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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042109 Staphylococcus aureus strain B8-13D plasmid pSALNCG1.5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP042108 Staphylococcus aureus strain B8-13D plasmid pSALNCG17, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP042107 Staphylococcus aureus strain B8-13D chromosome, complete genome 9 crisprs WYL,cas3,DEDDh,DinG,csa3 5 1 8 1

Results visualization

1. NZ_CP042107
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_1 92257-92337 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_2 961538-961639 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_3 1308294-1308376 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_4 1349243-1349321 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_5 1354701-1354791 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_6 1397900-1397981 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_7 2204984-2205068 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_8 2779196-2779276 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042107_9 2791517-2791602 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP042107_4 4.1|1349267|31|NZ_CP042107|CRISPRCasFinder 1349267-1349297 31 NZ_CP042107.1 846428-846458 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 723158-723182 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 723216-723240 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 846350-846374 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 846460-846484 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 1184477-1184501 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 1933641-1933665 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 2219591-2219615 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 1307335-1307359 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 1397973-1397997 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 2205060-2205084 0 1.0
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 2545093-2545117 0 1.0
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1361869-1361899 1 0.968
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1361925-1361955 1 0.968
NZ_CP042107_4 4.1|1349267|31|NZ_CP042107|CRISPRCasFinder 1349267-1349297 31 NZ_CP042107.1 846373-846403 1 0.968
NZ_CP042107_4 4.1|1349267|31|NZ_CP042107|CRISPRCasFinder 1349267-1349297 31 NZ_CP042107.1 2239335-2239365 1 0.968
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 846405-846429 1 0.96
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 1525917-1525941 1 0.96
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 2239309-2239333 1 0.96
NZ_CP042107_5 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder 1354734-1354758 25 NZ_CP042107.1 2239423-2239447 1 0.96
NZ_CP042107_6 6.1|1397924|34|NZ_CP042107|CRISPRCasFinder 1397924-1397957 34 NZ_CP042107.1 1933740-1933773 1 0.971
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 81481-81511 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 257307-257337 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 609178-609208 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1361981-1362011 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1398236-1398266 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1623434-1623464 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 2023653-2023683 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 2543745-2543775 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 922800-922830 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1184535-1184565 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1727601-1727631 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 1933699-1933729 2 0.935
NZ_CP042107_1 1.1|92282|31|NZ_CP042107|CRISPRCasFinder 92282-92312 31 NZ_CP042107.1 2219648-2219678 2 0.935
NZ_CP042107_7 7.1|2205010|33|NZ_CP042107|CRISPRCasFinder 2205010-2205042 33 NZ_CP042107.1 723258-723290 2 0.939
NZ_CP042107_7 7.1|2205010|33|NZ_CP042107|CRISPRCasFinder 2205010-2205042 33 NZ_CP042107.1 1933741-1933773 2 0.939

1. spacer 4.1|1349267|31|NZ_CP042107|CRISPRCasFinder matches to position: 846428-846458, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

2. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 723158-723182, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

3. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 723216-723240, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

4. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 846350-846374, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

5. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 846460-846484, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

6. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 1184477-1184501, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

7. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 1933641-1933665, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

8. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 2219591-2219615, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

9. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 1307335-1307359, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

10. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 1397973-1397997, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

11. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 2205060-2205084, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

12. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 2545093-2545117, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

13. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1361869-1361899, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

14. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1361925-1361955, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

15. spacer 4.1|1349267|31|NZ_CP042107|CRISPRCasFinder matches to position: 846373-846403, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

16. spacer 4.1|1349267|31|NZ_CP042107|CRISPRCasFinder matches to position: 2239335-2239365, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

17. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 846405-846429, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaatttc	Protospacer
********************* ***

18. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 1525917-1525941, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttagaaattc	Protospacer
***************** *******

19. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 2239309-2239333, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

20. spacer 5.1|1354734|25|NZ_CP042107|CRISPRCasFinder matches to position: 2239423-2239447, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

21. spacer 6.1|1397924|34|NZ_CP042107|CRISPRCasFinder matches to position: 1933740-1933773, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

22. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 81481-81511, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

23. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 257307-257337, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

24. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 609178-609208, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

25. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1361981-1362011, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

26. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1398236-1398266, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

27. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1623434-1623464, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

28. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 2023653-2023683, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

29. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 2543745-2543775, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

30. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 922800-922830, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

31. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1184535-1184565, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

32. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1727601-1727631, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

33. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 1933699-1933729, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

34. spacer 1.1|92282|31|NZ_CP042107|CRISPRCasFinder matches to position: 2219648-2219678, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

35. spacer 7.1|2205010|33|NZ_CP042107|CRISPRCasFinder matches to position: 723258-723290, mismatch: 2, identity: 0.939

attgggaatccaatttctctgtgttgggaccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** *******.****

36. spacer 7.1|2205010|33|NZ_CP042107|CRISPRCasFinder matches to position: 1933741-1933773, mismatch: 2, identity: 0.939

attgggaatccaatttctctgtgttgggaccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** *******.****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042107_9 9.1|2791543|34|NZ_CP042107|CRISPRCasFinder 2791543-2791576 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP042107_9 9.1|2791543|34|NZ_CP042107|CRISPRCasFinder 2791543-2791576 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 9.1|2791543|34|NZ_CP042107|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 9.1|2791543|34|NZ_CP042107|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1286413 : 1294234 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 1306205 : 1320848 16 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1402213 : 1468071 93 Staphylococcus_phage(79.49%) tail,coat,holin,terminase,integrase,capsid,portal,plate,head attL 1425090:1425149|attR 1468762:1468851
DBSCAN-SWA_4 1551372 : 1604906 54 Streptococcus_phage(33.33%) bacteriocin,protease,tRNA,transposase NA
DBSCAN-SWA_5 1624944 : 1633417 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 2254522 : 2263565 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 2379113 : 2450726 67 Staphylococcus_phage(95.65%) tRNA,protease NA
DBSCAN-SWA_8 2555034 : 2654860 108 Staphylococcus_phage(74.24%) tRNA,tail,holin,protease,terminase,integrase,capsid,portal,plate,head attL 2554426:2554450|attR 2657146:2657170
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP042107.1|WP_031760357.1|1310031_1310133_+|hypothetical-protein 1310031_1310133_+ 33 aa aa NA NA NA 1306205-1320848 yes