CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP031268	Staphylococcus warneri strain 16A plasmid unnamed2	0 crisprs	NA	0
NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	0 crisprs	csa3	0
NZ_CP031270	Staphylococcus warneri strain 16A plasmid unnamed1, complete sequence	0 crisprs	cas14j	1
NZ_CP031269	Staphylococcus warneri strain 16A chromosome, complete genome	1 crisprs	csa3,WYL,DEDDh,cas3,DinG	8

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43570 : 81940

Lactobacillus_virus(33.33%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145392489.1\|43570_43993_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	5.2e-49	63.6
WP_151360030.1\|44092_45235_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	C1KFJ5	Lactobacillus_virus	2.1e-97	51.2
WP_151360031.1\|45732_47190_+	hypothetical protein	NA	NA	NA	NA
WP_151360032.1\|47276_47711_+	hypothetical protein	NA	NA	NA	NA
WP_151360033.1\|47734_48016_+	hypothetical protein	NA	NA	NA	NA
WP_151360034.1\|48039_48360_+	copper resistance protein NlpE	NA	NA	NA	NA
WP_151360035.1\|48387_48738_+	hypothetical protein	NA	NA	NA	NA
WP_151360036.1\|48865_49345_+	hypothetical protein	NA	NA	NA	NA
WP_151360037.1\|49316_50483_+	hypothetical protein	NA	NA	NA	NA
WP_151360038.1\|50500_52423_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2I7SAX5	Vibrio_phage	6.9e-32	26.6
WP_151360039.1\|52610_53033_+	hypothetical protein	NA	NA	NA	NA
WP_151360040.1\|53071_55081_+	hypothetical protein	NA	NA	NA	NA
WP_151360041.1\|55194_56406_+	hypothetical protein	NA	NA	NA	NA
WP_151360042.1\|56392_56614_+	hypothetical protein	NA	NA	NA	NA
WP_151360043.1\|56659_57028_+	hypothetical protein	NA	NA	NA	NA
WP_151360044.1\|57133_57367_+	hypothetical protein	NA	NA	NA	NA
WP_151360045.1\|57368_59501_+	hypothetical protein	NA	NA	NA	NA
WP_151360046.1\|59522_60428_+	hypothetical protein	NA	NA	NA	NA
WP_151360047.1\|60454_62587_+	hypothetical protein	NA	NA	NA	NA
WP_151360048.1\|62622_62958_-	hypothetical protein	NA	NA	NA	NA
WP_151360049.1\|63124_63895_+	hypothetical protein	NA	NA	NA	NA
WP_151360050.1\|63840_64596_+	CHAP domain-containing protein	A0A1S6L1H0	Staphylococcus_phage	1.1e-30	51.9
WP_151360051.1\|64613_64817_+	hypothetical protein	NA	NA	NA	NA
WP_151360052.1\|64867_65161_+	hypothetical protein	NA	NA	NA	NA
WP_151360053.1\|65147_65720_+	hypothetical protein	NA	NA	NA	NA
WP_151360054.1\|65781_66237_+	hypothetical protein	NA	NA	NA	NA
WP_151360055.1\|66332_67196_+	endonuclease	NA	NA	NA	NA
WP_151360056.1\|67211_67574_+	hypothetical protein	NA	NA	NA	NA
WP_151360057.1\|67602_68208_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_151360058.1\|68191_68710_+	hypothetical protein	NA	NA	NA	NA
WP_151360059.1\|68739_69468_+	hypothetical protein	NA	NA	NA	NA
WP_151360060.1\|69483_69840_+	hypothetical protein	NA	NA	NA	NA
WP_151360061.1\|69885_72378_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	3.2e-45	41.6
WP_151360062.1\|72391_73084_+	hypothetical protein	NA	NA	NA	NA
WP_151360063.1\|73097_74069_+	DUF1002 domain-containing protein	NA	NA	NA	NA
WP_151360064.1\|74171_74900_+	hypothetical protein	NA	NA	NA	NA
WP_151360065.1\|74900_75248_+	hypothetical protein	NA	NA	NA	NA
WP_151360066.1\|75320_76628_+	hypothetical protein	NA	NA	NA	NA
WP_151360067.1\|76644_77562_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_151360068.1\|77829_78888_+	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_151360069.1\|79045_79756_+	hypothetical protein	NA	NA	NA	NA
WP_151360070.1\|79869_80604_+	M50 family peptidase	NA	NA	NA	NA
WP_151360030.1\|80797_81940_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	C1KFJ5	Lactobacillus_virus	2.1e-97	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP031269

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031269_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031269_1

2242558-2242650

Orphan

Consensus_repeat	Method
TGCATTTTAATGCTTAGAGTTTCTTATGCATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031269_1

>merge|NZ_CP031269|1|2242558-2242650|CRISPRCasFinder
TGCATTTTAATGCTTAGAGTTTCTTATGCATGAGCTATGCTCAGGCACTCCTTAATCTAATGCATTTTAATGCTTAGAGTTTCTTATGCATGA

>NZ_CP031269|1|1|2242558-2242650|CRISPRCasFinder
TGCATTTTAATGCTTAGAGTTTCTTATGCATGA	GCTATGCTCAGGCACTCCTTAATCTAA
TGCATTTTAATGCTTAGAGTTTCTTATGCATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031269.1\|WP_002465582.1\|2224782_2225289_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226489
NZ_CP031269.1\|WP_002465555.1\|2245423_2246005_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP031269.1\|WP_002465572.1\|2233119_2236743_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP031269.1\|WP_002465563.1\|2236878_2240430_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP031269.1\|WP_002465576.1\|2225357_2226545_-\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP031269.1\|WP_002451216.1\|2241822_2242323_-\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP031269.1\|WP_002451214.1\|2243759_2244182_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP031269.1\|WP_002465579.1\|2249128_2249770_-\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|223975
NZ_CP031269.1\|WP_002465578.1\|2246075_2246603_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|226213
NZ_CP031269.1\|WP_151359968.1\|2247744_2249145_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP031269.1\|WP_107543694.1\|2226712_2227879_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP031269.1\|WP_002465546.1\|2245155_2245299_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NZ_CP031269.1\|WP_002451213.1\|2244362_2244911_-\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP031269.1\|WP_002451223.1\|2231666_2232137_-\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP031269.1\|WP_002465583.1\|2246602_2247349_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NZ_CP031269.1\|WP_002451222.1\|2232208_2232622_-\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP031269.1\|WP_002451217.1\|2241414_2241783_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP031269.1\|WP_002451225.1\|2228050_2229235_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP031269.1\|WP_031463892.1\|2247353_2247743_-\|Mini-ribonuclease-3	unknown	unknown	gnl\|CDD\|224850
NZ_CP031269.1\|WP_002451212.1\|2244921_2245104_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066

Protein	Function_ID	Function_description	E-value
NZ_CP031269.1\|WP_002465582.1\|2224782_2225289_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	1.82289e-36
NZ_CP031269.1\|WP_002465555.1\|2245423_2246005_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	8.38782e-21
NZ_CP031269.1\|WP_002465572.1\|2233119_2236743_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP031269.1\|WP_002465563.1\|2236878_2240430_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP031269.1\|WP_002465576.1\|2225357_2226545_-\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP031269.1\|WP_002451216.1\|2241822_2242323_-\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	9.07084e-72
NZ_CP031269.1\|WP_002451214.1\|2243759_2244182_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	1.17994e-97
NZ_CP031269.1\|WP_002465579.1\|2249128_2249770_-\|serine-O-acetyltransferase	gnl\|CDD\|223975	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism].	1.50525e-93
NZ_CP031269.1\|WP_002465578.1\|2246075_2246603_-\|NYN-domain-containing-protein	gnl\|CDD\|226213	COG3688, COG3688, Predicted RNA-binding protein containing a PIN domain [General function prediction only].	1.63894e-80
NZ_CP031269.1\|WP_151359968.1\|2247744_2249145_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP031269.1\|WP_107543694.1\|2226712_2227879_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NZ_CP031269.1\|WP_002465546.1\|2245155_2245299_-\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	1.84723e-13
NZ_CP031269.1\|WP_002451213.1\|2244362_2244911_-\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.09504e-86
NZ_CP031269.1\|WP_002451223.1\|2231666_2232137_-\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	1.88667e-112
NZ_CP031269.1\|WP_002465583.1\|2246602_2247349_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	8.69202e-88
NZ_CP031269.1\|WP_002451222.1\|2232208_2232622_-\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	7.89944e-85
NZ_CP031269.1\|WP_002451217.1\|2241414_2241783_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	4.12734e-48
NZ_CP031269.1\|WP_002451225.1\|2228050_2229235_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP031269.1\|WP_031463892.1\|2247353_2247743_-\|Mini-ribonuclease-3	gnl\|CDD\|224850	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and repair].	2.74253e-57
NZ_CP031269.1\|WP_002451212.1\|2244921_2245104_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	1.16587e-12

>NZ_CP031269.1|WP_002451216.1|2241822_2242323_-|50S-ribosomal-protein-L10
MSAIIEAKKQLVDTIADQLKNSVSTVIVDYRGLTVAEVTELRKQLREAGVEYKVYKNTMVRRAAEKAGIEGLDEFLTGPTAIATSTEDVVAPAKVIAGFAKEHEALEVKSGVMEGNVISAEEVKTVGSLPSHDGLVSMLLSVLQAPVRNFAYAVKAVGEQKEESAE
>NZ_CP031269.1|WP_002451217.1|2241414_2241783_-|50S-ribosomal-protein-L7/L12
MANQEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAAAGAAGGGEAAAEKTEFDVELTSAGSSKIKVVKAVKEATGLGLKDAKELVDGAPKVIKEAMPKEDAEKLKEQLEEVGATVELK
>NZ_CP031269.1|WP_002465563.1|2236878_2240430_-|DNA-directed-RNA-polymerase-subunit-beta
MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPSVYFNEKLDKNGRENYDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDSEYLRNTLEKDGTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNSETGEIVVEEGTVLDRRKLDEIMDVLEANANSEVFELEGTVIDEPVEIQSIKVYVPNDDEGRTTTVIGNALPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLDTNAITDQIDYLTADEEDSYVVAQANSRLDENGRFIDDEVVCRFRGNNTVMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAAITANHRGRVEHVESNEILVRRLVEQDGQEYEGELDRYPLAKFKRSNSGTCYNQRPIVAAGDIVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDERGIVYVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPNVPESFRVLMKELQSLGLDVKVMDEQDNEIEMADIEDEDVTERKVDLQQKDAPESQKETTD
>NZ_CP031269.1|WP_002465572.1|2233119_2236743_-|DNA-directed-RNA-polymerase-subunit-beta'
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECSCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIRDLLSEIDLDEELKILRDELESATGQRLTRAIKRLEVVESFRNSGNDPAWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEEVIVEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERTDAVNTGTIYNDTNEVLKAYANGYVHLHTRIGVHASSFNNPTFTEEQNKKILATSVGKIIFNEIIPDSFAYINEPTQTNLEGTTPDKYFVDPTELGEGGLKEFFETKELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGITVGVSDIVVLPDKKDILDEHEKLVERVTKQFNRGLITEEERYNAVVEIWTDAKDQIQGELMQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEGRYSKETIRHPETDEVIIRPDELITAEIAKKITDAGIEQMYIRSAFTCNTRHGVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGENETRSYLASGTSRLKVEVGQSVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKLLPGSLVDIHNFTDANRDAFKERKRPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVQYDKNVAPVASSEEEVEVTE
>NZ_CP031269.1|WP_002451222.1|2232208_2232622_-|30S-ribosomal-protein-S12
MPTINQLVRKPRQSKSKKSDSPALNRGFNSKKKQFTELNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN
>NZ_CP031269.1|WP_002451223.1|2231666_2232137_-|30S-ribosomal-protein-S7
MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILYSAFDLVEERSGRQAIEVFEEAIENIMPVLEVKARRVGGSNYQVPVEVRPERRSTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW
>NZ_CP031269.1|WP_002451225.1|2228050_2229235_-|elongation-factor-Tu
MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDTVAQSYDMIDNAPEEKERGITINTAHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDEKYEEKILELMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVQLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIHE
>NZ_CP031269.1|WP_107543694.1|2226712_2227879_+|amidohydrolase
MFDWFQLASKKEKRMIQLRRYLHQYPELSFEEKQTHDYIVNQLSQLSCDIQTPVGRNGIKATFKGKGEGPTIAFRADFDALPVQELNDVPYKSKNDGCMHACGHDGHTAILLGVAEIVNEHRHLLKGNVVFIFQYGEEIMPGGSQEMINDGCLQDVDKIYGTHLWSGYPTGTIYSRPGPIMASPDEFSITIQGRGGHGAKPQETIDPIVIMAEFILSAQKIVSRSIDPVKQAVLTFGMVQAGSSDSVIPDSAFCKGTVRTFDTNLQNHIKTKMDKLLQGLAVANDITYDFNYIKGYLPLHNHQQAYEVVKQAANDMHLRFNESDLMMIGEDFSHYLKVRPGAFFLTGCGNQDKNITAPHHNPYFDIDESSFKYAASEFLKILELENVF
>NZ_CP031269.1|WP_002465576.1|2225357_2226545_-|glycine-C-acetyltransferase
MVQSLHDFLNENINYLKENGLYNEIDSIEGANGPEIKIDGKTYVNLSSNNYLGLATNEDLKEAAKAAIDSHGVGAGAVRSINGTLDLHDELEETLAKFKGTEAAIAYQSGFNCNMAAISAVMNKNDAILSDELNHASIIDGCRLSKAKIIRVNHSDMDDLRAKAKEAVESGQYNKVMYITDGVFSMDGDVAKLPEIVKIAEEFGLLTYVDDAHGSGVMGKGAGTVKHFGLQDKIDFQIGTLSKAIGVVGGYVAGTKELIDWLKAQSRPFLFSTSLAPGDTKAITEAVKKLMASTELHDQLWENAQYLKDGLAKLGFNTGESETPITPVIIGDEKDTQVFSKRLKEEGIYVKSIVFPTVPKGTGRVRNMPTAAHTKEMLDKAIEAYEKVGKELNII
>NZ_CP031269.1|WP_002465582.1|2224782_2225289_-|GNAT-family-N-acetyltransferase
MGEIRQLTYDDESQFLKYINEWYENEEKIVPGNIDFKKYTGFKEMVDHINKPKPREDWVETSTMFYFKDEAIVGAVNIRYQLNESLTRIGGHVGYGVASSQRGKGYAKEMLGHALDILKTKQVKYVLMTCNPKNFSSQKVILYYGGYEIEPYIKKNGAPVKRYHIPIN
>NZ_CP031269.1|WP_002451214.1|2243759_2244182_-|50S-ribosomal-protein-L11
MAKKVEKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQEQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGVEKGSGEPNKNKVASVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGITVE
>NZ_CP031269.1|WP_002451213.1|2244362_2244911_-|transcription-termination/antitermination-protein-NusG
MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFPGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMGLKEKTIDVELDVGEQVRIKSGPFANQVGEVQEIEAEKFKLTVLVDMFGRETPVEVEFDQIEKL
>NZ_CP031269.1|WP_002451212.1|2244921_2245104_-|preprotein-translocase-subunit-SecE
MAKKESFFQGVKSEMEKTSWPTKEELFKYTVIVVSTVIFFLVFFYALDLGITALKNLLIG
>NZ_CP031269.1|WP_002465546.1|2245155_2245299_-|50S-ribosomal-protein-L33
MKKVPLNCEECGNRNYHVPKKEGSAVRLTLKKYCSRCNAHTVHKESK
>NZ_CP031269.1|WP_002465555.1|2245423_2246005_-|sigma-70-family-RNA-polymerase-sigma-factor
MTHKNNNLKQQLLLSKSQQLDIELKAILQQFNSFIMRRINYISQNDFEKDDLYQEVLIKIYLALERHHFQYDDSFIKYISRLIKSVKCDYYRRHYTQQKRYTNVVNDAVVEYQTNLLNRDRVEREILTCEAIKLLNTACEKLTKQEREVFEFYSKGYKPKEIAHLLGIKDKVVYNAIQRCKMKIRHHLEYKLK
>NZ_CP031269.1|WP_002465578.1|2246075_2246603_-|NYN-domain-containing-protein
MKERYLIIDGYNMIGQSPTLSKIAKENLEEAREQLIDAIANYNAVIADEIVCVFDAYEQSGIEREYMYHGVKTVFTKEKETADSFIERYVYELYDKHTTHITVVTSDMSEQHAIFGSGAYRVSSREMWRDLRENQITVSKSLEDITETKPRTRIPLSEDILAEFEKIRRGNHKKD
>NZ_CP031269.1|WP_002465583.1|2246602_2247349_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MEDIVIVGRHAVKEAIISGHSINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDFLSTAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNNGFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGDK
>NZ_CP031269.1|WP_031463892.1|2247353_2247743_-|Mini-ribonuclease-3
MNIKLLNPLTLAYMGDAVLDQHVRKYIVLKLRSKPNRLHQMSKLYVSAKSQAQTLETLIEEPWFTEEEMDILKRGRNAKSYTKAKNTDVQTYRKSSALEAVIGFLYLEHREERLKVLLDKIIEIVNERS
>NZ_CP031269.1|WP_151359968.1|2247744_2249145_-|cysteine--tRNA-ligase
MITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYEVIYVSNFTDVDDKLIKRSKELNESVPEIADKYIKAFYEDVGALNVKKATSNPRVMNHMDEIIDFIKKLVDEGYAYESNGDVYFRTRQFKDYGKLSHQSIDYLKVGARIEAGDQKEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPHHENEIAQSEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEIDPDVLRFFMISVHYRSPINYNLELVSAAKSGLERIRNSYQLIEEREAIATDIDNQEEYINQIDQILENFEAVMDDDFNTANAVTAWYDLVKLANRYVLENVTSSKVIAQFKEVYQIFSDVLGVPLKGNQQDDLLDEEIEQLIEERNEARKNKDFARADEIRDHLKEQNIILEDTPQGVRFKRG
>NZ_CP031269.1|WP_002465579.1|2249128_2249770_-|serine-O-acetyltransferase
MLRRMRDDIKMVFEQDPAARSTIEVVTTYAGLHAVWSHLIAHKLYNNQRYVAARAISQISRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKEKGKRHPDIGDNVLIAAGSKVLGNIQISSNVNIGANSVVLQSVPSYSTVVGIPGHIVKQDGKRIGKTFDHRNLPDPLYEQIKHLERQLEKTRNGEIQDDYII

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

884478 : 893465

Staphylococcus_phage(72.73%)

integrase

attL 882980:882994|attR 898535:898549

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
882980:882994	attL	NA	NA	NA	NA
WP_002451577.1\|884478_884766_+	co-chaperone GroES	A0A221S4A5	uncultured_virus	6.2e-14	43.0
WP_002466275.1\|884819_886442_+	chaperonin GroEL	A0A240F779	uncultured_virus	7.6e-157	54.5
WP_031464163.1\|886510_887680_-\|integrase	site-specific integrase	A0A1W6JPB2	Staphylococcus_phage	8.3e-214	95.4
WP_031464164.1\|887688_888282_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_031464165.1\|888437_888599_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046464260.1\|888602_889244_+	Bro-N domain-containing protein	A0A2H4JB17	uncultured_Caudovirales_phage	1.1e-103	88.7
WP_031464166.1\|889257_889575_+	helix-turn-helix domain-containing protein	A0A1W6JPE8	Staphylococcus_phage	9.2e-51	99.0
WP_031464167.1\|889711_889918_+	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	5.8e-30	94.1
WP_031464168.1\|889919_890267_+	hypothetical protein	A0A1W6JPD3	Staphylococcus_phage	6.8e-39	75.7
WP_031464169.1\|890266_890557_+	DUF1474 family protein	A0A1W6JPG5	Staphylococcus_phage	3.7e-38	80.4
WP_031464170.1\|890619_892221_+	hypothetical protein	A0A1W6JPF4	Staphylococcus_phage	5.1e-246	77.6
WP_031464171.1\|892399_893203_+	bifunctional DNA primase/polymerase	A0A1W6JPC1	Staphylococcus_phage	3.1e-127	80.1
WP_151359864.1\|893189_893465_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	4.6e-30	66.7
898535:898549	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1022299 : 1030902

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002466826.1\|1022299_1023709_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.9e-172	63.0
WP_002466818.1\|1023698_1024712_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.4e-102	55.9
WP_002452125.1\|1024695_1024935_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	8.8e-38	90.1
WP_002466823.1\|1024995_1025469_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	8.1e-51	62.4
WP_002466801.1\|1025455_1026229_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	4.0e-108	76.5
WP_002466245.1\|1026704_1028297_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	9.7e-290	90.4
WP_015364877.1\|1028674_1029874_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.3e-195	87.1
WP_002466230.1\|1029993_1030902_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.3e-109	80.2

DBSCAN-SWA_3

1035162 : 1047553

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002466234.1\|1035162_1035651_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	7.1e-34	52.0
WP_015364880.1\|1035843_1036068_+	hypothetical protein	NA	NA	NA	NA
WP_015364881.1\|1036330_1037185_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNR1	Staphylococcus_phage	1.3e-38	42.3
WP_002466241.1\|1037507_1039007_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	4.7e-20	82.5
WP_002466226.1\|1039498_1040542_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.1e-137	66.8
WP_002466238.1\|1040548_1041181_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.8e-83	73.8
WP_015364882.1\|1041195_1042377_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.3e-178	77.4
WP_002466232.1\|1042389_1042848_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-61	86.7
WP_002466244.1\|1043119_1044121_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	7.7e-144	78.4
WP_002466222.1\|1044353_1045181_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002466236.1\|1045584_1045986_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002466231.1\|1046039_1046603_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	7.6e-72	70.3
WP_151359875.1\|1046599_1047553_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	5.1e-68	83.3

DBSCAN-SWA_4

1183075 : 1192099

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002467511.1\|1183075_1184080_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.0e-06	30.8
WP_002467507.1\|1184081_1185107_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002451802.1\|1185128_1186268_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-85	46.1
WP_002451803.1\|1186283_1186544_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.3e-06	42.6
WP_019235939.1\|1186882_1189162_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	34.1
WP_151359882.1\|1189283_1191566_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	9.6e-65	29.4
WP_002467522.1\|1191580_1192099_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	7.3e-29	45.8

DBSCAN-SWA_5

1654728 : 1725173

Staphylococcus_phage(58.33%)

portal,tail,integrase,tRNA,protease,head,terminase

attL 1677335:1677356|attR 1725235:1725256

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015365100.1\|1654728_1657479_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	3.1e-86	26.8
WP_151359913.1\|1657706_1658360_-	DivIVA domain-containing protein	NA	NA	NA	NA
WP_037539754.1\|1658383_1659154_-	RNA-binding protein	NA	NA	NA	NA
WP_002450621.1\|1659293_1659587_-	YggT family protein	NA	NA	NA	NA
WP_031463945.1\|1659598_1660192_-	cell division protein SepF	NA	NA	NA	NA
WP_002465498.1\|1660194_1660866_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002465496.1\|1660865_1661669_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_002465489.1\|1661907_1663083_-	cell division protein FtsZ	NA	NA	NA	NA
WP_002465486.1\|1663115_1664513_-	cell division protein FtsA	NA	NA	NA	NA
WP_002465497.1\|1666029_1667379_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_002465490.1\|1667380_1668346_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_002465488.1\|1668530_1670771_-	penicillin-binding protein	NA	NA	NA	NA
WP_002450631.1\|1670751_1671153_-	cell division protein FtsL	NA	NA	NA	NA
WP_002465493.1\|1671166_1672102_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_002450633.1\|1672117_1672549_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_002465501.1\|1672692_1674306_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA
WP_015365103.1\|1674522_1674963_+	N-acetyltransferase	NA	NA	NA	NA
WP_002466011.1\|1675077_1675764_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_002466004.1\|1675879_1676014_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_015365104.1\|1676065_1676200_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_015365104.1\|1676252_1676387_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_015365104.1\|1676430_1676565_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_002450638.1\|1676608_1676743_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_151359914.1\|1676778_1676913_-	beta-class phenol-soluble modulin	NA	NA	NA	NA
1677335:1677356	attL	NA	NA	NA	NA
WP_151359915.1\|1677688_1678312_-	hypothetical protein	A0A1W6JNN3	Staphylococcus_phage	5.5e-39	45.5
WP_151359916.1\|1678398_1678776_-	hypothetical protein	NA	NA	NA	NA
WP_151359917.1\|1678738_1680640_-	N-6 DNA methylase	A0A1W6JNK1	Staphylococcus_phage	0.0e+00	93.5
WP_151359918.1\|1684108_1684360_-	PTS mannose transporter subunit IID	A0A1W6JPX4	Staphylococcus_phage	9.9e-40	97.6
WP_151359919.1\|1684399_1684951_-	hypothetical protein	A0A2H4J1X0	uncultured_Caudovirales_phage	9.9e-101	99.5
WP_151359920.1\|1684950_1685448_-	hypothetical protein	A0A2H4J3H3	uncultured_Caudovirales_phage	1.5e-87	95.2
WP_015365110.1\|1685492_1685906_-	hypothetical protein	U3PG18	Staphylococcus_phage	3.6e-39	54.0
WP_058660226.1\|1685915_1686239_-	hypothetical protein	A0A2H4J862	uncultured_Caudovirales_phage	8.3e-07	31.8
WP_081045373.1\|1686279_1686420_-	XkdX family protein	NA	NA	NA	NA
WP_131541157.1\|1686403_1686760_-	hypothetical protein	A0A060AFE4	Staphylococcus_phage	4.1e-23	41.3
WP_151359921.1\|1686773_1688315_-	DUF2479 domain-containing protein	A0A060AKT8	Staphylococcus_phage	2.4e-80	43.0
WP_095324765.1\|1688314_1690999_-	peptidase G2	A0A060AKF8	Staphylococcus_phage	7.3e-282	63.3
WP_095324764.1\|1691010_1691451_-	hypothetical protein	Q4ZCD3	Staphylococcus_virus	2.1e-16	41.5
WP_095324762.1\|1693044_1693881_-\|tail	phage tail family protein	A0A2H4J7E0	uncultured_Caudovirales_phage	2.0e-81	55.7
WP_131541163.1\|1700421_1700772_-	hypothetical protein	A0A0K1LKJ0	Staphylococcus_phage	1.3e-29	61.2
WP_095324759.1\|1700812_1701043_-	fibronectin type III domain-containing protein	A0A220BYP1	Staphylococcus_phage	1.7e-09	56.9
WP_015365123.1\|1701056_1701722_-\|tail	phage major tail protein	A0A2I6PE59	Staphylococcus_phage	5.4e-85	76.6
WP_015365124.1\|1701760_1702156_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	6.5e-46	69.5
WP_151359922.1\|1702152_1702560_-	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	8.5e-41	61.1
WP_151359923.1\|1702556_1702889_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	1.0e-39	68.8
WP_015365127.1\|1702897_1703176_-\|head,tail	phage gp6-like head-tail connector protein	R4WAL3	Staphylococcus_phage	2.1e-35	77.2
WP_095324754.1\|1704423_1705197_-\|protease	Clp protease ClpP	M1TAZ4	Staphylococcus_phage	2.0e-115	82.1
WP_095324753.1\|1705147_1706419_-\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	2.9e-212	87.4
WP_151359980.1\|1706423_1708115_-\|terminase	terminase large subunit	A0A2I6PDP8	Staphylococcus_phage	0.0e+00	93.4
WP_058660235.1\|1708104_1708410_-\|terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	4.4e-42	86.1
WP_131513095.1\|1708533_1708848_-	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	2.3e-46	82.7
WP_131541166.1\|1708977_1709424_-	transcriptional regulator	A0A2H4JC45	uncultured_Caudovirales_phage	8.7e-71	87.2
WP_151359924.1\|1709434_1709638_-	helix-turn-helix transcriptional regulator	A0A2H4JCF9	uncultured_Caudovirales_phage	1.5e-09	58.2
WP_151359925.1\|1709814_1710048_-	hypothetical protein	H9A0M4	Staphylococcus_phage	3.9e-14	62.7
WP_107529256.1\|1710044_1710221_-	transcriptional regulator	A0A2H4J9B5	uncultured_Caudovirales_phage	2.9e-14	76.0
WP_151359926.1\|1710471_1710624_-	DUF1381 domain-containing protein	A0A2H4J208	uncultured_Caudovirales_phage	2.0e-11	72.0
WP_126567588.1\|1710642_1710879_-	hypothetical protein	A0A1J0MFS6	Staphylococcus_phage	3.0e-06	67.6
WP_151359927.1\|1710951_1711272_-	hypothetical protein	I6SB84	Staphylococcus_virus	1.0e-49	90.6
WP_151359928.1\|1711264_1711456_-	hypothetical protein	H9A103	Staphylococcus_phage	7.0e-22	89.8
WP_104681645.1\|1711455_1711815_-	hypothetical protein	W5R8P0	Staphylococcus_phage	2.7e-38	66.4
WP_151359929.1\|1711814_1712189_-	hypothetical protein	A0A1W6JPS9	Staphylococcus_phage	1.3e-16	84.6
WP_151359930.1\|1712201_1712438_-	hypothetical protein	A0A1W6JPP2	Staphylococcus_phage	2.4e-35	92.3
WP_058714306.1\|1712427_1712790_-	nuclease	A0A1W6JPT5	Staphylococcus_phage	6.4e-64	98.3
WP_151359931.1\|1712786_1712987_-	hypothetical protein	A0A1W6JPQ4	Staphylococcus_phage	7.6e-27	92.4
WP_107533258.1\|1712976_1713201_-	hypothetical protein	NA	NA	NA	NA
WP_151359932.1\|1713178_1713445_-	DUF3310 domain-containing protein	A0A2H4J205	uncultured_Caudovirales_phage	8.3e-37	93.7
WP_151359933.1\|1713451_1713634_-	hypothetical protein	A0A2H4J2W7	uncultured_Caudovirales_phage	2.4e-27	95.0
WP_151359934.1\|1713638_1713896_-	hypothetical protein	NA	NA	NA	NA
WP_107533192.1\|1713897_1714248_-	helix-turn-helix transcriptional regulator	A0A2H4IYG5	uncultured_Caudovirales_phage	1.5e-25	51.7
WP_058714312.1\|1714418_1714826_-	RusA family crossover junction endodeoxyribonuclease	A0A2H4J8S2	uncultured_Caudovirales_phage	2.1e-63	85.2
WP_151359935.1\|1714835_1715063_-	DUF3269 family protein	A0A2H4J9V2	uncultured_Caudovirales_phage	1.0e-35	97.3
WP_107569208.1\|1715031_1715262_-	hypothetical protein	A0A2H4J6X0	uncultured_Caudovirales_phage	8.5e-38	100.0
WP_151359936.1\|1715258_1716494_-	AAA family ATPase	A0A2H4J996	uncultured_Caudovirales_phage	3.4e-226	99.0
WP_151359937.1\|1716486_1716846_-	hypothetical protein	A0A141VTR9	Staphylococcus_phage	1.2e-57	94.1
WP_151359938.1\|1716845_1717631_-	DnaD domain protein	I6SB74	Staphylococcus_virus	1.4e-100	80.5
WP_046467484.1\|1717608_1718298_-	hypothetical protein	A0A2H4J4Z9	uncultured_Caudovirales_phage	3.7e-121	92.0
WP_151359939.1\|1718311_1718737_-	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	3.6e-50	72.4
WP_151359940.1\|1718736_1719372_-	single-stranded DNA-binding protein	A0A059T7J7	Staphylococcus_phage	2.8e-75	67.1
WP_151359941.1\|1719364_1719619_-	hypothetical protein	A0A0D4DCH8	Staphylococcus_phage	1.5e-24	61.9
WP_151359942.1\|1719615_1719822_-	hypothetical protein	A0A2H4J2X8	uncultured_Caudovirales_phage	1.9e-25	91.0
WP_126474890.1\|1719908_1720079_-	DUF1270 family protein	A0A1W6JPM1	Staphylococcus_phage	3.4e-20	98.2
WP_151359943.1\|1720100_1720346_-	hypothetical protein	A0A1W6JPQ6	Staphylococcus_phage	6.2e-39	96.3
WP_015365164.1\|1720348_1720666_-	DUF771 domain-containing protein	A0A2H4JAF6	uncultured_Caudovirales_phage	8.1e-55	100.0
WP_095324727.1\|1720723_1720954_+	hypothetical protein	A0A1W6JPQ0	Staphylococcus_phage	4.6e-36	100.0
WP_151359944.1\|1721140_1721896_-	Rha family transcriptional regulator	I6TJS0	Staphylococcus_virus	5.5e-134	97.6
WP_046464318.1\|1721909_1722170_-	helix-turn-helix transcriptional regulator	B7T095	Staphylococcus_virus	4.4e-35	86.6
WP_046464317.1\|1722361_1723000_+	LexA family transcriptional regulator	U3PBN8	Staphylococcus_phage	2.6e-105	87.3
WP_049416385.1\|1723233_1723422_+	hypothetical protein	NA	NA	NA	NA
WP_151359945.1\|1724147_1725173_+\|integrase	site-specific integrase	A0A2H4JB04	uncultured_Caudovirales_phage	2.6e-195	99.4
1725235:1725256	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1797683 : 1806153

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002465399.1\|1797683_1798250_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.7e-29	40.3
WP_031463941.1\|1798252_1799281_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.9e-67	44.7
WP_002465406.1\|1799273_1800758_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-46	32.8
WP_002465405.1\|1800736_1802926_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.8e-138	38.8
WP_002465411.1\|1802918_1803590_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_002450716.1\|1803591_1803852_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002465403.1\|1803851_1804556_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.5e-48	43.8
WP_078103911.1\|1804556_1805723_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002465404.1\|1805670_1806153_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.4e-20	42.7

DBSCAN-SWA_7

2060084 : 2067285

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002466645.1\|2060084_2061233_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	3.2e-24	39.6
WP_151359959.1\|2061216_2061810_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.4e-36	39.9
WP_002466644.1\|2062133_2062805_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.7e-65	55.6
WP_107543820.1\|2062806_2063226_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	3.7e-07	26.1
WP_002466643.1\|2063225_2063939_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	6.5e-52	42.7
WP_015365295.1\|2064041_2064641_+	hypothetical protein	NA	NA	NA	NA
WP_107543664.1\|2065106_2066213_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	1.4e-61	41.0
WP_002467169.1\|2066442_2067285_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.6e-52	41.7

DBSCAN-SWA_8

2397081 : 2405669

uncultured_Caudovirales_phage(45.45%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002467104.1\|2397081_2397678_-	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	1.1e-36	43.2
WP_031464129.1\|2397696_2398224_-	hypothetical protein	A0A2H4JD56	uncultured_Caudovirales_phage	1.1e-08	28.3
WP_002467111.1\|2398238_2398583_-	hypothetical protein	A0A1W6JQF3	Staphylococcus_phage	1.9e-33	64.0
WP_002467115.1\|2398868_2399510_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	1.2e-94	78.9
WP_002467110.1\|2399511_2399889_-	hypothetical protein	Q4ZE71	Staphylococcus_phage	6.9e-53	79.5
WP_002467109.1\|2399881_2400235_-	hypothetical protein	A0A2H4JBD4	uncultured_Caudovirales_phage	4.2e-44	69.3
WP_002467121.1\|2400477_2401845_-	DNA primase	A0A2H4JBE3	uncultured_Caudovirales_phage	2.1e-248	92.3
WP_002467116.1\|2401856_2402726_-	hypothetical protein	A0A2H4JEH3	uncultured_Caudovirales_phage	4.6e-161	91.7
WP_002467122.1\|2402814_2403153_-	hypothetical protein	NA	NA	NA	NA
WP_002467105.1\|2403154_2403361_-	hypothetical protein	NA	NA	NA	NA
WP_031464128.1\|2403530_2403803_-	hypothetical protein	Q4ZE77	Staphylococcus_phage	9.8e-17	43.3
WP_002467106.1\|2403841_2404042_-	hypothetical protein	NA	NA	NA	NA
WP_050969315.1\|2404147_2405068_+	helix-turn-helix transcriptional regulator	Q4ZC20	Staphylococcus_virus	3.7e-07	45.3
WP_002466547.1\|2405435_2405669_+	hypothetical protein	Q4ZCB8	Staphylococcus_virus	5.2e-27	72.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031270

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP031269

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection