CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP036277	Planctomycetes bacterium Pan110 chromosome, complete genome	3 crisprs	cas8u1,cas3,csb2gr5,csb1gr7,cas1,cas2,DEDDh,RT,csa3,DinG,WYL,cas7,cas8u2	2	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP036277_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP036277_1

243643-244994

Unclear

Consensus_repeat	Method
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	PILER-CR
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CRISPRCasFinder
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CRT

18 spacers

cas2,cas1,csb1gr7,csb2gr5,cas3,cas8u1,WYL

The CRISPR arrays of NZ_CP036277_1

>merge|NZ_CP036277|1|243643-244994|PILER-CR,CRISPRCasFinder,CRT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCACATAGAACGGGATATGGCTTTCGCAGTAATGATCAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGAATTCGCCTGTGTCGGCATCCTCATTGTCAGCGTAGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCCGCCACCCTCAGTGGATGCCGACTCGAGCAACTTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGGTTTTCGGTTGCGGGATCCAGTTCAGATCAAACAACGGCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCAATCGCATCGGCTCAAGGGAATGTTTGTAATAAGGTTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCGGTTGTGGAACCGGCGGCCCGCTGGACTTCGGTGTCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCTCGCGGTGCGGAAACACGCTGCATTGTCGTACCGTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTGTGAATGGTACCACCTTCCGCTTAGCGTGCGGTGGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGAATTGAAAACTGGTGCTTTTACGACAATGGCACTATTGGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTGTACGGATACAGGAACGGTACGGCATGCACCGTTTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGACTTGTGCGACAACAGTCGCTGCCACGCCGCCTGTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCATGTGTCGCCGACCGTTCTCGTCGCAGAGTCCGATCAGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTGCTTCTCTCCTGCAGACACAACGCCAGTGAGTCTTCAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCGCGAAAAGCTTCAATAACCAAGTATGCCCGGTCCGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGGAGACATCTCGAAACTACTGCAGAAATCCTTTGGTGGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTGGTTTTCAGTCGACAACTTCGATATGAGACAGAGCGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCTGCCGAATCTCATGCGTAAATCGGTCTGTCAAAATCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGTAAATCAACCGAAAGGCCGGTGACGCCTCCTGCAGTAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

>NZ_CP036277|1|1|243643-244994|PILER-CR
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ACATAGAACGGGATATGGCTTTCGCAGTAATGATCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATTCGCCTGTGTCGGCATCCTCATTGTCAGCGTAG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CCGCCACCCTCAGTGGATGCCGACTCGAGCAACTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGTTTTCGGTTGCGGGATCCAGTTCAGATCAAACAACGGC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AATCGCATCGGCTCAAGGGAATGTTTGTAATAAGGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CGGTTGTGGAACCGGCGGCCCGCTGGACTTCGGTGTC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTCGCGGTGCGGAAACACGCTGCATTGTCGTACCGT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGTGAATGGTACCACCTTCCGCTTAGCGTGCGGTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATTGAAAACTGGTGCTTTTACGACAATGGCACTATTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGTACGGATACAGGAACGGTACGGCATGCACCGTTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GACTTGTGCGACAACAGTCGCTGCCACGCCGCCTGT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ATGTGTCGCCGACCGTTCTCGTCGCAGAGTCCGATCAG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGCTTCTCTCCTGCAGACACAACGCCAGTGAGTCTTCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CGCGAAAAGCTTCAATAACCAAGTATGCCCGGTCCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGAGACATCTCGAAACTACTGCAGAAATCCTTTGGTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGGTTTTCAGTCGACAACTTCGATATGAGACAGAGCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTGCCGAATCTCATGCGTAAATCGGTCTGTCAAAATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTAAATCAACCGAAAGGCCGGTGACGCCTCCTGCAGTA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

>NZ_CP036277|1|1|243643-244994|CRISPRCasFinder
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ACATAGAACGGGATATGGCTTTCGCAGTAATGATCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATTCGCCTGTGTCGGCATCCTCATTGTCAGCGTAG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CCGCCACCCTCAGTGGATGCCGACTCGAGCAACTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGTTTTCGGTTGCGGGATCCAGTTCAGATCAAACAACGGC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AATCGCATCGGCTCAAGGGAATGTTTGTAATAAGGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CGGTTGTGGAACCGGCGGCCCGCTGGACTTCGGTGTC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTCGCGGTGCGGAAACACGCTGCATTGTCGTACCGT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGTGAATGGTACCACCTTCCGCTTAGCGTGCGGTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATTGAAAACTGGTGCTTTTACGACAATGGCACTATTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGTACGGATACAGGAACGGTACGGCATGCACCGTTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GACTTGTGCGACAACAGTCGCTGCCACGCCGCCTGT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ATGTGTCGCCGACCGTTCTCGTCGCAGAGTCCGATCAG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGCTTCTCTCCTGCAGACACAACGCCAGTGAGTCTTCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CGCGAAAAGCTTCAATAACCAAGTATGCCCGGTCCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGAGACATCTCGAAACTACTGCAGAAATCCTTTGGTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGGTTTTCAGTCGACAACTTCGATATGAGACAGAGCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTGCCGAATCTCATGCGTAAATCGGTCTGTCAAAATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTAAATCAACCGAAAGGCCGGTGACGCCTCCTGCAGTA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

>NZ_CP036277|1|1|243643-244994|CRT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ACATAGAACGGGATATGGCTTTCGCAGTAATGATCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATTCGCCTGTGTCGGCATCCTCATTGTCAGCGTAG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CCGCCACCCTCAGTGGATGCCGACTCGAGCAACTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGTTTTCGGTTGCGGGATCCAGTTCAGATCAAACAACGGC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AATCGCATCGGCTCAAGGGAATGTTTGTAATAAGGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CGGTTGTGGAACCGGCGGCCCGCTGGACTTCGGTGTC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTCGCGGTGCGGAAACACGCTGCATTGTCGTACCGT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGTGAATGGTACCACCTTCCGCTTAGCGTGCGGTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATTGAAAACTGGTGCTTTTACGACAATGGCACTATTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGTACGGATACAGGAACGGTACGGCATGCACCGTTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GACTTGTGCGACAACAGTCGCTGCCACGCCGCCTGT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ATGTGTCGCCGACCGTTCTCGTCGCAGAGTCCGATCAG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGCTTCTCTCCTGCAGACACAACGCCAGTGAGTCTTCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CGCGAAAAGCTTCAATAACCAAGTATGCCCGGTCCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGAGACATCTCGAAACTACTGCAGAAATCCTTTGGTGG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TGGTTTTCAGTCGACAACTTCGATATGAGACAGAGCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTGCCGAATCTCATGCGTAAATCGGTCTGTCAAAATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTAAATCAACCGAAAGGCCGGTGACGCCTCCTGCAGTA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP036277.1\|WP_145102977.1\|245107_245362_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP036277.1\|WP_145102966.1\|233084_234038_-\|hypothetical-protein	cas8u1	mkCas0114_cas8u1_CAS-I-U	unknown
NZ_CP036277.1\|WP_145102958.1\|228479_228782_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP036277.1\|WP_145102962.1\|230893_231304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP036277.1\|WP_145102963.1\|231813_232830_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP036277.1\|WP_145103000.1\|254555_257186_-\|DUF1592-domain-containing-protein	unknown	unknown	gnl\|CDD\|377886
NZ_CP036277.1\|WP_145102995.1\|249391_249775_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145102970.1\|237192_239148_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_CP036277.1\|WP_145102992.1\|247768_249022_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP036277.1\|WP_145102998.1\|251556_254556_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|274224
NZ_CP036277.1\|WP_145102984.1\|246364_246712_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145102980.1\|245591_246290_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145102968.1\|234034_237196_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NZ_CP036277.1\|WP_145102972.1\|239147_240551_-\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NZ_CP036277.1\|WP_145102974.1\|243172_243466_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP036277.1\|WP_145102986.1\|246708_247062_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP036277.1\|WP_145102989.1\|247200_247836_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379018
NZ_CP036277.1\|WP_145102960.1\|229161_230511_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP036277.1\|WP_145103003.1\|257397_258453_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270205
NZ_CP036277.1\|WP_145116071.1\|241425_243120_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633

Protein	Function_ID	Function_description	E-value
NZ_CP036277.1\|WP_145102977.1\|245107_245362_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.39194e-11
NZ_CP036277.1\|WP_145102968.1\|234034_237196_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	6.49157e-99
NZ_CP036277.1\|WP_145102958.1\|228479_228782_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000573964
NZ_CP036277.1\|WP_145102962.1\|230893_231304_+\|hypothetical-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	2.29458e-05
NZ_CP036277.1\|WP_145102963.1\|231813_232830_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.16443e-44
NZ_CP036277.1\|WP_145103000.1\|254555_257186_-\|DUF1592-domain-containing-protein	gnl\|CDD\|377886	pfam07631, PSD4, Protein of unknown function (DUF1592). A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also match pfam07627, pfam07626, and pfam07624.	7.90554e-54
NZ_CP036277.1\|WP_145102970.1\|237192_239148_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.16064e-41
NZ_CP036277.1\|WP_145102992.1\|247768_249022_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	2.21469e-63
NZ_CP036277.1\|WP_145102998.1\|251556_254556_-\|c-type-cytochrome	gnl\|CDD\|274224	TIGR02603, CxxCH_TIGR02603, putative heme-binding domain, Pirellula/Verrucomicrobium type. This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).	6.25419e-29
NZ_CP036277.1\|WP_145102972.1\|239147_240551_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.20389e-63
NZ_CP036277.1\|WP_145102974.1\|243172_243466_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.00172e-13
NZ_CP036277.1\|WP_145102986.1\|246708_247062_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.08596e-38
NZ_CP036277.1\|WP_145102989.1\|247200_247836_+\|hypothetical-protein	gnl\|CDD\|379018	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This is a leucine-zipper-like or homeodomain-like region of transposase TnpC of insertion element IS66.	1.43581e-05
NZ_CP036277.1\|WP_145102960.1\|229161_230511_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.7754e-07
NZ_CP036277.1\|WP_145103003.1\|257397_258453_-\|hypothetical-protein	gnl\|CDD\|270205	cd14439, AlgX_N_like, N-terminal catalytic domain of putative alginate O-acetyltranferase and similar proteins. The alginate biosynthesis protein AlgX appears to be directly involved in the O-acetylation of alginate, an exopolysaccharide that is associated with the formation of persistent biofilms, such as those by mucoid strains of Pseudomonas aeruginosa that affect patients suffering from cystic fibrosis. Its N-terminal catalytic domain resembles SGNH hydrolases, though with a permuted topology. The active site matches that of the SGNH hydrolases, is well conserved, and has been verified experimentally. This wider family includes AlgX, AlgJ, AlgV, and a number of uncharacterized families, some of which may have been mis-annotated in sequence databases.	2.84995e-53
NZ_CP036277.1\|WP_145116071.1\|241425_243120_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	8.54343e-112

>NZ_CP036277.1|WP_145102974.1|243172_243466_+|CRISPR-associated-endonuclease-Cas2
MRNVYLISYDISSPKRYRKIYPIMCGHGDAVQYSVFKAELTEIELHSLKESLWPLLNHSEDRIMIVNLGPIEGRGDNCIEFWGDSKVTSQERSAIIL
>NZ_CP036277.1|WP_145116071.1|241425_243120_+|CRISPR-associated-endonuclease-Cas1
MLNEFTYCPRLGYLEWVQGEWADNLETRQGSFGHRVVDKPDRKKINSPKNKQADVLEEEEEDSDQIHARSIMLSSDQEGLIGKLDLVELDGTVATPVDYKRGKAPDIPEGAYEPERIQLCAQGLILRDQGYQCDSGILYFISSKRRVVIQFDDVLVARTRQLVQAFRETADAGIIPPPLEDSPKCPRCSLVGICLPDEMNLLQVEPLEHQDDSPSQSPLSDKPSQPRRLLPTKDNALPLYISEQGAFVGKSGERITIKMKKEELASVRLIDISQVCLFGSVTLSAQAISELSRRGIPICHFSYGGWFHSITSGFVHKNVELRIQQYATAQDSQRSLNVARQLIAGKIKNCRTLLRRHIENKQAPVLAKLADYHKRLADIDSAQSLLGIEGMAAKEYFGEFFTFFPDHPELAIDGRNRRPPRDPVNAVLSFLYSLLTKELTVVLQAVGFDPMLGLFHTPRYGRPSLALDLAEEFRPLIADSTALMVFNNGEVNTDSFIQRAGAITMTTAGRNSVIAAYERRMETEITHPIFGYKVCYRRILEVQSRLLARYLLGEIPEYPSFVTR
>NZ_CP036277.1|WP_145102972.1|239147_240551_-|type-I-U-CRISPR-associated-protein-Cas7
MATLTLKNIQDAVRDGAAARCRATLQPAGGEGTKVFPPTYADAVYAMEKRRLPDFPEPVDCVLLDSVQSQANRMEEALQQAIDDGTFKKAGISIPLIEVDFAPFWDPEKKNNDLTDKMRLLEPVGNVSSLQAPHRIADAILRDSVVDEEGNDKGKPFRAKKESDESSYGQKLRRVSNVNATALFELCPTALLFGMWDSTGPKGGLGAKFERVMVSEIAGINVAVGTKTSSRIDPLSIQRNAGPLYRRPNGSMTVNPGEAMDKIDKSDKPTGKKVLYKKNKEGEDVFYKPGDATYPAQGRPSEANHGNFPPSLSDRDPKTGDYLAGGVTISRADQTTVISFAALRRLRFPFDNQQSAERNLAAQTVLATLGFCAATLAAESGLDLRSRCLLWPTETLGWELLVKPGKPDDKREMTSKTAITLLKEALDAAKKQELSWREEPLKLRPSDDLVKLVVKSQQLTIQSGGEE
>NZ_CP036277.1|WP_145102970.1|237192_239148_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MGQLTIAWEYLTGCSVATNVSDRQRAEWPPHPARVFMALVAAWFETERDEAERAALCWLETLGDPELLLPPSESVFARSIVDVYVPVNDTEPINLGRNKLWKSICEQELITESDAQTFAKEINKKAKNTVAVPTILRMQLLERLSRTDSEVLKEVRRSVMAKVASVAWKDFVLEAIDLLPQFRGKRPRTFPTTWVGDAISYVRWSSVDDLQQHTPALRRLCSKVTRIGHASSLVRMWIADELPGDDEPIQSWEPTDTIAELYVRKVSPNFFESLKGLYGEDVRMQHEQLSAAIESLKTEKKTIKGKGAKERNAEIDQQISAVEAEREFINPHPPIRPVVGLWLGYRRVEPTNSPDAAHSHFDTDLLILTQQSGARLPLDATLQVTQALRRAIMVQCGTQPTPEWVSGHSEDGKPSKRKDGHLAVIPLPFVGHKHADGHLLGVALALPRSIARHERGECIGPLLLDHQGQPKTVELTLGRLGVWTLSKREWSDPRFSLKPESWTANPRGATTWGSVTPVVLDRFPKSDRLKDRVSWNEEVVETVKRACVRIGLPKPIEVDLDTTSWLRGVPRATGKRRRLRNGIDGNPHTDAALGDGFPAFPAKGTNASRPQIHVWLRFAQPVVGPVLIGAGRYLGYGLFKPLHKIREGELS
>NZ_CP036277.1|WP_145102968.1|234034_237196_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MNVPTLQDFDNYFNELHGHAPYDWQRRLARKVIAGSWPDIIDLPTGSGKTACLDISIFALAYQSTMLVKERTAPRRIFFCVNRRVIVDEAYQRAKKIAQAIWEAERESGRSKPVLQLIASALRTISGISDQEIPPLDVLELRGGIYRDNRWARSVTQPTIVCTTIDQLGSRLLFRGYGVSSGAAPIQAALIAYDSLVLLDEAHISRPFLQSLQWVEQYLNPDKWAEQSIGVSRMRVVPMTATPPQGTNTNDVLQLKNADRQNKGLNERLVCNKLANLKSVDNVVDAAVAVAKNSPEGQPTAIGVIVNRVATAKEIYRKIREQHSETVVELVIGSMRPLDRDLQTNRLQSLVGPDRPKKTGQTSFVVATQCLEVGADYDFDVLITECASLDSLRQRFGRLNRGGRPIPAKAVILIDEKQVKEESKLDDKKPLDPIYGNALPRTWNWLWEYAEATTTETEPTSSEDSQPKKRKRKPAGKPTESRSVNFGINAFNRLLEEHSDDGRIPETLLSPSSKLDTPVMLPAYIDLWCQTNPQPLPDPDVSLFIHGLQEGGRDVQVCWRADFIEDDAMTFKHWLDVVSLLPPTAAECMSVPIGRFKRWLLDEHRIADDETDLLITNQQNDSENGRLRTPCVLWKGVSESTLLKNVRDLYPGCTVVLPSSAQGWEELGHIPEPNQPTEVGVAEKTKPESDLSSYHEIESADHSHLDVAEPAFLQAKDRAVVRLHPVLKFLRQKVPAAQNVLDRLADDESPPSTPELRQLCSEVMREFLNDIDIHDVSDVQWEFYPDRRGLVITTRRRLDRVTEWYLPSLDDGEDQPTQTLRQNPVLLSNHTAHVVAEMDATLQRLPFPALDEVYRIAAELHDWGKADERFQALLRRTDRSDAWLFTSITSRLLAKSDSMPQTRNEREASRIRAGLPKGFRHEMLSLQLAEKSSNFPDDPLLLELILHLIAAHHGYARPFAPVVIDDDPPEVFIENVNITTADRLAFPPHRLDSGITERFWILTKRYGWWGLAYLEAVIRLADQQASAKECDGQYDDQAQEVERNELKAPEVAP
>NZ_CP036277.1|WP_145102966.1|233084_234038_-|hypothetical-protein
MTQSTNRAETENRESLLLPGLDGANPLGFLAALGVLRTLSLHNASITLHWTPANGTWCAALSAADAQLSKDDVLERLEAVLPAPDEDLCERILKDLGKLPDNSRHSHFGGKANAATQMDRVYVDLLAAFSSDCVPADAINQIQTVRRDYFLKNVESIVARTDRYHLERSLFQTWDYADSLENQSLHLDPSEDRRHAYQWNQPSGDPNRKKQGGMLGANRLAIEAIPLLVSVPINDRLNTLGFSGLKMGTVRWTWPIWTIPATRHLVSSLLTISVIQQDEIRPHDVLKLHEMGVSAVFRSELILVQQTKNFSPSRCIA
>NZ_CP036277.1|WP_145102963.1|231813_232830_+|WYL-domain-containing-protein
MMAESAQLMRQWRILQTLSHRKQGVTLQELAQEAEVSSRTISRDLTVLKTVGFPISEVTSAHGKKQWKIAGNVGIGQLQFTLEETAALYLGRQFLELMAGTLFWQGSHSAYQKIKSALSNPAVRFLEKLASAVHLTNHHIVNYAERAELIDQLMLAIEDHRLTVITYQSLRSTEPVTLYDIHPYALIFHKGALYLIAWSLDHGAIRTFKVDRISEVDVQPKLMSFQRPKDFHPAKYLEHSFGIFTEERAPQSIRIRFAPKVVRILQEKKFHSSQRLIHKRDGSVIAEYQLTGFEEIRPWILSFGRHARVLEPPELVETIREELDLMINVYTLGDRTYD
>NZ_CP036277.1|WP_145102962.1|230893_231304_+|hypothetical-protein
MKPYFSRKIGHTCERGIHECGQPVENLESTIDSTADEFHEILPLSKASFTGALYARDSVQQTSIRNQVRGIYEMAVNKGIYIPLENRAIDVLLVFAISRLYRDYSSLMQFVGRNSTQEGIRIISIDTELDSGRYVA
>NZ_CP036277.1|WP_145102960.1|229161_230511_+|response-regulator-transcription-factor
MNKLLLALQGFEDLGPLHERDMTEEKSDRVEMWLKEDVCPAVEALIDNRSFQIHTLWSVSHLRKGVGTAERQLVERVDNLLVKLAEQIKTCLPYLDQPTLTEFQLESIELIAQKNWFDLVNPDDFVLPTQHLMLDKSNEQHTFHFRKASQIKIPGDHVCDSMFARIAYWKKILDQVCRICFCAKRTEDEQSNREFSSLMYCVGQLDPSIEDLKKACLKTKQKILRDACITLSLVYLAYADHPDVNWLIRDSRQAKVITQSFRRSVVRPPGEIQHVEKQPNGSFIVIKKERALLCVPSVIRKIAKALADVKTIYDIPDDPDDLIDWACSHARLVLVDHSPRRVFWEGEPIERGWDTHPVNWDLLWKLANNPGKAVDQGMLSNPHKQSIRSRRSRLKDLLERFDVLNQLIKTVRGQGYCLELDKNNIILLESDGLGGLNRVPIRKASSNFP
>NZ_CP036277.1|WP_145102958.1|228479_228782_-|helix-turn-helix-domain-containing-protein
MATDWLTAQQAAEELGISVLTFYDWLAQSDRGEFAIRGQSQSINYFQGGRRGQGRIRIEPAEIKRLKEEMRVKPFTETRRRRPTNSKVYPGITVPLGRPD
>NZ_CP036277.1|WP_145102977.1|245107_245362_-|helix-turn-helix-domain-containing-protein
MKKNLYTQRQRILLDLLRKTRKEAGLRQDDVAERLGRPQSFVSKYESGERRLDILELYDVCEALGLTLNDFVEKLQAILLKNKY
>NZ_CP036277.1|WP_145102980.1|245591_246290_+|hypothetical-protein
MLVVHDIATLWWLLESPSSANEEKLPVGNCVRGGAGKLKKRGFSELQKFLAAMSAYTIGIKVKDDIADGRNWKTRMANWMYSGQFAKARTDLIEVGFDVENLERILNAQSDLESKREKDFEVASGPTSLAYGLVARETVKRCHSHFTEEQAQQIGEALGRTVYLADAIRDFSEDQGTSFNPLCLEVGPKIQTLPAALKNNVLSHIASHLKEASNLIDQAEEGLKRSWHAVER
>NZ_CP036277.1|WP_145102984.1|246364_246712_+|hypothetical-protein
MVQNNSSETAQVWADRLERFDQAEITVAQFCQNENVSKASYYYWRRKVRGTTRTDHQRLRESTSASPRQTARKPAGFLPVRLAAPPSPATVMAVDLPGGIRIRFEIPARNQEARS
>NZ_CP036277.1|WP_145102986.1|246708_247062_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MMGLPSGTPIYLCTEPVDFRNGFDGLTGIVTATLGQNVIDGSLFLFVNRRRDRIKALWWETGGLTLWYRRLEQGTVELPRPKDDKTHVTIDSVELAMWIAGVSLKSSRHRRKRMAAV
>NZ_CP036277.1|WP_145102989.1|247200_247836_+|hypothetical-protein
MVDESLPHDIQDCHRLIVMLQRQVDDGQQTINQQATQLSLKDKLVEEQAHSVLQLKDNQDQLHEKVTELNLTIEKLLKQLYGRKSERRIDGAGQLLLDLGEEATPEVVSALEEAIRHAEQIARDAAESNRKCKPRRPRRNDRKFPAHLPRYEKLVDLPKEQREGLKLIGYDEVETLELIRSELRVRVTRYAKYAHPQVCAPNGQNPRHPQP
>NZ_CP036277.1|WP_145102992.1|247768_249022_+|IS66-family-transposase
MPSMRTHKYAHPTDKTQGILSPERPTGLVEGHRFDPSIGVEVVAAKYFYHLPFYRQQDLFAGSGWTPSRSTLQNIEAGVEFALRPLAAHLRSYLKQDQTIGCDDTGVLLITPAAMPDLSRHPRGQRIGEVLETAIAAGKPSINAKMWGYYASRLPVVAFDFTVSRHRDGPDEVLRDFAGNLIGDCWSGFQKIEVRSGSRITFAACWAHARRKIDECRSAFPIQVAQLESWILMLYDVEDQIQKLNASQRLARRRSLSRHVLGLIEEYLSGEEMSPGRVLPKSNLGQAAAYVRRHWEALSRFIDDASIPIDNNDCEQLMKRVATGRKNWMFKGSVFAGDRAANLMTIVGTAIRNDLDVAAYLHDVLQRALDGETDWARLAPHAWRVDHPESIRTYRQDERRQSADRKRKRRARRRLSK
>NZ_CP036277.1|WP_145102995.1|249391_249775_-|hypothetical-protein
MKFLGCLIGFIVPITICITLITCATLATSVSYDKYVAVDFKGSPLSEIEAHRTILGMPELTGQLINISRNHNWQNEKSDAQFVKIYSEMEERDRAEEEQLKKSGRRQKIRATMPDGKRVELDAYIIL
>NZ_CP036277.1|WP_145102998.1|251556_254556_-|c-type-cytochrome
MSRISTFQSTSLSVVILLLMVLRGPVLECQGREPQIKALVPGLQVQRIPVQLTNINSLEYGPDGRLYAAGYDGRVHVLTDTDGDGVEDQADLFWSKAGDLLTPVGILPTKEGVYLAVRGKIALLKDTDGDGAADVSETVVSGWKREKINSDTRNDAAGIALDRQGNLYFSLGCMSYNNAWQLDSKGKSHYDIHSERGTILKVSPDRKTRQVLVTGTRFIIGLDINQHGDLFATDQEGDTWFPGGNPRDELLHVIPGRHYGFPFRHPKYLPDVVDEPAVVGFSPQHQSTCGFRFNEQRDHRAPFGPDHWEGNALVTGFSRGKLWRVPLVKTRAGYVGKQIQFLSIEGLPTDLTVSPRGDLVVTCHSGRPDWGAGPAASGRLYKIHYDRNIPQPVCCWPSSPFELSVAFDAPIDPQKLGPPRIEVGAFVREGDQHEWIWPGYEVVKAEKKAFRQKQKVFSRRISSDRRTVTYSTTPLPWRARYGITLPGVAASDSDAKSKGETVELSCDMSGVSANWIREGEEQPAWSGWLPHLDSQVAFSLTQGSSEHARLQKLVNERGRLSLRAQLILPGQKVRLRFTGASPFVVRCGSDEKKSQVEGTRQIVEMNMTGKKAPMQDQPRGGREQVLPTERVQLEIEIFTNNQTGAPLLDASYQADYDPHERPLRLEHLSVPWAPRQSTPPGKANEISSVKELDGDPERGRAIFFGKKANCAACHRFGGQGGTVAADLTVSVHRDPDAVLRDIIEPGAAINPEYVSYVVVTESGRSLTGLFRSADDNSVTLIDAQTKIHRIPRDEIEAIRASNVSLMPTGFARLGKQQLEDLVAFLCSEDPVAKRQGLPTGVISREYWLNLSRVSIQGLTSLPDFPDHPDGLQLLTRFEGPRNWKEHYGARIYGFIHPPQTGDYVFWLAADDHAEIWLSEDQKPSREKRIVKLDRWTRADDWNTYPEQKSKPIHLEAGKRYFIEAIQVEATVDDCLSVGWRLPDGTLERPIPGKRLSSGR
>NZ_CP036277.1|WP_145103000.1|254555_257186_-|DUF1592-domain-containing-protein
MHSIRKEAFFVCWSLTLLSTGSLHAAEGARVTRDLQVLYTFAAGKGDLIRDRSNVGQPLNLKIKNKSSVKWQNGTLSVQGSARIQSLEPATKIIKSLKRTNACTLEAWLKPANDRQTGPARILSLSDNPSRRNFTLGQDGRRYDVRLRTTSTSGNGIPSLTSPDRMAQTRLTHVVYTRDAGGRAQLYVDGKRQAEKRIKGSFSRWDQTFKLSLANEGTGDRPWQGELHLMAVYSRALTQAEVNENYRAGSTGKLSEQQLHELAQAKQRRLFETRVAPLLAQNCLECHDAASRKGGLDLSHKATALAGGESGKVIVPGAAEKSLLWDQIVSGDMPPGNTTLKPAEKALLKEWLNGGAVWSVSMIDPAIYNGNSSAQEIWVQRLTIPEYIETVKSTVGVDMSKEAYELLPPDLRADGFSNTAYNLNVDLKHVQAYARLAELIVQRMDVMKFARRFSKSKSLNTDATMRKFIGAMGQWLFRGPLDEREITNFSGIATTVASAGGTYEEGVSLIVEAMLQSPRFIYRIEAQRGDGTALSAGSYELASRLSYIIWGGPPDEELLKAAQAGKLSDREVCRKQVERMLKDPRAVAQSMRFVSDWLNLDRLANMRPNEARFPEWDPQLGLDMREETLAFFQEIAWKENRRLSDLFNAQVTYATPRLARHYGLKPQGKGLQRYDLSGVPARGGLLTQGSILTIGGDDASMVTRGLFVLKDVLRGVIGAPPPGVDTTPVPSRPGVSQRMIAEQRMANEACAGCHTRFEPLAFGLEQFDGIGAFHDIDEYKNRLRSDGEILVPGAAKSVKYSTPAELMDLLADSERVRETITWKLTQFSLGRPLGPADASTVQQIYEASRKGGGTYSSLITAIVMSDLVQKVRTEAK
>NZ_CP036277.1|WP_145103003.1|257397_258453_-|hypothetical-protein
MNYLHFVKVLSALSVLIATVICGPTFAAEPDAVQSFCDELSAKVVRAEKEQQSALPGKDGWMFFVPELRALSVGPFWGKDAIQVSRSAKPAYADPLPAIVDFNNQLRKSGIHLLVVPVPAKAAVYPEQISSYHNRKPVLLDETQRRFYRVLADQGVAVLDLLPTFLEHRNDSNGLLYCKTDTHWSGRGAALAAEQIATCFETQPWLRESKRTKYASQVRNGEITGDLARMLDETNPVKETLPLTFIGTGSDLTPVQTDRQSPVLLIGDSHTLVFHDPTLHARGAGLPDLLAKQFGFPVDLIGVRGSGATTTRIELLRRRDNLKGKKLVIWCFSFREFTESYSGWRKVPVIR

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Crispr_ID: NZ_CP036277_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP036277_2

6064975-6067119

Unclear

Consensus_repeat	Method
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	PILER-CR
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CRISPRCasFinder
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CRT

29 spacers

cas2,cas1,cas3,cas8u2,cas7,csb2gr5,WYL

The CRISPR arrays of NZ_CP036277_2

>merge|NZ_CP036277|2|6064975-6067119|PILER-CR,CRISPRCasFinder,CRT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCCCTGCTTTTCGGGTGCATAAGAGAATCTTGCTTGCCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCAACCACAGATCATCGTGTCGATCGGCAAAGGATTTGAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCAGTTTCCCTGGCACCGATACAGTCCACAGTCCCCGCGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCATTAAAGTTGGCGACCAGACCACTGATGACCTGGAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGAATACTATCGAGAACTGTGCAAAGCCAAAGTGCAAATGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGGTTTATTGACCGGGGCGGTCGCGGTCACTTCAGGTTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTCCCGGTAAACACGCTCAGACTCACGATCCCGATCATGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGTAGAGAACACCAGATTGAAACTCCCCTTCATAGATCGCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTTGCGACGGTCCTGGGCGGCTGCTTCGGCGGCTTCGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCTGGAAATCTGGGACGGAGCGATAGATCACGCTTCCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTCACTGGTGCAGCCGAAAAGGGGCACTCACTTGATGAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCTCGATGTGCTGAGTGGTACCTGTGTTGCCGTTTGTTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGGCCCCATGGGGGGGACGGGGCCTGACCGCAGTGAAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGTGACCACATCCGCGGGAACCACCGGATTCTCTGCCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTTGTTTGGTTTTCAGACAAGCTTTCTTCAAATCCTCAGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGGGAATGACGCGACGCAACTTCACTGAGTTCTGTTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCAACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGAAAAAGGTGGCGAGCAAGTTCAACGAACGCAACGCTGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCCTTGCGTGGTTTCAGTCGCTGGTCGAACGTCACCACTGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCAACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTGGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGGCAAAGACGGGATTGATCAGCTGGCCGCCAGCATCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCTCATTTGCAAATAAACAGTCTATCCGCTGTAAAACTCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCATAATTCTGAGTCGCATTTCTCAACGAACCTTTTACACCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCAGCAGGTGGGACAGGTCGGAAGCGGGTATTGCAAATCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCAATCTATCGCTGAATTTCCCTTGGGAAAACTCGATCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCGTGTCAGTCCGGTAATCGCCTGCTTGATTGCTTCGACCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGCACAGACAGTATCTTGCATGAATGCTACTTTGTCTTCCGTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

>NZ_CP036277|2|2|6064975-6067119|PILER-CR
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CCCTGCTTTTCGGGTGCATAAGAGAATCTTGCTTGCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACCACAGATCATCGTGTCGATCGGCAAAGGATTTGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AGTTTCCCTGGCACCGATACAGTCCACAGTCCCCGCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CATTAAAGTTGGCGACCAGACCACTGATGACCTGGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATACTATCGAGAACTGTGCAAAGCCAAAGTGCAAAT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGTTTATTGACCGGGGCGGTCGCGGTCACTTCAGGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCCCGGTAAACACGCTCAGACTCACGATCCCGATCAT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTAGAGAACACCAGATTGAAACTCCCCTTCATAGATCGC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TTGCGACGGTCCTGGGCGGCTGCTTCGGCGGCTTCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTGGAAATCTGGGACGGAGCGATAGATCACGCTTCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCACTGGTGCAGCCGAAAAGGGGCACTCACTTGATGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTCGATGTGCTGAGTGGTACCTGTGTTGCCGTTTGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGCCCCATGGGGGGGACGGGGCCTGACCGCAGTGAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTGACCACATCCGCGGGAACCACCGGATTCTCTGCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TTGTTTGGTTTTCAGACAAGCTTTCTTCAAATCCTCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGGAATGACGCGACGCAACTTCACTGAGTTCTGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAAAAAGGTGGCGAGCAAGTTCAACGAACGCAACGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTTGCGTGGTTTCAGTCGCTGGTCGAACGTCACCACT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGCAAAGACGGGATTGATCAGCTGGCCGCCAGCATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCATTTGCAAATAAACAGTCTATCCGCTGTAAAACTC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ATAATTCTGAGTCGCATTTCTCAACGAACCTTTTACACC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AGCAGGTGGGACAGGTCGGAAGCGGGTATTGCAAATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AATCTATCGCTGAATTTCCCTTGGGAAAACTCGATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTGTCAGTCCGGTAATCGCCTGCTTGATTGCTTCGACC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ACAGACAGTATCTTGCATGAATGCTACTTTGTCTTCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

>NZ_CP036277|2|2|6064975-6067119|CRISPRCasFinder
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CCCTGCTTTTCGGGTGCATAAGAGAATCTTGCTTGCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACCACAGATCATCGTGTCGATCGGCAAAGGATTTGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AGTTTCCCTGGCACCGATACAGTCCACAGTCCCCGCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CATTAAAGTTGGCGACCAGACCACTGATGACCTGGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATACTATCGAGAACTGTGCAAAGCCAAAGTGCAAAT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGTTTATTGACCGGGGCGGTCGCGGTCACTTCAGGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCCCGGTAAACACGCTCAGACTCACGATCCCGATCAT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTAGAGAACACCAGATTGAAACTCCCCTTCATAGATCGC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TTGCGACGGTCCTGGGCGGCTGCTTCGGCGGCTTCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTGGAAATCTGGGACGGAGCGATAGATCACGCTTCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCACTGGTGCAGCCGAAAAGGGGCACTCACTTGATGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTCGATGTGCTGAGTGGTACCTGTGTTGCCGTTTGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGCCCCATGGGGGGGACGGGGCCTGACCGCAGTGAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTGACCACATCCGCGGGAACCACCGGATTCTCTGCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TTGTTTGGTTTTCAGACAAGCTTTCTTCAAATCCTCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGGAATGACGCGACGCAACTTCACTGAGTTCTGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAAAAAGGTGGCGAGCAAGTTCAACGAACGCAACGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTTGCGTGGTTTCAGTCGCTGGTCGAACGTCACCACT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGCAAAGACGGGATTGATCAGCTGGCCGCCAGCATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCATTTGCAAATAAACAGTCTATCCGCTGTAAAACTC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ATAATTCTGAGTCGCATTTCTCAACGAACCTTTTACACC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AGCAGGTGGGACAGGTCGGAAGCGGGTATTGCAAATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AATCTATCGCTGAATTTCCCTTGGGAAAACTCGATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTGTCAGTCCGGTAATCGCCTGCTTGATTGCTTCGACC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ACAGACAGTATCTTGCATGAATGCTACTTTGTCTTCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

>NZ_CP036277|2|2|6064975-6067119|CRT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CCCTGCTTTTCGGGTGCATAAGAGAATCTTGCTTGCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACCACAGATCATCGTGTCGATCGGCAAAGGATTTGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AGTTTCCCTGGCACCGATACAGTCCACAGTCCCCGCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CATTAAAGTTGGCGACCAGACCACTGATGACCTGGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAATACTATCGAGAACTGTGCAAAGCCAAAGTGCAAAT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGTTTATTGACCGGGGCGGTCGCGGTCACTTCAGGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCCCGGTAAACACGCTCAGACTCACGATCCCGATCAT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTAGAGAACACCAGATTGAAACTCCCCTTCATAGATCGC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TTGCGACGGTCCTGGGCGGCTGCTTCGGCGGCTTCG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTGGAAATCTGGGACGGAGCGATAGATCACGCTTCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCACTGGTGCAGCCGAAAAGGGGCACTCACTTGATGA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTCGATGTGCTGAGTGGTACCTGTGTTGCCGTTTGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGCCCCATGGGGGGGACGGGGCCTGACCGCAGTGAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCTTTTCAAACGCGGCCCGAAAATCCACTGCATCAA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTGACCACATCCGCGGGAACCACCGGATTCTCTGCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TTGTTTGGTTTTCAGACAAGCTTTCTTCAAATCCTCA
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGGAATGACGCGACGCAACTTCACTGAGTTCTGTT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GAAAAAGGTGGCGAGCAAGTTCAACGAACGCAACGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	CTTGCGTGGTTTCAGTCGCTGGTCGAACGTCACCACT
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AACGAAGCGAAAAAAGGCGTTGAGTATGGGGGCTG
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GGCAAAGACGGGATTGATCAGCTGGCCGCCAGCATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	TCATTTGCAAATAAACAGTCTATCCGCTGTAAAACTC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ATAATTCTGAGTCGCATTTCTCAACGAACCTTTTACACC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AGCAGGTGGGACAGGTCGGAAGCGGGTATTGCAAATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	AATCTATCGCTGAATTTCCCTTGGGAAAACTCGATC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	GTGTCAGTCCGGTAATCGCCTGCTTGATTGCTTCGACC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC	ACAGACAGTATCTTGCATGAATGCTACTTTGTCTTCC
GTTTTCCGTCCTAACATTGGACGGCCCCATTGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP036277.1\|WP_145113035.1\|6072146_6072719_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145113021.1\|6064504_6064798_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP036277.1\|WP_145116435.1\|6062746_6064453_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP036277.1\|WP_145113039.1\|6073085_6073280_+\|DUF2997-domain-containing-protein	unknown	unknown	gnl\|CDD\|314207
NZ_CP036277.1\|WP_145113025.1\|6067857_6069147_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145113033.1\|6071255_6071801_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145113014.1\|6055220_6056063_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_CP036277.1\|WP_145113029.1\|6069945_6070167_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197775
NZ_CP036277.1\|WP_145113016.1\|6056719_6057982_-\|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09678_cas7_CAS-I-U	gnl\|CDD\|187809
NZ_CP036277.1\|WP_145113027.1\|6069624_6069939_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145113037.1\|6072720_6073089_+\|DUF1257-domain-containing-protein	unknown	unknown	gnl\|CDD\|377725
NZ_CP036277.1\|WP_145113013.1\|6054063_6054903_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_CP036277.1\|WP_145113031.1\|6070473_6071193_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145116436.1\|6073384_6073945_+\|ATP-dependent-endonuclease	unknown	unknown	unknown
NZ_CP036277.1\|WP_145113017.1\|6058040_6058967_-\|type-I-U-CRISPR-associated-protein-Cas8c	cas8u2	cd09765_cas8u2_CAS-I-U	gnl\|CDD\|274984
NZ_CP036277.1\|WP_145113012.1\|6052894_6053908_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP036277.1\|WP_145113019.1\|6058953_6061887_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|187827
NZ_CP036277.1\|WP_145113011.1\|6050891_6052241_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|366125
NZ_CP036277.1\|WP_145113023.1\|6067517_6067739_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP036277.1\|WP_145113015.1\|6056090_6056723_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005

Protein	Function_ID	Function_description	E-value
NZ_CP036277.1\|WP_145113021.1\|6064504_6064798_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.00333e-13
NZ_CP036277.1\|WP_145116435.1\|6062746_6064453_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.60413e-112
NZ_CP036277.1\|WP_145113039.1\|6073085_6073280_+\|DUF2997-domain-containing-protein	gnl\|CDD\|314207	pfam11211, DUF2997, Protein of unknown function (DUF2997). This family of proteins has no known function.	1.54355e-16
NZ_CP036277.1\|WP_145113014.1\|6055220_6056063_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.65803e-31
NZ_CP036277.1\|WP_145113029.1\|6069945_6070167_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	5.24975e-12
NZ_CP036277.1\|WP_145113016.1\|6056719_6057982_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|187809	cd09678, Csb1_I-U, CRISPR/Cas system-associated protein Csb1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Contains several motifs similar to Cas7 family; also known as GSU0053 family.	2.80016e-27
NZ_CP036277.1\|WP_145113037.1\|6072720_6073089_+\|DUF1257-domain-containing-protein	gnl\|CDD\|377725	pfam06868, DUF1257, Protein of unknown function (DUF1257). This family contains hypothetical proteins of unknown function that are approximately 120 residues long. Family members include eukaryotic and bacterial proteins.	0.00908259
NZ_CP036277.1\|WP_145113013.1\|6054063_6054903_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	5.39284e-13
NZ_CP036277.1\|WP_145113017.1\|6058040_6058967_-\|type-I-U-CRISPR-associated-protein-Cas8c	gnl\|CDD\|274984	TIGR04106, hypothetical_protein_GobsU_11505, CRISPR-associated protein GSU0052/csb3, Dpsyc system. This model describes a CRISPR-associated (cas) protein unique to the Dpsyc subtype (named for Desulfotalea psychrophila), a variant type I-C subtype, although not universal to the that subtype. Members of this family occur in CRISPR loci of Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, Rhodospirillum centenum SW, Planctomyces limnophilus DSM 3776, and Methylosinus trichosporium OB3b.	1.05856e-42
NZ_CP036277.1\|WP_145113012.1\|6052894_6053908_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.25719e-43
NZ_CP036277.1\|WP_145113019.1\|6058953_6061887_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187827	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DNA helicase Cas3; This protein includes both DEAH and HD motifs; signature gene for Type I.	5.08134e-134
NZ_CP036277.1\|WP_145113011.1\|6050891_6052241_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|366125	pfam00486, Trans_reg_C, Transcriptional regulatory protein, C terminal.	0.000193349
NZ_CP036277.1\|WP_145113023.1\|6067517_6067739_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.25397e-12
NZ_CP036277.1\|WP_145113015.1\|6056090_6056723_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.38469e-31

>NZ_CP036277.1|WP_145113021.1|6064504_6064798_+|CRISPR-associated-endonuclease-Cas2
MRNVYLISYDITSPKRYRKIYPIMCGHGDAVQYSVFKAELTEIELHSLKESLWPLLNHSEDRIMIVNLGPIEGRGDNCIEFWGDSKMTSQERSAIIL
>NZ_CP036277.1|WP_145116435.1|6062746_6064453_+|CRISPR-associated-endonuclease-Cas1
MLNEFTYCPRLGYLEWVQGEWADNLETRQGSFGHRVVDKPDRKKINSPKNKQADVPEDEEDSDQIHARSIMLSSDLEGLIGKLDLVELDGTVATPVDYKRGKAPDIPEGAYEPERIQLCAQGLILRDQGYQCDSGILYFISSKRRVVIQFDDALVARTRQLVQAFRETADAGIIPPPLEDSPKCPRCSLVGICLPDEMNLLQVEPLAHQSELNQEDSPSQPPRNDKPSQPRRLLPTKDNALPLYISEQGAFVGKSGERITIKMKKEELASVRLIDISQVCLFGSVTLSAQAISELSRRGIPICHFSYGGWFHSITSGFVHKNVELRIQQYATAQDSQRSLSVARQLIAGKIKNCRTLLRRHIENKQAPVLAKLADYHKRLADIDSAQSLLGIEGMAAKEYFGEFFTFFPDHPELAIDGRNRRPPRDPVNAVLSFLYSLLTKELTVVLQAVGFDPMLGLFHTPRYGRPSLALDLAEEFRPLIADSTALMVFNNGEVNADSFIQRAGAITMTTAGRNSVIAAYERRMETEITHPIFGYKVCYRRILEVQSRLLARYLLGEIPEYPSFVTR
>NZ_CP036277.1|WP_145113019.1|6058953_6061887_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MVVTIRVLTGFDCSHNQGNFLRNFRNALGLAEHESPFPWQEELLARFIDEIGKRSSLDIPTGLGKTSVIAAWLVARSQGAALPRRLVYIVDRRAVVDQATREAEKLRSWVDSSPNVKSQLGLASDQSLPISTLRGQYVDNREWLEDPSAPAIIVGTVDMIGSRLLFEGYGVSRKMRPYHAGLLGADTLFVLDEAHLVPPFEMMLQTLVMNDTGFGPDHDLARLIPDFKLLSLSATGRSAEGEVWRLTEADLRHPVAKKRLEATKRLSFCESDGSKSLSELLAEEAWSLADREAKAVRVIVFSNSRDVAKKAKEAIEQLTGDTKQGINSMTIETELFVGARRVREREQAAEWLDAHGFLAGSEKAPQHPTFLFATSAGEVGVDLDADHMVCDLVEWERMVQRLGRVNRRGDGDAIVRVIVEWPSPDGPTQKAIAKLEAKRTKAEQAKVALFRTYRHRVETLRQAVVTLPQHGDWYDASPGAIRDPIATMLAPISDPGLKRMMFIGTGMAPDPRPLIAAATSPTPLRPALTRPIVEAWSMTSLEKHTGRPAVAPWLRGWVDDDPQTTVIWRRYLPVCENSSAAAKKQFADAAEFFEQAPPHLSETLETESRRVFDWLTKRAKTILKKMDNELPIGDDSDQSPQLQRDSIIGFVLGRALSVERFVSLEELAFEGDKKAVDRRKDELQRSLNNNTLVIDARFGGLSENGLLDDATKFKHSSTGDDEDWGLTGFRVRLSEDGSRSDDRIWRTCFRFVSRLSELGEPLSWLLVEKRRVSTTSEDARAITKTNQALSTHQEWAEREAKRLAKVLNLSPEYEQMLKVAARSHDEGKQSLRWQNTFSAPAEGRPFAKTRGPVKPRLLDGYRHEFGSLPYLERDPEFLSLSPDLQDLALHLVSAHHGFARPVIRTTGCEDAPPSALEHRAREVALRFARLQRRWGPWGLAWWESLLRAADQRASRLLDESPTNQETNDNQEGGHVDG
>NZ_CP036277.1|WP_145113017.1|6058040_6058967_-|type-I-U-CRISPR-associated-protein-Cas8c
MSMADASIPVDPLNPGHVFACLGFLETAEILLGNAAGGFDWSDESDVRFRLHADGEENPFIVVLKHLASANVTEIEPHDWPGENDPNAILSDVFPSRLADHYIKSDKKWSRTKLPCHVTFKESNVSIDLYGWSDGSSRPDFKLYAGNRTGTSIAHDMLCGKRAKPTKRTPEGKLETQGLLHLWEECADQLVENPFHLTCPLGGTFNMDPRGGWVALDLGFSPNELKDVSVVSSPVVEILGALGLEHARPDEYETRKIRYAVWGEMIPPILARAALSGVEIGVELRSFRFNLDLSGKNKVVTFAEPESE
>NZ_CP036277.1|WP_145113016.1|6056719_6057982_-|type-I-U-CRISPR-associated-protein-Cas7
MTDEEKAEPNKLTTELLDSWATDPKGPVALHLKQRLLAVEGVDGEQQIIYPPTYADIGYNIDRLADGTRVALIDSVGSQANRLEPIFKSASGFADLVPQIDIVLRKEGCGECTECKKAKPKVDKCENPWKEKRSLFDLAHRAADAVVQSSPTLLPKMAEAFKTMRKKGDASLLCTIAPTSLLFGCWDSRGGSGEKRPRLVRAIIRAWDVDELHAAAQFNSIWKAFDEEQKAELTAESKKKGKAKLSDKGFNDAPAVFRKVSQRAQSSMPEFRSTGPNPDRRVLGGIVARGPIQRDVTINLVALRGLNGGAQTDALRKYLLALSILSGTVDIELFLREGCHLRYADDADQWYAVPRRGKNAPVDLVSEDARKTVRGYAEEHSKPFNQAWEKLKLGNEHEFDLKTAKELLGKSTDEEEETGS
>NZ_CP036277.1|WP_145113015.1|6056090_6056723_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MSDALLISVRFHEGWYHGSGGSPSPARLFQALVAGAGLSGPLDEGTVEALEWLENQNHPIVASPHTTSQKPYVNYVPNNEADASNGYQERIKKAEKRIAPLLFDPAVPFLFAWKLTDDAAVEAAKRILPLADRVYQLGRTVDMAWAWAEFLSVDELRDRLSDYPGVIRHPSPGVGEVDCPAPGSLASLQQRYQAGAHQFARTADGKGQTF
>NZ_CP036277.1|WP_145113014.1|6055220_6056063_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MCYEGATSRFVFELRRSDDAGFAPWPLERSSALVKEIRDSVAEKLRHALEHRIPEIDRVLIGRRPNGENAGPTSARVRIIPLASIGHPQADMLIRRILIEVPGECPLRADDIAWAVSGLQLDRPVLDKQIDLTSSDDQAQLGFFGVDKPGRIWRSVTPVALSEAERRRIDPNRVKTDENEKKGGHEKYVEHERASFAIAQALRRANVAAKVSSIRLQREPFDRRGARVEQFAEGTRFSKHCLWHVELEFELPVSGPLLIGDGRFLGLGVMRPVTLEGDTK
>NZ_CP036277.1|WP_145113013.1|6054063_6054903_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTDLSEPKRFVQKKELPTVARYAIAGSVRPRLTEALWIGERVRTSLLKISDAAPVFLGRQKGSAEKALAQGHLHAHYLCESNKDPQGRITHITVYAPRGFSESDENTLNQFNRTWGSGGHDLQYVLLGLGQPEDFGGLDEKKGHSPILACSDNWISRTPFVPADRLRRAYQLIDPKERHRCELDLARMIRKELQRRNWMSEHLQKLVKIEAVLSPDTAGTRLGETHTTWLKFKRNRQKGGGRQGHSSGFGLKLTFSEPVRGPIILGYGCHIGLGQFLPE
>NZ_CP036277.1|WP_145113012.1|6052894_6053908_+|WYL-domain-containing-protein
MAESAQLMRQWRILQTLSHRKQGVTLQELAQEAEVSSRTISRDLTVLKTVGFPISEVTSAHGKKQWKIAGNVGIGQLQFTLEETAALYLGRQFLELMAGTLFWQGSHSAYQKIKSALSNPAVRFLEKLASAVHLTNHHIVNYAERAELIDQLMLAIEDHRLTVITYQSLRSTEPVTLYDIHPYALIFHKGALYLIAWSLDHGAIRTFKVDRISEVDVQPKLMSFQRPKDFHPAKYLEHSFGIFTEERAPQLIRIRFAPKVVRILQEKKFHSSQQLFHKRDGSVIAEYQLTGFEEIRPWILSFGRHARVLEPPELVETIREELDLMINVYTLGDRTYD
>NZ_CP036277.1|WP_145113011.1|6050891_6052241_+|helix-turn-helix-domain-containing-protein
MNKLLLALQGFEDLGPLHEQDMTEEKSDRVEMWLKEDVCPAVEALIDNRSFQIHTLWSVSHLRKGMGTAERQLVERVDNLLVKLAEQIKTCLPYLDQPTLTEFQLESIELIAEKNWFDLVNPDDFVLPTQHLMLDRSDEQHTFHFRKASQIKIPGDHVCDSMFARIEYWKKILDQVCRICFCAKRTEDEQSNREFSSLMYCVGQLDPSIEDLKKACLKTKQKILRDACVTLSLVYLAYADHPEVNWLIRDSRQAKVITQSFRRSVVRPPGELQHVEKQPNGSFIVIKKERALLCVPSVIRKIAKALADVKTIYDSPDDPDDLIDWACSHARLVLVDHFPRQVFWEGKSIDAKWDTEEIQWNLLWTLAKNPEKAVDREMLYQPQGQKINSRRHRLKKLLVDCSELNELITTVPTHGYRLELNSEGIILLESDGLGGLNRVPIRKASSNFL
>NZ_CP036277.1|WP_145113023.1|6067517_6067739_-|helix-turn-helix-domain-containing-protein
MAKRADISVRFGQRVRKLRKEQGYSQENFAYACELDRTYMGGIERGERNPTLRKIEQIADTLGISLAELMQGI
>NZ_CP036277.1|WP_145113025.1|6067857_6069147_+|hypothetical-protein
MLQPAERGIGINQWMMYLCFFPLALLLAGGCNDASQSNLPDYSTPSSEPLPAEYRILAQHLGMEMKTDPGQFRNDREIAEIMADLQAALLDIREIKSEDREIIYLTAQFRDAITLILKRLDNINGLPKPPDAGTLFAGSMLDGFFGNFAGSYQRSLDAEAKQNALNAELQAIVAGVDKIDAAQQLLPKVAEKYSATFSDSTGRIVVDFNEAWGEFGPNDWLLLQNRGETLENCTILVQLTGAKGEVRKNVHFLKEWPTDTNMWGRYQSGTEFLGRTVEKTTVTNVKKLDITIYSPEFATQIQYAYQGAEKDKDVAQICKELRFQGTYQPYVQGIIWDTQRGIQLTLDGVSFLPPCRVDVSFLKEGQSKAWFWKHDSWRKGETKYFNSPEGGLEFDPDLIEFQVSFPDTNFCHKATYHIEGESKKLIERK
>NZ_CP036277.1|WP_145113027.1|6069624_6069939_+|hypothetical-protein
MLQRQEIMLIRAALQFWYEEMDLEDLKMLAIYSGDPRIIQKWKKADIQQLRQQLLAARLRYAVCRPDATSVKIPRLFNTPEAASQSRTDNSDQLGIVLVPDPAI
>NZ_CP036277.1|WP_145113029.1|6069945_6070167_-|helix-turn-helix-domain-containing-protein
MAKRADILVRFGQRVRELRKEQGYSQENFAYACELDRTYVGGIERGERNLSLRNIERIADTLEISLTELMEGV
>NZ_CP036277.1|WP_145113031.1|6070473_6071193_+|hypothetical-protein
MESPQSQWWLAKNGMAEGPLSHQEISNALKSNKISLADYSYSSDEQEWKPLSAWSAFESGAEDGALQPPPAPPVESYSIEPLITNPRLSPMANWICIYTLQISPWLWCLYTISGMISGTTLGENAPLMGVEALGMMFGMLVSLGVTISLFIGGVRLRALSRSGPNIIILSIVVATSVHLLLFLGMMVVVVMTDQNSFASKTVAVDLIDYFVGLVGICESAFLLTAFFWLRRNARFLPLS
>NZ_CP036277.1|WP_145113033.1|6071255_6071801_+|hypothetical-protein
MTENIIPENREATKWRFDDQGLLAGPYSYNELVEYVELDYIQPETEIIHEDGRKYQAFEIGLFPGFVPAIPEPVDEHSTVPPLPGWNILAGVAFLSWITVKVLPLIPALRFLYSVKPYSMVIGGFAVVLIGCYTLLTGTAHDSEGNPEHRPVANRIAGLIVILIGTYLIGGGVSFFFPISK
>NZ_CP036277.1|WP_145113035.1|6072146_6072719_+|hypothetical-protein
MEKLTLLITLTLILLTGASCSSDENSRVAELATRQLDRQAEQNQRMAELQQEVASGSRELVEADARSRQEMVTLQREMQTERNEIGHQRDQLEAERRDLAESRNRDPIIAAAITRVAMIVVSLLPLLISWLLLSQKIDPADEQQMTELLLEDLVSAEPRLMPPANTDPDQPRLPDFPQQPDPPHPTERRT
>NZ_CP036277.1|WP_145113037.1|6072720_6073089_+|DUF1257-domain-containing-protein
MSHIVTIQTEVRDAEALGLACRRLELGEPVHETVPLFSGEATGYAVRLPDWRYPVVFDVDQGQVRYDNFEGRWGEPTHLNRLLQSYGVEKCRLEARRKGHSVLENQLSDGSIKLTIQIGEGQ
>NZ_CP036277.1|WP_145113039.1|6073085_6073280_+|DUF2997-domain-containing-protein
MKTIEIIISTDGQSRIETRGFTGSRCRDASRFLEAALGTVSSEQLTAEYHQSIQHQPNQLKQEN
>NZ_CP036277.1|WP_145116436.1|6073384_6073945_+|ATP-dependent-endonuclease
MTRISTLLHAEQPALPDLAAMEGNGELIFLPIGGHPRAWIRRLAPLQLPEFYLLDGEIHPETEQRETLVAQINRRPRCRAVLTQKRSLENYLHPRAIEAVANITPSFGDQDCVASEVAQRVFDSRHDDYCWERLDRRPRVKLANRAKHWLNTSAVEQMTVSLLQERDPDGEIISWLETIGQLAETA

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Crispr_ID: NZ_CP036277_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP036277_3

7310848-7310959

Orphan

Consensus_repeat	Method
GTGCCATCTGTCGGCTTGCCCGACAGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP036277_3

>merge|NZ_CP036277|3|7310848-7310959|CRISPRCasFinder
GTGCCATCTGTCGGCTTGCCCGACAGTGCTTGAATCAATGTGCGACAAAGCAAAAACGAGCAATCCAGGTGAGCGGCACGCCGGGTGCCACCTGTCGGCTTGCCCGACAGTG

>NZ_CP036277|3|3|7310848-7310959|CRISPRCasFinder
GTGCCATCTGTCGGCTTGCCCGACAGTG	CTTGAATCAATGTGCGACAAAGCAAAAACGAGCAATCCAGGTGAGCGGCACGCCGG
GTGCCACCTGTCGGCTTGCCCGACAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP036277.1\|WP_145114743.1\|7311138_7312029_-\|LamG-domain-containing-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP036277.1\|WP_145116560.1\|7314942_7316970_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225114
NZ_CP036277.1\|WP_145114749.1\|7316876_7318298_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP036277.1\|WP_145114757.1\|7323753_7325448_+\|flagellar-hook-basal-body-complex-protein	unknown	unknown	gnl\|CDD\|183687
NZ_CP036277.1\|WP_145114728.1\|7300792_7302799_+\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
NZ_CP036277.1\|WP_145114741.1\|7309836_7310712_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|370447
NZ_CP036277.1\|WP_145114737.1\|7307925_7308168_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145114745.1\|7312464_7314156_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP036277.1\|WP_145114753.1\|7321401_7322136_-\|RraA-family-protein	unknown	unknown	gnl\|CDD\|319245
NZ_CP036277.1\|WP_145114732.1\|7303354_7304047_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP036277.1\|WP_145114751.1\|7319005_7319566_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145105250.1\|7319841_7321230_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP036277.1\|WP_145114724.1\|7299086_7300148_-\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|368908
NZ_CP036277.1\|WP_145114735.1\|7304081_7307591_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|223650
NZ_CP036277.1\|WP_145114722.1\|7298241_7298838_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223961
NZ_CP036277.1\|WP_145114726.1\|7300520_7300793_+\|DUF3311-domain-containing-protein	unknown	unknown	gnl\|CDD\|371707
NZ_CP036277.1\|WP_145114755.1\|7322154_7323441_-\|DUF2088-domain-containing-protein	unknown	unknown	unknown
NZ_CP036277.1\|WP_145114747.1\|7314236_7314527_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP036277.1\|WP_145114730.1\|7302902_7303334_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP036277.1\|WP_145114739.1\|7308952_7309426_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP036277.1\|WP_145114743.1\|7311138_7312029_-\|LamG-domain-containing-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	1.67968e-18
NZ_CP036277.1\|WP_145116560.1\|7314942_7316970_+\|GAF-domain-containing-protein	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.09711e-141
NZ_CP036277.1\|WP_145114749.1\|7316876_7318298_+\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	2.88539e-24
NZ_CP036277.1\|WP_145114757.1\|7323753_7325448_+\|flagellar-hook-basal-body-complex-protein	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.7124e-47
NZ_CP036277.1\|WP_145114728.1\|7300792_7302799_+\|sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	9.28025e-42
NZ_CP036277.1\|WP_145114741.1\|7309836_7310712_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|370447	pfam09351, DUF1993, Domain of unknown function (DUF1993). This family of proteins are functionally uncharacterized.	0.00480675
NZ_CP036277.1\|WP_145114747.1\|7314236_7314527_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	4.93502e-13
NZ_CP036277.1\|WP_145114745.1\|7312464_7314156_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP036277.1\|WP_145114753.1\|7321401_7322136_-\|RraA-family-protein	gnl\|CDD\|319245	cd16841, RraA_family, ribonuclease activity regulator RraA family. RraA protein family is named after the regulator of ribonuclease activity A (RraA), a protein that binds to RNase E and inhibits RNase E endonucleolytic cleavages. Members also include proteins with other functions, like a 4-hydroxy-4-methyl-2-oxoglutarate/4-carboxy-4-hydroxy-2-oxoadipate (HMG/CHA) aldolase from Pseudomonas putida, which catalyzes the last step of the bacterial protocatechuate 4,5-cleavage pathway and the uncharacterized YER010Cp protein from yeast, an organism lacking RNAse E.	1.18079e-30
NZ_CP036277.1\|WP_145114732.1\|7303354_7304047_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.39045e-98
NZ_CP036277.1\|WP_145105250.1\|7319841_7321230_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	8.07973e-09
NZ_CP036277.1\|WP_145114724.1\|7299086_7300148_-\|DUF1080-domain-containing-protein	gnl\|CDD\|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	5.1268e-38
NZ_CP036277.1\|WP_145114735.1\|7304081_7307591_+\|FtsX-like-permease-family-protein	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.45885e-08
NZ_CP036277.1\|WP_145114722.1\|7298241_7298838_-\|hypothetical-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	3.83866e-13
NZ_CP036277.1\|WP_145114726.1\|7300520_7300793_+\|DUF3311-domain-containing-protein	gnl\|CDD\|371707	pfam11755, DUF3311, Protein of unknown function (DUF3311). This is a family of short bacterial proteins of unknown function.	8.05676e-05
NZ_CP036277.1\|WP_145114730.1\|7302902_7303334_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.74553e-34

>NZ_CP036277.1|WP_145114741.1|7309836_7310712_-|HEAT-repeat-domain-containing-protein
MRCWLLRLSGCLLLLVSLSTPVWALGEEDFGNKPLNAANFKDWPGIMPVVNDPHRVYHTWVNGNEHCYYRGDTTALNAALTHFAATPEKVHEVILLPGPVEVGSLLKAKTVTYNWSLHLVGGIAKAVAEKSQEEGFWSKYPVLTVYVGDTIQLDQLKLPQGVKVLELADLEARYLKGLSSADPTVRGLSMGSLAVLNPFSKRNMKAIAALMNDPNSWFRLNSVGALAEFGRLARSELPALRAALKTEDGHLRTRIEKTIEAIETAPDRTLAAKRHRELQLKIHQYCERLGK
>NZ_CP036277.1|WP_145114739.1|7308952_7309426_+|hypothetical-protein
MNNEQQLSTTTELTPSPRRYLSKAEQTVVVRLIQKMIGLGKFTSEIKTAIAARYNLSRRSATRYLHRARREMQEFVERDDDLHRTESFYFYLSVIENPESTGNQRLRARERIDRIMGIELPNQYHQRRKFSKSVEEIKSLSDEEFQAYYDKLMRDVT
>NZ_CP036277.1|WP_145114737.1|7307925_7308168_-|hypothetical-protein
MSNDVEDRNARLYQVLTKHHNLGIFVGLFFGLIVSREIREAFRDSAGYWGSLGVAIVLSALSAGVVAYVAFKLLDRKSSS
>NZ_CP036277.1|WP_145114735.1|7304081_7307591_+|FtsX-like-permease-family-protein
MNQARFVIKSLTYHWRTNLAVLLGVIAATAVIGGALIVGDSVRASLRQMTLDRLGKIDYVVSGHRFFREQLADDLQHSSELPQDIKTIAPALVLRGALEKNREDQHLRVGQVNIFGSDQRLWSLLEHSDLPPPEDDQAILNSRVAEQLQAEVGDEITLWIELPSAIPRDSLLGEKEEQSVEITLTVSQILDEDSKAGRLALLPNQQLPLDLFLSLDTLQSALDLDEIKPSRRDPKERPARVNSLFFSSHDEAIPDSPQARIIATDLEATLKQSLQLTDLNLKIVPHKDRNYLSLESEQMILDPQIEQAARDAAKALNVATSPVMVYIANEFIHPEPGQAKQSPPYSMYSIVAGLDFAEKPPFGPFKFIGDKPQLPLKENEIVLNDWLAKDLKAKIGDPIQMKYHVVGSRGELPEVEQTFTVAGIVALDGTPAADRKLTPEMEGITDADTFGDWKQPFPMKLDKVTDRDEEYWDKYRATPKAFLALETAQKLWNSRYGTLTSLRFATLPGKTLEESSTAFGSELLKNIDVLKMGLTVQPIKFLGLAAASGTTDFSGLFIGFSFFIILSAIILIRLLFKLGIDRRVSSIGLLSAIGFTPAQVRQIIFKEALIVILTGGILGILAAIGYASLMLYGLKTWWIGAIGTRFLFVDLTPMSLTIGFLIAVLFSSFVIWKSMSELKQISIRDLLSGVNTPDTEPVRARKRIGLTWKISTILALILVLATVTGIIPKQEAFSGFSWQTVCFFLVGTLSLVASLSFLSSFLRTDSTTPIQGKGALALMKLGFRNAGRFRQRSVLTTALIASATFVLVSVAAGHRNPAVEEPDIESGNGGFTLVAETSSPLIFDLDTPEGRDKMLVNVPNDPETQRLLNEMKAIPFRVKPGENASCLNIYQTTVPTILGVPQELIERGGFKFADTPGDNPWELLNQPQEDGSIPALGDMNTLMYSLHKGIGASVGIPSDERPEHELKIKGMFDGSIFQGVLLISEQHFQQLFPEQAGFQYFLIEVPTKDATQLSGILETGLTEYGFDSDLVSNRLADFLAVQNTYLSTFQTLGGLGLLLGTLGLATVMLRNVVERRSELALLRAVGMTGSDVALIVLAENAFLLVWGLASGIVSALLAMLPHLLSTGADLPWFSGFLILLAVLITGMLSAFLAVLSAVRAPILATLRAP
>NZ_CP036277.1|WP_145114732.1|7303354_7304047_+|ATP-binding-cassette-domain-containing-protein
MNDAQEQLVVRNLTKQFTLADESLSILSGVNLTLNRGEALAITGPSGSGKSTLLYILGVLDQPSAGEVIQFNQNPFTLDAKEQAEFRNQNIGFIFQDHHLMPQFSVLENVLIPTMVHQGSSTDAEERARHLLERVGLKDRLNHRPAQISGGERQRVAVCRALINNPRLLLADEPTGNLDRTNTEAIGKLLLEINQEQNTILICVTHSSELAALFPQHQRLRDGQLVTESV
>NZ_CP036277.1|WP_145114730.1|7302902_7303334_+|acyl-CoA-thioesterase
MSCTFKTTRRVEFHETDMAGIVHFSNFYKYMEQAEHEYYRSLGMTIVDKQPDGSVIGWPRVSAQCSFESPAYYGDLLEIRLTIERLGVKSLTIEYDIWRDDTKIAKGRMKTVCCHFTHGEPMKSIEIPEWIQQKIKDSQHPTT
>NZ_CP036277.1|WP_145114728.1|7300792_7302799_+|sodium:solute-symporter-family-protein
MIQLVIIGIYLGLLLFLGVFSSRLFRGTSQDYMLASHSIGPFLLLMSIFGTTMTAFALVGSSGEAYKEGVGVYGMLASSSGIIHSLCFFLLGIKLWSWGHKYGYTTQIQFFRERLESDKIGVILFPILVGLVIPYLLIGVMSSGVVISSITEGAFDSAFAAYDYGVPPWLGSLVISLVVLIYVFFGGMRGTAWANTFQTIVFMVLGVVTFFVISSKLGGLEAASHAVLEKNPSKLMRDVDPKDRAAYAKRYETWTLIARYNYATRVLKTLTLTPEQKKQAYEEFKPRMPNWQMTAEAVFAAKNSLYELTTEQTNKALLKQDDRVMPDPFPEKWTTDLMSHHALQEYPRKANAEAEQAMLIFGSKIGHPNHDLDPEDPSKGKKWTIKKALGVYRATNWAPDAPHPMSKLVFFTYFFVPLSVGMFPHLFQHWLTARSAGTFKLPVVAHPLFIMIVWVPCVLVGVWATSATFEGAPLFPPHFPANAVLAAMVKKMTSPVLAGFLTAGILAAIMSSLDSQFLCIGTMFTEDIVVHYGGKDRFTDKQVVVMARVFIILVVAVTYGFSLLEPRRVFTLGVWCFSGFSSLFPIIFAAVYWKRLTKAGAYAGVLVAIGTWLYLFKQAGYALKPNYTFLGMMPVATMVVASAAAMILVSLVTRPPSKETLVRFFPED
>NZ_CP036277.1|WP_145114726.1|7300520_7300793_+|DUF3311-domain-containing-protein
MRYAVYGLVVVLIILHQDNWLWDDKRLILGFMPITLLYQAGISIGAAIVWFLATKFAWPHHLEEIAQESPAPAAAPEAAQETAPETGDTE
>NZ_CP036277.1|WP_145114724.1|7299086_7300148_-|DUF1080-domain-containing-protein
MLRLAFVGLCCLGSVMTTEAFAQAKKGDRDYAVVDLKNVDEDFYYQGEYYGAIGADCNWCGAATIGLQVVARGDGHFFASLYQGGLPGNGWDLSAREELDGTRDGDVLTLTGKDLTLKVYENGPVEVLDTKGHLLGQLTKYHRSSVTLGATPPPGATVIFNGSSVDQLTGGQITPGGLLKEGTEFKKTYRSYRLHVEFRLPYMPYATGQARSNSGLYLQSRYEVQVLDSFGLEGVENECGGLYKQKRPRINMCFPPLSWQTYDIGFVAPKFDQDGKKIKDAYITVLLNGVPVHQDYAITAKTGGGKQEGPELYPIKLQDHRNPVRYRNIWIVDLSDQPDPQYCYPCRSLLCDK
>NZ_CP036277.1|WP_145114722.1|7298241_7298838_-|hypothetical-protein
MDYTLIAIIGLIVALLLFVAEIFVPSGGLIAILAITSMGASLWGAWMAWWGTSPGFWWTYIASVVILIPTTIGMAVKTFPNTAWGKKFIHEVPTLEEVTGFQAETEHLRSLIGKIGKTQTLLNPSGFVLVDHERHHCESQGMIVDPQVDVEIIAVEGTRLVVKVVKPTVKETPETDQETSSPNGPLADGALDFEVPET
>NZ_CP036277.1|WP_145114743.1|7311138_7312029_-|LamG-domain-containing-protein
MAGLRYQKERGKPGIDTQFQDAKRITLMNGILRHFVSGSFPGETEMRYQAALLSCCFLVSLLMNLVGQAEEPKPYAPQTGKHSLEFKGKGQVIIPKLRYDGSHPITLEAWAMPYEREEEVIRSSVVANLQLAGVGLHYSGGKWMAHFNEGRDSNYGYVSTVSNEDAVNNQPVHLAAVYDGGSFKLYVDGKQQDWVGQVTLTHVPSPFDFMVGADPNGKGKPHQFFVGAIDEVRISKVARYTDDFKPARRFQPDKETLVLYHFDEGVGDVAHDASGNHRDGKIKGAKWIKQIEKDEK
>NZ_CP036277.1|WP_145114745.1|7312464_7314156_-|dihydroxy-acid-dehydratase
MSSDSQPILNRYSSRITQPRSQGASQAMLYATGMTEEDMNKAEVGISSVWYEGNSCNMHLNILAAKVKEGVEASGMVGMRFNTIGVSDGISMGTDGMSYSLQSRDLIADSIETVTCAQWYDANISLPGCDKNMPGCLIAMGRFNRPSLMVYGGTIAPGCLNNQKLDIVSAFQSYGEYLAGTIDDETRKQIVQKSCPGAGACGGMYTANTMASAIEALGMALPYSSSIPAEHPDKLDECFRAGAAIRKLLELDLKPRDIMTREAFENAMVLTVALGGSTNAVLHMLAIARAVDVELTIDDFQSVSDRIPLLADFKPSGKYVMADLQEQGGTPAVLKYLLEQGLINGDCMTVTGKTHAENLADLPGLKEGQDIVHSVDNPIKPSGHLQILKGNLAPTGAVAKITGKEGLRFEGTANVFDSEEDMLKALEDKKINKGDVIIIRYEGPKGGPGMPEMLTPTSAIMGAGLGKDVALLTDGRFSGGSHGFIVGHVTPEAQDGGPIALVKNGDKVVIDAENNRMDMDVSDAELEERRKSWTAPPFKYTRGTLYKYIKNVKSASEGCVTDE
>NZ_CP036277.1|WP_145114747.1|7314236_7314527_-|antibiotic-biosynthesis-monooxygenase
MFCLNVILSLKDAADATEIEGLLAEACRLSRTEPGCLRFDVYHSEADPATFVLVEHWASEQAWQDHREEKAFKEIYEPQVLPRVERVPHRVKLLVE
>NZ_CP036277.1|WP_145116560.1|7314942_7316970_+|GAF-domain-containing-protein
MLLREYPVSKIETVEWLDWKRLPLFSRFDDAASLIQLGDQLLEEATQQTTAADYLRQFLPQLATELSCQWCTLIERTPEWETIFEFGRNSAASFPGTLCNEALDRDAAGLGADEKKNDWFYIAAPLGDVRPSTVLLVGGRDLTTETLSNSVVAARVLGYALSIVEKREKNVKRIGRLETTLHIASSFSSARDTQSLLELIAKEATRLLESERSSIFIWDQEHKQVVACPALGVEGNTLRLPDDVGIVGEVIHSGKTVTVDDAYNDDRFDPSVDKSSGFRTRNLLCVPLRNNAGELIGAFEVMNKNGGKSDFDADDAQSLEELGVQAATALENTRELEQLSRSRDQLTEQAKQKVQIIGKSSAIAALRSTIERLASTDLPVLILGESGTGKEVVSQSLHYQGPRANTPFIAVNCAALTETLLESELFGHEKGAFTDAHETRIGKFELAEGGTLFLDEIGDMSLGGQAKLLRVLEQKVITRVGGSESIPINVRVVAATNAKLADAVRDKKFREDLFYRLSVVTLELPPLRERPEDVILLAEFFLTQFCGQANRRVLKMSAEAKKRLQAHLWPGNVRELRNLMERVAFLCAGDRVEVEDLAFILSPSRDSVVDMSSDLSLKEATRRFQQEYIRRTIKRVGGNMSETAKCLGLHRSNLYRKMGQLEMQEASEMSEEDDE
>NZ_CP036277.1|WP_145114749.1|7316876_7318298_+|IS110-family-transposase
MPRPAPLEPLPQNGPAGNAGSQRNVRRRRRVRLATTRVGCHCRLARQCAFSVFSLTELPSQWVGPDAIRAERSEQEVAGKTAIEGSVTDGFYLFVAALLGKPTVKLCRKPPSDRLSWNKFVHNLFHEISPPEAMMLYVGLDVHVKHITICVLNKHGKLLQRCQLPCLDDVIKFLMNLQGRCEVCFEASTGYGIYFEALSKIASRVAVAHPGLLKLIFRSKQKNDRADAEKLAKLLFLDEVPTVHVPTADVRAWRELITFRGKLIQKRTRAKNGIRSLLRSVGCRVPKEFGLWTIRGMEWLKQKDLKQPMQNLKRDMLVEEIETLTRQTRLVETELARYSKENIAVQQLQSIPGIGLRTAEAFVAFVDDPHRFANSKKVGAYFGLIPIQDQSGSTNRLGHITREGCAEVRHLVTEAVWQGIRYSPTIKAYYERIHRQEKDRKKIAIVATSHYLVRVMWSMLKNGTLWKERSLAV
>NZ_CP036277.1|WP_145114751.1|7319005_7319566_+|hypothetical-protein
MEIMLTMLLSFATAVSPTVVNADFEQKDARTGLPTGWAFTSLPDRQHLVNYRTTQVAAEQGQTRALSITVASDHPEHKVAYNIHQDLKGLTPGKSYRVSARVCTRGLKTLPMIVVQCIDASGSRFLGFARSQQRELPGDLDHWEQIQTDIVIPEGTSTVRLRIGIPSAGNAGGTAIIDDVDMVEMN
>NZ_CP036277.1|WP_145105250.1|7319841_7321230_-|transposase
MQVLTKLHSCQERTLGMPHQDTEHLRINIQSMKAIFDRLIPCETSSLVRHGNASLDPGWLAAVAILCMGWTAKGTLGERVKTAYTVAGELFQVSTTVTRQGLMKALANYGQPLVDLVIQHLSSKLGQWKGYRTTAGKVTLAVDATKFSAPRSAANQREFAPGIHHRRSAKYRKKADESKALTVQLLTTVLWHLGSGLPFRWCIQGAAGSERIAAREMLESLPENVRLVGDAQYTGAPLWSAIMESGHSFLFRVGSNVTLLKSLGQLKIRDGFVYYWPDSMQRRDQSPLVLRLFQIHNGRNKIYLVSNELEMTDACACKLYRQRWGIEVFFRSVKQSCERSKLCCQTPVNVITELNWTLIGIWVALFVGKDMLHKQGTNLKKLSPIKVIRVFSQAVTIIACHAQQWAPLTDLLSQSVLAEEKRPNNRKASRGHPCKKRKRQCGKPTIIQATTDQKKLAKIYLE
>NZ_CP036277.1|WP_145114753.1|7321401_7322136_-|RraA-family-protein
MSTTEGLSNEALEELAKYDTPTVCNVIELWNIRPRNVGFMNDTIKACFPKMPPMVGYALTSTFRSMAPPRSGDVYAGLDNQVAAFESLPGAPVVVYQDMDEPTASATFGEVMCSTYKAYGAKGIITSGAGRDLDQVEALDFPAFTNGAICAHGYCHTLAVNVPVTVGGIPIYPGDLLHGDLNGVTTIPHEIASEVADACKDLMKAEDIVLDYLKTGNLTPEGLGEARKELAAEVGKLGKRLRGE
>NZ_CP036277.1|WP_145114755.1|7322154_7323441_-|DUF2088-domain-containing-protein
MNMTLPQAYRIRQNFPSTRVEDIGEAVRATLTQLNLEKVIKPGDSVAVPVGSRGIANIALIIRSTVDYLKSLGAEPFIVPAMGSHGGGTAEGQAHVIASYGVTEEAMGVGIRSSMETVIVDQTPHGIPVHFDKNAYAADHVLVCGRVKPHTRFVGDIESGLHKMMLIGLGKHEGAKIYHRAIEDHSFEEIIKAVAASVLKKCDVIGGLAIVENSYDETGMIEAVAPENFYEREKELLEIARQWLPRLPFPKIDLLIVDRIGKNISGSGMDACVIGRKFNDHAATERDVVSCKRIMVRGLTEETHGNACGIGLAEFTNERTVAGVDWKSTRINTITGSHPTAGMVPLVYPNDREAIEAALQTIGLVEPETSGIVQIYDTLELSEVVVSETYLEEINSRDDLEIISGPFDFPFDAEGNLASVFEKPQHST
>NZ_CP036277.1|WP_145114757.1|7323753_7325448_+|flagellar-hook-basal-body-complex-protein
MRLISKPISRSKLEVEPCCCKEADMRKNFERIIFAVSVCVLGGVLFIQGILYLKDLGFADETDPVTLSLTQNQSAAAAAELECAPAEPAPLDSLPGIELALAEANEGTELEAEATEDPALAGPRLTLPESGQGKILANPETARPALPLLPDLDSKLHQTPGPLMPPLNAEPLADSPKQGNEKSDALIRSIIKEHLPHASAEEHQIWFEELRGVPPKVANDMLAIRKLLQPKTALRMPTDQWEKLNPTLELAPPQPQVISSTNNRGSDQGGFIGFSSQADRDELLHRLRPTVDALRMSRDVIVNNIANAGTIGFKRLNVEFEALPYEYIETPASEKSDSAPPIAVGMGSQVLQTRLSQAPGELIKTGRKLDVAIEGQGFLQVALEDKTLFTRAGRLMIDDKHRLCLRGSQQNFPLVPEILISESAHSVQIRENGSVVAILTGEEAADKEQQLGSLKLACFADASELFPRESCLFAATTRSGAPRVLTPGQQGAGLLIAGTLEASNVSIAEELEALASIKQRVDALQTIYQLDTLKPVQADLGPPSDRIARPEGQRLPRGNRPIIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP036277_2	2.13\|6065887\|36\|NZ_CP036277\|PILER-CR,CRISPRCasFinder,CRT	6065887-6065922	36	NZ_CP036277.1	7966528-7966563	1.0
NZ_CP036277_2	2.17\|6066175\|37\|NZ_CP036277\|PILER-CR,CRISPRCasFinder,CRT	6066175-6066211	37	NZ_CP036277.1	229788-229824	1.0
NZ_CP036277_2	2.17\|6066175\|37\|NZ_CP036277\|PILER-CR,CRISPRCasFinder,CRT	6066175-6066211	37	NZ_CP036277.1	6051518-6051554	1.0

1. spacer 2.13|6065887|36|NZ_CP036277|PILER-CR,CRISPRCasFinder,CRT matches to position: 7966528-7966563, mismatch: 0, identity: 1.0

ggccccatgggggggacggggcctgaccgcagtgaa	CRISPR spacer
ggccccatgggggggacggggcctgaccgcagtgaa	Protospacer
************************************

2. spacer 2.17|6066175|37|NZ_CP036277|PILER-CR,CRISPRCasFinder,CRT matches to position: 229788-229824, mismatch: 0, identity: 1.0

ttgtttggttttcagacaagctttcttcaaatcctca	CRISPR spacer
ttgtttggttttcagacaagctttcttcaaatcctca	Protospacer
*************************************

3. spacer 2.17|6066175|37|NZ_CP036277|PILER-CR,CRISPRCasFinder,CRT matches to position: 6051518-6051554, mismatch: 0, identity: 1.0

ttgtttggttttcagacaagctttcttcaaatcctca	CRISPR spacer
ttgtttggttttcagacaagctttcttcaaatcctca	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3759254 : 3822267

Paenibacillus_phage(25.0%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145108793.1\|3759254_3760402_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-58	43.7
WP_145108796.1\|3760841_3761204_+	hypothetical protein	NA	NA	NA	NA
WP_145108799.1\|3761200_3761554_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-09	31.0
WP_145108802.1\|3761692_3763498_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.4e-31	25.4
WP_145108805.1\|3763584_3764370_-	helix-turn-helix domain-containing protein	A0A219YB42	Aeromonas_phage	8.2e-24	40.0
WP_145108808.1\|3764396_3764858_+	hypothetical protein	NA	NA	NA	NA
WP_145103124.1\|3764814_3765969_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145108811.1\|3766596_3766839_-	hypothetical protein	NA	NA	NA	NA
WP_145108814.1\|3767077_3767287_-	hypothetical protein	NA	NA	NA	NA
WP_145108817.1\|3767344_3767632_-	hypothetical protein	NA	NA	NA	NA
WP_145108820.1\|3768631_3768940_-	hypothetical protein	NA	NA	NA	NA
WP_145108823.1\|3768988_3769612_-	hypothetical protein	NA	NA	NA	NA
WP_145108826.1\|3769617_3769962_-	hypothetical protein	NA	NA	NA	NA
WP_145108829.1\|3769985_3770678_-	hypothetical protein	NA	NA	NA	NA
WP_145103124.1\|3770865_3772020_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145108832.1\|3772085_3772844_-	hypothetical protein	NA	NA	NA	NA
WP_145103124.1\|3772843_3773998_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145108835.1\|3774148_3775087_-	cadherin repeat domain-containing protein	NA	NA	NA	NA
WP_145108838.1\|3775343_3775985_-	hypothetical protein	NA	NA	NA	NA
WP_145108841.1\|3776399_3778442_+	hypothetical protein	NA	NA	NA	NA
WP_145108844.1\|3778780_3779851_-	hypothetical protein	NA	NA	NA	NA
WP_145108847.1\|3780010_3781438_-	hypothetical protein	H9YTK3	environmental_Halophage	1.0e-11	33.9
WP_145108850.1\|3781701_3782790_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0H3UYZ1	Geobacillus_virus	4.4e-68	44.7
WP_145108854.1\|3783385_3783628_+	hypothetical protein	NA	NA	NA	NA
WP_145108857.1\|3783905_3784361_+	GNAT family N-acetyltransferase	A0A1X9I6I8	Streptococcus_phage	4.6e-19	31.9
WP_145116299.1\|3784458_3784659_+	DUF2905 family protein	NA	NA	NA	NA
WP_145108860.1\|3784611_3784839_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_145108863.1\|3784835_3787295_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.8e-62	28.5
WP_145108867.1\|3787326_3788121_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_145108870.1\|3788140_3788728_-	FixH family protein	NA	NA	NA	NA
WP_145108873.1\|3788706_3790083_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_145108876.1\|3790117_3790795_-	c-type cytochrome	NA	NA	NA	NA
WP_145116301.1\|3790975_3793198_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA
WP_145108879.1\|3793694_3794819_+	hypothetical protein	NA	NA	NA	NA
WP_145108881.1\|3795000_3796440_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_145108884.1\|3796458_3799311_-	DUF1553 domain-containing protein	NA	NA	NA	NA
WP_145108887.1\|3799580_3800099_-	hypothetical protein	NA	NA	NA	NA
WP_145108891.1\|3800176_3801475_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_145116302.1\|3801568_3804316_-	DUF1549 domain-containing protein	NA	NA	NA	NA
WP_145108894.1\|3804382_3805066_-	hypothetical protein	NA	NA	NA	NA
WP_145108897.1\|3805068_3805632_-	hypothetical protein	NA	NA	NA	NA
WP_145108900.1\|3805667_3806201_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_145108903.1\|3806522_3807560_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_145108907.1\|3807855_3810063_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_145108910.1\|3810088_3811834_-	molybdopterin oxidoreductase	NA	NA	NA	NA
WP_145108912.1\|3811840_3812611_-	hypothetical protein	NA	NA	NA	NA
WP_145108915.1\|3812626_3815590_-	nitrite reductase small subunit NirD	A0A2K5B2C5	Erysipelothrix_phage	2.8e-08	25.7
WP_145108918.1\|3815656_3817036_-	MFS transporter	NA	NA	NA	NA
WP_145108921.1\|3817606_3818596_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_145108924.1\|3818800_3819625_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_145116304.1\|3819669_3820992_+	cytochrome c	NA	NA	NA	NA
WP_145108926.1\|3820992_3822267_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

4202044 : 4243126

Paenibacillus_phage(33.33%)

transposase,integrase

attL 4201371:4201385|attR 4222219:4222233

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4201371:4201385	attL	NA	NA	NA	NA
WP_145116319.1\|4202044_4202386_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_145109640.1\|4202601_4203939_-	hypothetical protein	NA	NA	NA	NA
WP_145116074.1\|4204475_4205268_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.2e-11	42.5
WP_145109643.1\|4205255_4206170_-	hypothetical protein	NA	NA	NA	NA
WP_145109646.1\|4206247_4207618_-	DUF1573 domain-containing protein	NA	NA	NA	NA
WP_145109649.1\|4208254_4208488_-\|transposase	transposase	NA	NA	NA	NA
WP_145109652.1\|4208752_4209466_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_145109655.1\|4209486_4210755_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_145109658.1\|4211132_4212029_+	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_145109661.1\|4212227_4213232_+	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_145109664.1\|4213491_4225617_+	hypothetical protein	E5ERA2	Bathycoccus_sp._RCC1105_virus	1.1e-71	20.8
4222219:4222233	attR	NA	NA	NA	NA
WP_145109667.1\|4225644_4226043_-	hypothetical protein	NA	NA	NA	NA
WP_145109670.1\|4226078_4230575_-	protein kinase	A0A2R8FF19	Brazilian_cedratvirus	1.5e-16	27.2
WP_145109673.1\|4230741_4231314_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_145109676.1\|4231520_4232285_+	hypothetical protein	NA	NA	NA	NA
WP_145109679.1\|4232341_4233145_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_145105234.1\|4233304_4234327_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_145116321.1\|4235388_4236999_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_145109682.1\|4237203_4238301_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_145109685.1\|4238371_4240291_+	sialidase	NA	NA	NA	NA
WP_145109688.1\|4240598_4241810_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_145105234.1\|4242103_4243126_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

5934109 : 6050112

101

Paenibacillus_phage(30.77%)

transposase,integrase

attL 5946957:5947016|attR 6054401:6054417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145112840.1\|5934109_5935390_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_145112842.1\|5935342_5935615_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145112844.1\|5935683_5936256_-	hypothetical protein	NA	NA	NA	NA
WP_145112845.1\|5936259_5936982_-	hypothetical protein	NA	NA	NA	NA
WP_145112847.1\|5936969_5937224_-	hypothetical protein	NA	NA	NA	NA
WP_145112849.1\|5937236_5938436_-	hypothetical protein	NA	NA	NA	NA
WP_145112851.1\|5938480_5938876_-	hypothetical protein	NA	NA	NA	NA
WP_145112853.1\|5939091_5939352_-	hypothetical protein	NA	NA	NA	NA
WP_145112855.1\|5939400_5939664_-	hypothetical protein	NA	NA	NA	NA
WP_145112857.1\|5939725_5940175_-	hypothetical protein	NA	NA	NA	NA
WP_145112859.1\|5940195_5941881_-	hypothetical protein	NA	NA	NA	NA
WP_145112861.1\|5942457_5942682_-	hypothetical protein	NA	NA	NA	NA
WP_145112863.1\|5942726_5943344_-	bifunctional DNA primase/polymerase	NA	NA	NA	NA
WP_145112865.1\|5943636_5944554_-	hypothetical protein	NA	NA	NA	NA
WP_145112867.1\|5944575_5945517_-	hypothetical protein	NA	NA	NA	NA
WP_145112869.1\|5945541_5945973_-	hypothetical protein	NA	NA	NA	NA
WP_145112871.1\|5945972_5947022_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.6e-65	42.2
5946957:5947016	attL	NA	NA	NA	NA
WP_145109882.1\|5947034_5947397_+	hypothetical protein	NA	NA	NA	NA
5946957:5947016	attL	NA	NA	NA	NA
WP_145108799.1\|5947393_5947747_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-09	31.0
WP_145109885.1\|5947853_5949692_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	8.6e-32	25.5
WP_145112873.1\|5949727_5949910_-	hypothetical protein	NA	NA	NA	NA
WP_145112875.1\|5950060_5950378_-	hypothetical protein	NA	NA	NA	NA
WP_145112877.1\|5950855_5951587_+	hypothetical protein	NA	NA	NA	NA
WP_145112879.1\|5951593_5951923_-	DUF2958 domain-containing protein	NA	NA	NA	NA
WP_145112881.1\|5952023_5952836_-	hypothetical protein	NA	NA	NA	NA
WP_145112883.1\|5952936_5953395_-	hypothetical protein	NA	NA	NA	NA
WP_145112885.1\|5953631_5954240_+	hypothetical protein	NA	NA	NA	NA
WP_145112887.1\|5954387_5954624_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145112889.1\|5954838_5956248_+	hypothetical protein	NA	NA	NA	NA
WP_145112891.1\|5956895_5957717_+	hypothetical protein	NA	NA	NA	NA
WP_145112893.1\|5957736_5960841_+	hypothetical protein	NA	NA	NA	NA
WP_145116427.1\|5960855_5961857_+	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_145112895.1\|5961970_5962741_+	glycosyltransferase	NA	NA	NA	NA
WP_145112897.1\|5962840_5964448_+	hypothetical protein	NA	NA	NA	NA
WP_145112899.1\|5964458_5965319_+	DUF1583 domain-containing protein	NA	NA	NA	NA
WP_145112901.1\|5966608_5967814_+	hypothetical protein	NA	NA	NA	NA
WP_145112903.1\|5967858_5968998_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_145112904.1\|5969054_5969546_+	hypothetical protein	NA	NA	NA	NA
WP_145112906.1\|5969941_5970814_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_145103124.1\|5970853_5972008_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145112908.1\|5972109_5972490_-	hypothetical protein	NA	NA	NA	NA
WP_145112910.1\|5973609_5974458_+	response regulator	NA	NA	NA	NA
WP_145103124.1\|5974559_5975714_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145112912.1\|5975753_5976359_+	hypothetical protein	NA	NA	NA	NA
WP_145112914.1\|5976565_5976895_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_145112916.1\|5976861_5977251_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_145112918.1\|5978321_5978642_+	hypothetical protein	NA	NA	NA	NA
WP_145109885.1\|5978677_5980516_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	8.6e-32	25.5
WP_145108799.1\|5980622_5980976_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-09	31.0
WP_145109882.1\|5980972_5981335_-	hypothetical protein	NA	NA	NA	NA
WP_145112920.1\|5981401_5983684_+	ATP-binding protein	NA	NA	NA	NA
WP_145112922.1\|5983765_5983972_-	hypothetical protein	NA	NA	NA	NA
WP_145112924.1\|5984576_5985620_-	hypothetical protein	NA	NA	NA	NA
5981354:5984129	attR	NA	NA	NA	NA
WP_145112926.1\|5985600_5986800_-	hypothetical protein	A0A1B1IUD7	uncultured_Mediterranean_phage	8.7e-09	35.1
5981354:5984129	attR	NA	NA	NA	NA
WP_145112928.1\|5986882_5987398_+	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_145112931.1\|5987867_5988551_+	hypothetical protein	NA	NA	NA	NA
WP_145112933.1\|5988572_5988806_-	hypothetical protein	NA	NA	NA	NA
WP_145112935.1\|5989046_5990582_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_145112937.1\|5990717_5991332_-	adenylyl-sulfate kinase	A0A2P1ELS9	Moumouvirus	1.5e-25	44.2
WP_145112939.1\|5991700_5992579_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_145112941.1\|5992620_5993265_+	hypothetical protein	NA	NA	NA	NA
WP_145112943.1\|5993201_5994110_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_145112945.1\|5994116_5994869_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.6e-24	42.3
WP_145112948.1\|5995111_5995312_-	carbon storage regulator	NA	NA	NA	NA
WP_145112950.1\|5995620_5996136_-	nucleoside deaminase	NA	NA	NA	NA
WP_145112952.1\|5996345_5997761_+	hypothetical protein	NA	NA	NA	NA
WP_145112954.1\|5997918_5999211_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_145116429.1\|5999641_6001162_+	hypothetical protein	NA	NA	NA	NA
WP_145116074.1\|6002284_6003077_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.2e-11	42.5
WP_145105234.1\|6003286_6004309_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_145112956.1\|6004686_6006525_-	DUF116 domain-containing protein	NA	NA	NA	NA
WP_145112958.1\|6006608_6008465_-	squalene--hopene cyclase	NA	NA	NA	NA
WP_145112960.1\|6008509_6009544_-	ferredoxin family protein	NA	NA	NA	NA
WP_145112962.1\|6009595_6010048_-	glycine cleavage system protein H	NA	NA	NA	NA
WP_145112964.1\|6010621_6011782_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_145112966.1\|6011941_6012895_+	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_145112968.1\|6012949_6013366_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_145112970.1\|6013495_6014653_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_145112972.1\|6015019_6015580_+	hypothetical protein	NA	NA	NA	NA
WP_145116431.1\|6015605_6016424_-	DUF817 family protein	NA	NA	NA	NA
WP_145112974.1\|6017504_6019622_-	hypothetical protein	NA	NA	NA	NA
WP_145112976.1\|6019888_6021322_-	sulfatase-like hydrolase/transferase	A0A1V0SA98	Catovirus	1.6e-12	23.6
WP_145112979.1\|6021468_6022602_+	hypothetical protein	NA	NA	NA	NA
WP_145112981.1\|6022668_6023652_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_145112983.1\|6024009_6027462_+	pyruvate carboxylase	NA	NA	NA	NA
WP_145112985.1\|6027717_6028005_+	hypothetical protein	NA	NA	NA	NA
WP_145112987.1\|6028025_6028724_-	hypothetical protein	NA	NA	NA	NA
WP_145112989.1\|6028839_6029187_-	HIT domain-containing protein	NA	NA	NA	NA
WP_145112991.1\|6029400_6031086_-	transmembrane Mn(2+) transporter	NA	NA	NA	NA
WP_145112992.1\|6031183_6032692_-	anthranilate synthase component I	NA	NA	NA	NA
WP_145112994.1\|6033136_6034201_+	protein arginine kinase	NA	NA	NA	NA
WP_145112996.1\|6034408_6038164_+	DUF1080 domain-containing protein	NA	NA	NA	NA
WP_145116433.1\|6038224_6039826_-	AarF/ABC1/UbiB kinase family protein	A9YVW0	Ostreococcus_tauri_virus	2.8e-39	29.6
WP_145112998.1\|6040081_6041350_+	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_145113000.1\|6041365_6042661_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_145113002.1\|6042687_6043746_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_145113004.1\|6044145_6045069_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_145113006.1\|6045110_6045551_-	hypothetical protein	NA	NA	NA	NA
WP_145113008.1\|6046081_6047602_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_145113010.1\|6047710_6048964_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_145102956.1\|6048978_6050112_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
6054401:6054417	attR	NA	NA	NA	NA

DBSCAN-SWA_4

6087791 : 6111700

Burkholderia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145116442.1\|6087791_6088148_+\|transposase	transposase	NA	NA	NA	NA
WP_145113062.1\|6088383_6090012_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.8e-12	24.2
WP_145113063.1\|6090881_6092225_+	recombinase family protein	A0A0K2CNN5	Brevibacillus_phage	1.8e-23	27.5
WP_145113066.1\|6092307_6093372_+	hypothetical protein	NA	NA	NA	NA
WP_145113068.1\|6094519_6094837_+\|transposase	transposase	NA	NA	NA	NA
WP_145113069.1\|6094914_6096222_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_145113071.1\|6096727_6097795_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_145113073.1\|6097856_6099653_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.3e-19	29.8
WP_145113075.1\|6099680_6100814_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_145113077.1\|6100824_6101931_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_145113079.1\|6102028_6103039_-\|transposase	transposase	NA	NA	NA	NA
WP_145113081.1\|6103104_6104082_+\|transposase	transposase	NA	NA	NA	NA
WP_145113083.1\|6104109_6104583_+\|transposase	transposase	NA	NA	NA	NA
WP_145113084.1\|6104598_6105120_-	hypothetical protein	NA	NA	NA	NA
WP_145113086.1\|6105250_6105673_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145113088.1\|6105669_6106365_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_145113090.1\|6106740_6107139_+	OsmC family protein	NA	NA	NA	NA
WP_145116443.1\|6107434_6107707_-	hypothetical protein	NA	NA	NA	NA
WP_145113093.1\|6107780_6108641_+\|transposase	transposase	NA	NA	NA	NA
WP_145113095.1\|6108760_6109297_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_145113097.1\|6109344_6109641_+	hypothetical protein	NA	NA	NA	NA
WP_145113099.1\|6109846_6110443_-	hypothetical protein	NA	NA	NA	NA
WP_145108793.1\|6110553_6111700_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-58	43.7

DBSCAN-SWA_5

6120133 : 6169291

Staphylococcus_phage(12.5%)

transposase,integrase

attL 6146261:6146320|attR 6164160:6164266

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145113093.1\|6120133_6120994_-\|transposase	transposase	NA	NA	NA	NA
WP_145113118.1\|6122851_6123271_-	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	1.3e-20	43.2
WP_145113120.1\|6123300_6123564_-	hypothetical protein	NA	NA	NA	NA
WP_145113122.1\|6123569_6124808_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_145113124.1\|6124815_6125262_-	arsenate reductase ArsC	NA	NA	NA	NA
WP_145113126.1\|6125346_6125736_-	hypothetical protein	NA	NA	NA	NA
WP_145113128.1\|6125739_6125919_-	hypothetical protein	NA	NA	NA	NA
WP_145113130.1\|6125973_6126294_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_145116447.1\|6126494_6127673_-	Mercuric transport protein MerT	NA	NA	NA	NA
WP_145113132.1\|6127864_6128278_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_145113134.1\|6128339_6128696_-	hypothetical protein	NA	NA	NA	NA
WP_145113137.1\|6128669_6129305_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_145113138.1\|6129301_6129775_-	arsenate reductase ArsC	NA	NA	NA	NA
WP_145113140.1\|6131303_6132164_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.0e-60	45.6
WP_145113142.1\|6132456_6133767_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_145113144.1\|6133844_6134162_-\|transposase	transposase	NA	NA	NA	NA
WP_145116449.1\|6134246_6134738_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_145113146.1\|6135158_6135755_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_145113148.1\|6135925_6137362_-	DUF2064 domain-containing protein	NA	NA	NA	NA
WP_145113150.1\|6137379_6138960_-	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.3e-39	27.4
WP_145116450.1\|6139057_6139819_-	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_145113152.1\|6139999_6140896_-	DUF547 domain-containing protein	NA	NA	NA	NA
WP_145113154.1\|6140973_6142692_-	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_145116452.1\|6143226_6143949_-	glycosyltransferase	NA	NA	NA	NA
WP_145113156.1\|6144261_6144849_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_145113157.1\|6144845_6145124_+	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_145113093.1\|6145447_6146308_-\|transposase	transposase	NA	NA	NA	NA
6146261:6146320	attL	NA	NA	NA	NA
WP_145116454.1\|6146373_6147167_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.7e-11	42.5
WP_145113159.1\|6147304_6147751_+	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_145113161.1\|6147783_6148590_-	sterol desaturase family protein	NA	NA	NA	NA
WP_145113163.1\|6148623_6148977_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_145113166.1\|6148998_6151071_-	recombinase family protein	NA	NA	NA	NA
WP_145113168.1\|6151089_6151377_-	hypothetical protein	NA	NA	NA	NA
WP_145113170.1\|6151403_6151856_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145116456.1\|6152063_6152351_-	hypothetical protein	NA	NA	NA	NA
WP_145116457.1\|6152320_6152644_+\|transposase	transposase	NA	NA	NA	NA
WP_145116459.1\|6152812_6154990_-	GAF domain-containing protein	NA	NA	NA	NA
WP_145113171.1\|6155433_6155712_+	ferredoxin family protein	NA	NA	NA	NA
WP_145113173.1\|6155755_6156088_+	iron-sulfur cluster assembly accessory protein	A0A1B1IT29	uncultured_Mediterranean_phage	2.7e-21	50.0
WP_145113175.1\|6156137_6157583_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_145113177.1\|6157607_6158375_+	Fe-S cluster assembly ATPase SufC	A0A1M7XV31	Cedratvirus	6.0e-11	27.7
WP_145113179.1\|6158487_6159810_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_145116461.1\|6159829_6161083_+	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	4.3e-99	42.4
WP_145113181.1\|6161076_6161553_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_145113183.1\|6161595_6161883_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_145113185.1\|6161879_6162215_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_145116462.1\|6162310_6162616_+	hypothetical protein	NA	NA	NA	NA
WP_145113187.1\|6162699_6163323_+	TenA family protein	NA	NA	NA	NA
WP_145113189.1\|6163319_6164105_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_145113144.1\|6164283_6164601_+\|transposase	transposase	NA	NA	NA	NA
6164160:6164266	attR	NA	NA	NA	NA
WP_145113142.1\|6164678_6165989_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_145113190.1\|6168568_6169291_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.6e-45	54.4

DBSCAN-SWA_6

6902453 : 7024128

Leptospira_phage(19.05%)

transposase,coat,integrase,protease,tRNA

attL 6956010:6956069|attR 6976480:6979255

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145114201.1\|6902453_6905885_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_145114203.1\|6905960_6908054_+	CocE/NonD family hydrolase	NA	NA	NA	NA
WP_145114205.1\|6908140_6908857_+	SGNH/GDSL hydrolase family protein	Q37959	Lactococcus_phage	9.8e-08	28.3
WP_145114207.1\|6909474_6910263_+	hypothetical protein	NA	NA	NA	NA
WP_145114209.1\|6910405_6911326_+	hypothetical protein	NA	NA	NA	NA
WP_145114211.1\|6911342_6912758_+	hypothetical protein	NA	NA	NA	NA
WP_145114213.1\|6912793_6913711_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_145114214.1\|6913745_6914753_-	hypothetical protein	NA	NA	NA	NA
WP_145108796.1\|6914765_6915128_+	hypothetical protein	NA	NA	NA	NA
WP_145108799.1\|6915124_6915478_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-09	31.0
WP_145108802.1\|6915616_6917422_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.4e-31	25.4
WP_145114216.1\|6917640_6919233_-	hypothetical protein	NA	NA	NA	NA
WP_145114218.1\|6919265_6921332_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7F1	Microcystis_virus	4.8e-23	35.4
WP_145109885.1\|6921523_6923362_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	8.6e-32	25.5
WP_145108799.1\|6923468_6923822_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-09	31.0
WP_145109882.1\|6923818_6924181_-	hypothetical protein	NA	NA	NA	NA
WP_145114220.1\|6925042_6925639_+	hypothetical protein	NA	NA	NA	NA
WP_145103124.1\|6926709_6927864_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145114222.1\|6928218_6928485_-	hypothetical protein	NA	NA	NA	NA
WP_145114224.1\|6929100_6929772_+	hypothetical protein	NA	NA	NA	NA
WP_145114226.1\|6929790_6930705_+	patatin-like phospholipase family protein	A0A1V0SKV5	Klosneuvirus	1.5e-16	24.9
WP_145114228.1\|6930701_6932027_+	ATP-binding protein	NA	NA	NA	NA
WP_145114229.1\|6932096_6932621_-	hypothetical protein	NA	NA	NA	NA
WP_145114231.1\|6932846_6934010_-	hypothetical protein	NA	NA	NA	NA
WP_145103124.1\|6934566_6935721_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145114233.1\|6935753_6937241_-\|tRNA	lysine--tRNA ligase	A0A1V0SFI4	Hokovirus	3.3e-74	36.1
WP_145114235.1\|6937294_6938764_-	hypothetical protein	NA	NA	NA	NA
WP_145114237.1\|6940106_6941834_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_145114239.1\|6942336_6943197_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	1.3e-09	25.3
WP_145114241.1\|6943024_6944032_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_145114243.1\|6944670_6946110_+	hypothetical protein	NA	NA	NA	NA
WP_145114245.1\|6946735_6946954_+	hypothetical protein	NA	NA	NA	NA
WP_145114247.1\|6946950_6947298_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_145114249.1\|6947294_6948449_-	DNA primase	NA	NA	NA	NA
WP_145114251.1\|6948538_6949435_+	hypothetical protein	NA	NA	NA	NA
WP_145114253.1\|6949764_6951777_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_145114255.1\|6952379_6952697_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_145114257.1\|6952758_6953706_+	N-6 DNA methylase	NA	NA	NA	NA
WP_145114259.1\|6953785_6954310_+	hypothetical protein	NA	NA	NA	NA
WP_145114261.1\|6954329_6954566_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145114263.1\|6954950_6955220_-	hypothetical protein	NA	NA	NA	NA
WP_145114265.1\|6955602_6956022_-	hypothetical protein	NA	NA	NA	NA
6956010:6956069	attL	NA	NA	NA	NA
WP_145108796.1\|6956088_6956451_+	hypothetical protein	NA	NA	NA	NA
WP_145108799.1\|6956447_6956801_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-09	31.0
WP_145108802.1\|6956939_6958745_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.4e-31	25.4
WP_145114268.1\|6959043_6959910_-	hypothetical protein	NA	NA	NA	NA
WP_145108793.1\|6960422_6961569_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-58	43.7
WP_145114270.1\|6961805_6962645_+	hypothetical protein	NA	NA	NA	NA
WP_145114272.1\|6962641_6964402_+	DUF87 domain-containing protein	NA	NA	NA	NA
WP_145114274.1\|6964341_6964764_-	hypothetical protein	NA	NA	NA	NA
WP_145103124.1\|6964942_6966097_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.8e-70	40.6
WP_145114276.1\|6966499_6967156_+	hypothetical protein	NA	NA	NA	NA
WP_145114278.1\|6967143_6968580_+	hypothetical protein	NA	NA	NA	NA
WP_145114280.1\|6968677_6970474_+	hypothetical protein	NA	NA	NA	NA
WP_145114282.1\|6971788_6972661_+	hypothetical protein	NA	NA	NA	NA
WP_145114284.1\|6972657_6973080_+	hypothetical protein	NA	NA	NA	NA
WP_145114286.1\|6973299_6973512_+	hypothetical protein	NA	NA	NA	NA
WP_145114288.1\|6974215_6974491_+	hypothetical protein	NA	NA	NA	NA
WP_145114290.1\|6974589_6974805_+	topoisomerase II	NA	NA	NA	NA
WP_145114292.1\|6974824_6976456_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_145108796.1\|6976558_6976921_+	hypothetical protein	NA	NA	NA	NA
WP_145108799.1\|6976917_6977271_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.3e-09	31.0
WP_145108802.1\|6977409_6979215_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.4e-31	25.4
WP_145114294.1\|6979369_6979645_-	hypothetical protein	NA	NA	NA	NA
6976480:6979255	attR	NA	NA	NA	NA
WP_145114296.1\|6979800_6981870_-	hypothetical protein	NA	NA	NA	NA
WP_145114298.1\|6981860_6982724_-	hypothetical protein	NA	NA	NA	NA
WP_145114300.1\|6982716_6983667_-	hypothetical protein	NA	NA	NA	NA
WP_145114302.1\|6983669_6984788_-	hypothetical protein	NA	NA	NA	NA
WP_145114304.1\|6984809_6986138_-	hypothetical protein	NA	NA	NA	NA
WP_145116537.1\|6986861_6987140_-\|coat	spore coat protein	NA	NA	NA	NA
WP_145114306.1\|6987746_6988037_-	hypothetical protein	NA	NA	NA	NA
WP_145114308.1\|6988362_6989295_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_145114310.1\|6989458_6991702_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	5.8e-22	27.7
WP_145114312.1\|6991698_6992832_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_145116538.1\|6994750_6995344_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_145114314.1\|6995835_6996672_+	OmpA family protein	NA	NA	NA	NA
WP_145114316.1\|6996760_6998362_-	hypothetical protein	NA	NA	NA	NA
WP_145114317.1\|6998382_6999003_-	NAAT family transporter	NA	NA	NA	NA
WP_145116540.1\|6999039_7000398_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_145114319.1\|7000533_7001553_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_145114321.1\|7001567_7002809_-	DUF2088 domain-containing protein	NA	NA	NA	NA
WP_145114324.1\|7003038_7003626_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_145114326.1\|7003739_7004294_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_145114328.1\|7004738_7006265_+	hypothetical protein	NA	NA	NA	NA
WP_145116541.1\|7006485_7007544_+	hypothetical protein	NA	NA	NA	NA
WP_145114330.1\|7007593_7008406_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_145114332.1\|7008679_7010056_-	hypothetical protein	NA	NA	NA	NA
WP_145114334.1\|7010434_7011256_+	TIM barrel protein	NA	NA	NA	NA
WP_145116543.1\|7011755_7012064_+	histone	NA	NA	NA	NA
WP_145114336.1\|7012315_7014217_+	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_145114338.1\|7014450_7015806_+	GTPase HflX	NA	NA	NA	NA
WP_145114340.1\|7016036_7018223_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_145114342.1\|7018271_7019279_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	1.6e-11	31.3
WP_145114344.1\|7019435_7021223_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA
WP_145114346.1\|7021509_7021827_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_145114348.1\|7021916_7022726_-	hypothetical protein	NA	NA	NA	NA
WP_145114350.1\|7022810_7023422_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	6.1e-51	54.2
WP_145114352.1\|7023495_7024128_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A2D2W3D8	Mycobacterium_phage	5.6e-07	30.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP036277

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection