CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	3 crisprs	csa3,WYL,DEDDh,cas3,DinG	1	0	7	0
NZ_CP031197	Staphylococcus saprophyticus strain 1A plasmid unnamed1	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031196_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031196_1

194354-195015

Orphan

Consensus_repeat	Method
AGTGAGTCNTTAAGNGANAG	CRT

8 spacers

The CRISPR arrays of NZ_CP031196_1

>merge|NZ_CP031196|1|194354-195015|CRT
AGTGAGTCCTTGAGTGAAAGCGGATCATTGAGTGAAAGTGAGTCATTAAGCACGAGTGAATCACTAAGTGAGAGCGAGTCGTTGAGTGCCAGTGAATCATTGAGCGATAGCGAGTCATTAAGTGAGAGTGAATCATTGAGCACAAGTGAATCATTAAGCACGAGTGAGTCGTTAAGTGAAAGCGAATCGTTAAGCGAGAGTGAGTCGTTAAGCGAGAGTGAATCATTGAGTGCCAGCGAGTCATTGAGTGAGAGTGAATCATTGAGTGAGAGCGAGTCATTGAGTGAGAGTGAGTCGTTAAGTGAAAGTGAATCACTAAGTGAAAGCGAGTCATTGAGTGCCAGTGAATCTTTAAGTAAAAGTGGATTATTGAGTACCAGTGAATCGTTGAGCGATAGCGAATCATTAAGCGAGTCTGAGTCATTAAGTGAGAGTGAATCGTTAAGTACGAGTGAGTCATTAAGCGAAAGCGAATCAATAAGTGAAAGCGAATCAATAAGTGAAAGCGAATCGTTAAGTGAGTCATTAAGCGAGAGTGCGTCATTAAGCGAATCTGAGTCGTTAAGTGCCAGTGAATCAATAAGTGAAAGCGAATCATTAAGCGCAAGTGAGTCATTAAGTGAGAGTGAGTCACTAAGTGCAAGTGGGTCATTAAGCGAAAG

>NZ_CP031196|1|1|194354-195015|CRT
AGTGAGTCCTTGAGTGAAAG	CGGATCATTGAGTGAAAGTGAGTCATTAAGCACGAGTGAATCACTAAGTGAGAGCGAGTCGTTGAGTGCCAGTGAATCATTGAGCGAT
AGCGAGTCATTAAGTGAGAG	TGAATCATTGAGCACAAGTGAATCATTAAGCACGAGTGAGTCGTTAAGTGAAAGCGAATCGTTAAGCGAG
AGTGAGTCGTTAAGCGAGAG	TGAATCATTGAGTGCCAGCGAGTCATTGAGTGAGAGTGAATCATTGAGTGAGAGCGAGTCATTGAGTGAG
AGTGAGTCGTTAAGTGAAAG	TGAATCACTAAGTGAAAGCGAGTCATTGAGTGCCAGTGAATCTTTAAGTAAAAGTGGATTATTGAGTACC
AGTGAATCGTTGAGCGATAG	CGAATCATTAAGCGAGTCTGAGTCATTAAGTGAGAGTGAATCGTTAAGTACG
AGTGAGTCATTAAGCGAAAG	CGAATCAATAAGTGAAAGCGAATCAATAAGTGAAAGCGAATCGTTA
AGTGAGTCATTAAGCGAGAG	TGCGTCATTAAGCGAATCTGAGTCGTTAAGTGCCAGTGAATCAATAAGTGAA
AGCGAATCATTAAGCGCAAG	TGAGTCATTAAGTGAGAGTGAGTCACTAAGTGCA
AGTGGGTCATTAAGCGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031196.1\|WP_002482073.1\|181420_182371_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|234663
NZ_CP031196.1\|WP_037537447.1\|184539_185106_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP031196.1\|WP_119649715.1\|206375_207302_-\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319934
NZ_CP031196.1\|WP_037537469.1\|205092_206088_+\|choloylglycine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238303
NZ_CP031196.1\|WP_145437350.1\|185245_185974_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP031196.1\|WP_145437352.1\|204413_204950_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|379137
NZ_CP031196.1\|WP_002482076.1\|183566_183698_-\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP031196.1\|WP_041079887.1\|202566_204417_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_CP031196.1\|WP_002482089.1\|202048_202366_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225209
NZ_CP031196.1\|WP_115343668.1\|195429_196182_-\|amino-acid-transporter	unknown	unknown	unknown
NZ_CP031196.1\|WP_115338299.1\|180263_180380_+\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|182112
NZ_CP031196.1\|WP_002482085.1\|197468_198902_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274413
NZ_CP031196.1\|WP_041080153.1\|185970_187065_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP031196.1\|WP_069821665.1\|183972_184473_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031196.1\|WP_002482074.1\|182658_182880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031196.1\|WP_041080157.1\|183026_183497_+\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|235497
NZ_CP031196.1\|WP_011302140.1\|201003_201927_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP031196.1\|WP_061050442.1\|198924_199377_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP031196.1\|WP_115340426.1\|180582_181374_+\|arginase-family-protein	unknown	unknown	gnl\|CDD\|212523
NZ_CP031196.1\|WP_048787496.1\|199650_200277_+\|DUF4064-domain-containing-protein	unknown	unknown	gnl\|CDD\|372544

Protein	Function_ID	Function_description	E-value
NZ_CP031196.1\|WP_002482073.1\|181420_182371_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|234663	PRK00142, PRK00142, rhodanese-related sulfurtransferase.	0
NZ_CP031196.1\|WP_037537447.1\|184539_185106_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.24485e-13
NZ_CP031196.1\|WP_119649715.1\|206375_207302_-\|ring-cleaving-dioxygenase	gnl\|CDD\|319934	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	4.21927e-43
NZ_CP031196.1\|WP_037537469.1\|205092_206088_+\|choloylglycine-hydrolase-family-protein	gnl\|CDD\|238303	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which PVA belongs. This nucleophilic cysteine is exposed by post-translational prossessing of the PVA precursor. PVA forms a homotetramer.	8.8357e-137
NZ_CP031196.1\|WP_145437350.1\|185245_185974_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.63993e-76
NZ_CP031196.1\|WP_145437352.1\|204413_204950_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|379137	pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.	2.54953e-58
NZ_CP031196.1\|WP_002482076.1\|183566_183698_-\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	5.77277e-07
NZ_CP031196.1\|WP_041079887.1\|202566_204417_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP031196.1\|WP_002482089.1\|202048_202366_-\|hypothetical-protein	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	3.14761e-07
NZ_CP031196.1\|WP_011302140.1\|201003_201927_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.47685e-37
NZ_CP031196.1\|WP_115338299.1\|180263_180380_+\|family-1-glycosylhydrolase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	2.23305e-09
NZ_CP031196.1\|WP_002482085.1\|197468_198902_+\|ABC-transporter-permease	gnl\|CDD\|274413	TIGR03061, hypothetical_protein_lp_1332, YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.	1.12051e-56
NZ_CP031196.1\|WP_041080153.1\|185970_187065_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	4.64716e-27
NZ_CP031196.1\|WP_041080157.1\|183026_183497_+\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|235497	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase.	1.36659e-114
NZ_CP031196.1\|WP_061050442.1\|198924_199377_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.88275e-13
NZ_CP031196.1\|WP_115340426.1\|180582_181374_+\|arginase-family-protein	gnl\|CDD\|212523	cd09999, Arginase-like_1, Arginase-like amidino hydrolase family. This family includes arginase, also known as arginase-like amidino hydrolase family, as well as arginase-like proteins and are found in bacteria, archaea and eykaryotes, but does not include metazoan arginases. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid.	3.86292e-84
NZ_CP031196.1\|WP_048787496.1\|199650_200277_+\|DUF4064-domain-containing-protein	gnl\|CDD\|372544	pfam13273, DUF4064, Protein of unknown function (DUF4064).	6.20464e-19

>NZ_CP031196.1|WP_041080153.1|185970_187065_+|ABC-transporter-permease
MRFKAVFIRVIKELLRDKRTLALMLFAPILVLTLLYFVFDTNSETDLKIGIDDNVPQKIVNALPSDKVEIEKIKSPDSIKDTIVNSKLDSYITKNGSNLEVTYANEDPSKTGSTKQLLGSAIQQNKMQDMMKIVEKIPNNMKQKNAQQDENVKLDNHYLYGDEDSTYFDKMFPILIGFFVFLFVFLISGIGLLRERTNGTLERLLATSVKRSEIVFGYLAGYGLFAILQTLLIVFYAILILNIEVAGSIWWVLLINILIALAALAMGIFVSTFANSEFQMIQFIPIVAIPQVFFSGIIPLENIADWVSVIGYLFPLRYAGDALTNIMIKSQGFEFIWFDIGILFVFIFVFTVLNIVGLKRYRKV
>NZ_CP031196.1|WP_145437350.1|185245_185974_+|ATP-binding-cassette-domain-containing-protein
MSELVAKLTNATKYYGKKKVLDHIDIELSSGKILGLIGPSGSGKTTTIKCLMGMEKLDEGHAQIFDTEIPDRKILNEIGYMGQSDALYESLTAHENLVFFGNLIGLKGEKLKQAIATNMKLVNLEGELNKIVNTFSGGMKRRLSLAITLLANPNLIILDEPTVGIDPSLRRDIWKQLKHLTKKGKSVIVTTHVMGEAERCDYIGLIVEGRLFTMGTPQELKDKFGVDSIEEVFIKAEAEVQS
>NZ_CP031196.1|WP_037537447.1|184539_185106_-|TetR/AcrR-family-transcriptional-regulator
MNEEMMTDSRILKTKRNTRKALITLLKHKKYDDISVKDICEVAGISRGTFYLHYKDKFDLVEQYQFEITKEGSKRVQSLLQSERHLLYYHIINFWNNEAELLLLLISNNGSPDVQNQLKKTLQYNAEKNVFPYTKKSHFSEKERHYFVVFLSNAIFGIIQEWVNNGQQETPEELSAIIHKIIPDSLLG
>NZ_CP031196.1|WP_069821665.1|183972_184473_+|hypothetical-protein
MNQLVKVTLATGLALSAMVGTTSSVTSNSTFIAHGSENIDYQVNGYTTDANDFILEPSFIEAVKNNNFVINGYNITGNEQQESSMIDIYDQIIAKTGEQTASMVDFEVKKGAVSKEALIEQYGQPIEKPFESAQGFDYRYHMGDNIVQFIVEDGYVKDVQINAENE
>NZ_CP031196.1|WP_002482076.1|183566_183698_-|beta-class-phenol-soluble-modulin
MTGIVEAIGNAVNAGLAHDWATIGVSIADVLAKGVDFVLGFFK
>NZ_CP031196.1|WP_041080157.1|183026_183497_+|peptide-methionine-(S)-S-oxide-reductase
METVYLAGGCLWGVQAFVKTLPGVINTEGGRANGITDTLDGEYDGYVEVIKTEFDPQKVSVTDLMGYLFEIIDPYSVNKQGQDVGLRYRTGLYSEDEKHLKEAQQFIDGIEDHHLIATEVLPLTNYVRSAEENQDRLSRFPDDYCHLPKELVYKYK
>NZ_CP031196.1|WP_002482074.1|182658_182880_-|hypothetical-protein
MPKVEERMLEDIENKETRSESNLSSEKEMQQNAFERLGKDVVIIETLSIMNIIFAISTISLIGALIFTNKKKS
>NZ_CP031196.1|WP_002482073.1|181420_182371_-|rhodanese-related-sulfurtransferase
MDYRVLLYYKYTTIDDPELFATEHLAFCKDLELKGRILVSTEGINGTVSGTVEATDKYMEALKNDARFQGITFKVDEAEGHAFKKMHVRPRQEIVALDLEDDVNPRELTGNYLSPKEFREALLSDDTVVIDARNDYEYDLGHFRGAVRPDITRFRDLPDWIKENKEQFMDKKIVTYCTGGIRCEKFSGYLLKEGFEDVSQLEGGIATYGKDPETKGEFWDGKMYVFDERISVEVNHVDKTVVGKEWFDGTPCERYINCSNPECNKQILVSEENEARYLGACSHECAKHENNRYVKKHNISDEEKAKRLENFKELVK
>NZ_CP031196.1|WP_115340426.1|180582_181374_+|arginase-family-protein
MGAHLLNWLIPNDSNQEAFEIKVEEPDEAALELENGVYGQSQIINNVKQAQDILNQEQPDKVGTLGGNCMVSQAPFDYLNQKYGDELGIVWIDTHPDISYPKDITNEHAMVVANLLGEGDSELSKLVNAPLKTNQFLYVGLQELLDFEAENLEKLNFDYKVQGTESYNYEEIQQWIKENNFSKIAIHFDIDVLDPNEFRATYFAEPRIESFPAAAGQMSLSHLNDILKGISENNDIVGFTVAEYMPWDEINLKNTLKDLNIFH
>NZ_CP031196.1|WP_115338299.1|180263_180380_+|family-1-glycosylhydrolase
MYVNRYDNFEGTFERYRKKSFYWYQNVIKTNGNSLISK
>NZ_CP031196.1|WP_115343668.1|195429_196182_-|amino-acid-transporter
MLIKNIFTTVSSRNSAIIFYAIALYPFLYLITLILPTNFMQIGGETNSLSGLEFYYGILFAQSQFAVPLILMTYFVSYLFFEEYESGRLIFYKDISRIRLYNSKLVALFSMYIIYYVILFVSSEILYFTYIHQYDYASGAFLSNVQETNYSTILCIVGIFCITLIAICFSVMLSMKLSTGFNILSVIVLLMFMVIAPMIHGLKYLFPNGYDHAITPSDLLTKLGLMILTTLLYSVICYLVGLKMFKKLEY
>NZ_CP031196.1|WP_002482085.1|197468_198902_+|ABC-transporter-permease
MFNEFKFIFRNKMLIIALIAIAAIPLLYVALFVGSMWSPYDKTDQLKISIVNQDQSAKLNGEKVTIGDDVVDKLKDNDKFDFQEVSKKEAFNQLEKGKSVGTIIIPKDASSNATTLLDKNPKKINIETQVNPGSSYTGSQSAQKAINTVTNSIKDNIRTNYLDQLFASAKKSQSGFKDTSNALGDMSDAESQLIDGNQQVTDGLKQLAPTVGQPAQQLISGNQQVTDGLNQLQQNNDQLKAQIDQSVEQQDGVAFEGDNEKALNNVTKVNENNATEADKYGETIVPYMASVSLFVGAVSFSAIYPLRKMLTKDVTSLKQAFGKLLLYLVQGAVSALLMSSWAIFALNMSIDNIGKFILVGLLWAIAAITITTFLSLLLDRIGLFISMVLLILQLSASEGMFPIELSAQFFRWIHPFSPMSYAIQGYREAIFTNAGHFNFGFVVALLVGIIVIMMILQYLVLLWFNKRQRVPFSIEFK
>NZ_CP031196.1|WP_061050442.1|198924_199377_+|MarR-family-transcriptional-regulator
MENVDKTIEEAITKFQIVMLHLNKEIVEIVKETGLSNLLSREQIDAMRIIKNEGKVTINELAGLQNIFKTAASKRIAKLEEMGYVQRAYSDNKRIKLIMLSDEGETFLQRATAVMTEAVKDRLGNKFTAEEVHHFVEQLTHIDNAFKAHK
>NZ_CP031196.1|WP_048787496.1|199650_200277_+|DUF4064-domain-containing-protein
MKRTIERVLTWIGIVLQILGVVLMAVLIPMMGNGEVKEAFISQMMQEDSSFTYEDGNTIFSTFSGLLTTGLVLGIILLIIALIAVFLISKKAKVAGVLLIIAGVISFLGNWINAVLWLVAGIMLLVRKPKEPIYDKEEDDDVNPYIKDGSQVNERNNSFILSEEQKENEQETIKDAYSQSKDDNKTDLDNLDDLDERSKKVKEDPYKY
>NZ_CP031196.1|WP_011302140.1|201003_201927_+|AEC-family-transporter
MSEMLYILQTVLLPIFIMIFLGYILQKKFTLDLNTLAKLNIYVFVPGFIFVKFYKTHFALSLLFYIIIFFVIYMFVLFLIGKLLSMFRKTDKGETTTLTNSLMFFNSGNYGVPVNDLVFKGDPLAMSVQVIVLSLQNIFTFSYGVFAIQSLHIGKLKALLGYFKMPVLYALLLAIILNYNHIPIPEFIWTPANYVADAMIAIALLMLGAQISNIKFSLKWSKSYAYVFIRLIIGPLIALVIIKIMGIEGIIAQTLFIASAMPTSVNSSVIAQEYDNHPELAAELVFLSTLLSAITVVIVIYMSKILF
>NZ_CP031196.1|WP_002482089.1|202048_202366_-|hypothetical-protein
MFVAEVAFSTNKENEQQLYNKVKKTQSELHNVAGLKSSEVWTKSKSDDVEYVVVSKWDEKKDFQNWVARPSHVEEHKAMHKKSKNDEADKPPFQKTLRQYTVVEF
>NZ_CP031196.1|WP_041079887.1|202566_204417_+|anaerobic-ribonucleoside-triphosphate-reductase
MNKLEKNLKHLITKDPTVVNENANKDSATFSTMRDLTAGVVSKSYALDYLLPKHVAQAHEAGDIHFHDLDYHPFQPLTNCCLIDAESMLSHGFQIGNATVTSPKSIQTASAQLVQIIANVSSSQYGGCTIDRVDELLSKYAKFNEMKHRQIAEKFVHESVIDTYVDERVTQDIGDAIESLEYEINTLYTSNGQTPFVTLGFGLGTDRYSRKIQEAILSTRIKGLGKDRITAIFPKLVFSIKRGVNLNESDPNYDIKQLALECSTKRMYPDILNYDKTVELLGDFKAPMGCRSFLPAWKDKDGHYENNGRCNLGVVTLNVPRIALESKGDMEAFWKIFHQRMAIMHDALVYRIERIAQATPENAPILYQNGAFKHRLKETDDIMTLFKGQRATLSIGYIGLYEAATVFYGPHWERLSKAKAFTLDILKSMKAYQLKWTEQYDIWFSIYSTPSESLTDRFCRLDREQFGEIADITDKGYYQNSFHYDVRKDVTPFEKIDFEKDYPEYASGGYIHYCEYPKLNHNLKALEAVWDYAYDKVSYLGTNIPIDHCRKCGFDGDFKTTAKGYQCPQCGNDDPKSVDVVKRTCGYLGNPVQRPTIEGRHKEMCARVKHLKDASV
>NZ_CP031196.1|WP_145437352.1|204413_204950_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MNILKIRHGQGHIAKIEAQSFVDGEGVRCSLYVSGCPFACENCYNKVAQNFKYGGPFHEDTLEEIMAYCAPNYISGLSILGGEPFCNVDITLKCAQTFRKRFGNTKSLWVWTGFLFEYLERDSAERKTLLELIDVLVDGPFINHLYRPNLPYKGSMNQRVIDVQASLQRRRVCEYIKS
>NZ_CP031196.1|WP_037537469.1|205092_206088_+|choloylglycine-hydrolase-family-protein
MCTGFSFLSKSKQAILGRTMDFVYHLEGQPAVQPRHFYWESRVEYKGKTQYGFIGAGSDMEGFLFGDGLNEHGVGVSIQYFRGYASYATEVRKGYMNIAQNEVITWVLGYNKNIDDLIENGKQVNVVAHVLNDIAEVPPLHYHITDDTGRSVELTFQDGKIVINENPIGVLTNNPDLNWHYENLRNYTAVTPHKPEAKNVMGQSLGSLGNEGGTYGLPGGYTSPERFIKTAYLKNYLIGSEDPEYDVMDAFKLLDSVSIPKGAVLDENGDMHYTLYQTVFNLTTRTMYLKWYDTNQITELQLTEDLILKEDMTIFEPVQGFVTNKLNHTSS
>NZ_CP031196.1|WP_119649715.1|206375_207302_-|ring-cleaving-dioxygenase
MNIIGHHHISMYTKGAQINKNFYTQTLGLRLVEKSVNQDNPTMYHLFYGDEIGTPGTLLSFFEIPNLGKNRPGTNSIHRVSLLVPDESALTYFERRLNEQHITTTQMTYLNHHALLFKDMDGLEILLLANNHRNTPNAWRKNPYTDIPEAYQILGMGPVEMRLRDIQPTLHFLKNDLRYSLRENVDETVLTLDSDGLYTDFVLVEEQGSRARPGQGYVHHIAVNTPNDSDLYAVLDTINHNPGNHSGIIDRYFFKSLYYRHNSIMFEFATAAPGFTVDTAIKDLGKKLNLPDFMENQRTEIEEKLHDL

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Crispr_ID: NZ_CP031196_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031196_2

322430-322540

Orphan

Consensus_repeat	Method
TCGTAACATTAATTACCAAGTGAAATTAAGGAATACAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031196_2

>merge|NZ_CP031196|2|322430-322540|CRISPRCasFinder
TCGTAACATTAATTACCAAGTGAAATTAAGGAATACAAAAAAATCTTTTGCATAAGAATCACTAAGGAAAATCGTAACATTAATTACCAAGTGAAATTAATGAATACAAAA

>NZ_CP031196|2|1|322430-322540|CRISPRCasFinder
TCGTAACATTAATTACCAAGTGAAATTAAGGAATACAAAA	AAATCTTTTGCATAAGAATCACTAAGGAAAA
TCGTAACATTAATTACCAAGTGAAATTAATGAATACAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031196.1\|WP_037537556.1\|315964_316144_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031196.1\|WP_041079437.1\|324990_326139_+\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|181076
NZ_CP031196.1\|WP_002482214.1\|329291_330134_-\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|223899
NZ_CP031196.1\|WP_069821375.1\|318092_319010_-\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|183829
NZ_CP031196.1\|WP_080773282.1\|314556_314976_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380348
NZ_CP031196.1\|WP_011302246.1\|328997_329204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031196.1\|WP_115347214.1\|317221_317998_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP031196.1\|WP_145437379.1\|326233_327484_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP031196.1\|WP_002482211.1\|327621_328176_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP031196.1\|WP_069821633.1\|321182_322115_+\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133426
NZ_CP031196.1\|WP_002482207.1\|322581_323871_-\|homocysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NZ_CP031196.1\|WP_037537560.1\|328349_328820_-\|thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP031196.1\|WP_115340448.1\|316255_316480_-\|LysR-family-transcriptional-regulator-substrate-binding-protein	unknown	unknown	gnl\|CDD\|176102
NZ_CP031196.1\|WP_011302237.1\|320320_321139_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP031196.1\|WP_037537563.1\|330762_331452_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP031196.1\|WP_115352825.1\|316627_317203_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP031196.1\|WP_069826128.1\|319223_319979_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP031196.1\|WP_002482215.1\|330134_330749_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_CP031196.1\|WP_002482208.1\|324088_324994_+\|cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|107204
NZ_CP031196.1\|WP_145437377.1\|315085_315895_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|379298

Protein	Function_ID	Function_description	E-value
NZ_CP031196.1\|WP_041079437.1\|324990_326139_+\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	gnl\|CDD\|181076	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase.	0
NZ_CP031196.1\|WP_002482214.1\|329291_330134_-\|urease-accessory-protein-UreD	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	1.83725e-86
NZ_CP031196.1\|WP_069821375.1\|318092_319010_-\|2-dehydropantoate-2-reductase	gnl\|CDD\|183829	PRK12921, PRK12921, oxidoreductase.	1.72629e-127
NZ_CP031196.1\|WP_080773282.1\|314556_314976_-\|cupin-domain-containing-protein	gnl\|CDD\|380348	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to YjlB, a Bacillus subtilis protein of unknown function with a cupin beta barrel fold. The active site of members of the cupin superfamily is generally located at the center of a conserved barrel and usually includes a metal ion. The different functional classes in this superfamily include single domain bacterial isomerases and epimerases involved in the modification of cell wall carbohydrates, two-domain bicupins such as the desiccation-tolerant seed storage globulins, and multidomain nuclear transcription factors involved in legume root nodulation.	3.01581e-64
NZ_CP031196.1\|WP_115347214.1\|317221_317998_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	9.21106e-17
NZ_CP031196.1\|WP_145437379.1\|326233_327484_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.1225e-20
NZ_CP031196.1\|WP_002482211.1\|327621_328176_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.36006e-12
NZ_CP031196.1\|WP_069821633.1\|321182_322115_+\|lactate-dehydrogenase	gnl\|CDD\|133426	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	1.33285e-158
NZ_CP031196.1\|WP_002482207.1\|322581_323871_-\|homocysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP031196.1\|WP_037537560.1\|328349_328820_-\|thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.74376e-25
NZ_CP031196.1\|WP_115340448.1\|316255_316480_-\|LysR-family-transcriptional-regulator-substrate-binding-protein	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.93551e-09
NZ_CP031196.1\|WP_011302237.1\|320320_321139_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	6.23317e-97
NZ_CP031196.1\|WP_037537563.1\|330762_331452_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	5.42683e-92
NZ_CP031196.1\|WP_115352825.1\|316627_317203_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	8.27153e-19
NZ_CP031196.1\|WP_069826128.1\|319223_319979_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.79004e-09
NZ_CP031196.1\|WP_002482215.1\|330134_330749_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	2.41468e-117
NZ_CP031196.1\|WP_002482208.1\|324088_324994_+\|cysteine-synthase-family-protein	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	2.16753e-109
NZ_CP031196.1\|WP_145437377.1\|315085_315895_-\|thioesterase-family-protein	gnl\|CDD\|379298	pfam13622, 4HBT_3, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	2.87737e-46

>NZ_CP031196.1|WP_069821633.1|321182_322115_+|lactate-dehydrogenase
MSKLGIIGLGKVGTQVLTDVQQLNLFSEIILIDDRADVASGEALDHIHSQGLINTAHIKIRSGVYQDLTDADFIVIAASEATDKNNGDRTLLAQGNHDIIKGIMSQIAEVTQEAVVILISNPVDSMVYFANQIDYPAHKIIGTGTALETSRFKTIIADHYQIDPNNVEAFVIGEHGQHAIPVWSKVHIHGMELSEFEALSDRPAIDKSHISSIINEVSMDVFYQKGWTNAAISKVTSFLIQSIALDQRTITPLTSLSAEYGLEDGAFSLPTLIDKKGIVQRFAITLDKEEERQLKEAYEYIRQTIHTAQQ
>NZ_CP031196.1|WP_011302237.1|320320_321139_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MRKWFILGSLFVLTIILAACGKSNGEKEDKEITIAASPAPHGVVLEHAKEEMKKKGYDLKIKTVNDYKVPNKLLDKGDVDANAFQHTPYLKAEKKDHNYKIEEAGKVFTTPMGVYSKKYKDIKDIPKGSTIYVSNNPAEEGRFLSFFVDKGLIKIKKGVSIEDAKFDDIVENKKDLKFNNKQGAEFLPKTYNSKEGAAVIMNSNYAIDNGLTPHKDAIAIEGKSSPFANIVAVQEGHKNDKKFKELMKVLQSKEMKKFITDKYGQDVIPYEK
>NZ_CP031196.1|WP_069826128.1|319223_319979_+|CPBP-family-intramembrane-metalloprotease
MSFKNDHKYQWKDIQGRDFLLPFIYLIGNFCLSIVILTIMIGINETQGKNNANFNANFSGTPGILMEMIAFIIIFALWILFHRHSFRQSWKQGLQNIKQHWKLIVITFIVIIVFKEIYPYLVNAFAPEHWKFEETQNDKMVEEMFATPVSTILAFFSIVIIAPMTEEFLFRHLIIGELGKKLNFYVMSVISIIVFASLHVTEAKSPLEIVMYLAIAVGIVYVYMKSQRSLAVALALHALNNLLAYIFMIIM
>NZ_CP031196.1|WP_069821375.1|318092_319010_-|2-dehydropantoate-2-reductase
MRILVLGAGGIGGYFGGRLAESGQNVTFLVRPKRKSFLERNGLAIHSEQGDYHFNPQLITKDDRVAPFDVILLSSKSYHLEQAMTDLKPFVDGHTAIIPLLNGVAHIPQLQSIFGRDKVMGGYCVIETTLDSMGEIIQTSPFDKLFFGELDGSKSERAQKIAQAFSETKAEFKLSTSIEQGMWHKYLMITVLSSITTLMHAPIGPIRDSDGGINFVRSLYNEVASIMRAHRAPLADDIVSQYMTSFDQLSYHFKTSMQRDMEKGLNIETDHLQGYLLNLADTYQIDAPLLKCVYQNHKVYKEMLK
>NZ_CP031196.1|WP_115347214.1|317221_317998_+|AraC-family-transcriptional-regulator
MNKFNFKNAIGITALEAKMDDFTYKKHSHQEYSIGVTLKGIQGYHLKGERKQSYQNGVMFFNPEENHDGMSNGVQGLEYIMLYIKPEQLLEATNQKHMVQFKEPIVYNNKIAQNILQLANSIFNGSDDVICYEHFQNLVDGLKIDTYYDEFNVDNVKLKLAKDIIKNNVSTSFKLDFICSELNLSKYQFIRLFKQQTGITPYQYYINYKAEVAKHIIEKSKDVYLAIAECAFVDLAHLNKVFKYRYGVTAYQYMSKLK
>NZ_CP031196.1|WP_115352825.1|316627_317203_+|LysE-family-translocator
MNLLPFIMYTFLITMTPGPTNIDILNTIRNKGLKGGIQYTYGAITAFVFLLIISTVVNIFLSEKMPSFLLFMKLIGSIYMLYLIYTLFRKHSENKVENDIGTFYSGFALQFLNPKVVTFTMTVIPTFVLVNQPSTLMISIYVIMTSIIALISFSFWIFFGTLLKTFIQKHEMIVNITMALFLLYAAIIVWV
>NZ_CP031196.1|WP_115340448.1|316255_316480_-|LysR-family-transcriptional-regulator-substrate-binding-protein
MIASISACLNPFFSNAATALLAQLQQDDIDLVIGEQTELQEGICYEYWFDEPFELVFSKNHPLAQSETINLIDL
>NZ_CP031196.1|WP_037537556.1|315964_316144_-|hypothetical-protein
MNFIATSDSVAICPQSYMKKVNSDIYTHIQLPNASRTIGIYAKKQYHIDNFFNILQISK
>NZ_CP031196.1|WP_145437377.1|315085_315895_-|thioesterase-family-protein
MSSKHNFDKATELTIQSSGVYRGQTSESYANMVGPFGGVIASTLLRAVLDHDERLGDPISLTINYAAPVANGDFKIVATPSRTNRSTQHWYIELTQNEQIIITGTAVTANRRDTWSSTELSFPDFPNPDQIEPTPLDSAPPWAQNYEIRMIKGAPLAIATTDYPDSITLQWIRDNPNRDLDFLSLAAICDAFFPRIYVRRKELVPIGTISLTIYFHADAETLLANGSRSVLGHTRALKFFNGYFDQTGEIWSQDHNLLATTSQIVYYKS
>NZ_CP031196.1|WP_080773282.1|314556_314976_-|cupin-domain-containing-protein
MYHHVLGSHEHLEKTITSNQWGNTWTGGVFSYHHYHSNAHETLLAIRGEANLLIGGRKGSTINVTAGDVLILPAGTGHKLLNASHDFIVMGAYPNGQSFDICTGDKNNRTQDIMNIENVPLPETDPLWGEQGPLLLHWH
>NZ_CP031196.1|WP_002482207.1|322581_323871_-|homocysteine-synthase
MTQTPWHLDTLSIHGGQVVDDFSKARAVPIYQTSSYVFDNTEHARKLFALEEDGNIYTRIMNPTQNVFEERIAALEGGVGALATSSGQAAIHLALLNIVESGDEIVASSNLYGGTYNLLNITFKKLGIKVHFVDPSHPDNFKNAITDKTKAVYAETIGNPRIDVLDIEAVADIAHNHNIPLIVDNTFPTPYLLRPFEFGADIIVHSATKFIGGHGTSIGGVIVDSGKFNWDNGKFPGLVEPDESYHGISYTKDVGEAAYITKARVQLLRDLGSAVSPFNVHEFLIGLETLHLRLERHSENALRVAQYLEQHPKVTWVNYPGLENNAYHQLAQKYLPDGQGAILTFGIDGTVDDIAKFVDGLNLFSHLANVGDSKSLIIHPASTTHLQLSPEDQKASGVVPELVRLSVGTENINDIIADLDNGFKESLGN
>NZ_CP031196.1|WP_002482208.1|324088_324994_+|cysteine-synthase-family-protein
MIAFDLIGNTPLVLLESFSNKDVQIYAKLEQYNPGGSVKDRLGKHLIETAIRENIIQKGDVVVEASAGNTGIGVAIAANHYGVSAVIFAPEGFSEEKISIIKALGAEVIRTDQTLGMAGAQKAARDYELQTGAYYLNQFESYRNPETYKSTIGKEITDKLKDIDYFVGGVGSGGTFAGVAEHLAASYRTESVIVEPEGSILSGGNAHSHDIEGIGSEKWPSFLPKALVSDIIKVSDDAAFQNVKLLARQEGLLVGSSSGAALQGALEIKKHINKGVIVTIFPDGSDRYMSKQILNYKETIK
>NZ_CP031196.1|WP_041079437.1|324990_326139_+|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase
MNKKTQLIHGGQTTDPYTGAVTTPIYQTSTYMQDGIGDMRQGYEYSRSANPTRSALEGLIADLEQGESGFAFGSGMAAISAVIMLLDKGDHLLINSDVYGGTYRALTKVFNRFGIDAEFIDTTNIEVVEQYIKPETKMLYIETPSNPLLRVTDIKKSAEIAKKHHLISVVDNTFMTPYFQNPLTLGIDIVLHSATKYIGGHSDVVAGLVATSDAELAERLGFIQNSTGGVLGPQDSYLLIRGIKTLGLRMEQVQRNTLAIIDMLQQHSAVKQVFHPSISDHLNHDIHEAQSEGHTGVVAFEVADIESAKKVISESHYFTLAESLGAVESLISVPALMTHASIPKDIREKEGIADGLVRLSVGIEDTKDLVEDLEQSLNALDK
>NZ_CP031196.1|WP_145437379.1|326233_327484_-|MFS-transporter
MKFSKLVFPGIAMIATTYGLGRFSFGLFLPDITNDLSLSASQAGLISSLFYLAYCFTIVYSTLQTDTIGPKRMIILAGISVVIGLITIGVSSNAIILSIGVIFTGASTGLVSPPYGYTISLWINLQDQGKANTWINSGTSMGLMFTGITAMLVFLDWRHTYLIYALIALVVLFWNYIVIPKLQKDIKIHTGSLNIRDISASTRIVTASTLLGISTAPFWTFSKSFVQLTGNYSDIALSIFWILIGIFGVVGGISGSIIDKKGIHFAFNFGVIALACASVLLAFTPSIWLLPFVASSLFGLSYIFLTGVLLVWGIKLFVKNASLGIGIPFLLLAVGQVIGSSIAGIVIDILNYQYSFIIFGIIGLIPLLIYPKVEVTENKIPKGCYSKLQKTNSDILNDTYAQHQTSNSNNDEYNHI
>NZ_CP031196.1|WP_002482211.1|327621_328176_-|TetR/AcrR-family-transcriptional-regulator
MSQKKQDILSVAERLFYEYGFKGVGLKQIIQEANVATMTLYNHFESKDNLVAQVLKQRETRYWHYLDSHVEQHPEKPFISAVTAHCQWLNDYSYKGDMFMRAIEDYADTDNEIESTARGHKERLLHYLEKLADDAGIENGYDLAVQYTLLLEGTTSMTALLGSKDATSHAITMAKLLLNEAHNQ
>NZ_CP031196.1|WP_037537560.1|328349_328820_-|thioesterase
MTDEYIYKNTVQPSWIDNNNHMHDAQYYSIFSDAVVGFFESIDFSTDYRHSQDVTMFSIEAHISFLKELLLDESFYIKVHIYDYDAKRVHLFLTMYNSNDERNATYEAIMMGVGNETRRSMDFPKPIQEKIKHYFDQQNTFDVPKQLGHVIGIPKK
>NZ_CP031196.1|WP_011302246.1|328997_329204_+|hypothetical-protein
MVLVALILFIISIVFLIYSITLLMGKDGTMFSLFTKEEKALTKGQKLTIYLITIVLFVASLVWLLNLI
>NZ_CP031196.1|WP_002482214.1|329291_330134_-|urease-accessory-protein-UreD
MSNNKQAWTGQLDLSVFNNGKKSVARDVFFEKALKVMRPVYLNQSDIPTFYIVNVGGGYLDGDRYTMNFNIDSDAKVILTSQGATKIYKTLNDHVEQYQTFNIKNNGYAEYVGDPIIAFENAKFYQHNVFNLESTASLFYTDILTPGYSKSDKRFSYTYMHLLNEIYVDDALVTFDNMLLDPQKQNVDGLGYMEDYTHLGSCYFIHPSVNQKFIEQVYEEIKHFQHKYDCRFGITHLPTHGFSLRILSNKTQVIESIITAVQCYVVKQIFDRDVDFLRKY
>NZ_CP031196.1|WP_002482215.1|330134_330749_-|urease-accessory-protein-UreG
MTDTIKIGVGGPVGAGKTQLIEKIVKRLAKDMSIGVITNDIYTKEDEKILVNSGVLPEDRIIGVETGGCPHTAIREDASMNFAAIDELKERNDDIELIFIESGGDNLAATFSPELVDFSIYIIDVAQGEKIPRKGGQGMIKSDFFVINKTDLAPYVGASLDRMAEDTKVFRGKRPFTFTNLKTDEGLDEVIQWIEQDVFLKGLA
>NZ_CP031196.1|WP_037537563.1|330762_331452_-|urease-accessory-protein-UreF
MIDHAHLRLFQFCDSQFPTGAFSHSFGLETYIQRDTVHDEESFQQWLVLFLNEQLTYADGLTMRLVYDALNENDTKAILKLDRILFVQNLPKETRQGSKQMGNRMVKLASELYDSDWINWYHDQMKDKKASLHPAICFTMLGHHLGVDIETIIDYYLYQNVSSLTQNAVRAIPLGQTAGQRIVHKMIPIMKETRDHIMTIPASQLGITAPGLEINQMEHENVNVRIFIS

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Crispr_ID: NZ_CP031196_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031196_3

1588319-1588410

Orphan

Consensus_repeat	Method
ACCACTATCTCAATAAATTGAGAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031196_3

>merge|NZ_CP031196|3|1588319-1588410|CRISPRCasFinder
ACCACTATCTCAATAAATTGAGAAGTATCAGCTTGGGTTTACAAGTGCCTTTGCACTTGCATAAGAACCACTAACTCAATAAATTGAGAAGT

>NZ_CP031196|3|2|1588319-1588410|CRISPRCasFinder
ACCACTATCTCAATAAATTGAGAAGT	ATCAGCTTGGGTTTACAAGTGCCTTTGCACTTGCATAAGA
ACCACTAACTCAATAAATTGAGAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031196.1\|WP_145437561.1\|1591798_1593559_-\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274738
NZ_CP031196.1\|WP_037538515.1\|1595122_1596682_-\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_CP031196.1\|WP_002483430.1\|1590144_1590771_-\|poly-gamma-glutamate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|368663
NZ_CP031196.1\|WP_002483427.1\|1588475_1588772_-\|thiamine-binding-protein	unknown	unknown	gnl\|CDD\|223090
NZ_CP031196.1\|WP_002483417.1\|1574138_1575812_-\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_CP031196.1\|WP_002483421.1\|1579867_1580401_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP031196.1\|WP_069821942.1\|1586402_1587944_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|184624
NZ_CP031196.1\|WP_145437562.1\|1597058_1598108_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP031196.1\|WP_069821943.1\|1582392_1585056_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP031196.1\|WP_002483431.1\|1590931_1591798_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|237006
NZ_CP031196.1\|WP_002483425.1\|1586052_1586403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226923
NZ_CP031196.1\|WP_002483418.1\|1575958_1577461_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP031196.1\|WP_002483434.1\|1594625_1594841_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031196.1\|WP_069821945.1\|1578628_1579663_-\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132883
NZ_CP031196.1\|WP_002483424.1\|1585524_1586013_-\|energy-coupling-factor-transporter-S-component-ThiW	unknown	unknown	gnl\|CDD\|131412
NZ_CP031196.1\|WP_145437559.1\|1580412_1582380_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP031196.1\|WP_145437560.1\|1589443_1590064_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368663
NZ_CP031196.1\|WP_002483419.1\|1577638_1578457_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NZ_CP031196.1\|WP_002483428.1\|1588988_1589372_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP031196.1\|WP_002483433.1\|1593674_1594463_-\|TIGR00282-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|379099

Protein	Function_ID	Function_description	E-value
NZ_CP031196.1\|WP_145437561.1\|1591798_1593559_-\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl\|CDD\|274738	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. This family of proteins contains a C-terminal thiamine diphosphate (TPP) binding domain typical of flavodoxin/ferredoxin oxidoreductases (pfam01855) as well as an N-terminal domain similar to the gamma subunit of the same group of oxidoreductases (pfam01558). The genes represented by this model are always found in association with a neighboring gene for a beta subunit (TIGR02177) which also occurs in a 4-subunit (alpha/beta/gamma/ferredoxin) version of the system. This alpha/gamma plus beta structure was used to define the set of sequences to include in this model. This pair of genes is not consistantly observed in proximity to any electron acceptor genes, but is found next to putative ferredoxins or ferredoxin-domain proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM 15236, Rhodopseudomonas palustris BisB5, Os, Sphingomonas wittichii RW1 and Streptomyces clavuligerus. Other potential acceptors are also sporadically observed in close proximity including ferritin-like proteins, reberythrin, peroxiredoxin and a variety of other flavin and iron-sulfur cluster-containing proteins. The phylogenetic distribution of this family encompasses archaea, a number of deeply-branching bacterial clades and only a small number of firmicutes and proteobacteria. The enzyme from Sulfolobus has been characterized with respect to its substrate specificity, which is described as wide, encompassing various 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme from Hydrogenobacter thermophilus has been shown to have a high specificity towards 2-oxoglutarate and is one of the key enzymes in the reverse TCA cycle in this organism. Furthermore, considering its binding of coenzyme A, it can be reasonably inferred that the product of the reaction is succinyl-CoA. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and.	0
NZ_CP031196.1\|WP_037538515.1\|1595122_1596682_-\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_CP031196.1\|WP_002483430.1\|1590144_1590771_-\|poly-gamma-glutamate-hydrolase-family-protein	gnl\|CDD\|368663	pfam05908, Gamma_PGA_hydro, Poly-gamma-glutamate hydrolase. This family consists of a number of bacterial and phage proteins that function as gamma-PGA hydrolase enzymes. Structurally the protein in this family adopted an open alpha/beta mixed core structure with a seven-stranded parallel/anti-parallel beta-sheet. This structure shows similarity to mammalian carboxypeptidase A and related enzymes.	2.84718e-64
NZ_CP031196.1\|WP_002483427.1\|1588475_1588772_-\|thiamine-binding-protein	gnl\|CDD\|223090	COG0011, COG0011, Uncharacterized conserved protein [Function unknown].	1.79713e-25
NZ_CP031196.1\|WP_002483417.1\|1574138_1575812_-\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
NZ_CP031196.1\|WP_002483421.1\|1579867_1580401_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.19243e-69
NZ_CP031196.1\|WP_069821942.1\|1586402_1587944_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|184624	PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP031196.1\|WP_145437562.1\|1597058_1598108_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP031196.1\|WP_069821943.1\|1582392_1585056_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP031196.1\|WP_002483431.1\|1590931_1591798_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	4.14915e-176
NZ_CP031196.1\|WP_002483425.1\|1586052_1586403_-\|hypothetical-protein	gnl\|CDD\|226923	COG4550, COG4550, Predicted membrane protein [Function unknown].	1.85098e-25
NZ_CP031196.1\|WP_002483418.1\|1575958_1577461_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP031196.1\|WP_069821945.1\|1578628_1579663_-\|LD-carboxypeptidase	gnl\|CDD\|132883	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	7.21076e-119
NZ_CP031196.1\|WP_002483424.1\|1585524_1586013_-\|energy-coupling-factor-transporter-S-component-ThiW	gnl\|CDD\|131412	TIGR02359, conserved_hypothetical_protein, energy coupling factor transporter S component ThiW. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	5.42402e-50
NZ_CP031196.1\|WP_145437559.1\|1580412_1582380_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP031196.1\|WP_145437560.1\|1589443_1590064_-\|hypothetical-protein	gnl\|CDD\|368663	pfam05908, Gamma_PGA_hydro, Poly-gamma-glutamate hydrolase. This family consists of a number of bacterial and phage proteins that function as gamma-PGA hydrolase enzymes. Structurally the protein in this family adopted an open alpha/beta mixed core structure with a seven-stranded parallel/anti-parallel beta-sheet. This structure shows similarity to mammalian carboxypeptidase A and related enzymes.	1.76524e-64
NZ_CP031196.1\|WP_002483419.1\|1577638_1578457_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.11594e-78
NZ_CP031196.1\|WP_002483428.1\|1588988_1589372_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	2.88328e-32
NZ_CP031196.1\|WP_002483433.1\|1593674_1594463_-\|TIGR00282-family-metallophosphoesterase	gnl\|CDD\|379099	pfam13277, YmdB, YmdB-like protein. This family of putative phosphoesterases contains the B. subtilis protein YmdB.	6.36235e-150

>NZ_CP031196.1|WP_069821942.1|1586402_1587944_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MNEEQRKSTSIDILAEREKKTKDYSKYFEHVYQPPSLKEARKRGKAEVNYNDDFQIDEKYRNMGQGKTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEIGNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLSKAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEVRDLARQGYKEITLLGQNVNAYGKDIDGLAYGLGDLLEDISKIDIPRVRFTTSHPWDFTDRMIEVIANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTHIPNVALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDGTPAAKMNDNVPLDVKKDRLQQLNKKVAYYSERAMQQYEGQTVQVLCEGVSKKDDTVLSGYTSKNKLVNFKAPKSMTGKIVNVYIDEAKQFSLNGTFISVNDKTVVTQ
>NZ_CP031196.1|WP_002483425.1|1586052_1586403_-|hypothetical-protein
MYEKDDILAEAERLSERIKSLDTVKEYHKVESQIHHNENLEQRMKELKKNQKQSVNLQNYGKIHALQASEEKIQDIEEDINILPIVEEFRESQAEANDLLQMMIHTMSDRLNKHQE
>NZ_CP031196.1|WP_002483424.1|1585524_1586013_-|energy-coupling-factor-transporter-S-component-ThiW
MKTKKLTLTAIFIAINVVLSSIIVIPLGPIKAAPMQHLINVLCAVFVGPWFGLAQAFISSILRMIFGTGSFFAFPGSMIGVLLASGFYYYRKHLFMAAVGEVIGTGIIGSIMCIPLAWVLGFSNLAIKPLMLAFIVSSVIGAIISYIILMILKRKGILKRYL
>NZ_CP031196.1|WP_069821943.1|1582392_1585056_-|DNA-mismatch-repair-protein-MutS
MTNQTPMMQQYLKIKSQYQDCLLFFRLGDFYEMFFEDAKVASRVLEITLTKRDAKKEDPIPMCGVPYHSADGYIETLISNGYKVAICEQMEDPRQTKGMVRREVVRIVTPGTVMGQGGVDEKQNNYILSFIQSASMYALSYCDVSTGELKVTHFEDEATLINEITTINPNEIVVKEAIGESLKRQISLTTETITVLPDISDVKYDVNTTNDSHLYHVTQLLLDYIYHTQKRDLSHIESVITYEAVDFMKMDFYAKRNLELTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLIQKKQIESRLDTVDQFINHFIERDTLRGYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIPNIKNLLQAFDEQMTAQFEALEPLDDLLNLLEESLKEEPPISVKEGGLFKTGFNETLDSYLEASKNGKNWLAELQTKERQRTGIKSLKISFNKVFGYFIEITRANLQGFDPTEFGYHRKQTLSNAERFITDELKEKEDIILGAEDKAIELEYQLFVQLREQIKAYTERLQKQAKVISELDCLQSFAEIAQKYNYARPTFSEDKTLELVNSRHPVVERVMDHNDYVPNDCELDKETFIYLITGPNMSGKSTYMRQVAIISIMAQMGAYVPCESAILPVFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALAHATEHSLIIFDEIGRGTSTYDGLALAQAMIEYVAHTSHAKTLFSTHYHELTTLDQSLACLKNVHVAANEYNGELIFLHKVKDGAVDDSYGIQVAKLAHLPEEVINRAQVILDAFEQLNNQTNNKNTMNHVDIPTDKNLNASSDEVTETKATYYVDNEQSAATQHAKSDGQFEQAAFDLFDSPAKQSEIENEIKTLNLSNMTPIEALVKLSELQKQLK
>NZ_CP031196.1|WP_145437559.1|1580412_1582380_-|DNA-mismatch-repair-endonuclease-MutL
MGKIKELQTSLANKIAAGEVVERPGSVVKELLENAIDAQATEINIEVEQSGVASIRVVDNGTGIHIDDLGLVFHRHATSKLDADDDLFHIRTLGFRGEALASISSVAKVTLSTCTDNEEGQQIYVENGEILDQKPAKAKRGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSHPDIRISLISDGKTIMKTNGSGRTNEVMSEIYGMKVAKDLVHISGDTSDYHLEGFVAKPEHSRSNKHYISIFINGRYIKNFLLNKAILEGYHTLLMIGRYPICYINIEMDPILVDVNVHPTKLEVRLSKEDQLFNLIVEKIREAFKDRILIPQNDMDKITKKNKVLDQFEQQKLDFEKKQQQENHSQPVNSHDEDEKNDDKAYHSSQTHYEPTDYILKEENTTSVSTSLNSDDDYTQTQKSVLYDLENENQSEFINEADFDSDISNHSDYDIKGSVSKDPSRRVPYMEVVGQVHGTYIIAQNENGMYMIDQHAAQERIKYEYFREKIGEVTNEIQNLLIPLTFHFSTDELMIINQHKEELDKVGVHLEPFGGNDYIVDSYPVWFPTSEAEEIIKDMIEYVLEHKKVNVKKIREDAAIMMSCKKSIKANHYLKNNEMADLVNQLRETEDPFTCPHGRPIIINFSNYELERLFKRTI
>NZ_CP031196.1|WP_002483421.1|1579867_1580401_-|glycerol-3-phosphate-responsive-antiterminator
MKPYILPAIRSMKDLEKMTQTDYKECVLLDTHIGHIKSIMDLLNKHHIETYMHIDLIKGMSHDEFACEYIIQNYHPKGIVSTKTKVINKAKALNTTTVFRVFVLDSHALRRSIELIKRVEPDYVEVLPGVATKAIQIINEETNTSVIAGGLINTVEEVDIAVKNGAKYITTSDRHLW
>NZ_CP031196.1|WP_069821945.1|1578628_1579663_-|LD-carboxypeptidase
MIKPKQLKRGDTVAIVSLSSGLAGETDMLWRTYQGINRLKYVFGLNVKVMPNALKGRTYISQHPEARAEDFNNAVKDPTIKGIISCIGGDDAIKILPFVNLEALREHPKIFSGYSDSTTVHMMFYKMGVVSFYGPALLTDFAENIAMDDYTVRDIEKFWFNTNIIGEILSAKYIRPFGLAWYIENKMIARQTIQQQGYELIQGYGIQQGHLIGGNLETLTSLINTDLFPNKTDFEDAIIFLETSEDTPDPQAFEAMLVQLIQQDALKQCNGMIIGKPFDNVYYTAYKEKILDVLKQYNYTNIPVLYNMSFGHNEPKHMLPYGLQAKIDCNKKQFKIKENAVNTT
>NZ_CP031196.1|WP_002483419.1|1577638_1578457_-|aquaporin-family-protein
MSVYFAEFLGTAILVLFGGGVCANVNLKKSAGNGADWIVIALGWGLAVSMGVYAVGNISGAHLNPAVTLAFAMDGALSWSMVPGYIVCQMLGGIFGGVLVWLMYLAHWKQTEDQGAKLGVFSTAPAIKNYFANFLSEIIGTATLTLGLLFIGMNKIADGLNPLIVGGLIVAIGLSLGGPTGYAINPARDLGPRIAHAILPIAGKGKSNWSYAIVPVLGPITGGMIGAVIYRLFYKGAFDTMSVVAIVLLIVTIALGVVLNKAKSAKGIESVY
>NZ_CP031196.1|WP_002483418.1|1575958_1577461_-|glycerol-kinase-GlpK
MEKYILSIDQGTTSSRAILFDKEGKIKGVAQREFKQFFPKSGWVEHDANEIWTSVLAVMAEVLNESNVGAEQIASIGITNQRETTVVWDKHTSRPIYHAIVWQSRQTQGICQDLKEQGLEDKFRNKTGLLLDPYFAGTKVKWILDNVEGAREKADNGDLLFGTIDSWLVWKLSGGQAHITDYTNASRTLIYNIYDLEWDQELLDILEIPNTMLPEVKASSEVYAHTIDYHFFGEEVPISGIAGDQQAALFGQACFDRGDVKNTYGTGGFMLMNTGEEAVSSKSGLLTTIAYGLDGKVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSENYAERIESTEGVYVVPAFVGLGTPYWDADARGAIFGLTRGTEKEHFIRATLESLCYQTRDVLEAMEKDSGIKVNNLRVDGGAVKNNFIMQFQADLLDVGVERPEINETTALGAAYLAGLAVGFWDSKDEIANRWNLEKEFQPDMIEKDRERFYKGWKKAVEATQVFKLEDE
>NZ_CP031196.1|WP_002483417.1|1574138_1575812_-|glycerol-3-phosphate-dehydrogenase/oxidase
MSLSTLKREQIKKDLKDQEFDVVIIGGGITGAGIALDASERGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQLQVGVVAETGRERAIVYENGPHVTTPERMLLPMHKGGSMGKFTTSIGLAMYDRLAGVKKAERKTMLNAKETLEKEPLVKKAGLKGGGSYVEYRTDDARLTIEVMKRAEEKGAKVINHTKSVHFTYDSNEKVNGIQVEDQINNETYPIKAKKVINASGPWVDEVRSGDYARNNKQLRLTKGVHIVIDQSKFPLGQAVYFDTEKDGRMIFAIPREGKAYVGTTDTFYDNNKTSPLANQEDRDYLIDAINYMFPDVNVADEDIESSWAGVRPLILEEGKDPSEISRKDEVWEGKSGLLTIAGGKLTGYRHMALEIVDLLSKRLKSEFGLKFDKCATKHLTISGGDVGGSANFDKFIEQKVEEAKSYQIDESTARHFASKYGSNAEELFKIAQTAQYQETGLPLDIYTELVYSIQNEMVYRPTDFFIRRTGKLYFKIDDVLNYKEQVIDVMAGLLGYTNIEKEAYTKELQIAIDEAQTGNHQPAVKE
>NZ_CP031196.1|WP_002483427.1|1588475_1588772_-|thiamine-binding-protein
MNDTLMSIQIIPKTANGEDVIPYVDEAIKVIDDAGLTYRVGPLETTVQGEMNECLILIQKLNDRMVELEIPSIISQVKFYHVPEGITIETLTGKYDEL
>NZ_CP031196.1|WP_002483428.1|1588988_1589372_-|Rrf2-family-transcriptional-regulator
MKYSKATNYALHALLFMIKNNGDVQRIPVQDLAKALGISTTYLSKILTRLVKVGVISASSGAKGGYQLSLKWQDVTIYEVITTIDGKQSLFEDSFNHGDSCPINKLMIEAEQALIGSLKQKKLKDLI
>NZ_CP031196.1|WP_145437560.1|1589443_1590064_-|hypothetical-protein
MADKYKSMTELAEYTTENSDWSVVRRDLDSQVIISAIHGGAIEPGTTEIADLTAQKGDFDYFTFKGTKSKGNEALHVTSRHYDQPDMMEMVKNKTHAVAIHGCVGDDSIVYMGGKDESLIRALKEQFEQLDIKVDQAPKHMSGAHDDNIINCCSTGEGVQLELTSGLRKLCFKNQKYNKHSREDQSNWSQFMDNFTSAMVQAIQKV
>NZ_CP031196.1|WP_002483430.1|1590144_1590771_-|poly-gamma-glutamate-hydrolase-family-protein
MIDQFMSMSELIDHTEEHKDWQILYNERVAKSLITAVHGGAIERGTSEIAQLISEIGGYSFYTFKGIRKNKNHELHVTSKHFDEPILNELVPTHEAVVSLHGCMGDDVALYIGGKDLELSYEITQQLQKIGIKVKPAPAHIAGMQTENFVNKGKRDAGVQLELTVALRKQCFKNNKYNLHDRENRENWSQLMFSFSTAIANALKILND
>NZ_CP031196.1|WP_002483431.1|1590931_1591798_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MATFKDFRNNVKPNWCPGCGDFSVQAAIQKAAANVGLEPEEVAIITGIGCSGRLSGYVNSYGVHGIHGRSLPLAQGVKMANKDLTVIASGGDGDGYAIGMGHTIHALRRNMNMTYIVMDNQIYGLTKGQTSPSSAQGFITKSTPKGNIEQNVAPLELALSSGATFVAQGFSSDIKGLTKMIEDAINHDGFSFVNVFSPCVTYNKVNTYDWFKENLTNIDDIEDFDIKDKQKATQKVLEYNSLIKGIVYQDTETPSYESQIEEMNGTPLAKQDIHIDEEQFEALTKQFV
>NZ_CP031196.1|WP_145437561.1|1591798_1593559_-|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MKSQVSWKVGGQQGEGIESTGEIFATAMNRKGYYLYGYRHFSSRIMGGHTNNKIRVSTTPVHAISDDLDILIAFDQETIEVNHHEMREDSVIIADSKAKPEKPDNCRAQLIDLPFTATAKELGTALMKNMVAIGATCAVMDLDISDFETLITNMFTKKGDKVVELNIEALNEGYRLMNEQLNNVDADFILDKTDGKPHLYMIGNDAIGLGALSAGSRFMAAYPITPASEIMEYMIENLPKVGGTVVQTEDEIAAANMAIGSNYAGVRAFTASAGPGLSLMMEAIGLSGMTETPFVVINTQRGGPSTGLPTKQEQSDLMQMIYGTHGDIPKIVVAPTDAEDAFYLTMEAFNLAEQYQCPVIVLSDLQLSLGKQTVEQLNYNKIEINRGDMIQSDIEREENDKTYFKRYALTESGVSPRPIPGVKGGIHHVTGVEHNEEGKTSEAADNRQQQMDKRMRKTENLLIQNPVEADVQHETADILYLGFISTKGAIQEGKSRLESQNIKVNHIQIRQLHPFPSETIQKEVDKASKVVVVEHNYQGQLANILKMNVNLGDKLVNQTKYDGTPFLPHEIEANGLEIAKEIKELV
>NZ_CP031196.1|WP_002483433.1|1593674_1594463_-|TIGR00282-family-metallophosphoesterase
MRLLFIGDIVGKVGREAITTYLSRLKQTYRPTVTIVNAENAAHGKGLTEKIYKDLLREGVDFMTMGNHTYGQRQIYDFIDSANRMVRPANFPEEAPGVGMRFIQINEIKLAIINLQGRAFMQDIDDPFKKADELINEAKKETDYIFVDFHAETTSEKNAMGWYLDGRASAVVGTHTHIQTSDERILPGGTGYITDVGMTGFYDGILGINRHEVITRFITSLPQRHVVPDEGRSVLSGVIIDINKEGRTTHIERVLINDDHPF
>NZ_CP031196.1|WP_002483434.1|1594625_1594841_+|hypothetical-protein
MSINIDPQHFADLVVTANPSKSEDAEDIAKESLELYINAYRLAERYANISTNCYDTAEIIKEVQQADLELT
>NZ_CP031196.1|WP_037538515.1|1595122_1596682_-|ribonuclease-Y
MNLLGLLLILLGIILGVVVGYIVARNLLHQKQLQARQTAEDIIEQGNKEAENIKKEKLLEAKEENQIIKEQSEIELRERRGDLQKQEARLLQKEENLERKSDLLDKKDEILEQKESKLEERQQQVDAKESSVQTLINKHEQELERISGLTQAEAAQEQLQRVEDELSQDIAILVKEKEREAKEAVDKNAKELLATTVQRLAAEHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVDKARKEVDDIIRDAGEQATFEINVHNMHPDLVKILGRLQYRTSYGQNVLKHSIEVAHLSGILAAELGEDITLAKRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYAENETVINAIHSHHGDVEPTSIISILVAAADALSAARPGARKETLENYIRRLERLETLSESYEGVEKAFAIQAGREIRVIVSPDTIDDLKSHRLARDIKSQIEDELQYPGHIKVTVVRETRAIEYAK
>NZ_CP031196.1|WP_145437562.1|1597058_1598108_-|recombinase-RecA
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGAEHEIVNKSGAWYSYNGERMGQGKENVKLYLKENPAIQEEIDQKLREKLGIFDGDVEEKEAESPATLFDEEE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP031196_1	1.8\|194962\|34\|NZ_CP031196\|CRT	194962-194995	34	NZ_CP031196.1	190408-190441	2	0.941

1. spacer 1.8|194962|34|NZ_CP031196|CRT matches to position: 190408-190441, mismatch: 2, identity: 0.941

tgagtcattaagtgagagtgagtcactaagtgca	CRISPR spacer
tgagtcattaagtgcgagtgagtcattaagtgca	Protospacer
************** **********.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1012998 : 1120122

113

Staphylococcus_phage(57.97%)

tRNA,terminase,holin,protease,capsid,integrase,head,portal,tail

attL 1035001:1035018|attR 1084118:1084135

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002482875.1\|1012998_1013469_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_002482876.1\|1013649_1014249_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
WP_011302805.1\|1014270_1014456_+	hypothetical protein	NA	NA	NA	NA
WP_011302806.1\|1014612_1015029_+	hypothetical protein	NA	NA	NA	NA
WP_002482879.1\|1015406_1016792_+	class II fumarate hydratase	NA	NA	NA	NA
WP_115338456.1\|1016994_1017822_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_129530954.1\|1018006_1019122_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_002482882.1\|1019136_1019760_+	response regulator transcription factor	NA	NA	NA	NA
WP_129530955.1\|1019885_1021175_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_069822073.1\|1021615_1021795_+	hypothetical protein	NA	NA	NA	NA
WP_145437485.1\|1021941_1022250_-	hypothetical protein	NA	NA	NA	NA
WP_041080116.1\|1022585_1023386_-	ABC transporter permease	NA	NA	NA	NA
WP_011302813.1\|1023859_1024711_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_002482887.1\|1025139_1025604_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002482888.1\|1025851_1026982_+	DUF445 domain-containing protein	NA	NA	NA	NA
WP_002482889.1\|1027050_1027395_+	YlbF/YmcA family competence regulator	NA	NA	NA	NA
WP_041080114.1\|1027810_1028995_+	DNA repair exonuclease	NA	NA	NA	NA
WP_002482891.1\|1028996_1031930_+	AAA family ATPase	NA	NA	NA	NA
WP_002482892.1\|1031929_1032871_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
WP_011302817.1\|1033014_1034007_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_002482894.1\|1034227_1034791_-	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_002482895.1\|1034995_1035370_-	YtxH domain-containing protein	NA	NA	NA	NA
1035001:1035018	attL	NA	NA	NA	NA
WP_002482896.1\|1035448_1035874_-	HIT family protein	NA	NA	NA	NA
WP_002482897.1\|1036002_1036740_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.5e-24	28.8
WP_041080112.1\|1036736_1037960_+	ABC transporter permease	NA	NA	NA	NA
WP_002482899.1\|1038022_1038526_-	hypothetical protein	NA	NA	NA	NA
WP_037538155.1\|1038787_1039822_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_002482901.1\|1039907_1040831_+	ferrochelatase	NA	NA	NA	NA
WP_041080110.1\|1040848_1042243_+	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_002482903.1\|1042413_1042971_+	serine hydrolase family protein	NA	NA	NA	NA
WP_145437486.1\|1044189_1045254_-\|integrase	tyrosine-type recombinase/integrase	B7T092	Staphylococcus_virus	8.0e-139	68.6
WP_145437487.1\|1045307_1046351_-	3'-5' exonuclease	A0A0A8WJ41	Clostridium_phage	2.9e-16	30.9
WP_145437488.1\|1046441_1046930_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JD66	uncultured_Caudovirales_phage	1.0e-88	98.1
WP_115343762.1\|1046951_1047251_-	helix-turn-helix transcriptional regulator	A0A2H4J9K2	uncultured_Caudovirales_phage	1.3e-46	98.0
WP_145437489.1\|1047684_1047900_+	DUF771 domain-containing protein	B7T098	Staphylococcus_virus	1.1e-23	72.5
WP_145437490.1\|1048152_1048416_+	DUF1108 family protein	A0A2H4JAN6	uncultured_Caudovirales_phage	3.1e-12	43.7
WP_069878031.1\|1048412_1048637_+	DUF2483 family protein	A0A0E3TAJ7	Staphylococcus_phage	4.4e-31	90.4
WP_145437491.1\|1048626_1049331_+	AAA family ATPase	A0A1W6JQH5	Staphylococcus_phage	5.5e-120	88.7
WP_145437492.1\|1049314_1050655_+	DEAD/DEAH box helicase family protein	Q9T1H9	Lactobacillus_phage	2.0e-126	52.1
WP_145437493.1\|1050679_1051180_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	1.5e-34	46.1
WP_145437494.1\|1051200_1053510_+	DNA primase	A0A059T6A4	Listeria_phage	9.9e-211	48.0
WP_145437495.1\|1053794_1054148_+	VRR-NUC domain-containing protein	A0A1W6JQP1	Staphylococcus_phage	2.3e-42	79.6
WP_145437496.1\|1054107_1054311_+	hypothetical protein	A0A2H4JC77	uncultured_Caudovirales_phage	6.6e-26	91.0
WP_145437497.1\|1054324_1054678_+	hypothetical protein	A0A2H4JF25	uncultured_Caudovirales_phage	1.4e-31	59.1
WP_145437498.1\|1054678_1054888_+	hypothetical protein	NA	NA	NA	NA
WP_145437499.1\|1054865_1055096_+	hypothetical protein	NA	NA	NA	NA
WP_145437500.1\|1055097_1055784_+	N-6 DNA methylase	B7T0H3	Staphylococcus_virus	1.8e-83	67.0
WP_145437501.1\|1055983_1056259_+	hypothetical protein	A0A1W6JQ72	Staphylococcus_phage	1.9e-28	86.5
WP_145437502.1\|1056411_1056924_+	dUTP pyrophosphatase	A0A2H4JB01	uncultured_Caudovirales_phage	1.2e-63	76.3
WP_145437503.1\|1056960_1057185_+	DUF1381 domain-containing protein	A0A2H4JI91	uncultured_Caudovirales_phage	1.2e-12	90.2
WP_145437504.1\|1057181_1057313_+	transcriptional regulator	U3PG58	Staphylococcus_phage	7.7e-12	86.0
WP_145437505.1\|1057312_1057480_+	DUF1514 domain-containing protein	U3PJ58	Staphylococcus_phage	3.7e-19	92.6
WP_145437506.1\|1057495_1057969_-	hypothetical protein	NA	NA	NA	NA
WP_145437507.1\|1058060_1058456_+	hypothetical protein	A0A2H4J610	uncultured_Caudovirales_phage	3.6e-68	99.2
WP_145437508.1\|1058900_1059272_+	HNH endonuclease	U3PD10	Staphylococcus_phage	1.9e-55	95.4
WP_145437509.1\|1059408_1059879_+\|terminase	phage terminase small subunit P27 family	A0A2H4J2Q1	uncultured_Caudovirales_phage	5.5e-84	100.0
WP_145437510.1\|1059871_1061620_+\|terminase	terminase large subunit	A0A2H4JA66	uncultured_Caudovirales_phage	0.0e+00	99.7
WP_145437638.1\|1061877_1063053_+\|portal	phage portal protein	A0A2H4JAR2	uncultured_Caudovirales_phage	2.9e-222	99.7
WP_069795283.1\|1063033_1063591_+\|head,protease	HK97 family phage prohead protease	U3PDW7	Staphylococcus_phage	7.0e-102	100.0
WP_145437511.1\|1063642_1064980_+\|capsid	phage major capsid protein	A0A2H4J2Q9	uncultured_Caudovirales_phage	1.9e-182	91.5
WP_145437512.1\|1065162_1065501_+\|head,tail	phage gp6-like head-tail connector protein	U3PG07	Staphylococcus_phage	8.3e-42	71.4
WP_145437513.1\|1065470_1065794_+\|head,tail	head-tail adaptor protein	A0A2H4J5V5	uncultured_Caudovirales_phage	5.9e-53	97.2
WP_145437514.1\|1065790_1066210_+	hypothetical protein	U3PDX1	Staphylococcus_phage	1.2e-69	93.5
WP_145437515.1\|1066202_1066616_+	hypothetical protein	U3PBL6	Staphylococcus_phage	2.7e-66	97.7
WP_145437516.1\|1066619_1067216_+	hypothetical protein	A0A2H4JA75	uncultured_Caudovirales_phage	2.6e-107	99.0
WP_145437517.1\|1067289_1067826_+	hypothetical protein	A0A2H4J7U3	uncultured_Caudovirales_phage	2.2e-60	99.4
WP_145437518.1\|1068023_1073597_+	peptidoglycan DD-metalloendopeptidase family protein	U3PJ20	Staphylococcus_phage	0.0e+00	78.3
WP_145437639.1\|1073624_1074443_+\|tail	phage tail family protein	U3PDX5	Staphylococcus_phage	3.3e-108	70.4
WP_145437519.1\|1074451_1076284_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_145437520.1\|1076381_1078844_+	hypothetical protein	U3PDY0	Staphylococcus_phage	0.0e+00	73.2
WP_145437521.1\|1079014_1079437_+	hypothetical protein	A0A2H4JID2	uncultured_Caudovirales_phage	1.1e-59	78.6
WP_145437522.1\|1079423_1079822_+	hypothetical protein	A0A2H4JCM1	uncultured_Caudovirales_phage	7.5e-58	86.4
WP_145437523.1\|1079864_1080152_+\|holin	phage holin	A0A2H4JAT1	uncultured_Caudovirales_phage	2.4e-45	95.8
WP_145437524.1\|1080162_1081545_+	CHAP domain-containing protein	A0A2H4J7F3	uncultured_Caudovirales_phage	8.7e-263	93.3
WP_145437525.1\|1081692_1082034_+	hypothetical protein	NA	NA	NA	NA
WP_002482971.1\|1082130_1082541_+	YolD-like family protein	A0A2H4JEH6	uncultured_Caudovirales_phage	2.3e-70	94.1
WP_037538230.1\|1082855_1083047_+	hypothetical protein	A0A2H4J314	uncultured_Caudovirales_phage	2.5e-11	60.7
WP_145437526.1\|1083120_1084920_+	glycosyltransferase	NA	NA	NA	NA
1084118:1084135	attR	NA	NA	NA	NA
WP_037538157.1\|1085981_1087364_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.2e-166	61.1
WP_041080052.1\|1087383_1088388_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.7e-90	49.7
WP_011302826.1\|1088377_1088629_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	4.2e-30	81.1
WP_041080050.1\|1088688_1089165_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.8e-43	53.5
WP_041080136.1\|1089172_1089940_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.5e-99	71.4
WP_129320809.1\|1090035_1091625_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.5e-261	81.6
WP_002482910.1\|1092013_1093210_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.6e-194	86.4
WP_002482911.1\|1093308_1094217_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.3e-101	75.8
WP_002482912.1\|1094425_1095262_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.5e-111	68.2
WP_037538161.1\|1095531_1095888_-	CrcB family protein	NA	NA	NA	NA
WP_011302834.1\|1095884_1096250_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.3e-36	62.8
WP_011302835.1\|1096460_1096766_-	hypothetical protein	NA	NA	NA	NA
WP_002482913.1\|1097050_1097764_+	transaldolase	E3SKN5	Synechococcus_phage	5.0e-20	35.8
WP_129320808.1\|1098138_1098780_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_011302838.1\|1098879_1099329_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.3e-21	47.5
WP_041080046.1\|1099336_1099762_-	hypothetical protein	NA	NA	NA	NA
WP_129320807.1\|1099775_1100246_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	9.9e-25	44.4
WP_002482918.1\|1100466_1100691_+	hypothetical protein	NA	NA	NA	NA
WP_129320806.1\|1100858_1101710_+	autolysin	A0A0E3T9J6	Staphylococcus_phage	1.7e-38	43.3
WP_037538233.1\|1101932_1102859_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002482974.1\|1103033_1104500_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	5.5e-13	58.6
WP_041080040.1\|1105040_1106084_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.3e-130	64.4
WP_002482976.1\|1106090_1106723_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.0e-72	64.8
WP_041080038.1\|1106734_1107916_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-164	71.2
WP_041080037.1\|1107929_1108388_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.5e-57	75.7
WP_037538235.1\|1108652_1109654_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	4.3e-126	68.5
WP_037538238.1\|1109920_1110745_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_041080035.1\|1110980_1111937_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_002482982.1\|1112089_1112491_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_145437527.1\|1112610_1113171_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.1e-66	63.8
WP_002482984.1\|1113167_1114121_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.9e-67	84.0
WP_075340108.1\|1114230_1115400_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.2e-166	77.2
WP_069822067.1\|1115928_1118343_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.3
WP_002482987.1\|1118361_1118673_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.5e-34	68.9
WP_041080032.1\|1118868_1120122_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.9e-38	77.2

DBSCAN-SWA_2

1241895 : 1251018

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002483095.1\|1241895_1242900_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.9
WP_145437531.1\|1242902_1243928_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_145437532.1\|1243948_1245094_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.5e-84	44.4
WP_011302951.1\|1245109_1245370_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.4e-06	44.1
WP_145437533.1\|1245750_1248027_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.8e-29	34.2
WP_069837975.1\|1248207_1250487_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.9e-69	29.4
WP_002483102.1\|1250499_1251018_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.6e-30	46.2

DBSCAN-SWA_3

1377323 : 1387286

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069822000.1\|1377323_1378211_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	6.6e-38	31.4
WP_002483231.1\|1378279_1378786_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_041080657.1\|1378877_1379612_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.8e-09	23.6
WP_002483233.1\|1379595_1380144_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.1e-10	31.4
WP_002483234.1\|1380136_1380874_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_145437540.1\|1381000_1381705_+	response regulator	W8CYM9	Bacillus_phage	8.1e-47	42.6
WP_037538600.1\|1381709_1383473_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	7.8e-22	24.0
WP_037538408.1\|1383895_1384441_+	ECF transporter S component	NA	NA	NA	NA
WP_002483238.1\|1384596_1384845_-	ferredoxin	A0A127AYY7	Bacillus_phage	4.9e-15	48.0
WP_002483239.1\|1384954_1385914_+	hypothetical protein	NA	NA	NA	NA
WP_041080659.1\|1385906_1387286_+	ATP-dependent DNA helicase RecQ	M1PGQ0	Moumouvirus	2.4e-55	32.7

DBSCAN-SWA_4

1822169 : 1830644

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011303433.1\|1822169_1822736_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.7e-27	38.2
WP_041079047.1\|1822738_1823767_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	9.3e-68	44.5
WP_041079046.1\|1823759_1825247_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.5e-46	32.2
WP_145437583.1\|1825225_1827415_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.0e-136	39.4
WP_011303437.1\|1827407_1828079_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_002483703.1\|1828078_1828339_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_041079043.1\|1828341_1829043_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SE76	Cyanophage	6.8e-46	42.5
WP_115338601.1\|1829047_1830175_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_037538847.1\|1830161_1830644_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.6e-20	44.0

DBSCAN-SWA_5

2076332 : 2095062

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037538964.1\|2076332_2077301_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-136	78.6
WP_002483928.1\|2077714_2078683_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	2.2e-175	94.4
WP_037538966.1\|2078804_2080910_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	90.2
WP_129303476.1\|2080872_2081271_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	2.9e-54	77.3
WP_011303649.1\|2081997_2082885_+	DMT family transporter	NA	NA	NA	NA
WP_002483932.1\|2082898_2083399_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.0e-52	72.3
WP_011303650.1\|2083582_2085097_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	9.5e-69	35.8
WP_002483934.1\|2085466_2086972_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.1e-64	32.2
WP_115338644.1\|2087441_2088389_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-10	24.4
WP_002483937.1\|2088558_2089107_-	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	2.0e-29	39.0
WP_041079716.1\|2089284_2090340_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.3e-21	27.2
WP_041079717.1\|2090498_2092016_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_002483940.1\|2092012_2092975_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.8e-26	32.5
WP_011303656.1\|2093283_2095062_-	DNA helicase RecQ	M1PGQ0	Moumouvirus	5.9e-78	36.8

DBSCAN-SWA_6

2103363 : 2110912

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069825721.1\|2103363_2104506_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	5.4e-24	36.7
WP_011303664.1\|2104489_2105083_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.9e-36	41.5
WP_069821746.1\|2105338_2106010_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-63	54.9
WP_069819972.1\|2106011_2106437_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_041079723.1\|2106429_2107146_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	5.5e-51	43.0
WP_002483953.1\|2107386_2107980_+	hypothetical protein	NA	NA	NA	NA
WP_002483954.1\|2108048_2108300_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_075340015.1\|2108517_2109579_-	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	8.7e-61	42.3
WP_002483956.1\|2110072_2110912_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-52	40.2

DBSCAN-SWA_7

2465517 : 2502140

Staphylococcus_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069820346.1\|2465517_2466132_-\|protease	protease	NA	NA	NA	NA
WP_126424531.1\|2466173_2466572_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_126424532.1\|2466612_2466957_-	DUF4260 domain-containing protein	NA	NA	NA	NA
WP_052463671.1\|2467160_2467496_+	DUF4870 domain-containing protein	A0A2H4J741	uncultured_Caudovirales_phage	3.2e-09	45.1
WP_075339907.1\|2467550_2467964_+	YxeA family protein	NA	NA	NA	NA
WP_126424533.1\|2468423_2468807_-	YxeA family protein	NA	NA	NA	NA
WP_069821903.1\|2469429_2469681_-	hypothetical protein	NA	NA	NA	NA
WP_081324769.1\|2469954_2470353_+	SdpI family protein	NA	NA	NA	NA
WP_069821904.1\|2470826_2471096_-	hypothetical protein	NA	NA	NA	NA
WP_081324770.1\|2472215_2472551_+	protein rep	NA	NA	NA	NA
WP_063489141.1\|2473274_2473703_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	2.0e-08	37.4
WP_041080315.1\|2473918_2474908_-	biotin synthase BioB	NA	NA	NA	NA
WP_001105987.1\|2476887_2477562_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	6.8e-128	99.6
WP_002483573.1\|2477752_2478493_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_081324747.1\|2478732_2479008_+	transcriptional regulator	NA	NA	NA	NA
WP_069821682.1\|2479080_2480505_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_069821681.1\|2480840_2481380_-	hypothetical protein	NA	NA	NA	NA
WP_041080313.1\|2481777_2483877_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	7.9e-114	36.4
WP_041080871.1\|2484252_2486244_-	catalase	A0A2K9L572	Tupanvirus	1.8e-144	48.6
WP_075340115.1\|2486659_2487232_-	hypothetical protein	NA	NA	NA	NA
WP_002484385.1\|2487598_2488207_-	recombinase family protein	M9Q1K0	Clostridium_phage	9.5e-20	35.9
WP_002483618.1\|2488457_2489471_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	3.3e-09	22.6
WP_041080868.1\|2489775_2490234_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041080866.1\|2490220_2491564_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_115338737.1\|2491655_2492330_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	6.4e-126	98.2
WP_002484388.1\|2492624_2492927_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_115338737.1\|2492988_2493663_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	6.4e-126	98.2
WP_080773305.1\|2494283_2494775_+	hypothetical protein	NA	NA	NA	NA
WP_069821790.1\|2494779_2495394_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_145437628.1\|2495715_2496399_+	hypothetical protein	NA	NA	NA	NA
WP_069821793.1\|2496535_2498011_-	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_041080859.1\|2498169_2498988_-	anti-sigma factor	NA	NA	NA	NA
WP_041080858.1\|2498977_2499547_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_040138587.1\|2499953_2500691_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_040138588.1\|2500708_2500945_+	hypothetical protein	NA	NA	NA	NA
WP_002510758.1\|2501172_2501268_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_001105999.1\|2501465_2502140_+\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	2.0e-127	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP031197

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

98 : 30612

Staphylococcus_phage(67.44%)

terminase,capsid,head,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145437645.1\|98_815_-	helix-turn-helix domain-containing protein	A0A0D4DD29	Staphylococcus_phage	5.8e-125	93.3
WP_053033175.1\|2205_2745_+	hypothetical protein	A0A2H4J1Z3	uncultured_Caudovirales_phage	6.0e-26	48.7
WP_145437646.1\|2782_3016_+	DUF2829 domain-containing protein	A0A0N9SKI8	Staphylococcus_phage	3.7e-33	81.8
WP_145437647.1\|3541_3838_+	chordopoxvirus fusion protein	NA	NA	NA	NA
WP_145437648.1\|3809_4037_+	DUF2483 family protein	H9A0Y6	Staphylococcus_phage	6.8e-32	93.3
WP_145437649.1\|4029_4653_+	single-stranded DNA-binding protein	A0A1W6JP43	Staphylococcus_phage	9.8e-113	97.6
WP_145437650.1\|4655_5261_+	single-stranded DNA-binding protein	A0A1W6JP64	Staphylococcus_phage	7.9e-59	95.5
WP_145437651.1\|5272_5962_+	DUF968 domain-containing protein	A0A2H4JE98	uncultured_Caudovirales_phage	8.8e-123	95.5
WP_145437652.1\|5939_6170_+	helix-turn-helix domain-containing protein	A0A1W6JPC4	Staphylococcus_phage	2.6e-31	89.5
WP_145437653.1\|6176_6392_+	helix-turn-helix domain-containing protein	Q4ZC20	Staphylococcus_virus	3.2e-15	60.0
WP_145437654.1\|6384_6894_+	AP2 domain-containing protein	A0A1W6JP61	Staphylococcus_phage	1.6e-44	59.5
WP_145437655.1\|6886_7672_+	replication protein	A0A1W6JP67	Staphylococcus_phage	7.8e-107	79.3
WP_145437656.1\|7684_8455_+	ATP-binding protein	A0A2H4JC46	uncultured_Caudovirales_phage	3.6e-141	98.8
WP_145437657.1\|8606_8831_+	DUF3269 family protein	H9A0S3	Staphylococcus_phage	2.2e-30	87.8
WP_145437658.1\|8841_9258_+	DUF1064 domain-containing protein	A1BU01	Staphylococcus_virus	3.0e-73	95.7
WP_145360727.1\|9244_9628_+	hypothetical protein	A0A2H4JFL4	uncultured_Caudovirales_phage	2.1e-41	70.2
WP_049391225.1\|9627_9819_+	hypothetical protein	A0A2H4J5U8	uncultured_Caudovirales_phage	1.2e-24	88.9
WP_145437659.1\|9819_10179_+	hypothetical protein	A0A2H4J5X6	uncultured_Caudovirales_phage	8.0e-59	95.0
WP_145437660.1\|10175_10619_+	DUF3310 domain-containing protein	A0A2H4JCG6	uncultured_Caudovirales_phage	3.1e-76	96.6
WP_145437661.1\|10621_11302_+	hypothetical protein	A0A141VTS7	Staphylococcus_phage	2.0e-127	96.0
WP_145437662.1\|11321_11627_+	hypothetical protein	H9A0T4	Staphylococcus_phage	7.3e-37	80.8
WP_145437663.1\|11613_11841_+	hypothetical protein	A0A2H4J7L0	uncultured_Caudovirales_phage	1.2e-28	84.0
WP_001830278.1\|11995_12232_+	hypothetical protein	I6TK19	Staphylococcus_virus	5.4e-40	100.0
WP_103416117.1\|12534_12852_+	hypothetical protein	A0A2H4J2H9	uncultured_Caudovirales_phage	2.1e-50	95.2
WP_002468977.1\|12900_13071_+	transcriptional activator RinB	A1BUB4	Staphylococcus_virus	2.1e-25	94.6
WP_145437664.1\|13072_13477_+	hypothetical protein	I6T7R9	Staphylococcus_virus	4.3e-61	89.6
WP_145437665.1\|13619_14039_+	transcriptional regulator	I1W651	Staphylococcus_phage	2.5e-56	79.1
WP_145437666.1\|14049_14316_+	hypothetical protein	NA	NA	NA	NA
WP_145437667.1\|14511_14958_+\|terminase	terminase small subunit	A0A1J0MFQ9	Staphylococcus_phage	2.9e-66	89.0
WP_145437668.1\|14944_16225_+\|terminase	PBSX family phage terminase large subunit	I1W649	Staphylococcus_phage	4.8e-215	85.0
WP_145437669.1\|16237_17770_+\|portal	phage portal protein	A0A1W6JNP8	Staphylococcus_phage	3.3e-247	83.7
WP_145437670.1\|17776_18727_+\|head	phage head morphogenesis protein	A0A1W6JNS6	Staphylococcus_phage	3.0e-145	80.1
WP_145437671.1\|18746_19289_+	hypothetical protein	NA	NA	NA	NA
WP_145437683.1\|19678_20284_+	DUF4355 domain-containing protein	A0A1W6JNT6	Staphylococcus_phage	1.8e-18	58.6
WP_145437672.1\|20299_21226_+\|capsid	phage major capsid protein	A0A1W6JNT3	Staphylococcus_phage	5.8e-154	88.6
WP_145437673.1\|21247_21517_+	hypothetical protein	A0A1W6JNX0	Staphylococcus_phage	1.3e-26	68.5
WP_145437674.1\|21518_21848_+\|head,tail	phage head-tail connector protein	A0A1W6JNR3	Staphylococcus_phage	1.1e-41	78.0
WP_145437675.1\|21844_22147_+	hypothetical protein	A0A1W6JNQ9	Staphylococcus_phage	1.1e-40	77.0
WP_145437676.1\|22146_22509_+	hypothetical protein	A0A1W6JNQ6	Staphylococcus_phage	3.5e-46	77.4
WP_145437677.1\|22508_22898_+	hypothetical protein	A0A1W6JNQ3	Staphylococcus_phage	5.8e-47	72.1
WP_145437678.1\|22941_23496_+\|tail	phage major tail protein, TP901-1 family	A0A1W6JNU0	Staphylococcus_phage	9.1e-86	88.6
WP_145437679.1\|23560_23920_+\|tail	phage tail protein	A0A1W6JNQ1	Staphylococcus_phage	2.9e-32	58.0
WP_145360719.1\|23961_24306_+	hypothetical protein	A0A1W6JNR9	Staphylococcus_phage	6.3e-45	78.9
WP_145437680.1\|24320_28172_+\|tail	phage tail protein	H9A0P1	Staphylococcus_phage	7.9e-11	35.7
WP_145437681.1\|28183_29140_+\|tail	phage tail family protein	A0A1W6JNU3	Staphylococcus_phage	5.3e-134	71.8
WP_145437682.1\|29151_30612_+	hypothetical protein	A0A1W6JNY1	Staphylococcus_phage	7.1e-154	70.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031196

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP031197

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection