088630_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838

Protein	Function_ID	Function_description	E-value
NZ_CP041961.1\|WP_016849227.1\|5062828_5064406_+\|hypothetical-protein	gnl\|CDD\|275057	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A. Members of this protein family are found, so far, exclusively in the genus Acinetobacter. Members average just over 600 amino acids in length, including a 22-amino acid C-terminal putative protein sorting recognition sequence, GlyGly-CTERM (TIGR03501). The GlyGly-CTERM signal always co-occurs with a subfamily of the rhomboid family intramembrane serine proteases called rhombosortase (TIGR03902). Members occur paired with a second rhombosortase target, with which it also shares an N-terminal motif CSLREA. This protein is designated Acinetobacter rhombotarget A (rbtA).	3.27046e-05
NZ_CP041961.1\|WP_016849225.1\|5065256_5068904_-\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP041961.1\|WP_029829714.1\|5074722_5075889_-\|nucleoside-hydrolase	gnl\|CDD\|239118	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	2.33409e-49
NZ_CP041961.1\|WP_005912377.1\|5088641_5089187_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	7.61801e-63
NZ_CP041961.1\|WP_016848858.1\|5087086_5087881_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	9.41597e-122
NZ_CP041961.1\|WP_029829717.1\|5082511_5085916_-\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|273633	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit. This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041961.1\|WP_016849224.1\|5068987_5070787_-\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
NZ_CP041961.1\|WP_026006798.1\|5089835_5090126_+\|STAS-domain-containing-protein	gnl\|CDD\|225655	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only].	2.74874e-12
NZ_CP041961.1\|WP_050595570.1\|5076678_5078736_-\|exodeoxyribonuclease-V-subunit-alpha	gnl\|CDD\|273631	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041961.1\|WP_029829718.1\|5090136_5091192_+\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	4.51369e-101
NZ_CP041961.1\|WP_033483043.1\|5061595_5062492_-\|pseudouridylate-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	3.09301e-127
NZ_CP041961.1\|WP_144363098.1\|5072447_5074373_+\|M61-family-metallopeptidase	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	6.64742e-65
NZ_CP041961.1\|WP_016850440.1\|5091867_5092419_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	5.66269e-83
NZ_CP041961.1\|WP_016848857.1\|5089183_5089846_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|225410	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism].	2.12519e-50
NZ_CP041961.1\|WP_016850439.1\|5091329_5091839_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	2.08881e-11
NZ_CP041961.1\|WP_003482308.1\|5087880_5088630_+\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.82887e-81

>NZ_CP041961.1|WP_050595570.1|5076678_5078736_-|exodeoxyribonuclease-V-subunit-alpha
MNLLADLQAKSHLRTLDHAFAQSLRRLRPDTPDTVLLAAALSSLAVANGHAGLDPRRPRLLVDADVAWPAADAWMAQLQASPWIAQPDDPLAAAVSDAPLVLEHGLLYLRRYREYEARLAAGLTRIASHTLPATESAALAAVFAALFPSATTGQDRQAQAAALALRRALLLITGGPGTGKTTTIARLLLLRLAQAHAAGQPPPRIALAAPTGRAAERMAESLRIALARAIEQGLPAEHQGASPLPPAGEGARRAGEGTAPTDFSWHSALPTGASTLHRLLGVIPDSPHFRHDADNPLPFDLIVVDEASMVDLPLMCKLVQAVADGTQLILLGDADQLPSVEAGDVLAAILQAAGPADTLPPDDARALQPLLGSAPVTAPAASTPVGHLAGHRVHLLRGYRQAADFALAPLADAVRIGDADTALSLLRSGTLPGVHFHEDGDDPLSLGRDALLAHWHALTATNDPADALRQAGRLRLLTAVRAGPQGARGLNARIEQLLAESGSGARRLGAASPWFHGRLLLITENSYRHGLFNGDVGICLRSEASPASVRDPQAALVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRSALARHAARISGLAWRLGAEQMQPTADAASPLRATTPTALGNPIQGSLF
>NZ_CP041961.1|WP_029829714.1|5074722_5075889_-|nucleoside-hydrolase
MLSELGVADAPVLTPTEAAVLRELRLHRPQLPLDTLLFTDPNRDPDDVVTYTIAKQLQVEGFLRLTDVVVTLGDADMRSQRAQLAKGVFDRLALPDVRVARGQDYPMTSTQAREHSKFLAEGDALRAAPDAVHTDGVRAMRERLATSPHKLGMVVIAGMTDASALLAEAGDLVREKVASITIMGGIDPARDADGFVQPDARPYNNATDIHAARALYRRAQQLGIPLRILTKEAAYRAAVPPAFYEGIARNGHPVGEYLRDVQKNALKGLWEGIQANLIRDLDTAWFFRTFVAAQPQDPVAAGQQGSMSFDAIWPQVTKLNLYDPLTLLAALPGTARLLFQPTPMHREGASPVEHVGHAEVVRPEKARLLLSALAKAALAHDDEEQHAR
>NZ_CP041961.1|WP_005912356.1|5074521_5074620_+|hypothetical-protein
MSKGMDQKKNQKKEPTKTLKEKRAAKQEKRGK
>NZ_CP041961.1|WP_144363098.1|5072447_5074373_+|M61-family-metallopeptidase
MRIHSKHIPHFRLARASVLTVALALFAGQGFAQTGNGPTYVAPTPTVAPPVDHAFAGVMRVDVDATDVARRIFTVHQQIPVDGSGAVTLLYPRWEAASHGPSLTVTDLAGLEVSAAGRRLPWRRDGYEPHAFHVEVPAGTQQIEVRFQMLAGGELLTRDIVSVPWQRLLLYPAGWYARNIPVAAMVTLPGGLRPFSALDVERAGGTHYAFKTTSLETLLDAPVLAGRYTAQLPLTGAVSLDIVAQRPADLQVPPARVAELRSLLAQLGAVFGPPPFARYAILARLSDEGSAGGAEHRASSENGLASSHFQDWLGQILSRDLIAHEIVHAWNGFYRTPADLWAPTPNVPVSGRLLWMYEGQTEFWGRVLATRAGQFTPDEVRDRLALEAAEIAARPGRAWRSLSDDVHYPAFMLRQPVAWRDWQRRRDYYSEGVMLWLAVDAELRTRSGGKRSIDDFAQRFFAGATPSAPTRTYTFEDICATLHAVAPADWAGFLRGWIDAHDELDTTRGLTQHGWSLVYTDTPTAAFGASEEEAGVADLTYSIRLTVRADGMVRTVAWNGPAFAAGLRPGTRVSTVNGAPFTQDAVRDAVRGSARRPIVLGIAQDEQRADVQIQYSGPLRYPRLERLANRSDTLARLLAPR
>NZ_CP041961.1|WP_003482333.1|5071916_5072249_+|hypothetical-protein
MMKWMGTALAAALLMSGCAKVEGEKFVGHWVNLQSQDETMDIERNGETFMVRSTTPKFFSRQPKTESYPAVYKDGALQVTNDGETVNFAIDESNGHLNTGGEQYERVPAK
>NZ_CP041961.1|WP_016849224.1|5068987_5070787_-|allophanate-hydrolase
MTHTAFWTLADWQSAYAQGAAPAELLSCLIAGLPQGDVAWISRLSLDGLQSRLAGLAQQLMQVGGDLSKLPLYGVPFAAKDNIDVAGLPTTCACPEFAYQPTHNAAVIDRLEAAGAVVIGKTNLDQFATGLVGTRSPYGPVPNAFKAEYISGGSSSGSASVVARGLVPFALGTDTAGSGRVPAGHNNLVGLKPTRGMVSNRGLVPACRTLDCITVLALSVDDADAALRAMGGFDASDAYSRQAPVRPASWPAKPVLGIPASPDWFGDIQAERVYTDALRRLETIGVELELIDFAPLFEVAALLYEGPWVGERYAAIEELMNAKPEVVHPVVRDIVQKATNFSAVDAYKAEYRRMALARKAEALMQGLDGLLVPTAPSIYTIEQLLAEPVTMNARMGVYTNFVNLLDFSAIALPAGMRADGLPAGITLIAPAWHEARLIAFGRRWQAAAPWKRGASQQELPPVDVPAAPSLDGHVIVAVVGAHLSGMPLNGQLTERGATLLESTHTSAAYRLYALPGTVPPKPGMLRTGEGAPIAVELWAMPVERYGSFVALIPSPLGIGSLDLIDGRTVQGFICESWATRGAEDITALGGWRAYVARKN
>NZ_CP041961.1|WP_016849225.1|5065256_5068904_-|urea-carboxylase
MFKKILIANRGEIAVRIARTLKKMGVTSVAVYSDADHDSLHVSVADEAVALNSGGSSSAAETYLRGDRILEIARKTGAGAVIPGYGFLSENTTFAEQCAEAGVVFVGPTPEQVRRFGLKHTARAIAEAAGVPLTPGTGLLQSLDDAKVAAQRIGYPVMLKSTAGGGGIGLSRCDSAAELATAYDSVQRLGQNFFKDSGIFIERFVADARHVEVQIFGDGKGRVVALGERDCSLQRRHQKVVEETPAPHLPDATRAALLDAAVKLGEAVNYVSAGTVEFIYDAARDAVYFLEVNTRLQVEHPITEAVTGLDLVEWMVRIAAGEPPSFDDLPTPRGTAIEVRVYAENPVRGFQPAPGILTDVQFPEDVRVDTWVQTGTEVSANYDPLIAKVIAYGAHREEARQKLLMALELTRLHGSATNLDYLRSILQSREFSAGTVSTLLLDRYDYVSPVVEVLESGTYTTVQDYPGRTGYWDIGVPPSGPMDDYAFRLANRIVGNHESAAGLECTLQGPTLKFHGDAVIALTGAPALATLDDGEPLPWWKPIAVRASQVLRIAKASSGCRSYIAIRRGIDVPEYLGSKSTFVLGQFGGHAGRTLRVGDVLPISRPEPAVCTTPAPACVPATPPHELVPSYGKHWDIGVLYGPHGAPDFFSEDSIANFFTTDYQVHYNSNRLGVRLVGPKPKWTRSDGGEAGLHPSNVHDCVYAIGSINFTGDTPVILTCDGPSLGGFVCPATIVKAELWKVGQVKPGDTIRFRRMGFDEALALEQAQDEAIRLLRPLPDLSARDLPAAPATVSECVLAELPAEGQRPAVAYRQAGDKYILLEYGPNVLDLRLRLRVHLLMEALKAAKLDGVHELSPGVRSVQIHYDSRVIAQSVLVERLIALETQLPGVEGLQVPSRIVHLPMAFEDSATLGAVTRYIETVKADAPWLPNNVDFIQRINGLSRREDVRTTVFEASYMVMGLGDVYLGAPCAVPLDPRHRLLTSKYNPARTFTAEGTVGIGGVYMCIYGMDSPGGYQLVGRTVPIWNKFLRNRQFGAEPWLLRFFDRVRFYPVTEVELDQFRADFRAGRTHIKVEDAVFDLAEHERLLAQDANSIEAFRERQQTAYATEVALWQNDPKVEAVEDAEEAVMQAVDGSAVVADMWGNVWKVLVDVGQEVQIGEPLVILEAMKMEFQVAASQAGTIAALHCKAGKPVAAGDALVVIRPHPVAATVPYA
>NZ_CP041961.1|WP_016849227.1|5062828_5064406_+|hypothetical-protein
MRSTLHATVVTAGLLALITTSAAIAAVPSVAQCTTPQPWAHSNAGVVVGNGTAASCTASALATAVAQGGYVTFNCGTRAASIAVNQTINISASTPTVIDGQGKITLDGRQAARIFQVQNGNALSVRNLKLQNGSSVQPPSNTQYAPGTWGGGAIKVSYRGKLEVINSQFLSNRSSIGGGAIFAGSDTDVTIVKSSFSKNTSWLGGALYTQLSRLTIVNSEFVGNQAINAPAGFPDADQFGNSGAIDTDGASLAGYLNAAAGGATLSVCGTVVRNNSAANSGGGATLWAYAPDTIDVRYSTFANNIAYGGPAGGARISLGFGDTTHSGTTITTPGIINVEETSFISNRAEKSNAGALYMDCYGPSCNVSNSTFYGNYAKGVGAAIQHVGWQPSNGDQGKTTVRFNNVTFAENTPGSTLFGSGFDIRNSIFYSKTERTFCSDQSSTGNNLIEYSAAGGLFHSCLTAGLARATDPLLGAPAANGGPTLTQLPAANSPVRNLGSGCRTIDQRGVARDTAVCDVGAVEIK
>NZ_CP041961.1|WP_004429260.1|5062524_5062704_+|hypothetical-protein
MVTRDAATHCMQRAIACSTAASVDRCSGQLPHARSDVRPRDGAASTRGVLELRLASRCV
>NZ_CP041961.1|WP_033483043.1|5061595_5062492_-|pseudouridylate-synthase
MPDAPRTHDGTPASRFQLPAGPWVSVFDALCACFPAIAAERWRNRFERGLVRDANDQALALSAPYRVGADIRYFREVADEPAIPYVETVVHADAQLVVACKPHFLPVAPAGAYVRETLLTRLVRRLDNPALVPLHRIDRETAGLVLFSANPATRGIYQALFRERRIRKHYLAVAAPLPELRFPYVHRSRLEPGEPFFRMREGVGEPNSETVIEVVARNADTWTYRLEPVTGRKHQLRVHMAALGTPILHDRFYPALEAQRPDDPGRPLQLFAHTLAFDDPITGEPRRFTATTEPTKSA
>NZ_CP041961.1|WP_029829717.1|5082511_5085916_-|exodeoxyribonuclease-V-subunit-gamma
MHATSAPDFRLYPSNALDTLAALLAQELRRPMPGQPLLQPEVVLIPQVAMRRWLQSTLAAEHGVAANLEFLTPGEFVARALERNLGAADDDLDMATTQWRLYAALQSDLGSDAALAPLAGYLSDGDALKPWALAGELGSVFEKYQAWRRDWLLRWEAGADPDDPQARLWRSIAAGRQYRARRIGQYLDRYARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYWGDLQTLRQRRREDGAVQLFAEQVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLDSGRRTLAAGGLGDSLLRRMQSDLFHRRGPAADARLPAVNLHDPSLQVHACHTRLRELQVLHDQLRALLDDARFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLALLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRNWLHAAGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADEDIDGVAPWPQLEGSALAALDTLLRLLRVLERHQAALADAMTPVEWRERLLGLLEALIPATPTAPRAQRALDRLRTLIDQFARDAVRAEYAGKVPAEVVRAHFAAVLGDSDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGSVREPSVLISELLASAAQYHAASNALDTLVVRHPLQPFAAAAFGALGDDGADPRRFSYRRQWRPAVDSLVGQRQPLAPWVAGALPAEEIALPASMSIDALRRLLTDPAGQFLRHRLGMRLPDPAGEDSDLEPLLAPTRGLDHYGLQQQVFEAALAGDTEGLYERLRARALLPSGPLGRRQLDERVAQLRPYADAFRQWRGESPAQSRRLQVQIGEIELHGRVPGWYASGVGRVQVGALSGRSAIRHGLEWLLLRAAGEHAPYVRFFEHDDGLGPHPIDAQPLSQTQAHTALAELLQLYRQGVQTPLAFAPYSSWKYHQAARGGDLDKAIKEAAGQWQSGFGWSESHSPELRLVTRGRDPFADAQRFAAFATTSHRVYALLEQGNTGAPLETERVIDSWRHWHGAREDAE
>NZ_CP041961.1|WP_016848858.1|5087086_5087881_+|ATP-binding-cassette-domain-containing-protein
MTASASPVVQLSGVRIDRGGRTILRDVSLEVPRGSITAVLGPSGSGKSTLLAALTGELRPAAGAVTLFGNPIPTGSRALLEMRRNVGVLLQGNGLLTDLSVAENVALPLRTHTRLPAAVLQRLVQMKLHAVGLLAAADAWPRELSGGMARRVALARALALDPPLMIYDEPLTGLDPIASGVIMSLIQRLNDSLGLTSIIVSHHVHETLPICEQAVVIANGGIVFAGTPAQLQDSTDPLVQQFLHGQPDGPIAFDAAPRRDRSAA
>NZ_CP041961.1|WP_003482308.1|5087880_5088630_+|ABC-transporter-permease
MAFADSIRAFGRAGLFSLTVLRGSLPTRDFIAELVREIYKVGARSLPIIAVGGAFVGLVLTLQGYRTLTTYGASDALSTLLGLSLYRELAPVLTALLFIGRAGSSIAAELGLMRATDQIKALELMAIDPVAKAVAPRFWAAVLTVPLLTGVFCSLAITGGYFEAVHVLGIDNGTFWSGLSNSVDFWDDFGVAMLKSAIFGGTAALVAAYVGFHAEPTIEGTSVATTRAVVNASLLVLMFNFVLSAMLFR
>NZ_CP041961.1|WP_005912377.1|5088641_5089187_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MAMRGPRLEFAVGAFLLLTLASLLVLAVASTNQRWGFGSSQYTLTARFSQIGQLRAQAPVKIGGVTIGKVADISLDPTKFDSIVTLSLDTKYKDLPADTSAGIFTSGLLGESYIGLQPGGDPDTLKPGDEIGFTQPAVDLLQLVGKYMFSGGGGGSNAPAAANGQAPAPAQTAPPSTEPHQ
>NZ_CP041961.1|WP_016848857.1|5089183_5089846_+|ABC-transporter-substrate-binding-protein
MKTTVLSAVLASTLLVCAPATVLAQPAAASALAQGAATKTVIDSSTRILSTLDQRRAEFRSNPAALRQFINGELNKAFDRDYSARLVLGVHGRGASDADVKLFADALADNLMQRYGTALLNFEGKPTFRAKSESALPGNRGVKVSTDLLRAGNDPTPVDYLMRNTGGQWKIFDVMIEGISYVQTFKTQFDGPLREKGIAKVAAELRSGNLQVGAAPANGN
>NZ_CP041961.1|WP_026006798.1|5089835_5090126_+|STAS-domain-containing-protein
MATNTVQRMGDTLVINGVLDRAAVTAAWPQAIAQLDGARALDLSGVQRLDSAGVAMLAELAARLRQAGSGEVVGEASGLDELRAAYRLSPTLDFQA
>NZ_CP041961.1|WP_029829718.1|5090136_5091192_+|VacJ-family-lipoprotein
MTQFRSLPLLASLLLGACASQAPKSAPPSGGTAIAPAADAPVRDDAGVTAQPAASGMAAPDALPASAAAPADPQAAAGADTAAAGAPTDAESDFDALYGPTTSQASANGAPAQPGAAPAYDPWERYNRGMHRFNMAVDRGVARPLATAYTKVVPSPARLGVTNFFDNLGTPLTMVNQLLQGHPVHAMQSLGRFVMNSTLGVAGLFDPASAAGIPRRSEDFGQTLGAWGWRNSRYFELPLFGPRTVRDTFGLAGDIPLSWIRQVDDSGTRFALQGLQLVDTRAQLMSLDSLRDQAPDEYALTRDAWMQRRNYQITRDLRSHREKNNELPEYLRDDKDNTVPGNAMPIPNWVR
>NZ_CP041961.1|WP_016850439.1|5091329_5091839_-|nuclear-transport-factor-2-family-protein
MSLSGAGEQAMTFKYFFSSSMLALSMVTSCSHVPGTASTPDTQAEQYIVDCSRDWAESVVTGNRSKRRIYFADDFIGTDTKGRRYDKSQVTRETGPAKQIISNTLDEINVRFFGDTAIAHGSETWTRKDGSTGRYVWTDIWIKRSGQWQIIAAQDAAVPVPTPPRNDGT
>NZ_CP041961.1|WP_016850440.1|5091867_5092419_-|glutathione-peroxidase
MSQTLYDIPVTRIDGQPTTLADYRGKVLLVVNVASKCGLTPQYEGLEALYRDKRALGLEVLAFPANDFNGQEPGSEAEIAQFCQLTYDVTFPMFAKIAVAGDQAHPLYGALTSTHPHTTGDGPMREKLAGYGIAPNPAPGVVWNFEKFLIGRDGKIIDRFAPDIPADDARLRAAIDAALATRS
>NZ_CP041961.1|WP_033483042.1|5092572_5092953_-|hypothetical-protein
MATRWIHAALCALLLTACSNSPATRQAAAANAPQPPHTVSADAAQCTAKGGQLRPVGRMQIPRCIVPYADAGKTCTDNSDCSGDCLATSIVPTGAAATGTCQRDSDRFGCRQTVVGGRGQAALCID

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041961_4	4.1\|5082207\|25\|NZ_CP041961\|CRISPRCasFinder	5082207-5082231	25	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	281138-281162	5	0.8
NZ_CP041961_1	1.5\|27428\|31\|NZ_CP041961\|CRISPRCasFinder	27428-27458	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	934481-934511	6	0.806
NZ_CP041961_1	1.7\|27539\|34\|NZ_CP041961\|CRISPRCasFinder	27539-27572	34	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614842-1614875	6	0.824
NZ_CP041961_1	1.5\|27428\|31\|NZ_CP041961\|CRISPRCasFinder	27428-27458	31	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	150331-150361	7	0.774
NZ_CP041961_1	1.5\|27428\|31\|NZ_CP041961\|CRISPRCasFinder	27428-27458	31	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	81610-81640	7	0.774
NZ_CP041961_1	1.7\|27539\|34\|NZ_CP041961\|CRISPRCasFinder	27539-27572	34	MH271303	Microbacterium phage MementoMori, complete genome	20739-20772	8	0.765
NZ_CP041961_1	1.7\|27539\|34\|NZ_CP041961\|CRISPRCasFinder	27539-27572	34	MN813682	Microbacterium phage Matzah, complete genome	21015-21048	8	0.765
NZ_CP041961_1	1.7\|27539\|34\|NZ_CP041961\|CRISPRCasFinder	27539-27572	34	MK937591	Microbacterium phage Cinna, complete genome	21039-21072	8	0.765
NZ_CP041961_1	1.8\|27596\|31\|NZ_CP041961\|CRISPRCasFinder	27596-27626	31	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	380719-380749	8	0.742
NZ_CP041961_1	1.7\|27539\|34\|NZ_CP041961\|CRISPRCasFinder	27539-27572	34	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	72444-72477	11	0.676
NZ_CP041961_1	1.7\|27539\|34\|NZ_CP041961\|CRISPRCasFinder	27539-27572	34	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	22147-22180	12	0.647
NZ_CP041961_1	1.7\|27539\|34\|NZ_CP041961\|CRISPRCasFinder	27539-27572	34	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	116465-116498	12	0.647

1. spacer 4.1|5082207|25|NZ_CP041961|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 5, identity: 0.8

agaagccgatgtggcgtcggacgac	CRISPR spacer
gttcgccgatgcggcgtcggacgac	Protospacer
.   *******.*************

2. spacer 1.5|27428|31|NZ_CP041961|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * **

3. spacer 1.7|27539|34|NZ_CP041961|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .*

4. spacer 1.5|27428|31|NZ_CP041961|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

5. spacer 1.5|27428|31|NZ_CP041961|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

6. spacer 1.7|27539|34|NZ_CP041961|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

7. spacer 1.7|27539|34|NZ_CP041961|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

8. spacer 1.7|27539|34|NZ_CP041961|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

9. spacer 1.8|27596|31|NZ_CP041961|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

10. spacer 1.7|27539|34|NZ_CP041961|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * ..

11. spacer 1.7|27539|34|NZ_CP041961|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

12. spacer 1.7|27539|34|NZ_CP041961|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1234895 : 1306803

Stenotrophomonas_phage(57.5%)

portal,capsid,integrase,head,plate,protease,tail,holin,terminase

attL 1228168:1228185|attR 1267577:1267594

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1228168:1228185	attL	NA	NA	NA	NA
WP_003490845.1\|1234895_1236977_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_124632115.1\|1237581_1237650_+	hypothetical protein	NA	NA	NA	NA
WP_011050660.1\|1237854_1238499_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_016849001.1\|1238767_1240066_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_029828204.1\|1240133_1241168_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_016850314.1\|1241381_1242128_+	CvpA family protein	NA	NA	NA	NA
WP_003483730.1\|1242158_1243625_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.1e-85	39.9
WP_033482896.1\|1243820_1244645_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_016850317.1\|1244788_1244998_+	hypothetical protein	NA	NA	NA	NA
WP_029828209.1\|1246616_1247036_+	hypothetical protein	NA	NA	NA	NA
WP_016849994.1\|1247221_1247965_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_011050667.1\|1248444_1248987_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_016849993.1\|1248967_1250104_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_033482898.1\|1250326_1251853_-	exopolyphosphatase	NA	NA	NA	NA
WP_003483747.1\|1252024_1254127_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_011050669.1\|1254239_1255583_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	6.5e-29	33.3
WP_003483753.1\|1255640_1256330_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	1.0e-33	35.7
WP_033482899.1\|1256512_1258159_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_005915911.1\|1258308_1258617_+	glutaredoxin 3	A0A2L0UZG6	Agrobacterium_phage	3.6e-07	43.2
WP_003483760.1\|1258613_1259009_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003483762.1\|1259234_1260242_+	isocitrate dehydrogenase	NA	NA	NA	NA
WP_016850996.1\|1260381_1261143_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_016850997.1\|1261839_1262457_+	hypothetical protein	NA	NA	NA	NA
WP_016850998.1\|1262473_1263430_-\|integrase	tyrosine-type recombinase/integrase	V9IQN0	Stenotrophomonas_phage	1.7e-92	55.3
WP_078585787.1\|1263654_1263876_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.6e-14	56.3
WP_016850999.1\|1263872_1264082_-	hypothetical protein	NA	NA	NA	NA
WP_016851000.1\|1264078_1264282_-	hypothetical protein	NA	NA	NA	NA
WP_016851001.1\|1264347_1264572_-	hypothetical protein	NA	NA	NA	NA
WP_016851002.1\|1264568_1264841_-	hypothetical protein	NA	NA	NA	NA
WP_014091203.1\|1264833_1265016_-	hypothetical protein	NA	NA	NA	NA
WP_016851003.1\|1265008_1265383_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	1.7e-19	48.8
WP_016849270.1\|1265512_1265785_-	hypothetical protein	NA	NA	NA	NA
WP_016849269.1\|1265784_1266072_-	hypothetical protein	NA	NA	NA	NA
WP_015472861.1\|1266068_1266287_-	hypothetical protein	NA	NA	NA	NA
WP_078585791.1\|1266607_1269280_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.7
1267577:1267594	attR	NA	NA	NA	NA
WP_016851008.1\|1269312_1269525_-	hypothetical protein	NA	NA	NA	NA
WP_016851009.1\|1269521_1269800_-	hypothetical protein	NA	NA	NA	NA
WP_008572766.1\|1269810_1270131_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	2.0e-24	58.7
WP_078537260.1\|1270133_1270382_-	hypothetical protein	NA	NA	NA	NA
WP_029828228.1\|1270467_1270899_+	transcriptional regulator	E5E3U2	Burkholderia_phage	1.4e-09	38.2
WP_016851031.1\|1271505_1272492_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	2.8e-93	55.7
WP_016851032.1\|1272488_1272890_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	3.5e-39	61.4
WP_029828231.1\|1272902_1275773_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	8.9e-193	47.1
WP_005922203.1\|1275802_1275916_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_029828232.1\|1275924_1276227_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	2.2e-25	67.4
WP_016850450.1\|1276272_1276782_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.1e-73	81.1
WP_029828235.1\|1276811_1277978_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	1.1e-133	63.2
WP_016850452.1\|1277989_1278349_-\|plate	phage baseplate protein	V9IQW0	Stenotrophomonas_phage	2.1e-35	62.7
WP_016850453.1\|1278345_1278909_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	8.2e-26	47.0
WP_016850454.1\|1279051_1279726_-	hypothetical protein	NA	NA	NA	NA
WP_016850455.1\|1279728_1280022_-	hypothetical protein	NA	NA	NA	NA
WP_016850456.1\|1280095_1281895_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	8.9e-82	37.6
WP_029828239.1\|1281907_1282450_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.1e-51	56.6
WP_016851159.1\|1282442_1283333_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	2.6e-82	53.0
WP_078585788.1\|1283428_1284967_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_016851160.1\|1285148_1285598_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	6.3e-37	56.5
WP_016851161.1\|1285585_1286005_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.1e-40	65.2
WP_016851162.1\|1286001_1286490_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	1.2e-28	52.6
WP_078585789.1\|1286489_1287131_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	2.7e-49	60.4
WP_005922189.1\|1287127_1287403_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
WP_005929454.1\|1287395_1287752_-	membrane protein	V9IQG9	Stenotrophomonas_phage	3.5e-22	56.1
WP_005917735.1\|1287756_1287966_-\|tail	tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_029828243.1\|1287965_1288433_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	4.6e-30	49.7
WP_016851153.1\|1288531_1289251_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	5.3e-70	63.8
WP_029828245.1\|1289254_1290268_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	9.3e-137	71.4
WP_029828246.1\|1290314_1291157_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	3.4e-68	53.5
WP_033482900.1\|1291278_1293063_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	7.3e-270	76.5
WP_016850658.1\|1293062_1294076_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	5.8e-139	71.9
WP_078585599.1\|1294101_1294347_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	7.0e-14	51.2
WP_029828252.1\|1294264_1294966_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	2.1e-103	75.5
WP_078585598.1\|1295138_1295555_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_026007262.1\|1296482_1297382_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_016851285.1\|1298523_1299645_-	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	1.9e-29	29.4
WP_016851284.1\|1300652_1300982_+	hypothetical protein	NA	NA	NA	NA
WP_016851283.1\|1301167_1301365_-	hypothetical protein	NA	NA	NA	NA
WP_016851282.1\|1303379_1304672_+	trigger factor	NA	NA	NA	NA
WP_002806026.1\|1304764_1305391_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.0e-56	57.4
WP_003483788.1\|1305516_1306803_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.3e-137	59.9

DBSCAN-SWA_2

3596032 : 3719386

115

Stenotrophomonas_phage(45.65%)

portal,capsid,transposase,integrase,head,plate,tRNA,tail,holin,terminase

attL 3637025:3637069|attR 3675061:3675105

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003482499.1\|3596032_3596752_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_003482501.1\|3596765_3598790_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	6.7e-94	33.0
WP_003482503.1\|3599063_3599588_-	hypothetical protein	NA	NA	NA	NA
WP_003482504.1\|3599601_3602046_-	penicillin-binding protein 1B	NA	NA	NA	NA
WP_029829319.1\|3602285_3604370_+	glycosyltransferase	NA	NA	NA	NA
WP_080573042.1\|3604378_3604711_-	hypothetical protein	NA	NA	NA	NA
WP_029829321.1\|3604726_3606169_-	hypothetical protein	NA	NA	NA	NA
WP_029829322.1\|3606430_3608617_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA
WP_078585717.1\|3608907_3608988_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA
WP_003482510.1\|3609071_3609971_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA
WP_005921461.1\|3609967_3610720_+	pyrroloquinoline-quinone synthase PqqC	NA	NA	NA	NA
WP_016849287.1\|3610716_3610995_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA
WP_003482516.1\|3610991_3612110_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA
WP_015463489.1\|3612172_3612685_+	hypothetical protein	NA	NA	NA	NA
WP_016849289.1\|3613121_3614636_+	PhoPQ-regulated protein	NA	NA	NA	NA
WP_016849290.1\|3614936_3615971_+	ROK family protein	NA	NA	NA	NA
WP_016849291.1\|3616071_3618708_+	TonB-dependent receptor	NA	NA	NA	NA
WP_029829327.1\|3618924_3623046_-	ATP-dependent RNA helicase HrpA	A0A1V0SDF7	Indivirus	2.0e-44	28.4
WP_003482535.1\|3623148_3623697_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	1.5e-16	32.4
WP_011052052.1\|3624177_3625974_+	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	1.5e-81	35.3
WP_005913671.1\|3626112_3626610_+	hypothetical protein	NA	NA	NA	NA
WP_016851165.1\|3626688_3627093_+	response regulator	NA	NA	NA	NA
WP_005913667.1\|3628358_3628469_+	hypothetical protein	NA	NA	NA	NA
WP_011052054.1\|3628560_3629271_-	RNA-binding protein S4	NA	NA	NA	NA
WP_016851168.1\|3629479_3629686_+	hypothetical protein	NA	NA	NA	NA
WP_144363121.1\|3629837_3630152_-	hypothetical protein	NA	NA	NA	NA
WP_144363120.1\|3630196_3632365_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_026007238.1\|3632730_3633357_-	amino acid transporter	NA	NA	NA	NA
WP_016851171.1\|3633458_3634361_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_003482555.1\|3634633_3634993_-	response regulator	NA	NA	NA	NA
WP_016851172.1\|3634989_3635997_-	PAS domain-containing protein	NA	NA	NA	NA
WP_016851173.1\|3636271_3636946_+	7-cyano-7-deazaguanine synthase QueC	A0A088F6S9	Vibrio_phage	4.1e-24	33.8
3637025:3637069	attL	NA	NA	NA	NA
WP_026007239.1\|3637223_3638423_-\|integrase	tyrosine-type recombinase/integrase	V9IQN0	Stenotrophomonas_phage	2.3e-118	53.5
WP_011038128.1\|3638422_3638683_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	2.2e-18	58.3
WP_016851176.1\|3638640_3638847_-	hypothetical protein	NA	NA	NA	NA
WP_016851177.1\|3638843_3639116_-	hypothetical protein	NA	NA	NA	NA
WP_016851178.1\|3639112_3639358_-	hypothetical protein	NA	NA	NA	NA
WP_026007240.1\|3639354_3639630_-	hypothetical protein	NA	NA	NA	NA
WP_016851181.1\|3639791_3640202_-	hypothetical protein	NA	NA	NA	NA
WP_016851182.1\|3640280_3640544_-	hypothetical protein	NA	NA	NA	NA
WP_080573080.1\|3640540_3640765_-	hypothetical protein	NA	NA	NA	NA
WP_016851184.1\|3640815_3641034_-	hypothetical protein	NA	NA	NA	NA
WP_080573081.1\|3641327_3643991_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.9
WP_011038118.1\|3644018_3644258_-	hypothetical protein	NA	NA	NA	NA
WP_011038117.1\|3644254_3644380_-	hypothetical protein	NA	NA	NA	NA
WP_080573074.1\|3644558_3644870_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	5.0e-25	57.0
WP_016851187.1\|3644876_3645131_-	DNA-binding protein	A0A1B0VRL1	Pseudomonas_phage	2.2e-07	46.7
WP_026007241.1\|3645197_3645626_+	helix-turn-helix transcriptional regulator	A4JWR8	Burkholderia_virus	1.4e-17	42.8
WP_080573075.1\|3645932_3646397_-	hypothetical protein	NA	NA	NA	NA
WP_080573076.1\|3646401_3646740_-	STAS-like domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	1.8e-07	32.0
WP_080573077.1\|3646705_3647653_-	hypothetical protein	NA	NA	NA	NA
WP_016851189.1\|3647939_3648926_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	4.0e-92	55.1
WP_016851190.1\|3648922_3649324_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	2.5e-37	59.1
WP_029996349.1\|3649336_3652207_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	5.2e-185	46.6
WP_005922203.1\|3652236_3652350_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_029996350.1\|3652358_3652661_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	1.4e-24	66.3
WP_016851197.1\|3652706_3653216_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	5.8e-71	78.1
WP_016851114.1\|3653246_3654413_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	2.6e-135	64.5
WP_016851115.1\|3654424_3654784_-\|plate	phage baseplate protein	V9IQW0	Stenotrophomonas_phage	1.6e-35	64.4
WP_016851116.1\|3654780_3655344_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	7.4e-27	48.6
WP_080573069.1\|3655422_3655698_-	hypothetical protein	NA	NA	NA	NA
WP_016851118.1\|3655651_3656857_-	hypothetical protein	A0A1S5NTG6	Burkholderia_phage	9.6e-32	46.2
WP_026007225.1\|3656860_3657409_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	7.9e-50	52.6
WP_144363119.1\|3657401_3658292_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	4.7e-84	53.7
WP_042761698.1\|3658698_3659172_-	hypothetical protein	NA	NA	NA	NA
WP_080573070.1\|3659183_3660008_-	hypothetical protein	NA	NA	NA	NA
WP_144363117.1\|3660180_3660636_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	1.7e-37	59.0
WP_016851122.1\|3660623_3661043_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	7.4e-40	64.4
WP_016851123.1\|3661039_3661528_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	5.8e-28	52.4
WP_080671044.1\|3661527_3662169_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	1.3e-48	60.9
WP_005922189.1\|3662165_3662441_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
WP_005917737.1\|3662433_3662790_-	membrane protein	V9IQG9	Stenotrophomonas_phage	5.9e-22	56.1
WP_005917735.1\|3662794_3663004_-\|tail	tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_029996352.1\|3663003_3663471_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	1.4e-31	50.3
WP_016851435.1\|3663569_3664289_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	1.0e-68	62.5
WP_029996353.1\|3664292_3665309_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	8.4e-138	71.1
WP_029996354.1\|3665355_3666198_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.4e-66	52.7
WP_033483117.1\|3666319_3668104_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	6.6e-271	76.8
WP_029996356.1\|3668103_3669126_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	3.1e-140	71.8
WP_053503138.1\|3669151_3669397_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	4.1e-14	51.2
WP_029996358.1\|3669314_3670010_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	1.1e-107	77.8
WP_016851201.1\|3670041_3670509_-	DUF4411 family protein	NA	NA	NA	NA
WP_088091923.1\|3670508_3671735_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_016850467.1\|3673741_3674227_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	1.1e-13	38.7
WP_011038085.1\|3674570_3674906_+	hypothetical protein	NA	NA	NA	NA
WP_016850466.1\|3675342_3676026_-	7-carboxy-7-deazaguanine synthase QueE	J9PV61	Bacillus_phage	3.0e-38	41.0
3675061:3675105	attR	NA	NA	NA	NA
WP_011052060.1\|3676068_3676887_-	tol-pal system protein YbgF	NA	NA	NA	NA
WP_003482562.1\|3676893_3677412_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_003482565.1\|3677469_3678789_-	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA
WP_029829330.1\|3678974_3680015_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_016849299.1\|3680004_3680454_-	protein TolR	NA	NA	NA	NA
WP_003482569.1\|3680611_3681391_-	protein TolQ	NA	NA	NA	NA
WP_003482571.1\|3681402_3681861_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_003482572.1\|3681913_3682954_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.7e-06	28.2
WP_016849298.1\|3682993_3683224_-	hypothetical protein	NA	NA	NA	NA
WP_005921446.1\|3683226_3685131_-	potassium transporter Kup	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	3.7e-78	33.7
WP_003482577.1\|3685327_3685912_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_003482580.1\|3686030_3686555_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_003482581.1\|3686684_3687413_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_029829331.1\|3687502_3688180_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_005913643.1\|3688277_3688805_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016850983.1\|3689227_3690994_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_029829333.1\|3691152_3691896_+	DUF3011 domain-containing protein	NA	NA	NA	NA
WP_016850980.1\|3692844_3693129_+	hypothetical protein	NA	NA	NA	NA
WP_026007196.1\|3693286_3693826_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	9.6e-24	34.9
WP_098477664.1\|3694098_3695201_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.7e-44	41.9
WP_087943921.1\|3696214_3697359_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_124632122.1\|3697908_3698304_-	NYN domain-containing protein	NA	NA	NA	NA
WP_145525914.1\|3698689_3702184_+	Avirulence protein AvrBs3	NA	NA	NA	NA
WP_124632114.1\|3702491_3702983_-	hypothetical protein	NA	NA	NA	NA
WP_016849979.1\|3707390_3708353_+\|transposase	IS1595-like element IS1595 family transposase	NA	NA	NA	NA
WP_026007111.1\|3710648_3711926_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_005913639.1\|3712237_3712531_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_003489572.1\|3712987_3714232_+	MFS transporter	NA	NA	NA	NA
WP_029996360.1\|3717235_3719386_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

DBSCAN-SWA_3

4231285 : 4243055

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005913455.1\|4231285_4232632_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	7.5e-33	27.1
WP_005913454.1\|4232678_4234082_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-47	30.0
WP_016850197.1\|4234364_4235531_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	2.7e-116	58.1
WP_029829443.1\|4235871_4236771_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.1e-27	35.7
WP_016851441.1\|4236767_4237325_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.6e-44	48.9
WP_005913450.1\|4237321_4238209_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.5e-94	57.5
WP_005920787.1\|4238260_4239316_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.0e-83	47.4
WP_016851442.1\|4239535_4240282_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_016851443.1\|4240281_4241226_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_144363104.1\|4241389_4242118_+	hypothetical protein	NA	NA	NA	NA
WP_005913435.1\|4242098_4243055_+	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	1.8e-25	27.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041961

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection