CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031274	Staphylococcus chromogenes strain 17A chromosome, complete genome	2 crisprs	cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	1	19	7	0
NZ_CP031273	Staphylococcus chromogenes strain 17A plasmid unnamed1	0 crisprs	NA	0	0	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031274_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031274_1

147724-148950

TypeII

Consensus_repeat	Method
GGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCGA	PILER-CR
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CRISPRCasFinder
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CRT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	PILER-CR
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	PILER-CR

18 spacers

cas9,cas1,cas2

The CRISPR arrays of NZ_CP031274_1

>merge|NZ_CP031274|1|147724-148950|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCGACAAGCACAAATGGTTGACCATATTATCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCTATCATAACGCTCTTTCCACTGCCAGGCGGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTTTGAGTCAAATGGCGTAGCGTTTAGAAGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAAAGTCGTGTATCAATTGACGCAATCCAACGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAGATTGTTAAACGACGAATTGGTTTAACTGAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAGCTCTACACCCTCAACAACCGCTGTTGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAAGAGCGGTTGTTTTACTTTTCTTACTACCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATAATCATTCTTCCTAGTACGTCTGATTGAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATATGACTCAAAGGTACACCCTCAATCATCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTTATGGATTACGTGGCTTTTGTTGAGGGGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTAAGGAGGGGATATTGAATGAAAAGAACAAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCTGCATCAGGTGAAGATTTAGGACAAGTAAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTCGGTGGTTACATTATGATTGGTTTGCCGAAAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCACCATCGCCATCACCCAATGAACTCATTAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTACCGTCTTTTAATTCCTCTATACGGTTACGTTTTAGTACTCTGTAATTTTAGGTATAATTGATTCACATTGGTATTGCGGGTGGCGGTCAGGTGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATAAGGTTGACGCAGCACCCTTACAATACGGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTTAACGTTTTAAAAGCGACACTTGAACGCTGTTTTAGTACTCTGTAATTTAGGTATTTTTAGCATG

>NZ_CP031274|1|1|147724-147892|PILER-CR
GGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCGA	CAAGCACAAATGGTTGACCATATTAT
CGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCTA	TCATAACGCTCTTTCCACTGCCAGGC
GGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTTTGAGTCAAATGGCGTAGCGTTTAGAAGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAAAGTCGTGTATCAATTGACGCAATCCAACGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	GATTGTTAAACGACGAATTGGTTTAACTGA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	GCTCTACACCCTCAACAACCGCTGTTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	AGAGCGGTTGTTTTACTTTTCTTACTACC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATAATCATTCTTCCTAGTACGTCTGATTGAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATATGACTCAAAGGTACACCCTCAATCATCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGATTACGTGGCTTTTGTTGAGGGGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TAAGGAGGGGATATTGAATGAAAAGAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CTGCATCAGGTGAAGATTTAGGACAAGTAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TCGGTGGTTACATTATGATTGGTTTGCCGAAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CACCATCGCCATCACCCAATGAACTCATTA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TACCGTCTTTTAATTCCTCTATACGGTTAC
GTTTTAGTACTCTGTAATTTTAGGTATAATTGATTC	ACATTGGTATTGCGGGTGGCGGTCAGGTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATAAGGTTGACGCAGCACCCTTACAATACG


>NZ_CP031274|1|1|147725-148884|CRISPRCasFinder
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CGACAAGCACAAATGGTTGACCATATTATC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CTATCATAACGCTCTTTCCACTGCCAGGCG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTTGAGTCAAATGGCGTAGCGTTTAGAAGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAAGTCGTGTATCAATTGACGCAATCCAAC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AGATTGTTAAACGACGAATTGGTTTAACTGA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AGCTCTACACCCTCAACAACCGCTGTTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGAGCGGTTGTTTTACTTTTCTTACTACC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATAATCATTCTTCCTAGTACGTCTGATTGA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATATGACTCAAAGGTACACCCTCAATCATC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGATTACGTGGCTTTTGTTGAGGGGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TAAGGAGGGGATATTGAATGAAAAGAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CTGCATCAGGTGAAGATTTAGGACAAGTAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TCGGTGGTTACATTATGATTGGTTTGCCGAAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CACCATCGCCATCACCCAATGAACTCATTA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TACCGTCTTTTAATTCCTCTATACGGTTAC
GTTTTAGTACTCTGTAATTTTAGGTATAATTGATTC	ACATTGGTATTGCGGGTGGCGGTCAGGTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATAAGGTTGACGCAGCACCCTTACAATACG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC

>NZ_CP031274|1|1|147725-148950|CRT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CGACAAGCACAAATGGTTGACCATATTATC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CTATCATAACGCTCTTTCCACTGCCAGGCG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTTGAGTCAAATGGCGTAGCGTTTAGAAGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAAGTCGTGTATCAATTGACGCAATCCAAC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AGATTGTTAAACGACGAATTGGTTTAACTGA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AGCTCTACACCCTCAACAACCGCTGTTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGAGCGGTTGTTTTACTTTTCTTACTACC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATAATCATTCTTCCTAGTACGTCTGATTGA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATATGACTCAAAGGTACACCCTCAATCATC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGATTACGTGGCTTTTGTTGAGGGGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TAAGGAGGGGATATTGAATGAAAAGAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CTGCATCAGGTGAAGATTTAGGACAAGTAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TCGGTGGTTACATTATGATTGGTTTGCCGAAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CACCATCGCCATCACCCAATGAACTCATTA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TACCGTCTTTTAATTCCTCTATACGGTTAC
GTTTTAGTACTCTGTAATTTTAGGTATAATTGATTC	ACATTGGTATTGCGGGTGGCGGTCAGGTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATAAGGTTGACGCAGCACCCTTACAATACG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTAACGTTTTAAAAGCGACACTTGAACGCT
GTTTTAGTACTCTGTAATTTAGGTATTTTTAGCATG

>NZ_CP031274|1|2|147989-148223|PILER-CR
	CAAGCACAAATGGTTGACCATATTAT
CGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCTA	TCATAACGCTCTTTCCACTGCCAGGC
GGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTTTGAGTCAAATGGCGTAGCGTTTAGAAGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAAAGTCGTGTATCAATTGACGCAATCCAACGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	GATTGTTAAACGACGAATTGGTTTAACTGA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	GCTCTACACCCTCAACAACCGCTGTTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	AGAGCGGTTGTTTTACTTTTCTTACTACC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATAATCATTCTTCCTAGTACGTCTGATTGAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATATGACTCAAAGGTACACCCTCAATCATCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGATTACGTGGCTTTTGTTGAGGGGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TAAGGAGGGGATATTGAATGAAAAGAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CTGCATCAGGTGAAGATTTAGGACAAGTAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TCGGTGGTTACATTATGATTGGTTTGCCGAAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CACCATCGCCATCACCCAATGAACTCATTA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TACCGTCTTTTAATTCCTCTATACGGTTAC
GTTTTAGTACTCTGTAATTTTAGGTATAATTGATTC	ACATTGGTATTGCGGGTGGCGGTCAGGTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATAAGGTTGACGCAGCACCCTTACAATACG


>NZ_CP031274|1|3|148319-148884|PILER-CR
	CAAGCACAAATGGTTGACCATATTAT
CGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCCTA	TCATAACGCTCTTTCCACTGCCAGGC
GGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTTTGAGTCAAATGGCGTAGCGTTTAGAAGTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAAAGTCGTGTATCAATTGACGCAATCCAACGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	GATTGTTAAACGACGAATTGGTTTAACTGA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	GCTCTACACCCTCAACAACCGCTGTTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCA	AGAGCGGTTGTTTTACTTTTCTTACTACC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATAATCATTCTTCCTAGTACGTCTGATTGAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCATATGACTCAAAGGTACACCCTCAATCATCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGATTACGTGGCTTTTGTTGAGGGGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TAAGGAGGGGATATTGAATGAAAAGAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CTGCATCAGGTGAAGATTTAGGACAAGTAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TCGGTGGTTACATTATGATTGGTTTGCCGAAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CACCATCGCCATCACCCAATGAACTCATTA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TACCGTCTTTTAATTCCTCTATACGGTTAC
GTTTTAGTACTCTGTAATTTTAGGTATAATTGATTC	ACATTGGTATTGCGGGTGGCGGTCAGGTGT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ATAAGGTTGACGCAGCACCCTTACAATACG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031274.1\|WP_145399955.1\|152325_153228_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP031274.1\|WP_145399951.1\|142536_144198_-\|FAD-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|183782
NZ_CP031274.1\|WP_145400312.1\|160259_161852_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NZ_CP031274.1\|WP_037576666.1\|144535_145177_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NZ_CP031274.1\|WP_107366678.1\|153232_153541_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP031274.1\|WP_145399821.1\|145338_146907_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_CP031274.1\|WP_145400309.1\|156409_157102_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
NZ_CP031274.1\|WP_145399953.1\|149161_152326_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP031274.1\|WP_145399950.1\|140509_142093_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341276
NZ_CP031274.1\|WP_145400310.1\|157076_158426_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
NZ_CP031274.1\|WP_037576673.1\|139301_139622_-\|SPIN-family-peroxidase-inhibitor	unknown	unknown	unknown
NZ_CP031274.1\|WP_105965797.1\|136717_137620_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP031274.1\|WP_037576776.1\|137679_138114_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|225356
NZ_CP031274.1\|WP_145400311.1\|158427_159540_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223234
NZ_CP031274.1\|WP_145400308.1\|154835_156158_-\|Mn(2+)-uptake-NRAMP-transporter-MntH	unknown	unknown	gnl\|CDD\|234815
NZ_CP031274.1\|WP_037576676.1\|138439_139066_-\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675
NZ_CP031274.1\|WP_037576664.1\|147063_147486_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
NZ_CP031274.1\|WP_103159538.1\|159532_160213_+\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|179280
NZ_CP031274.1\|WP_105965796.1\|135945_136695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031274.1\|WP_145399957.1\|153554_154559_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP031274.1\|WP_145399955.1\|152325_153228_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.10016e-94
NZ_CP031274.1\|WP_145399951.1\|142536_144198_-\|FAD-binding-dehydrogenase	gnl\|CDD\|183782	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.	0
NZ_CP031274.1\|WP_145400312.1\|160259_161852_-\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	4.17522e-104
NZ_CP031274.1\|WP_037576666.1\|144535_145177_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.04248e-63
NZ_CP031274.1\|WP_145399821.1\|145338_146907_+\|IS1182-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.17934e-26
NZ_CP031274.1\|WP_145400309.1\|156409_157102_+\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	6.00648e-50
NZ_CP031274.1\|WP_145399953.1\|149161_152326_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	4.12499e-121
NZ_CP031274.1\|WP_145399950.1\|140509_142093_+\|AMP-binding-protein	gnl\|CDD\|341276	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes.	0
NZ_CP031274.1\|WP_145400310.1\|157076_158426_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
NZ_CP031274.1\|WP_105965797.1\|136717_137620_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.54756e-27
NZ_CP031274.1\|WP_037576776.1\|137679_138114_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl\|CDD\|225356	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown].	6.42995e-27
NZ_CP031274.1\|WP_145400311.1\|158427_159540_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	4.41183e-109
NZ_CP031274.1\|WP_145400308.1\|154835_156158_-\|Mn(2+)-uptake-NRAMP-transporter-MntH	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP031274.1\|WP_037576676.1\|138439_139066_-\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	3.85483e-107
NZ_CP031274.1\|WP_037576664.1\|147063_147486_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	1.63617e-39
NZ_CP031274.1\|WP_103159538.1\|159532_160213_+\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|179280	PRK01322, PRK01322, 6-carboxyhexanoate--CoA ligase; Provisional.	6.00096e-90
NZ_CP031274.1\|WP_107366678.1\|153232_153541_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.27556e-30

>NZ_CP031274.1|WP_037576664.1|147063_147486_-|Hsp20/alpha-crystallin-family-protein
MAFQMKPFNNSIFDMNPSDLFRDFGQGLLNTNDFKTDITERDDAYIVSAELPGMDKSDISVDFNNNILTIAASHSEDNKEENDEGVIIHRERHTSSVKRQFSFNDVRRDNIEASYDKGVLHITLPKNQNENDSSSRITIN
>NZ_CP031274.1|WP_145399821.1|145338_146907_+|IS1182-family-transposase
MYKNYNMSQLTLPIETEITFPENDVSTIINQLVESIPDAEFNAYYNHRGPSSYHPKMMLKILLYSYSQSVFSGRKIAFLLKDSCRLMWLAQGQTPSYRTINRFRVNPHMMGILQTLFVGFRAQLIEDKLISEDVVYIDGTKLEANANKYTFQWLANTERFSQSVVEKSNTLYETLVAEEIIPEIKKESSEELSKEEMNQIETYLENKEKNLTSQIENTANTQERKTLRKQRSQIKKSKKAINDFRERKIKYENQKEIYGDRKSYSTTDHDATFMRMKDDHMKNGQLKPGYNLQIATNNQFVLAYGVYNKPGDTRTLEPFLNEIKELYGDIPEYIVADAGYGSESNYKMILDDFEKTPLITYGTYIKEGKKKFKNDPFISANWRYNELDDYYLCPNNKELHFFKYRIRHDYYDYRRDFKEYRCEDCFDCPLRSKCMKQTKNPNTNKKLLKNFTWEYLKNYTKQLLSDPKMNGIYKKRKIDVESAFGNLKANLGFKRLSVRTQSKVECEIGIALMALNIRKLAR
>NZ_CP031274.1|WP_037576666.1|144535_145177_+|hydrolase
MAKNQDLYQRLNKDDAVVLLVDHQTGLISSLVRDYGVDEFKNNVVALAETAKFFDLPVILTTSFEEGANGPLMKEITDIFPDATKIPRPGQINAWDNEDFVEAVKKTGKKQIIIAGVVTDVCVAHPALSAINEGFEVFAVVDASGTVSKQVADAALMRMQQGGVQLTNWFSVASELQRDWRNDPDGFGALLTNNLPGYQNVMGSYLAAQSQQK
>NZ_CP031274.1|WP_145399951.1|142536_144198_-|FAD-binding-dehydrogenase
MQKHVHIIGAGLSGLVAATELLKKGHRVTLLDQEPPQAIGGQAYWSFGGLFLVNSKVQRRLNVKDSYELALNDWLGSAGFDRLEDEDYWAYEWAKAYVRFATYEKEDYLHQMGIKLTPLLGWAERGGSSASGHGNSVPRFHITWGTGPGLVEPFIQYIRQYEATGQFTFLPRHQVTDLHIENNQVKRISGHLLEPSDVPIGAPSSRKIVDTFHFDVDYLLITTGGIGANEALIKKHWPKRLGPPPKSMIQGVPDSTDGKMLEISERSGVQLVNKDRMWHYTEGIQNHSPIWNKHGIRIIPGPSSLWFTATGERMVAPDYPGFDTLHTLETIMKTGYDYSWFILTEEIIKKEFVLSGSEQNPDLTNKDLQLLIKERLGKQATGPVRAFLNKGADFVVADDLKTLTDKMNQLTEEPLIEYQQIKKEIEARDLQLHNPFSKDAQMSFIHNARHFLGDRLIRTAKPHPILGGKNGRLIAVKLHIISRKTLGGIQTNLNGQAFNSEQQPITGLYAAGEASGFGGGGVHGYRALEGTFLGGCIFSGIRAAEGIHKDVTK
>NZ_CP031274.1|WP_145399950.1|140509_142093_+|AMP-binding-protein
MNKAELVAPKNYNIVDEIEKYSQNPQKLALIYEKGFDAPEKVTYTELIKQANRVGHVLTKSGLKKGDRILVMLPRAIETYEIYIAALKLGLTIIPSSEMLRTKDLQYRITHGSVAAVITMPEYIKEFERVEEYETLIKLLANGEHEDWTAIASEKMKQPEELESVSTTRDDLAILSYTSGTTGNPKAVMHTHGWGFAHMQLAPKQWLNIQEDDLVWATAAPGWQKWVWSPFLSIMGSGATAFVYNGKFKASRYLELLQDFKINVLCCTPTEYRMMAKLNNLDSYDLSHLRSAVSAGEPLNRDVVDKFEQHFGLTVRDGYGQTESTLLIGFLEDTPKRPGAMGKAIPGTGVTIIDDDGTELGPNEEGNIAVPLDLPALFKGYLNDEARTKEARLAGYHITGDLAQKDADGYFWFEGRKDDIIISSGYTIGPFEVEDALTHHEAVKECAVVASPHPERGNIVKAFVILQEGYEASDALIHDMQQFVKQSVAPYKYPRAIEFVDHLPKTNSGKIRRVVLRNEEKKKHQSK
>NZ_CP031274.1|WP_037576673.1|139301_139622_-|SPIN-family-peroxidase-inhibitor
MNVNKVILTAVTTGVLATGLFVAVPHEKADAAVKSQNGIVLQDDSRILEHELDYVGIIVDKKADKKIKANLKAYLKLQGFNSVSDFVKKAKSQGLDTSKYDYLIKK
>NZ_CP031274.1|WP_037576676.1|138439_139066_-|FMN-dependent-NADH-azoreductase
MSKLLYITAHPLDELVSNSMAAGTAFIESYKENHPEDEIVHIDLFKDYIPFIDGDVFSGWGKLQNGEALTSEEEKKVSRLNELSDQFVSADKYVFVTPMWNLSFPPVMKAYIDSVAVAGKTFKYTSEGSVGLLTDKKALHIQSRGGYYNEGPAKDLEHGDSYLRAMMTFFGVPTYENVIVEGHNKAPERSEEIKSAAILKAKELGQTF
>NZ_CP031274.1|WP_037576776.1|137679_138114_-|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MKAVTYFNFGNALEALTFYEEKLGAEIVSKTMGDDEMFKNLPEEYKMPYEVAKRFVMNAEFKILGQHFMVSSTQGERPVNNEGMNVCFTFDGNDEEDVKAATTFYQRALDAGCQETMPLGETEWSKLYGMFQDPFGVTWMINAC
>NZ_CP031274.1|WP_105965797.1|136717_137620_+|HAMP-domain-containing-histidine-kinase
MAYGIGAVLVVIIVFLGLRYFRLKKEVEYFTQQLIKINQDVETNQYMRSATGLKQSQALLNELNTYMNQLRNYRYFYRKKELMLNKEINNVSHDLRTPLTAIKGYTEIIKETDNKEDLLKYIQVIDEKTTHLIKSVNLFHELTYLNAFDYELDLETMDIVEFIKAQFMSYFKQFDNKGIQITFENSNVLEVLAHKEAMIRVVNNIIQNVLRYGKNQAKVRFVETQEFINIHIENDTEYRMNDAQVQKLFERAYTLDESRTNQTTGVGLYIVKNLLERQRGQVSLQFEKPMFAIIMSLRKV
>NZ_CP031274.1|WP_105965796.1|135945_136695_+|hypothetical-protein
MINLLKSQCYLILRTKKFYIFAIICFLLIILAGVVLYVSGKQEATFPYDNARFYYINVLGFSGLLILLCIMVNQFVHSKEFQQSEKVSIAYDISKQSIYFGKFLAVLCYFSIVSIIAYVILLTLGINLFEDGWRYSLDITISFLNMAPIIFGALATSHALYSSRYKTIGVLMWILFIFLFSKQIFYGLMTINKAFAPIYRLTPQYLLDQNMQMYMLDKVHIDLKCWLVGLSIGIFSLILGYVKFKKVEY
>NZ_CP031274.1|WP_145399953.1|149161_152326_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNYILGLDIGITSVGYGIVNSETREIIDAGVRLFPEADVNNNEGRRSKRGARRLKRRRIHRLGRVKQLLAKYELLDSSSIPQSTNPYEIRVIGLRNELSKDELVIALLHIAKRRGIHNVNVVIDDNESNNELSTKDQLKKNAKALEDKYVCELQLERFKQEGKVRGERNRFKTEDFVKEARQLLKTQTQFHPIEQNFIDQYIHLIETRREYFEGPGEGSPYGWEGNIKKWYEQMMGHCTYFPDELRSVKYAYSADLFNALNDLNNLVITRDEDSKLNYGEKFQIIENVFKQKKTPNLKQIAKEIGVNETDIKGYRVNKSDKPQFTSFKLYHDLKEIFEHTEYLKDAQLMDNIAEIITIYQDPESIISALNELPELLTENEKQQISQLTGYSGTHRLSLKCINLLIDDLWESSLNQMELFTKLNLKPKKVDLSRQNKIPTNLVDEFILSPVVKRAFIQSIEVVNAVIEKYGLPDDIIIELARENNSDDRRKFLKKLQKQNEETRKQVEKVLKEYGNDNAKRMVQKIKLHNMQEGKCLYSLKDIPLDDLLRNPTHYEVDHIIPRSVAFDNSIQNKVLVRAEENSKKGNRTPYQYLNSSESSLSYKEFKQHILNLSKTKDRISKKKREYLLEERDINKFDVQKEFINRNLVDTRYATRELTSLLKAYFSANQLDVKVKTINGSFTNYLRKVWKFDKDRNKGYKHHAEDALIIANADFLFKHDKKLKNVSKILDAPGQEVDSSRTSVQSEDEFNEMFENTQKATAIQKFEIQKFSHRVDKKPNRQLINDTLYSTRNIEGTEYVVQTLKNIYSKDNKDVKKLIEKDPSKFLMYQHDPKTFEKIQMIMKQYSDESNPLAKYYEEKQEFITKYAKRGDGPPVKALKYIGKKVGIHLDVTSDYENSKNKLVKLSKKSFRFDIYQTPEGYKMVPITYLDIKKKDTYFVIPHEVYKNILSRKKVDDTARFVGSFYYNDLIKFEDNIYKVLGVNDAEGNIIELDMVDIKYKEFCELNDIKSTPRIRKTIGKSTTNIEKYTTDILGNLYKATPPKKPQLIFKRGME
>NZ_CP031274.1|WP_145399955.1|152325_153228_+|type-II-CRISPR-associated-endonuclease-Cas1
MSWRIVYASDVSKMSLNLNSLKVTKGDLEVKIPLSDIFAVVIEDLTVTLTARLLVELSDYNILVILCNQKHLPECMLQPISGHFSQYGQMKEQLSWNQAQKDELWKRLVQQKISNQIECMRHVQVNPIRIEKMQQLQASVKLFDRENIEGQAAKYYFNSFFTGFTRDNDDLLENAVLNYGYTILNSAIARTIVAKGLIPAIGIHHIGGRNHFNLASDLIEPFRPLVDLFLLKHPPEDFMTKSYRLNLVNLLHARIEIDGKMQTVIRAIDIMIQSMIEYFREGRIDLLKFPNLYKYEFYEL
>NZ_CP031274.1|WP_107366678.1|153232_153541_+|CRISPR-associated-endonuclease-Cas2
MRVLLMFDLPVETKQQRRIYSKFRKRLLENGFLMMQYSIYIKSVANKDAANFSVNQVKQFLPPDGHVRVLIITEKQYEKMQILLGEEDQNIALLGDNRTILF
>NZ_CP031274.1|WP_145399957.1|153554_154559_+|hypothetical-protein
MNEMTWEIKCEDFENVTLNIGQYTSIYNEHDTKEEDILKVIHHYFQKRNSNKNEVIIYDTQNQETVSHASYQCWTLNHEIIEKEHALATNAILTKKILRKLGNHLEMESYFNSINALHEDILATVQEELPLCVKRFDYKAFLKLLEFQYEVCEDYDRLIVRLEKLLPLLIEEMNALSNQRTLLIYQYPEANLSPKEQQRFRKCLENLGVPIIVLTGSTHFLSSKLTNNNYLRKGQQMLTKAFLHHLVWNAPLNFDENQIKHSLNAFIQLYQEKVELTPVISNYRLADIMLFDTIDLYVGITYMKHINQSYQLDINYHQLNDPMIKFIQSYDKTS
>NZ_CP031274.1|WP_145400308.1|154835_156158_-|Mn(2+)-uptake-NRAMP-transporter-MntH
MSKSLEDINNTVSFDEQGSYLTRLSKFIGPGLLVAVGYMDPGNWITSIGGGASYGYILLFVIFISSISAMFLQSMCARLGIASGMDLAQVTRHMISKKMAVIAWIIAELAIMATDIAEVIGSTIALNLLFHIPLIIGAVITIVDVFLLLLIMKFGFRKIEAIVGVLIFTILIIFLFEVYMAQPGVSDILKGFIPQKEIVTHNGILYMSLGIIGATIMPHNLYLHSSIVQSRKYDRNSVSAKKSAIQFAQIDSNIQLSIAFVVNCLLLILGAALFYGTSQDLGRFYELYDALKTSHVASAIGGGVTSTLFAVALLAAGQNSTITGTLSGQIVMEGFIHLKMQPWVRRVVTRLLAILPVFFCLLIYGANAQKIEDLLVFTQVFLSLALPLSMIPLILATNNKTIMGDAFINTRWVNIVGWLLTLILCILNVYLIISTLMEMM
>NZ_CP031274.1|WP_145400309.1|156409_157102_+|dethiobiotin-synthase
MKIFITGTNTDVGKTYVVTRLWQWLNHRGISTVIFKPFQTEELEGGLYPDLEAYRTICGLDYELTGLYTFHEAVSPHLAFKQEPHQQFDLNKVLSKLAYLETQYDVVLIEGAGGIAVPIYVENETFFMTTDLIKATADVVLSVVPAKLGAISETLVHQSYLDTHECPPNIILMNRYTDTVIEQDNRLTLQSYLKTPIVTFPENGKMTDIPETIFNYFKEVTFHETSNTRR
>NZ_CP031274.1|WP_145400310.1|157076_158426_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MKHQTLVDKNLEYVWHPFTQMGVYRQQDPIIIEKGKGSYLYDTKGRRYLDGYASLWVNVHGHHNKRLNKAIEKQLKSIAHSTLLGSSNIPSILLAEKLVDITPRTLRKVFYSDTGSAAVEIAIKMAYQYWKNVDPVKYRKKNKFITLKNGYHGDTIGSVSVGGIETFHQIFNDLIFENIQVTCPSFYHSTYDTEEDLKEAVLNQIERVLRTRGDEIVGVVMEPLIQGATGLFVHPKGFLKGVEQLCRQYDVLMIVDEVATGFGRTGELFACEHEQVEPDIMCLGKAITGGYLPLAATVTSQRIYDAFLSDAHGQKTFFHGHTYTGNQVVCALALENIQMIEEKHLIRHIQQTSQVLEKQLRQLETLPHVGNVRGRGLMFAVELVSDRQKKSPLAIATVERIIAECKKRGLMIRNLEHIITFVPVLSMSKREIKKMTHIFKNVLEDILGD
>NZ_CP031274.1|WP_145400311.1|158427_159540_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MQFQSYLEQLQQQGQYRQLREVETARKQRLYRDGQAWINFTSNDYLGLGQRTIDMDVLERAIQKYGAHLGSSRLVSGHSTLYAEIEQDISEAYGFEGALLLGSGYEANLAVFQMFKKQDVIIFSDALNHASIIDGIQLARVKKVVFPHLDYARLKMEMAKYPHQLKVIVTDTIFSTNGHMANLHQLRRLKSEFPGTLLVVDDAHGFGLGYGTGYENIDIVTTSLSKAMGAHGGLILCSYVIREMLINTARPLIYSNCLPTMNLFLIQEQFRALQNADFERRQLHQNIQYFNEMNENTEHTLTAIKTVTYENVHTAKAMHSQLLDSGFWVSLFRPPTVATPALRMSLSAFHEQEDIMRLHTILKKGDTPHV
>NZ_CP031274.1|WP_103159538.1|159532_160213_+|6-carboxyhexanoate--CoA-ligase
MYSIKMRASEDNQHISGAETICEAKDIEQVIAAYFHKGFQHENGDADFLNLKIEKITSPLVQLQALPIIEVQSQTFKQLALDRKITDKAMEQAWRYITNPTCYRGAIILDATTGERLDNFGERGCRVTHFCFQHQSSKSPLNERVRDALSIASIIQSNEGVVGELCVSDDVNYTTGYFADAKGYHRLHNVKMKGSRVGGRIIFVNQKFQLESFLYFCQQQPKRVIY
>NZ_CP031274.1|WP_145400312.1|160259_161852_-|L-lactate-permease
MLMLVALSAVIVPFIFLVLLRMSALVGMTISAIVVTILGMFAWGIEAGVIAASFLQGIHKTLTIILILFGALTLLNTLRETSAVDRINAGFQNVSGDMRVQVIIVAFLFGSLIEGASGFGTPAMVTAPLMVALGFKPLTSVATALIADSVAVSFGAVGTPVIVGLSTLKNANAHLFSETAIRITMLDLLSGILIPSIIVITMIVFFGKSDKLKAILEILPWTLLIGVTYVLSALAYALLTGPEFVSILSSLTTIIVAVFTAKKGWLVPKNEWKDALSEVYESKPQATHQMSLLSAWSPYLIVVALLLLTRVVAPVKAFTTSVFNLSWNNILGYESISSSWEVLYSPGTILVVAAFLAVLIQRKSMKNFTKACKDSIKTIRITGITLIATLAMVHVFSNSGINTKDLISMPEYIANGMASTFGQMWLFVAPFLGALGSFITGSATVSTLTFAPVQANIAAAIEGNTTTVLAAQIIGAAAGNMICVHNVVAVCAVVNMAGKEGSVIRKTLGPALLYCLLAGISAYLFTTFFL

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Crispr_ID: NZ_CP031274_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031274_2

978904-979011

Orphan

Consensus_repeat	Method
GTGGGTTCGATTCCCATCAGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031274_2

>merge|NZ_CP031274|2|978904-979011|CRISPRCasFinder
GTGGGTTCGATTCCCATCAGCCGCCCATATCGTAAAATGCGGGTGTAGTTTAATGGCAAAACCTCAGCCTTCCAAGCTGATGTTGTGGGTTCGATTCCCATCACCCGC

>NZ_CP031274|2|2|978904-979011|CRISPRCasFinder
GTGGGTTCGATTCCCATCAGCCGC	CCATATCGTAAAATGCGGGTGTAGTTTAATGGCAAAACCTCAGCCTTCCAAGCTGATGTT
GTGGGTTCGATTCCCATCACCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031274.1\|WP_037574531.1\|986756_986999_+\|DUF2273-domain-containing-protein	unknown	unknown	gnl\|CDD\|227834
NZ_CP031274.1\|WP_037574557.1\|971041_971779_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP031274.1\|WP_105963632.1\|980240_980567_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031274.1\|WP_145400705.1\|975044_975977_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|183526
NZ_CP031274.1\|WP_105963601.1\|969416_969947_-\|HTH-type-transcriptional-regulator-Hpr	unknown	unknown	gnl\|CDD\|237501
NZ_CP031274.1\|WP_145400714.1\|987046_987541_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NZ_CP031274.1\|WP_105986546.1\|973246_973783_-\|signal-transduction-protein-TRAP	unknown	unknown	gnl\|CDD\|225209
NZ_CP031274.1\|WP_145400708.1\|979641_979863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031274.1\|WP_145400713.1\|985125_985872_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235506
NZ_CP031274.1\|WP_145400704.1\|973979_975023_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP031274.1\|WP_145400707.1\|977704_978259_+\|serine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226075
NZ_CP031274.1\|WP_145400710.1\|982403_982514_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031274.1\|WP_103158796.1\|986184_986736_+\|alkaline-shock-response-membrane-anchor-protein-AmaP	unknown	unknown	gnl\|CDD\|380217
NZ_CP031274.1\|WP_145400711.1\|982500_982695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031274.1\|WP_145400709.1\|982204_982333_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031274.1\|WP_037574561.1\|970046_970403_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|227313
NZ_CP031274.1\|WP_145400706.1\|975982_977380_+\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|237009
NZ_CP031274.1\|WP_145400703.1\|971775_972990_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377581
NZ_CP031274.1\|WP_145400702.1\|970487_970913_-\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP031274.1\|WP_145400712.1\|983758_984613_+\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|379143

Protein	Function_ID	Function_description	E-value
NZ_CP031274.1\|WP_037574531.1\|986756_986999_+\|DUF2273-domain-containing-protein	gnl\|CDD\|227834	COG5547, COG5547, Small integral membrane protein [Function unknown].	1.60344e-17
NZ_CP031274.1\|WP_037574557.1\|971041_971779_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.70593e-87
NZ_CP031274.1\|WP_145400705.1\|975044_975977_+\|ferrochelatase	gnl\|CDD\|183526	PRK12435, PRK12435, ferrochelatase; Provisional.	0
NZ_CP031274.1\|WP_105963601.1\|969416_969947_-\|HTH-type-transcriptional-regulator-Hpr	gnl\|CDD\|237501	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr.	4.89982e-55
NZ_CP031274.1\|WP_145400714.1\|987046_987541_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	9.38378e-36
NZ_CP031274.1\|WP_105986546.1\|973246_973783_-\|signal-transduction-protein-TRAP	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	0.00193126
NZ_CP031274.1\|WP_145400712.1\|983758_984613_+\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	3.4497e-11
NZ_CP031274.1\|WP_145400713.1\|985125_985872_-\|SDR-family-oxidoreductase	gnl\|CDD\|235506	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	2.10577e-93
NZ_CP031274.1\|WP_145400704.1\|973979_975023_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP031274.1\|WP_145400707.1\|977704_978259_+\|serine-hydrolase-family-protein	gnl\|CDD\|226075	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only].	1.60667e-38
NZ_CP031274.1\|WP_103158796.1\|986184_986736_+\|alkaline-shock-response-membrane-anchor-protein-AmaP	gnl\|CDD\|380217	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP. The founding member of this family, AmaP (Asp23 membrane anchoring protein), is related to Asp23 through part of its length, but includes a highly hydrophobic N-terminal region that should make it an integral membrane protein. Asp23 (alkaline shock protein of 23 kDa), described in PMID:7864904, is a cytosolic protein in Staphylococcus aureus, strongly induced by a pH shift from 7 to 10, and also recruited to the membrane. AmaP appears to be the partner protein with an integral membrane segment and the ability to anchor Asp23 to the membrane. This model was built to identify full-length homologs of AmaP, while excluding Asp23. Some but not all members of this family score above the cutoffs of Pfam model version PF03780.11, but full-length homologs of Asp23 score considerably higher. Asp23 family members previously were known as DUF322.	2.91572e-37
NZ_CP031274.1\|WP_037574561.1\|970046_970403_-\|YtxH-domain-containing-protein	gnl\|CDD\|227313	COG4980, GvpP, Gas vesicle protein [General function prediction only].	1.05462e-14
NZ_CP031274.1\|WP_145400706.1\|975982_977380_+\|protoporphyrinogen-oxidase	gnl\|CDD\|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	0
NZ_CP031274.1\|WP_145400703.1\|971775_972990_+\|ABC-transporter-permease	gnl\|CDD\|377581	pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters.	2.45725e-79
NZ_CP031274.1\|WP_145400702.1\|970487_970913_-\|HIT-domain-containing-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	1.30374e-50

>NZ_CP031274.1|WP_145400707.1|977704_978259_+|serine-hydrolase-family-protein
MTNVYIVYGYHANENKHWFKWLKNALELEGHDVKIIDLPNPDAPDVEEWLTALKTQATAIDGDTLFVAHSLGVITTLKFINDLNVSHIGGIAMVSGFKDYLPHLPELNPFMDQNIDFDNLKQKLNHRFCIASKNDETVPYSYTEELSHSLDAKLYTIEQGGHFCEEDGYETFSFLKQKIILKLD
>NZ_CP031274.1|WP_145400706.1|975982_977380_+|protoporphyrinogen-oxidase
MTKIAIVGAGITGLSSAYFIKKHYPHIDVTVYEATDQPGGKIKTVQRDGYTIELGPESYLGRKTIMTELAKDIGIKDEEIITNKTGQSFIFARNKLYPIPGGAILGVPTDIKPFMSTKLISMKGKLRALKDLKRKPIEMKEDLSVGSFFRYRLGDEILENLIEPLLSGIYGTDIDQLSLMSTFPNFKTLEDTHGSIIKGMQKVRLDREKKHSHNTEGPQGQFKQFRNGLFSFIEQLEKWLKQNNVHFKYQTPVTDLISEQKGYNVETAQEAPTFYDGVIVATPHQVFHKWFETDPGFDYFSRLEASSVATIVFAFDEKNIKNTSNGTGFVIARTSDTSITACTWTTKKWPHTTPKGKVLIRAYVGKPGDDIVETHSDEELVEIAKKDLSQMMTFYGEPDFTIVNKMPHASPQYHVGHIHEIKKIQEHIYREYPHLQITGAPFEAVGLPDCIRQAQNAVQRLIPRI
>NZ_CP031274.1|WP_145400705.1|975044_975977_+|ferrochelatase
MKKEVGLLVMAYGTPYQKSDIEPYYTDIRHGRKPSEEELNDLISRYEAIGGLSPLAKITERQAEAIRDALNERYEDIEFKLYIGLKHIHPFIEDAVEKMNNDGITEAVTVVLAPHYSNFSVGSYNRRAEEKANEYGIRLFHVKHYYQQPKFQEYWTMRVDEILANIPQEEHAKTVLVVSAHSLPEKMIKESNDPYPMELENTAKAIQQQSVIQNVAIGWQSEGNTGTPWLGPDVQDLTKALYKENKYEHFIYTPVGFVAEHLEVLYDNDYECKVVCDEIGATYHRPPMPDIHSLFIGAIVDEISNIYEKV
>NZ_CP031274.1|WP_145400704.1|973979_975023_+|uroporphyrinogen-decarboxylase
MNTPFNDTILRAIKGDTITHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTALPVEQYQTDAAVLYKDIMTPLKAIGVDVDIKSGIGPVISNPIKSLSDVEKLGQIDPKRDVPFVLETIKLLTTEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNKTKALMYSDETTWFKLMDTLAEMSITYVGAQVEAGAQLIQVFDSWVGALNQADYVYYIKPCMEKLINGIKAFQVPVIMFGVGASHLITSWNALPIDVLGLDWRTSILEAHHQGVSKTIQGNLDPSILLAPWPVIEERLKPILDQGLTHGKHIFNLGHGVFPEVQPETLQRVSKFVHDYTGAKLK
>NZ_CP031274.1|WP_105986546.1|973246_973783_-|signal-transduction-protein-TRAP
MKLYITYGTYGYIHQIQLNNKDRNLMIFSSEDRSVLIEETDKESVFQQPKSFRSLTRVGDISEEDFQAVISIPTSEDHKYQLEKKLDSYYPNLSEYEGYKSFRLLKPLKDNVYKVMFGFESRTAFEDFKKSSVFRENFSKEAVRALAGVTSTHSSYLERYFYPITEEEIANQQQNDEQ
>NZ_CP031274.1|WP_145400703.1|971775_972990_+|ABC-transporter-permease
MNNAKQLYVKRRQKDQKEKQYYNKFIFNGHFSVFLVILLGAFILGYGQWLRTIPTGINYLLIISIVLGLSSIFPLKTLLQKADELFLLPFEKQMRQYIQQSVYTSYFKRLPLQIVLLIIFYPLLNALHPNELFSFIVLVLLAFVLPFIGLQLRWQWFLFGLENASINLLLFIFYVSSYYVWLDGQSYMAMGSLVFIIILIYMFKSFNDKKHFPWELMLNQAKQHQSNYYKFVNMFTDVKGIEAPASRRKYLDVFLKKPKEFNQKGMYLYLFKRNFLRGKDAFHLTIRLFIIVAALMIWLHQPIISIIIAVLGMYIIILQMSQFYTQEAYGLWPQVWPASELLVIKGYEQFLYRTVIIVGILFSLIYIIMNPTELYLVMFIFAVGIATVKSTIRKLKYQESLLKD
>NZ_CP031274.1|WP_037574557.1|971041_971779_+|ABC-transporter-ATP-binding-protein
MTVQVTDLTGGYGQTPVIKNISFTLQPGEIVGLIGLNGAGKSTTIKHLLGLLTPMEGEMSISGINIKENIEAYRKRLSYIPESPVIYDTLTLKEHIEMTAMAYGIDAETAMERAKPLLKNFRLESQLDVFPSHFSKGMKQKVMIICAFIVDPELYIIDEPFLGLDPLGIQSMLDLMESKKKEGRTVLMSTHILATAERYCDRFIILDQGEIVAMGDLEELRAQTKMPHQTLDEIYIKVTERGITT
>NZ_CP031274.1|WP_145400702.1|970487_970913_-|HIT-domain-containing-protein
MSETIFSKIIAGEIPSYKISKNEYVYAFLDISQLSKGHTLLIPKKASPNIYETDAETMQHIGEALPIVANAIKEAFNPDGLNIVQNNGEYASQSVFHIHFHLIPRYKEGMDGFDYQWETHEDAFNDEEKAAIAKQIADQIK
>NZ_CP031274.1|WP_037574561.1|970046_970403_-|YtxH-domain-containing-protein
MRALQISLGLAAGVATGLGVALTQRSKSTRIESTTVERPKSELELEVDNIKRSVNDILGYVNDIKTESQSVAGTIGDEIKTMISEFQSDINPNIERLQSHIENLQNRGEEITNFPSKK
>NZ_CP031274.1|WP_105963601.1|969416_969947_-|HTH-type-transcriptional-regulator-Hpr
MTEKQKQIESILFTHKAAMLSKVIWKNAERDWQKWLRKSGITMNEHLILMTIYAFDRVTISDISRYGVMHVSTAYNFAKRLEQQGLLTLEKDTHDKRNTFIHLTDKGTVLIENIFEQYNIDNNSVFQASEQFSSEMFHKPNFSDAHYLVAKIHGKDFIDDVNACHDHLRKHLLDAE
>NZ_CP031274.1|WP_145400708.1|979641_979863_+|hypothetical-protein
MDERSWINSGEWVPFDQEIKDVENKLWWVRFKYAAKGANQKDNFFMPIGKITDKEERLLKEKALWGKLEVKQK
>NZ_CP031274.1|WP_105963632.1|980240_980567_+|hypothetical-protein
MFTKQEIKKYKAEDQLRAGKTQFVETGDSTSTLYLSSAYTKTIAALGAAASTVIGGLIGGTVGGSIGAFLSSIAGSNIDTSKGIYINFKAQRDATGQYVLVAQKWGYQ
>NZ_CP031274.1|WP_145400709.1|982204_982333_+|hypothetical-protein
MLDIIKTLLEYPVLATLLIPTTLKQLRLWHLGYLDRKPNNKE
>NZ_CP031274.1|WP_145400710.1|982403_982514_+|hypothetical-protein
MTWQMYISLFALSLPLLLFIVRKTHFYYLDKKNGRR
>NZ_CP031274.1|WP_145400711.1|982500_982695_+|hypothetical-protein
MDVDNMSEYKMKIIKLIESDITGYQIHKETGVSQYVISQLRQGKRDVDNLTLNTTEKLYNYQKN
>NZ_CP031274.1|WP_145400712.1|983758_984613_+|PrsW-family-intramembrane-metalloprotease
MKNLFKKYKYHALIFLAVWSFFSGCKIFYESFGKPNGLEDKYPLFLLNISLIAIYAIPLILLTRYLAKRFEISKKVIHLSWVMALTASVYFSDIGHTIVGYITIVIFKIPDSIRADWGPAIGGPLAEEFGKGLAVLLVLLILKKMDLKNALVSGMIIGLGFQIIEDCIFTFQEIFLAKADGFSVLLERIAFSGGTHWVFTLIFAIGIVALIAKDTGITKIQGLVCVLVAILMHFIYNTPFNEGIGSNTGNFTVLLLTLNLSLALLAFKTVDKVVTHQKGQFPNH
>NZ_CP031274.1|WP_145400713.1|985125_985872_-|SDR-family-oxidoreductase
MKRLENKVAIVTGGASGIGKATVELFAEEGAKVVVANIGNNGEEFVEELNKNGKDALFISTDVTVEEDVSRLIKKTVEHFGRLDIMFANAGIAKDTKAVDLSFEDWKKTIDVNLSGVFLSDKYAIEQFLKQKSKGVIVNCGSIHSFVSLPHTTAYSSAKGGVKLLTQNLCTAYAKEGVRINAVCPGYIETPLLKDIEEDSKKYLESLHPQGRLGRPEEVAKSVLFLASDDASFVNGTTLLVDGGYTAI
>NZ_CP031274.1|WP_103158796.1|986184_986736_+|alkaline-shock-response-membrane-anchor-protein-AmaP
MIMKRLKNFILGLLIVVIVGFLLFMYIDHQSIKQYQNYFYQFNWFQPLLIGLAGFLILIGLILFFSAFKPTHRKPGLYKDYSDGHIYVSRKSIENTVYDTLKQYDDIRQPNVISKLYNKKNNSYIDIKADYLVPTSTTNVQTLNEKIRNDIKESVEHFAEIPVRKLEINVRDQRKNSNEPRVV
>NZ_CP031274.1|WP_037574531.1|986756_986999_+|DUF2273-domain-containing-protein
MNNNENHQSNQAAVETLANFFNAYKWRIIGFLLFLILAILFITLGFWKTILIAFLCLVGIGLGYIKDRTQDFLNFINRLS
>NZ_CP031274.1|WP_145400714.1|987046_987541_+|Asp23/Gls24-family-envelope-stress-response-protein
MANQNFKQAYNEQTGVNDKVREEKEKNAQSEPQFKNNLTFTDEVVEKIAGIAAREVNGILDMKGGFVDSLSGSFSNGNNVTQGVSAEVGEKQAAIDLKVVLEYGESAPKIFRKVTEIIKEQVKHMTGLDVVEVNMQVDDVMTRKEWQQKNEKNRQNNNENKGLQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP031274_1	1.15\|148553\|32\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148553-148584	32	NZ_CP031274.1	1744361-1744392	2	0.938
NZ_CP031274_1	1.15\|148553\|32\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148553-148584	32	NZ_CP031273.1	2448-2479	2	0.938

1. spacer 1.15|148553|32|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to position: 1744361-1744392, mismatch: 2, identity: 0.938

tcggtggttacattatgattggtttgccgaaa	CRISPR spacer
tcggtggttacatcatgattggtttaccgaaa	Protospacer
*************.***********.******

2. spacer 1.15|148553|32|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to position: 2448-2479, mismatch: 2, identity: 0.938

tcggtggttacattatgattggtttgccgaaa	CRISPR spacer
tcggtggttacatcatgattggtttaccgaaa	Protospacer
*************.***********.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031274_1	1.8\|148092\|29\|NZ_CP031274\|CRISPRCasFinder,CRT	148092-148120	29	MT724048	Staphylococcus phage SAP3, partial genome	38025-38053	0	1.0
NZ_CP031274_1	1.12\|148355\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148355-148384	30	MT724048	Staphylococcus phage SAP3, partial genome	38221-38250	0	1.0
NZ_CP031274_1	1.22\|148093\|28\|NZ_CP031274\|PILER-CR	148093-148120	28	MT724048	Staphylococcus phage SAP3, partial genome	38025-38052	0	1.0
NZ_CP031274_1	1.8\|148092\|29\|NZ_CP031274\|CRISPRCasFinder,CRT	148092-148120	29	NC_007056	Staphylococcus phage EW, complete genome	36946-36974	1	0.966
NZ_CP031274_1	1.8\|148092\|29\|NZ_CP031274\|CRISPRCasFinder,CRT	148092-148120	29	AY954959	Bacteriophage EW, complete genome	36946-36974	1	0.966
NZ_CP031274_1	1.12\|148355\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148355-148384	30	NC_007056	Staphylococcus phage EW, complete genome	37142-37171	1	0.967
NZ_CP031274_1	1.12\|148355\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148355-148384	30	AY954959	Bacteriophage EW, complete genome	37142-37171	1	0.967
NZ_CP031274_1	1.14\|148487\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148487-148516	30	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	5642-5671	1	0.967
NZ_CP031274_1	1.14\|148487\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148487-148516	30	MK075001	Staphylococcus phage phiSP15-1, complete genome	30486-30515	1	0.967
NZ_CP031274_1	1.22\|148093\|28\|NZ_CP031274\|PILER-CR	148093-148120	28	NC_007056	Staphylococcus phage EW, complete genome	36946-36973	1	0.964
NZ_CP031274_1	1.22\|148093\|28\|NZ_CP031274\|PILER-CR	148093-148120	28	AY954959	Bacteriophage EW, complete genome	36946-36973	1	0.964
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	39287-39312	2	0.923
NZ_CP031274_1	1.12\|148355\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148355-148384	30	NZ_CP031279	Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence	18059-18088	2	0.933
NZ_CP031274_1	1.15\|148553\|32\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148553-148584	32	NZ_CP031273	Staphylococcus chromogenes strain 17A plasmid unnamed1	2448-2479	2	0.938
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	KT001912	Bacillus phage Silence, complete genome	857-885	2	0.931
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	39284-39313	3	0.9
NZ_CP031274_1	1.9\|148157\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	148157-148186	30	KT001912	Bacillus phage Silence, complete genome	857-886	3	0.9
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	AY954953	Bacteriophage 85, complete genome	745-773	3	0.897
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	NC_007050	Staphylococcus phage 85, complete genome	745-773	3	0.897
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	NC_029010	Staphylococcus phage SA97, complete genome	4715-4743	3	0.897
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	AB370205	Staphylococcus phage phiMR25 DNA, complete genome	17351-17379	3	0.897
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	MK801682	Staphylococcus phage SAP33, complete genome	22387-22415	3	0.897
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	MK801683	Staphylococcus phage SAP40, complete genome	20660-20688	3	0.897
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	EU861004	Staphylococcus phage phiSauS-IPLA88, complete genome	15692-15720	3	0.897
NZ_CP031274_1	1.23\|148158\|29\|NZ_CP031274\|PILER-CR	148158-148186	29	NC_010808	Staphylococcus phage phiMR25, complete genome	17351-17379	3	0.897
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	KY065458	Streptococcus phage IPP17, complete genome	12435-12460	4	0.846
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	MK448914	Streptococcus phage Javan348, complete genome	13290-13315	4	0.846
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	KY065495	Streptococcus phage IPP58, complete genome	11832-11857	4	0.846
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	KY065470	Streptococcus phage IPP29, complete genome	14089-14114	4	0.846
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	MK448918	Streptococcus phage Javan366, complete genome	12955-12980	4	0.846
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	KY065494	Streptococcus phage IPP57, complete genome	11832-11857	4	0.846
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	AP013674	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48B-MedDCM-OCT-S40-C310, * SEQUENCING IN PROGRESS *	2545-2570	5	0.808
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	AP013420	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S42-C26	36846-36871	5	0.808
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	AP013419	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S41-C26	35644-35669	5	0.808
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	AP013416	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S24-C17	7995-8020	5	0.808
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	AP013417	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S26-C25	14108-14133	5	0.808
NZ_CP031274_1	1.1\|147764\|26\|NZ_CP031274\|PILER-CR	147764-147789	26	AP013418	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S30-C14	28060-28085	5	0.808
NZ_CP031274_1	1.6\|147959\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147959-147988	30	NC_007055	Staphylococcus phage 37, complete genome	14573-14602	5	0.833
NZ_CP031274_1	1.6\|147959\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147959-147988	30	AY954958	Bacteriophage 37, complete genome	14573-14602	5	0.833
NZ_CP031274_1	1.17\|148687\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148687-148716	30	NC_048847	Alteromonas phage vB_AmeM_PT11-V22, complete genome	76887-76916	5	0.833
NZ_CP031274_1	1.14\|148487\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148487-148516	30	MF417895	Uncultured Caudovirales phage clone 10AX_1, partial genome	30971-31000	6	0.8
NZ_CP031274_1	1.14\|148487\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148487-148516	30	MF417909	Uncultured Caudovirales phage clone 10F_7, partial genome	21994-22023	6	0.8
NZ_CP031274_2	2.1\|978928\|60\|NZ_CP031274\|CRISPRCasFinder	978928-978987	60	NC_020451	Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence	1965-2024	6	0.9
NZ_CP031274_1	1.4\|147827\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147827-147856	30	NZ_CP030843	Acidisarcina polymorpha strain SBC82 plasmid pACPOL4, complete sequence	35100-35129	7	0.767
NZ_CP031274_1	1.7\|148025\|31\|NZ_CP031274\|CRISPRCasFinder,CRT	148025-148055	31	MK448573	Streptococcus satellite phage Javan610, complete genome	1921-1951	7	0.774
NZ_CP031274_1	1.7\|148025\|31\|NZ_CP031274\|CRISPRCasFinder,CRT	148025-148055	31	MK448570	Streptococcus satellite phage Javan608, complete genome	1921-1951	7	0.774
NZ_CP031274_1	1.14\|148487\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148487-148516	30	NZ_CP017468	Staphylococcus nepalensis strain JS11 plasmid pSNJS1102, complete sequence	20245-20274	7	0.767
NZ_CP031274_1	1.18\|148753\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148753-148782	30	NZ_CP028567	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pMCR5_045096, complete sequence	204749-204778	7	0.767
NZ_CP031274_1	1.20\|148885\|30\|NZ_CP031274\|CRT	148885-148914	30	NC_013388	Staphylococcus sp. CDC25 plasmid SAP018B, complete sequence	7069-7098	7	0.767
NZ_CP031274_1	1.20\|148885\|30\|NZ_CP031274\|CRT	148885-148914	30	NC_006663	Staphylococcus epidermidis RP62A plasmid pSERP, complete sequence	21772-21801	7	0.767
NZ_CP031274_1	1.20\|148885\|30\|NZ_CP031274\|CRT	148885-148914	30	NC_013372	Staphylococcus epidermidis plasmid SAP016A, complete sequence	22990-23019	7	0.767
NZ_CP031274_1	1.20\|148885\|30\|NZ_CP031274\|CRT	148885-148914	30	NZ_LR735433	Staphylococcus epidermidis strain none isolate Se_RP62a-WT plasmid 2	5202-5231	7	0.767
NZ_CP031274_1	1.21\|148026\|30\|NZ_CP031274\|PILER-CR	148026-148055	30	NZ_CP018030	Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence	260660-260689	7	0.767
NZ_CP031274_1	1.21\|148026\|30\|NZ_CP031274\|PILER-CR	148026-148055	30	MK448573	Streptococcus satellite phage Javan610, complete genome	1922-1951	7	0.767
NZ_CP031274_1	1.21\|148026\|30\|NZ_CP031274\|PILER-CR	148026-148055	30	MK448570	Streptococcus satellite phage Javan608, complete genome	1922-1951	7	0.767
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	KY065458	Streptococcus phage IPP17, complete genome	12432-12461	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	AP013419	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S41-C26	35641-35670	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	AP013416	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S24-C17	7992-8021	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	AP013417	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S26-C25	14105-14134	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	MK448914	Streptococcus phage Javan348, complete genome	13287-13316	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	AP013418	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S30-C14	28057-28086	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	KY065495	Streptococcus phage IPP58, complete genome	11829-11858	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	AP013674	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48B-MedDCM-OCT-S40-C310, * SEQUENCING IN PROGRESS *	2544-2573	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	KY065470	Streptococcus phage IPP29, complete genome	14086-14115	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	MK448918	Streptococcus phage Javan366, complete genome	12952-12981	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	AP013420	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S42-C26	36845-36874	8	0.733
NZ_CP031274_1	1.3\|147761\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147761-147790	30	KY065494	Streptococcus phage IPP57, complete genome	11829-11858	8	0.733
NZ_CP031274_1	1.6\|147959\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147959-147988	30	MG592417	Vibrio phage 1.033.O._10N.222.49.B8, partial genome	45463-45492	8	0.733
NZ_CP031274_1	1.7\|148025\|31\|NZ_CP031274\|CRISPRCasFinder,CRT	148025-148055	31	NZ_CP018030	Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence	260659-260689	8	0.742
NZ_CP031274_1	1.9\|148157\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	148157-148186	30	MK257744	Thermus phage YS40_Isch, complete genome	90261-90290	8	0.733
NZ_CP031274_1	1.13\|148421\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148421-148450	30	AJ245616	Lactococcus lactis phage BK5-T complete genome	37528-37557	8	0.733
NZ_CP031274_1	1.13\|148421\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148421-148450	30	AF176025	Lactococcus phage BK5-T, complete genome	37528-37557	8	0.733
NZ_CP031274_1	1.17\|148687\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148687-148716	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	909662-909691	8	0.733
NZ_CP031274_1	1.17\|148687\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148687-148716	30	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	300499-300528	8	0.733
NZ_CP031274_1	1.17\|148687\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148687-148716	30	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	302755-302784	8	0.733
NZ_CP031274_1	1.17\|148687\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148687-148716	30	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	302755-302784	8	0.733
NZ_CP031274_1	1.18\|148753\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148753-148782	30	NC_049378	Salmonella phage ST-W77, complete genome	65527-65556	8	0.733
NZ_CP031274_1	1.18\|148753\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148753-148782	30	KJ174318	Salmonella phage vB_SalM_SJ3, complete genome	99963-99992	8	0.733
NZ_CP031274_1	1.20\|148885\|30\|NZ_CP031274\|CRT	148885-148914	30	MN812211	Flavobacterium phage vB_FspS_laban6-1, complete genome	41230-41259	8	0.733
NZ_CP031274_1	1.5\|147893\|30\|NZ_CP031274\|CRISPRCasFinder,CRT	147893-147922	30	NC_019733	Crinalium epipsammum PCC 9333 plasmid pCRI9333.01, complete sequence	3183-3212	9	0.7
NZ_CP031274_1	1.13\|148421\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148421-148450	30	NC_007930	Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence	231281-231310	9	0.7
NZ_CP031274_1	1.13\|148421\|30\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148421-148450	30	CP002037	Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence	231550-231579	9	0.7
NZ_CP031274_2	2.1\|978928\|60\|NZ_CP031274\|CRISPRCasFinder	978928-978987	60	NC_004604	Bacillus megaterium QM B1551 plasmid pBM400, complete sequence	46415-46474	10	0.833
NZ_CP031274_2	2.1\|978928\|60\|NZ_CP031274\|CRISPRCasFinder	978928-978987	60	CP031730	Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence	5218-5277	11	0.817
NZ_CP031274_2	2.1\|978928\|60\|NZ_CP031274\|CRISPRCasFinder	978928-978987	60	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	483786-483845	12	0.8

1. spacer 1.8|148092|29|NZ_CP031274|CRISPRCasFinder,CRT matches to MT724048 (Staphylococcus phage SAP3, partial genome) position: , mismatch: 0, identity: 1.0

agctctacaccctcaacaaccgctgttgt	CRISPR spacer
agctctacaccctcaacaaccgctgttgt	Protospacer
*****************************

2. spacer 1.12|148355|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to MT724048 (Staphylococcus phage SAP3, partial genome) position: , mismatch: 0, identity: 1.0

ttatggattacgtggcttttgttgaggggt	CRISPR spacer
ttatggattacgtggcttttgttgaggggt	Protospacer
******************************

3. spacer 1.22|148093|28|NZ_CP031274|PILER-CR matches to MT724048 (Staphylococcus phage SAP3, partial genome) position: , mismatch: 0, identity: 1.0

gctctacaccctcaacaaccgctgttgt	CRISPR spacer
gctctacaccctcaacaaccgctgttgt	Protospacer
****************************

4. spacer 1.8|148092|29|NZ_CP031274|CRISPRCasFinder,CRT matches to NC_007056 (Staphylococcus phage EW, complete genome) position: , mismatch: 1, identity: 0.966

agctctacaccctcaacaaccgctgttgt	CRISPR spacer
agctctacaccctcaacaatcgctgttgt	Protospacer
*******************.*********

5. spacer 1.8|148092|29|NZ_CP031274|CRISPRCasFinder,CRT matches to AY954959 (Bacteriophage EW, complete genome) position: , mismatch: 1, identity: 0.966

agctctacaccctcaacaaccgctgttgt	CRISPR spacer
agctctacaccctcaacaatcgctgttgt	Protospacer
*******************.*********

6. spacer 1.12|148355|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NC_007056 (Staphylococcus phage EW, complete genome) position: , mismatch: 1, identity: 0.967

ttatggattacgtggcttttgttgaggggt	CRISPR spacer
ttatggattacgtggcgtttgttgaggggt	Protospacer
**************** *************

7. spacer 1.12|148355|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to AY954959 (Bacteriophage EW, complete genome) position: , mismatch: 1, identity: 0.967

ttatggattacgtggcttttgttgaggggt	CRISPR spacer
ttatggattacgtggcgtttgttgaggggt	Protospacer
**************** *************

8. spacer 1.14|148487|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.967

ctgcatcaggtgaagatttaggacaagtaa	CRISPR spacer
ctgcatcaggcgaagatttaggacaagtaa	Protospacer
**********.*******************

9. spacer 1.14|148487|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to MK075001 (Staphylococcus phage phiSP15-1, complete genome) position: , mismatch: 1, identity: 0.967

ctgcatcaggtgaagatttaggacaagtaa	CRISPR spacer
ctgcatctggtgaagatttaggacaagtaa	Protospacer
******* **********************

10. spacer 1.22|148093|28|NZ_CP031274|PILER-CR matches to NC_007056 (Staphylococcus phage EW, complete genome) position: , mismatch: 1, identity: 0.964

gctctacaccctcaacaaccgctgttgt	CRISPR spacer
gctctacaccctcaacaatcgctgttgt	Protospacer
******************.*********

11. spacer 1.22|148093|28|NZ_CP031274|PILER-CR matches to AY954959 (Bacteriophage EW, complete genome) position: , mismatch: 1, identity: 0.964

gctctacaccctcaacaaccgctgttgt	CRISPR spacer
gctctacaccctcaacaatcgctgttgt	Protospacer
******************.*********

12. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.923

caagcacaaatggttgaccatattat	CRISPR spacer
caagcgcaaatggttgaccacattat	Protospacer
*****.**************.*****

13. spacer 1.12|148355|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031279 (Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.933

ttatggattacgtggcttttgttgaggggt	CRISPR spacer
ttatggactacgtggcttttgttgagggat	Protospacer
*******.********************.*

14. spacer 1.15|148553|32|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031273 (Staphylococcus chromogenes strain 17A plasmid unnamed1) position: , mismatch: 2, identity: 0.938

tcggtggttacattatgattggtttgccgaaa	CRISPR spacer
tcggtggttacatcatgattggtttaccgaaa	Protospacer
*************.***********.******

15. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to KT001912 (Bacillus phage Silence, complete genome) position: , mismatch: 2, identity: 0.931

agagcggttgttttacttttcttactacc	CRISPR spacer
aaagcggttgttttactttttttactacc	Protospacer
*.******************.********

16. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.9

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
cgacaagcgcaaatggttgaccacattatt	Protospacer
********.**************.*****.

17. spacer 1.9|148157|30|NZ_CP031274|CRISPRCasFinder,CRT matches to KT001912 (Bacillus phage Silence, complete genome) position: , mismatch: 3, identity: 0.9

aagagcggttgttttacttttcttactacc	CRISPR spacer
taaagcggttgttttactttttttactacc	Protospacer
 *.******************.********

18. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to AY954953 (Bacteriophage 85, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

19. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to NC_007050 (Staphylococcus phage 85, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

20. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to NC_029010 (Staphylococcus phage SA97, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

21. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to AB370205 (Staphylococcus phage phiMR25 DNA, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

22. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to MK801682 (Staphylococcus phage SAP33, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

23. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to MK801683 (Staphylococcus phage SAP40, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

24. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to EU861004 (Staphylococcus phage phiSauS-IPLA88, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

25. spacer 1.23|148158|29|NZ_CP031274|PILER-CR matches to NC_010808 (Staphylococcus phage phiMR25, complete genome) position: , mismatch: 3, identity: 0.897

agagcggttgttttacttttcttactacc	CRISPR spacer
atagcggtagttttacttttcttgctacc	Protospacer
* ****** **************.*****

26. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to KY065458 (Streptococcus phage IPP17, complete genome) position: , mismatch: 4, identity: 0.846

caagcacaaatggttgaccatattat	CRISPR spacer
caagcagaaatggttcaccatatctt	Protospacer
****** ******** *******. *

27. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to MK448914 (Streptococcus phage Javan348, complete genome) position: , mismatch: 4, identity: 0.846

caagcacaaatggttgaccatattat	CRISPR spacer
caagcagaaatggttcaccatatctt	Protospacer
****** ******** *******. *

28. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to KY065495 (Streptococcus phage IPP58, complete genome) position: , mismatch: 4, identity: 0.846

caagcacaaatggttgaccatattat	CRISPR spacer
caagcagaaatggttcaccatatctt	Protospacer
****** ******** *******. *

29. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to KY065470 (Streptococcus phage IPP29, complete genome) position: , mismatch: 4, identity: 0.846

caagcacaaatggttgaccatattat	CRISPR spacer
caagcagaaatggttcaccatatctt	Protospacer
****** ******** *******. *

30. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to MK448918 (Streptococcus phage Javan366, complete genome) position: , mismatch: 4, identity: 0.846

caagcacaaatggttgaccatattat	CRISPR spacer
caagcagaaatggttcaccatatctt	Protospacer
****** ******** *******. *

31. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to KY065494 (Streptococcus phage IPP57, complete genome) position: , mismatch: 4, identity: 0.846

caagcacaaatggttgaccatattat	CRISPR spacer
caagcagaaatggttcaccatatctt	Protospacer
****** ******** *******. *

32. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to AP013674 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48B-MedDCM-OCT-S40-C310, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.808

caagcacaaatggttgaccatattat	CRISPR spacer
caagcacaaatggttcacaatatgta	Protospacer
*************** ** ****

33. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to AP013420 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S42-C26) position: , mismatch: 5, identity: 0.808

caagcacaaatggttgaccatattat	CRISPR spacer
caagcacaaatggttcacaatatgta	Protospacer
*************** ** ****

34. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to AP013419 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S41-C26) position: , mismatch: 5, identity: 0.808

caagcacaaatggttgaccatattat	CRISPR spacer
caagcacaaatggttcacaatatgta	Protospacer
*************** ** ****

35. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to AP013416 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S24-C17) position: , mismatch: 5, identity: 0.808

caagcacaaatggttgaccatattat	CRISPR spacer
caagcacaaatggttcacaatatgta	Protospacer
*************** ** ****

36. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to AP013417 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S26-C25) position: , mismatch: 5, identity: 0.808

caagcacaaatggttgaccatattat	CRISPR spacer
caagcacaaatggttcacaatatgta	Protospacer
*************** ** ****

37. spacer 1.1|147764|26|NZ_CP031274|PILER-CR matches to AP013418 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S30-C14) position: , mismatch: 5, identity: 0.808

caagcacaaatggttgaccatattat	CRISPR spacer
caagcacaaatggttcacaatatgta	Protospacer
*************** ** ****

38. spacer 1.6|147959|30|NZ_CP031274|CRISPRCasFinder,CRT matches to NC_007055 (Staphylococcus phage 37, complete genome) position: , mismatch: 5, identity: 0.833

aaagtcgtgtatcaattgacgcaatccaac	CRISPR spacer
aaagtcgtgtatcaattgatgctcaacaac	Protospacer
*******************.**    ****

39. spacer 1.6|147959|30|NZ_CP031274|CRISPRCasFinder,CRT matches to AY954958 (Bacteriophage 37, complete genome) position: , mismatch: 5, identity: 0.833

aaagtcgtgtatcaattgacgcaatccaac	CRISPR spacer
aaagtcgtgtatcaattgatgctcaacaac	Protospacer
*******************.**    ****

40. spacer 1.17|148687|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NC_048847 (Alteromonas phage vB_AmeM_PT11-V22, complete genome) position: , mismatch: 5, identity: 0.833

-taccgtcttttaattcctctatacggttac	CRISPR spacer
atacc-tcttttagttcctctatacgtttta	Protospacer
 **** *******.************ **

41. spacer 1.14|148487|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to MF417895 (Uncultured Caudovirales phage clone 10AX_1, partial genome) position: , mismatch: 6, identity: 0.8

ctgcatcaggtgaagatttaggacaagtaa	CRISPR spacer
ctgcatctggtgaagatttagcaagcgtat	Protospacer
******* ************* * . ***

42. spacer 1.14|148487|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to MF417909 (Uncultured Caudovirales phage clone 10F_7, partial genome) position: , mismatch: 6, identity: 0.8

ctgcatcaggtgaagatttaggacaagtaa	CRISPR spacer
ctgcatctggtgaagatttagcaagcgtat	Protospacer
******* ************* * . ***

43. spacer 2.1|978928|60|NZ_CP031274|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 6, identity: 0.9

-ccatatcgtaaaatgcgggtgtagtttaatggcaaaacctcagccttccaagctgatgt	CRISPR spacer
gccataac-taaaatgcgggtgtagtttagtggtaaaacctcagccttccaagctgatga	Protospacer
 ***** * ********************.***.*************************

44. spacer 1.4|147827|30|NZ_CP031274|CRISPRCasFinder,CRT matches to NZ_CP030843 (Acidisarcina polymorpha strain SBC82 plasmid pACPOL4, complete sequence) position: , mismatch: 7, identity: 0.767

----ctatcataacgctctttccactgccaggcg	CRISPR spacer
gggattacc----cgctccttccactgccaggcg	Protospacer
    .**.*    *****.***************

45. spacer 1.7|148025|31|NZ_CP031274|CRISPRCasFinder,CRT matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 7, identity: 0.774

agattgttaaacgacgaattggtttaactga	CRISPR spacer
aaattgttaaacaacgaattgatttgtttgt	Protospacer
*.**********.********.***. .**

46. spacer 1.7|148025|31|NZ_CP031274|CRISPRCasFinder,CRT matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 7, identity: 0.774

agattgttaaacgacgaattggtttaactga	CRISPR spacer
aaattgttaaacaacgaattgatttgtttgt	Protospacer
*.**********.********.***. .**

47. spacer 1.14|148487|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017468 (Staphylococcus nepalensis strain JS11 plasmid pSNJS1102, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcatcaggtgaagatttaggacaagtaa	CRISPR spacer
ctgcatcaggtgaagaattaggtactgttt	Protospacer
**************** *****    **

48. spacer 1.18|148753|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028567 (Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pMCR5_045096, complete sequence) position: , mismatch: 7, identity: 0.767

-----acattggtattgcgggtggcggtcaggtgt	CRISPR spacer
tgcgaaca-----attgcgggcggcggtcaggtga	Protospacer
     ***     ********.************

49. spacer 1.20|148885|30|NZ_CP031274|CRT matches to NC_013388 (Staphylococcus sp. CDC25 plasmid SAP018B, complete sequence) position: , mismatch: 7, identity: 0.767

ttaacgttttaaaagcgacacttgaacgct	CRISPR spacer
ttaacgttttaaaatctacactttctcctt	Protospacer
************** * ******   * .*

50. spacer 1.20|148885|30|NZ_CP031274|CRT matches to NC_006663 (Staphylococcus epidermidis RP62A plasmid pSERP, complete sequence) position: , mismatch: 7, identity: 0.767

ttaacgttttaaaagcgacacttgaacgct	CRISPR spacer
ttaacgttttaaaatctacactttctcctt	Protospacer
************** * ******   * .*

51. spacer 1.20|148885|30|NZ_CP031274|CRT matches to NC_013372 (Staphylococcus epidermidis plasmid SAP016A, complete sequence) position: , mismatch: 7, identity: 0.767

ttaacgttttaaaagcgacacttgaacgct	CRISPR spacer
ttaacgttttaaaatctacactttctcctt	Protospacer
************** * ******   * .*

52. spacer 1.20|148885|30|NZ_CP031274|CRT matches to NZ_LR735433 (Staphylococcus epidermidis strain none isolate Se_RP62a-WT plasmid 2) position: , mismatch: 7, identity: 0.767

ttaacgttttaaaagcgacacttgaacgct	CRISPR spacer
ttaacgttttaaaatctacactttctcctt	Protospacer
************** * ******   * .*

53. spacer 1.21|148026|30|NZ_CP031274|PILER-CR matches to NZ_CP018030 (Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence) position: , mismatch: 7, identity: 0.767

gattgttaaacgacgaattggtttaactga	CRISPR spacer
cactattaaaagacgaattggttttactcg	Protospacer
 *.*.***** ************* *** .

54. spacer 1.21|148026|30|NZ_CP031274|PILER-CR matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 7, identity: 0.767

gattgttaaacgacgaattggtttaactga	CRISPR spacer
aattgttaaacaacgaattgatttgtttgt	Protospacer
.**********.********.***. .**

55. spacer 1.21|148026|30|NZ_CP031274|PILER-CR matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 7, identity: 0.767

gattgttaaacgacgaattggtttaactga	CRISPR spacer
aattgttaaacaacgaattgatttgtttgt	Protospacer
.**********.********.***. .**

56. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to KY065458 (Streptococcus phage IPP17, complete genome) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
gttcaagcagaaatggttcaccatatcttt	Protospacer
   ****** ******** *******. *.

57. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to AP013419 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S41-C26) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
tatcaagcacaaatggttcacaatatgtac	Protospacer
.. *************** ** ****   *

58. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to AP013416 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S24-C17) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
tatcaagcacaaatggttcacaatatgtac	Protospacer
.. *************** ** ****   *

59. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to AP013417 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S26-C25) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
tatcaagcacaaatggttcacaatatgtac	Protospacer
.. *************** ** ****   *

60. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to MK448914 (Streptococcus phage Javan348, complete genome) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
gttcaagcagaaatggttcaccatatcttt	Protospacer
   ****** ******** *******. *.

61. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to AP013418 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S30-C14) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
tatcaagcacaaatggttcacaatatgtac	Protospacer
.. *************** ** ****   *

62. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to KY065495 (Streptococcus phage IPP58, complete genome) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
gttcaagcagaaatggttcaccatatcttt	Protospacer
   ****** ******** *******. *.

63. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to AP013674 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48B-MedDCM-OCT-S40-C310, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
tatcaagcacaaatggttcacaatatgtac	Protospacer
.. *************** ** ****   *

64. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to KY065470 (Streptococcus phage IPP29, complete genome) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
gttcaagcagaaatggttcaccatatcttt	Protospacer
   ****** ******** *******. *.

65. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to MK448918 (Streptococcus phage Javan366, complete genome) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
gttcaagcagaaatggttcaccatatcttt	Protospacer
   ****** ******** *******. *.

66. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to AP013420 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48B-MedDCM-OCT-S42-C26) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
tatcaagcacaaatggttcacaatatgtac	Protospacer
.. *************** ** ****   *

67. spacer 1.3|147761|30|NZ_CP031274|CRISPRCasFinder,CRT matches to KY065494 (Streptococcus phage IPP57, complete genome) position: , mismatch: 8, identity: 0.733

cgacaagcacaaatggttgaccatattatc	CRISPR spacer
gttcaagcagaaatggttcaccatatcttt	Protospacer
   ****** ******** *******. *.

68. spacer 1.6|147959|30|NZ_CP031274|CRISPRCasFinder,CRT matches to MG592417 (Vibrio phage 1.033.O._10N.222.49.B8, partial genome) position: , mismatch: 8, identity: 0.733

aaagtcgtgtatcaattgacgcaatccaac	CRISPR spacer
tccctcacgtatcaattgacgcattccaat	Protospacer
    **..*************** *****.

69. spacer 1.7|148025|31|NZ_CP031274|CRISPRCasFinder,CRT matches to NZ_CP018030 (Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence) position: , mismatch: 8, identity: 0.742

agattgttaaacgacgaattggtttaactga	CRISPR spacer
ccactattaaaagacgaattggttttactcg	Protospacer
  *.*.***** ************* *** .

70. spacer 1.9|148157|30|NZ_CP031274|CRISPRCasFinder,CRT matches to MK257744 (Thermus phage YS40_Isch, complete genome) position: , mismatch: 8, identity: 0.733

aagagcggttgttttacttttcttactacc	CRISPR spacer
aagagcggttgttttacattttggacactt	Protospacer
***************** ***.  **  ..

71. spacer 1.13|148421|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to AJ245616 (Lactococcus lactis phage BK5-T complete genome) position: , mismatch: 8, identity: 0.733

taaggaggggatattgaatgaaaagaacaa	CRISPR spacer
taaggagggtatattgaatgaccgacaaac	Protospacer
********* ***********  .. * *

72. spacer 1.13|148421|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to AF176025 (Lactococcus phage BK5-T, complete genome) position: , mismatch: 8, identity: 0.733

taaggaggggatattgaatgaaaagaacaa	CRISPR spacer
taaggagggtatattgaatgaccgacaaac	Protospacer
********* ***********  .. * *

73. spacer 1.17|148687|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

taccgtcttttaattcctctatacggttac	CRISPR spacer
taccgtcttttaagtcctctaaataaacaa	Protospacer
************* ******* *... .*

74. spacer 1.17|148687|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.733

taccgtcttttaattcctctatacggttac	CRISPR spacer
taccgtcttttaattcttcgatatcttgtt	Protospacer
****************.** ***.  *  .

75. spacer 1.17|148687|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.733

taccgtcttttaattcctctatacggttac	CRISPR spacer
taccgtcttttaattcttcgatatcttgtt	Protospacer
****************.** ***.  *  .

76. spacer 1.17|148687|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.733

taccgtcttttaattcctctatacggttac	CRISPR spacer
taccgtcttttaattcttcgatatcttgtt	Protospacer
****************.** ***.  *  .

77. spacer 1.18|148753|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NC_049378 (Salmonella phage ST-W77, complete genome) position: , mismatch: 8, identity: 0.733

acattggtattgcgggtggcggtcaggtgt	CRISPR spacer
gcattggtattgagggtggcggaaaccact	Protospacer
.*********** *********  *    *

78. spacer 1.18|148753|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to KJ174318 (Salmonella phage vB_SalM_SJ3, complete genome) position: , mismatch: 8, identity: 0.733

acattggtattgcgggtggcggtcaggtgt	CRISPR spacer
gcattggtattgagggtggcggaaaccact	Protospacer
.*********** *********  *    *

79. spacer 1.20|148885|30|NZ_CP031274|CRT matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 8, identity: 0.733

ttaacgttttaaaagcgacacttgaacgct	CRISPR spacer
gacctgttttaaaagcaacacttgaacaat	Protospacer
    .***********.**********. *

80. spacer 1.5|147893|30|NZ_CP031274|CRISPRCasFinder,CRT matches to NC_019733 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.01, complete sequence) position: , mismatch: 9, identity: 0.7

tttgagtcaaatggcgtagcgtttagaagt	CRISPR spacer
attgattcaaatggcgtagcgtctgactta	Protospacer
 **** ****************.*..

81. spacer 1.13|148421|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NC_007930 (Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence) position: , mismatch: 9, identity: 0.7

taaggaggggatattgaatgaaaagaacaa	CRISPR spacer
aaaggagaggatattgaatgaaatttttcc	Protospacer
 ******.***************    .

82. spacer 1.13|148421|30|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to CP002037 (Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence) position: , mismatch: 9, identity: 0.7

taaggaggggatattgaatgaaaagaacaa	CRISPR spacer
aaaggagaggatattgaatgaaatttttcc	Protospacer
 ******.***************    .

83. spacer 2.1|978928|60|NZ_CP031274|CRISPRCasFinder matches to NC_004604 (Bacillus megaterium QM B1551 plasmid pBM400, complete sequence) position: , mismatch: 10, identity: 0.833

ccatatcgtaaaatgcgggtgtagtttaatggcaaaacctcagccttccaagctgatgtt	CRISPR spacer
ttttaagaaaacatgcgggtgtagtttaatggtaaaacctcagccttccaagctgatgtc	Protospacer
.. **  . ** ********************.**************************.

84. spacer 2.1|978928|60|NZ_CP031274|CRISPRCasFinder matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.817

ccatatcgtaaaat---gcgggtgtagtttaatggcaaaacctcagccttccaagctgat	CRISPR spacer
---tttttaaaaataaagcgggtgtagtttaatggtaaaacctcagccttccaagctgat	Protospacer
   * *.  *****   ******************.************************

85. spacer 2.1|978928|60|NZ_CP031274|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.8

ccatatcgtaaaatgcgggtgtagtttaatggcaaaacctcagccttccaagctgatgtt	CRISPR spacer
aaacttttaaccatgcgggtgtagtttagtggtaaaacctcagccttccaagctgatgat	Protospacer
  *. *.  *  ****************.***.************************* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

985125 : 1009147

Staphylococcus_phage(90.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145400713.1\|985125_985872_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.3e-18	30.2
WP_103158796.1\|986184_986736_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
WP_037574531.1\|986756_986999_+	DUF2273 domain-containing protein	NA	NA	NA	NA
WP_145400714.1\|987046_987541_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_145400715.1\|987790_989200_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.8e-130	50.1
WP_107366603.1\|989196_990186_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.1e-77	44.4
WP_037574520.1\|990182_990413_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	8.5e-30	78.1
WP_037574517.1\|990475_990940_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.6e-38	51.6
WP_103158795.1\|990950_991712_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.5e-86	61.5
WP_145400716.1\|991747_993328_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.2e-241	75.6
WP_037574511.1\|993760_994960_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.0e-178	80.6
WP_037574509.1\|995049_995958_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	4.5e-90	66.5
WP_103158792.1\|996207_997044_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.9e-113	69.7
WP_145400717.1\|997175_997550_-	CrcB family protein	NA	NA	NA	NA
WP_037574504.1\|997546_997912_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.4e-18	44.6
WP_037574501.1\|997929_998232_-	hypothetical protein	NA	NA	NA	NA
WP_145400718.1\|998381_999092_+	transaldolase	M1PR54	Cyanophage	5.3e-22	37.5
WP_145400719.1\|999192_999645_+	hypothetical protein	NA	NA	NA	NA
WP_145400720.1\|999624_1000062_-	hypothetical protein	NA	NA	NA	NA
WP_145400721.1\|1000070_1000538_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	5.6e-20	44.0
WP_037574491.1\|1000733_1000958_+	hypothetical protein	NA	NA	NA	NA
WP_037574490.1\|1001120_1001987_+	autolysin	A0A1W6JQU5	Staphylococcus_phage	9.3e-37	37.9
WP_145400722.1\|1002520_1004149_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.4e-12	62.7
WP_145400723.1\|1004539_1005586_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.7e-107	53.2
WP_037574483.1\|1005590_1006220_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-57	55.7
WP_037574481.1\|1006233_1007415_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.5e-150	65.4
WP_037574478.1\|1007432_1007891_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-53	68.0
WP_084276030.1\|1008100_1009147_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.4e-124	68.3

DBSCAN-SWA_2

1012775 : 1020243

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037574463.1\|1012775_1013348_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	1.8e-60	58.3
WP_145400727.1\|1013344_1014304_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-63	80.3
WP_145400728.1\|1014415_1015597_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	4.5e-135	63.4
WP_145400729.1\|1015960_1018372_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	80.2
WP_145400730.1\|1018398_1018710_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	3.8e-33	68.9
WP_145400731.1\|1018980_1020243_-	aminoacetone oxidase family FAD-binding enzyme	A0A2H4PQX1	Staphylococcus_phage	3.1e-33	77.8

DBSCAN-SWA_3

1129330 : 1138507

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037574221.1\|1129330_1130326_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	7.5e-06	29.9
WP_145400799.1\|1130343_1131369_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_145400800.1\|1131387_1132527_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.1e-88	45.8
WP_037574211.1\|1132542_1132806_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.0e-08	52.6
WP_145400801.1\|1133174_1135454_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.4e-28	32.4
WP_145400802.1\|1135694_1137977_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.9e-71	30.5
WP_037574204.1\|1137988_1138507_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.2e-26	48.0

DBSCAN-SWA_4

1664863 : 1673290

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145401094.1\|1664863_1665430_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.8e-28	38.5
WP_145401095.1\|1665432_1666461_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	42.2
WP_145401096.1\|1666465_1667887_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-50	33.4
WP_145401097.1\|1667865_1670055_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.1e-133	38.5
WP_145401098.1\|1670047_1670719_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_037571855.1\|1670718_1670988_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_037571857.1\|1670989_1671697_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	2.1e-47	41.6
WP_105963381.1\|1671693_1672821_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_145401099.1\|1672807_1673290_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.8e-21	43.3

DBSCAN-SWA_5

1702954 : 1771240

Staphylococcus_phage(57.41%)

capsid,protease,holin,transposase,tail,terminase,portal,integrase,head

attL 1702803:1702862|attR 1765080:1766568

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1702803:1702862	attL	NA	NA	NA	NA
WP_145401813.1\|1702954_1704253_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	4.2e-09	20.9
WP_145401117.1\|1704648_1705656_+	acyltransferase family protein	NA	NA	NA	NA
WP_145401119.1\|1705727_1706894_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_105986000.1\|1706986_1707805_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_145401121.1\|1707797_1708613_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_145401123.1\|1708599_1710273_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_145401125.1\|1710274_1711627_-	isochorismate synthase	NA	NA	NA	NA
WP_107359667.1\|1711801_1712740_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_145401127.1\|1713536_1714184_-	ATP-binding cassette domain-containing protein	F2Y2R6	Organic_Lake_phycodnavirus	1.9e-18	28.8
WP_145401129.1\|1714195_1714753_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_145401130.1\|1714984_1716208_-	Fic family protein	Q9AZ49	Lactococcus_phage	2.4e-46	31.4
WP_105963369.1\|1719176_1720622_-	CHAP domain-containing protein	Q4ZC44	Staphylococcus_virus	2.7e-267	90.2
WP_105963368.1\|1720602_1721037_-\|holin	phage holin	Q4ZC45	Staphylococcus_virus	1.6e-66	89.6
WP_037571969.1\|1721158_1721452_-	DUF2951 family protein	A0A1W6JPB3	Staphylococcus_phage	1.7e-27	67.0
WP_107372035.1\|1721472_1721775_-	hypothetical protein	A0A1J0MFP4	Staphylococcus_phage	4.4e-34	80.5
WP_145399775.1\|1721945_1725959_-	hypothetical protein	A0A1J0MG20	Staphylococcus_phage	0.0e+00	45.8
WP_145399778.1\|1725960_1727451_-\|tail	phage tail protein	A0A1J0MFV2	Staphylococcus_phage	1.3e-203	66.7
WP_145401132.1\|1727450_1732172_-\|tail	phage tail tape measure protein	Q4ZD65	Staphylococcus_phage	0.0e+00	71.1
WP_145401134.1\|1732173_1733367_-	hypothetical protein	Q4ZD65	Staphylococcus_phage	8.7e-17	81.0
WP_145401136.1\|1733608_1733971_-	hypothetical protein	Q4ZD67	Staphylococcus_phage	4.0e-50	83.2
WP_145401138.1\|1734214_1735111_-	hypothetical protein	Q4ZD69	Staphylococcus_phage	4.5e-127	78.9
WP_145401140.1\|1735123_1735525_-	hypothetical protein	Q4ZD70	Staphylococcus_phage	3.6e-60	82.7
WP_145401142.1\|1735521_1735923_-	hypothetical protein	Q4ZD71	Staphylococcus_phage	9.3e-48	67.7
WP_119523773.1\|1735919_1736282_-\|head,tail	phage head-tail adapter protein	Q4ZD72	Staphylococcus_phage	1.8e-58	84.2
WP_145401144.1\|1736265_1736568_-\|head,tail	phage head-tail adapter protein	Q4ZD73	Staphylococcus_phage	1.7e-30	68.5
WP_145401146.1\|1736583_1737756_-\|capsid	phage major capsid protein	A0A2H4J5D0	uncultured_Caudovirales_phage	1.8e-168	80.5
WP_145401148.1\|1737814_1738633_-\|protease	Clp protease ClpP	Q4ZD75	Staphylococcus_phage	1.5e-92	65.6
WP_145401150.1\|1738613_1739780_-\|portal	phage portal protein	Q4ZD76	Staphylococcus_phage	8.4e-182	80.4
WP_145401152.1\|1739795_1741457_-\|terminase	terminase large subunit	A0A2H4J5C2	uncultured_Caudovirales_phage	1.2e-290	86.1
WP_107383286.1\|1741453_1741801_-	hypothetical protein	Q4ZD78	Staphylococcus_phage	2.2e-53	90.4
WP_145401154.1\|1741961_1742285_-	HNH endonuclease	Q4ZD22	Staphylococcus_phage	8.3e-39	74.8
WP_145401157.1\|1742486_1742882_-	hypothetical protein	A0A2H4JC92	uncultured_Caudovirales_phage	1.3e-57	84.7
WP_107383284.1\|1743105_1743609_-	dUTPase	A0A1J0MF52	Staphylococcus_phage	4.7e-57	68.7
WP_107383283.1\|1743609_1743789_-	hypothetical protein	Q4ZD38	Staphylococcus_phage	2.1e-20	81.4
WP_107383282.1\|1743898_1744213_+	DUF4870 domain-containing protein	A0A2H4JDX0	uncultured_Caudovirales_phage	6.8e-14	45.0
WP_145399747.1\|1744240_1744453_-	hypothetical protein	Q4ZC11	Staphylococcus_virus	3.9e-21	67.1
WP_145399748.1\|1744452_1744677_-	hypothetical protein	NA	NA	NA	NA
WP_145399751.1\|1744688_1744916_-	DUF3310 domain-containing protein	A0A0D4DCF1	Staphylococcus_phage	7.8e-28	81.4
WP_145399753.1\|1744908_1745094_-	hypothetical protein	Q4ZC13	Staphylococcus_virus	6.0e-18	71.9
WP_145399755.1\|1745093_1745330_-	hypothetical protein	NA	NA	NA	NA
WP_145399757.1\|1745345_1745588_-	hypothetical protein	Q4ZC14	Staphylococcus_virus	9.6e-08	48.3
WP_103158826.1\|1745589_1745898_-	VRR-NUC domain-containing protein	A0A1X9I642	Streptococcus_phage	4.5e-26	63.0
WP_037567961.1\|1745894_1746098_-	hypothetical protein	H9A0M1	Staphylococcus_phage	4.9e-05	47.3
WP_145401158.1\|1746392_1748711_-	DNA primase	Q8W5V7	Listeria_phage	3.4e-195	46.9
WP_145399759.1\|1748741_1749239_-	DUF669 domain-containing protein	A8ATF2	Listeria_phage	3.6e-33	45.2
WP_119511164.1\|1749255_1750590_-	DEAD/DEAH box helicase	Q9T1H9	Lactobacillus_phage	1.2e-110	46.4
WP_119511166.1\|1750573_1751284_-	AAA family ATPase	A0A1W6JQH5	Staphylococcus_phage	4.0e-110	80.7
WP_119511168.1\|1751283_1751769_-	siphovirus Gp157 family protein	A0A2H4JD18	uncultured_Caudovirales_phage	9.5e-47	60.2
WP_119511170.1\|1751765_1752032_-	DUF1108 family protein	A0A223LH15	Staphylococcus_phage	2.0e-06	33.3
WP_105963635.1\|1752283_1752496_-	hypothetical protein	A0A1W6JNP3	Staphylococcus_phage	3.8e-24	73.9
WP_105985971.1\|1752745_1752979_-	hypothetical protein	NA	NA	NA	NA
WP_105963625.1\|1753043_1753424_+	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	6.7e-56	81.7
WP_037572072.1\|1753410_1753608_-	hypothetical protein	A0A1Q1PVT5	Staphylococcus_phage	1.6e-13	72.0
WP_142813276.1\|1753619_1754159_-	hypothetical protein	A0A2H4J1Z3	uncultured_Caudovirales_phage	9.3e-27	39.5
WP_145399760.1\|1754151_1755081_-	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.1e-75	71.0
WP_145399762.1\|1755109_1755322_-	helix-turn-helix domain-containing protein	A0A059T617	Staphylococcus_phage	8.1e-11	51.6
WP_145399764.1\|1755485_1755824_+	helix-turn-helix domain-containing protein	A0A059T5A2	Staphylococcus_phage	1.1e-28	55.4
WP_145399766.1\|1755843_1756305_+	ImmA/IrrE family metallo-endopeptidase	A0A2I6PE92	Staphylococcus_phage	1.1e-57	65.8
WP_145399768.1\|1756319_1756934_+	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_107367294.1\|1757904_1758342_+	DUF4231 domain-containing protein	A0A1J0MFR0	Staphylococcus_phage	2.0e-67	88.3
WP_145399770.1\|1758335_1758743_+	TIR domain-containing protein	A0A2H4J496	uncultured_Caudovirales_phage	2.2e-68	91.9
WP_107367292.1\|1758739_1758937_-	hypothetical protein	A0A2H4JBN9	uncultured_Caudovirales_phage	3.6e-29	96.9
WP_145399772.1\|1759043_1760093_+\|integrase	tyrosine-type recombinase/integrase	W5R968	Staphylococcus_phage	3.2e-156	75.1
WP_107369887.1\|1760464_1760875_-	YolD-like family protein	U3PG23	Staphylococcus_phage	1.6e-23	47.7
WP_145401160.1\|1761033_1761483_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_145401162.1\|1761877_1762516_-	competence protein ComK	NA	NA	NA	NA
WP_037572099.1\|1762742_1762970_+	IDEAL domain-containing protein	NA	NA	NA	NA
WP_105965904.1\|1763037_1764030_-	lipoate--protein ligase	NA	NA	NA	NA
WP_037572105.1\|1764204_1764390_+	DUF2187 family protein	NA	NA	NA	NA
WP_103159397.1\|1764396_1764999_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_145401813.1\|1765231_1766530_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	4.2e-09	20.9
WP_145401164.1\|1766576_1768082_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
1765080:1766568	attR	NA	NA	NA	NA
WP_145401166.1\|1768251_1769610_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_107363632.1\|1769626_1771240_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.9e-14	27.6

DBSCAN-SWA_6

1896122 : 1909882

Staphylococcus_phage(53.33%)

integrase,coat,terminase

attL 1888658:1888673|attR 1916554:1916569

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1888658:1888673	attL	NA	NA	NA	NA
WP_145401280.1\|1896122_1896593_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	5.2e-58	69.9
WP_145401282.1\|1896589_1896934_-	pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	2.0e-35	64.0
WP_145401284.1\|1896936_1897464_-\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	7.1e-64	74.3
WP_145401286.1\|1897515_1898172_-	hypothetical protein	Q4ZE82	Staphylococcus_phage	1.2e-28	30.7
WP_145401288.1\|1898199_1898544_-	pathogenicity island protein	A0A1W6JQF3	Staphylococcus_phage	3.6e-56	97.4
WP_145401290.1\|1899433_1900075_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	2.6e-92	77.0
WP_107378474.1\|1900071_1900425_-	pathogenicity island protein	A0A2H4JBD4	uncultured_Caudovirales_phage	1.8e-42	67.0
WP_145401291.1\|1900671_1902027_-	DNA primase	A0A2H4JBE3	uncultured_Caudovirales_phage	1.6e-232	87.8
WP_145401293.1\|1902038_1902902_-	mobile element-associated protein	A0A2H4JEH3	uncultured_Caudovirales_phage	1.8e-112	67.5
WP_145401295.1\|1902989_1903286_-	DUF1474 family protein	A0A2H4JB50	uncultured_Caudovirales_phage	1.8e-16	41.1
WP_145401854.1\|1903285_1903696_-	pathogenicity island protein	NA	NA	NA	NA
WP_145401297.1\|1904004_1904220_-	helix-turn-helix domain-containing protein	A0A0S2GLE9	Bacillus_phage	3.0e-05	42.1
WP_145401300.1\|1904258_1904462_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145401302.1\|1904595_1905390_+	helix-turn-helix domain-containing protein	H9A0L8	Staphylococcus_phage	2.0e-09	53.7
WP_145401856.1\|1905399_1906506_+\|integrase	tyrosine-type recombinase/integrase	H0UST3	Bacillus_phage	2.0e-76	43.9
WP_037572408.1\|1907046_1907511_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.2e-70	88.3
WP_145401304.1\|1907527_1909882_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.6e-93	38.2
1916554:1916569	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1962826 : 1972432

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145401364.1\|1962826_1964932_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	86.0
WP_037572538.1\|1964903_1965293_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.0e-43	64.3
WP_037572541.1\|1965975_1966848_+	DMT family transporter	NA	NA	NA	NA
WP_037572545.1\|1966870_1967371_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.7e-52	71.5
WP_145401366.1\|1967547_1969059_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	9.5e-69	34.6
WP_145401368.1\|1969297_1970224_+	YegS/Rv2252/BmrU family lipid kinase	A0A1V0SBJ0	Catovirus	7.5e-08	21.3
WP_037572553.1\|1970784_1971312_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_145401370.1\|1971382_1972432_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.5e-20	26.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP031273

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

53 : 35777

Staphylococcus_phage(55.56%)

integrase,holin,tail

attL 10977:10992|attR 26490:26505

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145399745.1\|53_323_-	HNH endonuclease	A0A2H4JAW8	uncultured_Caudovirales_phage	1.1e-31	72.4
WP_107383284.1\|1194_1698_-	dUTPase	A0A1J0MF52	Staphylococcus_phage	4.7e-57	68.7
WP_107383282.1\|1986_2301_+	DUF4870 domain-containing protein	A0A2H4JDX0	uncultured_Caudovirales_phage	6.8e-14	45.0
WP_145399747.1\|2327_2540_-	hypothetical protein	Q4ZC11	Staphylococcus_virus	3.9e-21	67.1
WP_145399748.1\|2539_2764_-	hypothetical protein	NA	NA	NA	NA
WP_145399751.1\|2775_3003_-	DUF3310 domain-containing protein	A0A0D4DCF1	Staphylococcus_phage	7.8e-28	81.4
WP_145399753.1\|2995_3181_-	hypothetical protein	Q4ZC13	Staphylococcus_virus	6.0e-18	71.9
WP_145399755.1\|3180_3417_-	hypothetical protein	NA	NA	NA	NA
WP_145399757.1\|3432_3675_-	hypothetical protein	NA	NA	NA	NA
WP_103158826.1\|3676_3985_-	VRR-NUC domain-containing protein	A0A1X9I642	Streptococcus_phage	4.5e-26	63.0
WP_145399759.1\|6826_7324_-	DUF669 domain-containing protein	A8ATF2	Listeria_phage	3.6e-33	45.2
WP_119511164.1\|7340_8675_-	DEAD/DEAH box helicase	Q9T1H9	Lactobacillus_phage	1.2e-110	46.4
WP_119511166.1\|8658_9369_-	AAA family ATPase	A0A1W6JQH5	Staphylococcus_phage	4.0e-110	80.7
WP_119511168.1\|9368_9854_-	siphovirus Gp157 family protein	A0A2H4JD18	uncultured_Caudovirales_phage	9.5e-47	60.2
WP_119511170.1\|9850_10117_-	DUF1108 family protein	Q4ZDY8	Staphylococcus_virus	7.8e-11	38.1
WP_105963635.1\|10368_10581_-	hypothetical protein	A0A1W6JNP3	Staphylococcus_phage	3.8e-24	73.9
WP_105985971.1\|10830_11064_-	hypothetical protein	NA	NA	NA	NA
10977:10992	attL	NA	NA	NA	NA
WP_105963625.1\|11128_11509_+	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	6.7e-56	81.7
WP_037572072.1\|11495_11693_-	hypothetical protein	A0A1Q1PVT5	Staphylococcus_phage	1.6e-13	72.0
WP_142813276.1\|11704_12244_-	hypothetical protein	A0A2H4J1Z3	uncultured_Caudovirales_phage	9.3e-27	39.5
WP_145399760.1\|12236_13166_-	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.1e-75	71.0
WP_145399762.1\|13194_13407_-	helix-turn-helix domain-containing protein	A0A059T617	Staphylococcus_phage	8.1e-11	51.6
WP_145399764.1\|13570_13909_+	helix-turn-helix domain-containing protein	A0A059T5A2	Staphylococcus_phage	1.1e-28	55.4
WP_145399766.1\|13928_14390_+	ImmA/IrrE family metallo-endopeptidase	A0A2I6PE92	Staphylococcus_phage	1.1e-57	65.8
WP_145399768.1\|14404_15019_+	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_107367294.1\|15989_16427_+	DUF4231 domain-containing protein	A0A1J0MFR0	Staphylococcus_phage	2.0e-67	88.3
WP_145399770.1\|16420_16828_+	TIR domain-containing protein	A0A2H4J496	uncultured_Caudovirales_phage	2.2e-68	91.9
WP_107367292.1\|16824_17022_-	hypothetical protein	A0A2H4JBN9	uncultured_Caudovirales_phage	3.6e-29	96.9
WP_145399772.1\|17128_18178_+\|integrase	tyrosine-type recombinase/integrase	W5R968	Staphylococcus_phage	3.2e-156	75.1
WP_105963369.1\|20532_21978_-	CHAP domain-containing protein	Q4ZC44	Staphylococcus_virus	2.7e-267	90.2
WP_105963368.1\|21958_22393_-\|holin	phage holin	Q4ZC45	Staphylococcus_virus	1.6e-66	89.6
WP_037571969.1\|22514_22808_-	DUF2951 family protein	A0A1W6JPB3	Staphylococcus_phage	1.7e-27	67.0
WP_107372035.1\|22828_23131_-	hypothetical protein	A0A1J0MFP4	Staphylococcus_phage	4.4e-34	80.5
WP_145399775.1\|23301_27315_-	hypothetical protein	A0A1J0MG20	Staphylococcus_phage	0.0e+00	45.8
26490:26505	attR	NA	NA	NA	NA
WP_145399778.1\|27316_28807_-\|tail	phage tail protein	A0A1J0MFV2	Staphylococcus_phage	1.3e-203	66.7
WP_145399781.1\|28806_30516_-	peptidoglycan DD-metalloendopeptidase family protein	Q4ZD65	Staphylococcus_phage	3.6e-234	72.6
WP_145399783.1\|30527_30818_-	hypothetical protein	NA	NA	NA	NA
WP_145399786.1\|31252_32548_-\|tail	phage tail tape measure protein	Q4ZD65	Staphylococcus_phage	4.4e-123	67.0
WP_145399788.1\|32493_32679_-	hypothetical protein	Q4ZD65	Staphylococcus_phage	9.9e-13	65.0
WP_145399791.1\|33017_33524_-	hypothetical protein	A0A2H4J8X5	uncultured_Caudovirales_phage	6.2e-49	65.4
WP_145399794.1\|33532_33766_-	hypothetical protein	NA	NA	NA	NA
WP_145399796.1\|33762_34032_-	hypothetical protein	NA	NA	NA	NA
WP_145399799.1\|34293_34713_-	hypothetical protein	Q4ZD65	Staphylococcus_phage	5.7e-24	65.6
WP_145399802.1\|35582_35777_-	hypothetical protein	Q4ZD69	Staphylococcus_phage	4.5e-08	55.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP031273.1|WP_119511170.1|9850_10117_-|DUF1108-family-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP031273.1|WP_119511170.1|9850_10117_-|DUF1108-family-protein

9850_10117_-

88 aa aa

53-35777

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP031274_1	TypeII	1.15\|148553\|32\|NZ_CP031274\|CRISPRCasFinder,CRT,PILER-CR	148553-148584	32	2479-2448	2

1. spacer 1.15|148553|32|NZ_CP031274|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031273 position: 2479-2448, mismatch: 2

tcggtggttacattatgattggtttgccgaaa	CRISPR spacer
tcggtggttacatcatgattggtttaccgaaa	Protospacer
*************.***********.******

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031274

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP031273

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information