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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042045 Staphylococcus aureus strain B2-15A plasmid pSALNCL17, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP042043 Staphylococcus aureus strain B2-15A chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 5 1 8 0
NZ_CP042044 Staphylococcus aureus strain B2-15A plasmid pSALNCL1.4, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP042043
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_1 628121-628222 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_2 975165-975247 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_3 1016114-1016192 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_4 1021572-1021662 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_5 1064969-1065050 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_6 1870771-1870855 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_7 2444918-2444998 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_8 2457239-2457324 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042043_9 2565282-2565362 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP042043_3 3.1|1016138|31|NZ_CP042043|CRISPRCasFinder 1016138-1016168 31 NZ_CP042043.1 513011-513041 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 389740-389764 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 389798-389822 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 512933-512957 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 513043-513067 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 851348-851372 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 1599428-1599452 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 1885378-1885402 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 974206-974230 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 1065042-1065066 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 1870847-1870871 0 1.0
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 2210881-2210905 0 1.0
NZ_CP042043_3 3.1|1016138|31|NZ_CP042043|CRISPRCasFinder 1016138-1016168 31 NZ_CP042043.1 512956-512986 1 0.968
NZ_CP042043_3 3.1|1016138|31|NZ_CP042043|CRISPRCasFinder 1016138-1016168 31 NZ_CP042043.1 1905123-1905153 1 0.968
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 512988-513012 1 0.96
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 1191704-1191728 1 0.96
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 1905097-1905121 1 0.96
NZ_CP042043_4 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder 1021605-1021629 25 NZ_CP042043.1 1905211-1905235 1 0.96
NZ_CP042043_5 5.1|1064993|34|NZ_CP042043|CRISPRCasFinder 1064993-1065026 34 NZ_CP042043.1 1599527-1599560 1 0.971
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1028740-1028770 1 0.968
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1028796-1028826 1 0.968
NZ_CP042043_6 6.1|1870797|33|NZ_CP042043|CRISPRCasFinder 1870797-1870829 33 NZ_CP042043.1 389840-389872 2 0.939
NZ_CP042043_6 6.1|1870797|33|NZ_CP042043|CRISPRCasFinder 1870797-1870829 33 NZ_CP042043.1 1599528-1599560 2 0.939
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 275759-275789 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1028852-1028882 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1065305-1065335 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1289221-1289251 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1689440-1689470 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 2209533-2209563 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 2554506-2554536 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 2730391-2730421 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 589383-589413 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 851406-851436 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1393388-1393418 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1599486-1599516 2 0.935
NZ_CP042043_9 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder 2565307-2565337 31 NZ_CP042043.1 1885435-1885465 2 0.935

1. spacer 3.1|1016138|31|NZ_CP042043|CRISPRCasFinder matches to position: 513011-513041, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

2. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 389740-389764, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

3. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 389798-389822, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

4. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 512933-512957, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

5. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 513043-513067, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

6. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 851348-851372, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

7. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 1599428-1599452, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

8. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 1885378-1885402, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

9. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 974206-974230, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

10. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 1065042-1065066, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

11. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 1870847-1870871, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

12. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 2210881-2210905, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

13. spacer 3.1|1016138|31|NZ_CP042043|CRISPRCasFinder matches to position: 512956-512986, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

14. spacer 3.1|1016138|31|NZ_CP042043|CRISPRCasFinder matches to position: 1905123-1905153, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

15. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 512988-513012, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaatttc	Protospacer
********************* ***

16. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 1191704-1191728, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttagaaattc	Protospacer
***************** *******

17. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 1905097-1905121, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

18. spacer 4.1|1021605|25|NZ_CP042043|CRISPRCasFinder matches to position: 1905211-1905235, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

19. spacer 5.1|1064993|34|NZ_CP042043|CRISPRCasFinder matches to position: 1599527-1599560, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

20. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1028740-1028770, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

21. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1028796-1028826, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

22. spacer 6.1|1870797|33|NZ_CP042043|CRISPRCasFinder matches to position: 389840-389872, mismatch: 2, identity: 0.939

attgggaatccaatttctctgtgttgggaccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** *******.****

23. spacer 6.1|1870797|33|NZ_CP042043|CRISPRCasFinder matches to position: 1599528-1599560, mismatch: 2, identity: 0.939

attgggaatccaatttctctgtgttgggaccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** *******.****

24. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 275759-275789, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

25. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1028852-1028882, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

26. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1065305-1065335, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

27. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1289221-1289251, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

28. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1689440-1689470, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

29. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 2209533-2209563, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

30. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 2554506-2554536, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

31. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 2730391-2730421, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

32. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 589383-589413, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

33. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 851406-851436, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

34. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1393388-1393418, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

35. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1599486-1599516, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

36. spacer 9.1|2565307|31|NZ_CP042043|CRISPRCasFinder matches to position: 1885435-1885465, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042043_8 8.1|2457265|34|NZ_CP042043|CRISPRCasFinder 2457265-2457298 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP042043_8 8.1|2457265|34|NZ_CP042043|CRISPRCasFinder 2457265-2457298 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 8.1|2457265|34|NZ_CP042043|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 8.1|2457265|34|NZ_CP042043|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 953284 : 961105 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 973076 : 987719 16 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1069282 : 1133858 91 Staphylococcus_phage(80.26%) tail,plate,holin,integrase,capsid,portal,terminase,coat,head attL 1092159:1092218|attR 1134549:1134638
DBSCAN-SWA_4 1217159 : 1270693 54 Streptococcus_phage(33.33%) protease,bacteriocin,transposase,tRNA NA
DBSCAN-SWA_5 1290731 : 1299204 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1920310 : 1929353 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 2044901 : 2116514 67 Staphylococcus_phage(95.65%) protease,tRNA NA
DBSCAN-SWA_8 2220822 : 2320648 108 Staphylococcus_phage(74.24%) tail,plate,protease,holin,capsid,tRNA,integrase,portal,terminase,head attL 2220214:2220238|attR 2322934:2322958
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage