CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP031277	Staphylococcus hominis strain 19A chromosome, complete genome	0 crisprs	csa3,WYL,DEDDh,cas3,DinG	8
NZ_CP031278	Staphylococcus hominis strain 19A plasmid unnamed1, complete sequence	0 crisprs	NA	0
NZ_CP031279	Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

410822 : 467232

Bacillus_phage(25.0%)

protease,transposase,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145426898.1\|410822_412526_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	7.3e-243	77.0
WP_002448625.1\|413425_413707_-	N-acetyltransferase	NA	NA	NA	NA
WP_049420752.1\|413888_414845_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_145424013.1\|414905_416330_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_070443824.1\|416405_417491_-	hypothetical protein	NA	NA	NA	NA
WP_017175040.1\|417772_419557_+	sodium:proton antiporter	NA	NA	NA	NA
WP_048762230.1\|419610_421575_-	fructose-bisphosphatase class III	NA	NA	NA	NA
WP_002448460.1\|421720_422332_-	DedA family protein	NA	NA	NA	NA
WP_019834970.1\|422449_423448_-	thiamine/molybdopterin biosynthesis protein	NA	NA	NA	NA
WP_019834971.1\|423447_424215_-	thiazole synthase	NA	NA	NA	NA
WP_017175036.1\|424216_424417_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_049382419.1\|424400_425516_-	glycine oxidase ThiO	NA	NA	NA	NA
WP_048679547.1\|425508_426099_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_017175033.1\|426623_427904_+	MFS transporter	NA	NA	NA	NA
WP_048679552.1\|428081_428366_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_049413689.1\|428443_430399_+	FUSC family protein	NA	NA	NA	NA
WP_048683330.1\|430471_430885_+	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_048762219.1\|431040_431742_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_048680193.1\|431866_432742_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_048762218.1\|432833_433556_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_019834981.1\|433672_434353_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_019834982.1\|434375_435914_+	gluconokinase	NA	NA	NA	NA
WP_061815440.1\|435957_437313_+	gluconate permease	NA	NA	NA	NA
WP_071560814.1\|437470_438337_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	2.9e-78	51.9
WP_002448322.1\|438867_440112_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	8.1e-42	30.9
WP_145424019.1\|440198_440969_-	hypothetical protein	NA	NA	NA	NA
WP_002448449.1\|441363_441555_+	hypothetical protein	NA	NA	NA	NA
WP_049334717.1\|441710_441995_-	DUF1413 domain-containing protein	NA	NA	NA	NA
WP_070582903.1\|442150_442846_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_145424021.1\|442970_444203_+	acetylornithine deacetylase	NA	NA	NA	NA
WP_145424023.1\|444259_446425_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA
WP_145424025.1\|446527_448069_-	exopolyphosphatase	NA	NA	NA	NA
WP_048680970.1\|448284_449103_+	SDR family oxidoreductase	L7RG25	Acanthamoeba_polyphaga_moumouvirus	2.6e-12	27.1
WP_048762204.1\|449490_450567_-	M42 family metallopeptidase	NA	NA	NA	NA
WP_048681147.1\|450728_451190_+	DUF1307 domain-containing protein	NA	NA	NA	NA
WP_048762202.1\|451243_452824_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_145424027.1\|453008_453791_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_048762199.1\|453813_454623_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_049382411.1\|454752_455415_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.9e-20	34.3
WP_019835004.1\|455407_456184_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_049382410.1\|456315_457491_+	MFS transporter	NA	NA	NA	NA
WP_049382409.1\|457539_458889_-	carboxylesterase/lipase family protein	K7YIA2	Megavirus	4.0e-18	32.2
WP_049379308.1\|458990_460634_-	APC family permease	NA	NA	NA	NA
WP_029376761.1\|460932_461988_-	2,3-butanediol dehydrogenase	A0A2K9L7I1	Tupanvirus	1.4e-10	24.5
WP_049382408.1\|462435_463734_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.4e-20	52.7
WP_017174996.1\|463733_464369_+	ABC transporter permease	NA	NA	NA	NA
WP_049382407.1\|464393_465332_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_049382406.1\|465334_466012_+	ABC transporter permease	NA	NA	NA	NA
WP_049382405.1\|466075_466777_-\|holin	antiholin-like protein LrgB	NA	NA	NA	NA
WP_049382404.1\|466776_467232_-\|holin	antiholin-like murein hydrolase modulator LrgA	NA	NA	NA	NA

DBSCAN-SWA_2

808439 : 843650

Staphylococcus_phage(28.57%)

protease,transposase,integrase,portal,tail,tRNA,head,capsid,terminase

attL 804678:804693|attR 846373:846388

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
804678:804693	attL	NA	NA	NA	NA
WP_017175288.1\|808439_808901_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_048761685.1\|808881_809547_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_049434599.1\|809519_809984_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_019835766.1\|809976_811002_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.0e-62	41.8
WP_145424091.1\|811339_813277_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.6e-49	29.4
WP_017175284.1\|813522_814161_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_145426929.1\|814175_815846_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	7.1e-243	77.0
WP_049413898.1\|816408_817653_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	6.7e-36	28.7
WP_145426933.1\|817907_819395_+	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	4.0e-19	26.3
WP_049434601.1\|819395_820355_+	carbohydrate kinase	NA	NA	NA	NA
WP_002455088.1\|820405_821122_-	response regulator transcription factor	A0A2H4J4Z6	uncultured_Caudovirales_phage	6.5e-28	34.3
WP_019835518.1\|821134_822424_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_145424041.1\|822447_822588_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_070663366.1\|822584_823157_-	accessory gene regulator AgrB	NA	NA	NA	NA
WP_145424039.1\|823858_824644_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA
WP_145426936.1\|824774_825398_-	nitroreductase family protein	NA	NA	NA	NA
WP_145426939.1\|825575_827087_+	hypothetical protein	NA	NA	NA	NA
WP_037541691.1\|827142_827883_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_017175272.1\|828057_828345_+	co-chaperone GroES	A0A221S386	uncultured_virus	5.3e-13	48.9
WP_017175271.1\|828401_830021_+	chaperonin GroEL	A0A240F779	uncultured_virus	2.0e-157	54.6
WP_145426942.1\|830089_831265_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JBC4	uncultured_Caudovirales_phage	1.2e-212	95.7
WP_145426945.1\|831273_831858_-	helix-turn-helix domain-containing protein	A0A1W6JPB6	Staphylococcus_phage	2.8e-13	31.1
WP_081323982.1\|831929_832178_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069723724.1\|832178_832493_+	helix-turn-helix domain-containing protein	A0A2H4JE99	uncultured_Caudovirales_phage	1.8e-46	91.3
WP_145426947.1\|832516_832696_+	hypothetical protein	NA	NA	NA	NA
WP_145426950.1\|832688_832892_+	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	1.3e-18	64.1
WP_069723721.1\|832893_833148_+	hypothetical protein	NA	NA	NA	NA
WP_145426953.1\|833223_834123_+	mobile element-associated protein	A0A1W6JQL5	Staphylococcus_phage	4.8e-76	51.4
WP_069723719.1\|834123_835836_+	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	2.0e-131	45.9
WP_049420051.1\|836154_836430_+	hypothetical protein	H9A0M1	Staphylococcus_phage	8.9e-10	42.3
WP_145426956.1\|836547_837753_+\|portal	phage portal protein	A0A1L2BY94	Clostridium_phage	4.4e-61	35.4
WP_053026193.1\|837739_838309_+\|head,protease	HK97 family phage prohead protease	H9A114	Staphylococcus_phage	2.2e-18	35.3
WP_145426959.1\|838308_839544_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_145426962.1\|839613_839901_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_145426965.1\|839893_840628_+	HNH endonuclease	A0A1B0YEC6	Lactobacillus_phage	9.1e-17	42.5
WP_077700395.1\|840749_841082_+	hypothetical protein	A0A290GJQ7	Caldibacillus_phage	1.2e-11	41.1
WP_145426968.1\|841074_842718_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	2.1e-154	49.5
WP_049335102.1\|842730_843042_+\|head	phage head closure protein	NA	NA	NA	NA
WP_069723712.1\|843431_843650_+	hypothetical protein	A0A2H4JHD9	uncultured_Caudovirales_phage	7.8e-17	55.9
846373:846388	attR	NA	NA	NA	NA

DBSCAN-SWA_3

954693 : 990655

Staphylococcus_phage(92.59%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017176378.1\|954693_956088_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	9.1e-175	63.2
WP_017176377.1\|956088_957096_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.3e-97	52.7
WP_019835282.1\|957086_957332_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.3e-31	71.4
WP_017176375.1\|957399_957873_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	6.4e-48	57.1
WP_017176374.1\|957853_958633_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.5e-105	74.4
WP_017176373.1\|958674_960267_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.3e-264	83.4
WP_017176372.1\|960651_961848_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.3e-201	88.7
WP_017176371.1\|961946_962858_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	9.3e-104	77.9
WP_017176370.1\|962972_963809_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.3e-123	75.1
WP_017176369.1\|963866_964220_-	CrcB family protein	NA	NA	NA	NA
WP_017176368.1\|964216_964582_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.7e-32	60.2
WP_049379367.1\|964621_964930_-	hypothetical protein	NA	NA	NA	NA
WP_145424095.1\|965176_965890_+	transaldolase	M4QQQ7	Cyanophage	2.1e-18	35.5
WP_019835280.1\|966087_966552_+	membrane protein	A0A2H4PQT8	Staphylococcus_phage	8.6e-13	41.3
WP_049379365.1\|966526_966973_-	competence protein ComK	NA	NA	NA	NA
WP_037541109.1\|966959_967406_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	2.6e-27	50.3
WP_002449634.1\|967653_967878_+	hypothetical protein	NA	NA	NA	NA
WP_037541107.1\|968124_968973_+	autolysin	H9A0W8	Staphylococcus_phage	5.4e-37	40.3
WP_049379364.1\|969268_970756_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.2e-17	80.7
WP_049379363.1\|971163_972207_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.9e-133	66.5
WP_049379362.1\|972213_972846_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.7e-84	72.9
WP_145426974.1\|972857_974042_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.8e-176	76.1
WP_048761778.1\|974054_974513_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-59	86.7
WP_048761780.1\|974564_975566_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	6.0e-128	68.2
WP_017176356.1\|975774_976602_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	4.3e-07	23.5
WP_002449620.1\|976898_977300_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_048680716.1\|977360_977921_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.9e-71	71.4
WP_017176354.1\|977917_978877_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.5e-67	84.0
WP_049379360.1\|978988_980173_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	6.1e-180	81.9
WP_049434522.1\|980477_982892_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	88.3
WP_048761790.1\|982910_983222_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	9.7e-37	74.8
WP_145426977.1\|983467_990655_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	9.2e-13	30.1

DBSCAN-SWA_4

1230465 : 1240396

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017176274.1\|1230465_1231353_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	5.4e-40	33.1
WP_145423909.1\|1231378_1231882_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_145423906.1\|1231980_1232712_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.7e-10	25.8
WP_093514731.1\|1232698_1233238_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.3e-07	29.2
WP_017176278.1\|1233239_1233977_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_017176279.1\|1234183_1234909_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.1e-46	41.0
WP_070468439.1\|1234889_1236659_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	9.5e-20	27.0
WP_145423904.1\|1237096_1237642_+	ECF transporter S component	NA	NA	NA	NA
WP_002449743.1\|1237725_1237974_-	ferredoxin	A0A127AYY7	Bacillus_phage	5.8e-16	49.3
WP_017176281.1\|1238070_1239036_+	hypothetical protein	NA	NA	NA	NA
WP_017176282.1\|1239016_1240396_+	ATP-dependent DNA helicase RecQ	A0A2P1EM61	Moumouvirus	2.1e-54	33.9

DBSCAN-SWA_5

1624362 : 1638494

Prochlorococcus_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145427017.1\|1624362_1626081_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	7.3e-243	77.0
WP_093514945.1\|1626043_1627184_+\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	8.2e-73	99.3
WP_019835355.1\|1627256_1628495_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_017175765.1\|1628530_1630009_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.6e-66	46.7
WP_048762318.1\|1630024_1630591_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-28	41.4
WP_017175767.1\|1630593_1631622_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-64	43.6
WP_048762470.1\|1631614_1633099_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-47	32.6
WP_017175769.1\|1633077_1635267_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.0e-137	37.9
WP_017175770.1\|1635259_1635931_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_002448160.1\|1635932_1636193_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_019835351.1\|1636192_1636897_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	1.6e-47	43.8
WP_017175772.1\|1636900_1638025_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002448044.1\|1638011_1638494_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.6e-22	44.7

DBSCAN-SWA_6

1803395 : 1810323

Streptococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145427023.1\|1803395_1805084_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	9.4e-243	77.0
WP_002448228.1\|1805384_1805972_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.4e-52	54.7
WP_019834952.1\|1806288_1807233_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.2e-53	38.8
WP_019834951.1\|1807330_1808317_-	YvcK family protein	A1IMD5	Streptococcus_phage	5.3e-52	42.0
WP_017175914.1\|1808313_1809228_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.0e-09	35.3
WP_017175915.1\|1809381_1810323_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	5.5e-83	49.8

DBSCAN-SWA_7

1841510 : 1854651

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017175941.1\|1841510_1842281_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	4.4e-14	30.1
WP_002449066.1\|1842277_1843237_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	2.2e-10	72.0
WP_017175943.1\|1843226_1844195_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	6.5e-148	85.7
WP_002455627.1\|1844379_1845348_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.8e-175	93.5
WP_049415428.1\|1845461_1847567_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	92.3
WP_017175945.1\|1847529_1847928_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	5.0e-54	75.0
WP_002449096.1\|1848665_1849532_+	DMT family transporter	NA	NA	NA	NA
WP_002449091.1\|1849542_1850043_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.2e-51	70.8
WP_017175947.1\|1850343_1851849_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.1e-56	32.9
WP_017175948.1\|1851978_1852902_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_017175949.1\|1852964_1853501_-	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	2.6e-29	38.4
WP_017175950.1\|1853595_1854651_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	8.5e-24	24.7

DBSCAN-SWA_8

1867303 : 1873875

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049379638.1\|1867303_1868446_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	8.6e-22	39.6
WP_017175960.1\|1868429_1869023_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.7e-34	39.1
WP_017175961.1\|1869353_1870031_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.8e-65	55.6
WP_017175962.1\|1870027_1870447_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	29.9
WP_017175963.1\|1870446_1871163_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	5.5e-51	42.0
WP_017175964.1\|1871271_1871880_+	hypothetical protein	NA	NA	NA	NA
WP_048681259.1\|1871924_1872908_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	1.7e-63	43.0
WP_017175966.1\|1873035_1873875_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.2e-59	43.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP031279

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 37188

Staphylococcus_virus(39.53%)

integrase,holin,capsid,tail,portal,terminase,protease,head

attL 23387:23402|attR 27005:27020

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145427064.1\|206_1106_-	hypothetical protein	A0A060AKF4	Staphylococcus_phage	1.1e-19	35.7
WP_145427067.1\|1194_1341_+	DNA-binding protein	NA	NA	NA	NA
WP_145427069.1\|1611_1935_-	hypothetical protein	A0A1W6JQ83	Staphylococcus_phage	1.0e-36	72.0
WP_145427072.1\|2022_2910_-\|tail	phage tail protein	A0A2H4J9R4	uncultured_Caudovirales_phage	5.5e-93	86.0
WP_145427075.1\|2973_3384_-	hypothetical protein	A0A2H4J2L3	uncultured_Caudovirales_phage	1.1e-59	80.6
WP_145427078.1\|3383_3779_-	hypothetical protein	A0A2H4JA97	uncultured_Caudovirales_phage	3.5e-47	65.6
WP_145427080.1\|3775_4123_-\|head,tail	phage head-tail adapter protein	A0A1W6JQ73	Staphylococcus_phage	1.6e-35	63.2
WP_145427083.1\|4106_4394_-	hypothetical protein	A0A1W6JQ66	Staphylococcus_phage	1.6e-33	74.7
WP_145427086.1\|4586_5807_-\|capsid	phage major capsid protein	A0A2H4J1Z5	uncultured_Caudovirales_phage	5.5e-184	82.8
WP_145427209.1\|5824_6646_-\|protease	Clp protease ClpP	A0A1W6JQA0	Staphylococcus_phage	2.0e-60	52.3
WP_145427089.1\|6620_7787_-\|portal	phage portal protein	A0A2H4J9T2	uncultured_Caudovirales_phage	1.1e-160	74.1
WP_145427091.1\|7806_9459_-\|terminase	terminase large subunit	A0A2H4JA99	uncultured_Caudovirales_phage	2.1e-303	90.5
WP_107370305.1\|9455_9806_-	hypothetical protein	A0A2H4JA84	uncultured_Caudovirales_phage	9.8e-54	92.2
WP_145427093.1\|9947_10265_-	HNH endonuclease	A0A2H4J213	uncultured_Caudovirales_phage	7.3e-48	85.1
WP_145427096.1\|10460_10859_-	hypothetical protein	U3PBR8	Staphylococcus_phage	3.0e-59	85.5
WP_145427099.1\|11133_11322_-	hypothetical protein	NA	NA	NA	NA
WP_145427102.1\|11589_11889_-	hypothetical protein	A0A2H4JDU9	uncultured_Caudovirales_phage	4.3e-34	69.7
WP_145427104.1\|11960_12275_+	DUF4870 domain-containing protein	A0A2H4J741	uncultured_Caudovirales_phage	5.8e-13	45.5
WP_145427107.1\|12305_12659_-	nuclease	Q4ZC06	Staphylococcus_virus	2.4e-52	83.8
WP_145427212.1\|12645_12864_-	hypothetical protein	Q4ZC08	Staphylococcus_virus	1.9e-18	65.2
WP_145427110.1\|12974_13373_-	hypothetical protein	Q4ZC09	Staphylococcus_virus	2.1e-23	48.2
WP_145427113.1\|13359_13557_-	hypothetical protein	B7T0H2	Staphylococcus_virus	1.6e-08	50.8
WP_145427116.1\|13816_13996_-	hypothetical protein	Q4ZC10	Staphylococcus_virus	1.6e-20	79.7
WP_145427119.1\|14006_14219_-	DUF3269 family protein	Q4ZC11	Staphylococcus_virus	1.0e-29	85.7
WP_145427122.1\|14218_14455_-	hypothetical protein	NA	NA	NA	NA
WP_145427215.1\|14456_14681_-	DUF3310 domain-containing protein	Q4ZC12	Staphylococcus_virus	4.2e-34	94.6
WP_145427125.1\|14754_14940_-	hypothetical protein	Q4ZC13	Staphylococcus_virus	2.3e-17	70.3
WP_145427129.1\|14939_15176_-	hypothetical protein	NA	NA	NA	NA
WP_145427132.1\|15191_15518_-	hypothetical protein	NA	NA	NA	NA
WP_145427218.1\|15519_15891_-	RusA family crossover junction endodeoxyribonuclease	A0A1J0MFP7	Staphylococcus_phage	1.2e-49	77.2
WP_145427135.1\|16899_17661_-	replication protein	A0A1W6JNI1	Staphylococcus_phage	3.3e-102	76.1
WP_145427137.1\|17657_18326_-	hypothetical protein	Q4ZC21	Staphylococcus_virus	1.6e-121	92.8
WP_145427140.1\|18340_18739_-	single-stranded DNA-binding protein	Q4ZC22	Staphylococcus_virus	4.1e-64	94.7
WP_145427143.1\|18738_19362_-	single-stranded DNA-binding protein	Q4ZC23	Staphylococcus_virus	6.0e-102	91.8
WP_145427146.1\|19358_19577_-	DUF2483 family protein	Q4ZC24	Staphylococcus_virus	1.8e-29	83.3
WP_145427149.1\|19573_19840_-	DUF1108 family protein	Q4ZDY8	Staphylococcus_virus	2.7e-11	39.3
WP_145427152.1\|20085_20298_-	hypothetical protein	A0A1J0MG48	Staphylococcus_phage	9.9e-17	64.2
WP_145427155.1\|20442_20913_+	hypothetical protein	NA	NA	NA	NA
WP_145427159.1\|20875_21109_-	hypothetical protein	NA	NA	NA	NA
WP_145427162.1\|21121_21871_-	oxidoreductase	B7T097	Staphylococcus_virus	8.7e-124	89.9
WP_145427165.1\|21886_22126_-	helix-turn-helix domain-containing protein	A0A2H4J3I3	uncultured_Caudovirales_phage	3.3e-37	100.0
WP_145427167.1\|22315_22990_+	helix-turn-helix domain-containing protein	A0A1W6JPS3	Staphylococcus_phage	6.0e-124	97.8
WP_145427170.1\|23201_23669_+	hypothetical protein	NA	NA	NA	NA
23387:23402	attL	NA	NA	NA	NA
WP_145427173.1\|24193_24910_+	type II toxin-antitoxin system PemK/MazF family toxin	H9A0K1	Staphylococcus_phage	4.0e-78	78.5
WP_145427176.1\|25105_26155_+\|integrase	tyrosine-type recombinase/integrase	A0A1J0MF14	Staphylococcus_phage	3.1e-188	92.6
WP_145427180.1\|27332_27878_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
27005:27020	attR	NA	NA	NA	NA
WP_145427183.1\|27898_28141_+	DUF2273 domain-containing protein	NA	NA	NA	NA
WP_145427186.1\|28188_28683_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_145427188.1\|29119_30568_-	CHAP domain-containing protein	Q4ZC44	Staphylococcus_virus	1.8e-282	94.8
WP_145427191.1\|30548_30983_-\|holin	phage holin	Q4ZC45	Staphylococcus_virus	5.1e-68	91.0
WP_145427193.1\|31139_31247_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_145427196.1\|31470_31764_-	DUF2951 family protein	Q4ZC51	Staphylococcus_virus	7.0e-29	72.2
WP_145427199.1\|31785_32088_-	hypothetical protein	A0A1J0MFP4	Staphylococcus_phage	6.8e-35	82.8
WP_145427202.1\|32258_35696_-	hypothetical protein	A0A1J0MG20	Staphylococcus_phage	0.0e+00	55.6
WP_145427205.1\|35697_37188_-\|tail	phage tail protein	A0A1J0MFV2	Staphylococcus_phage	3.3e-207	68.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031277

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP031279

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection