CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	1 crisprs	cas14j,csa3,RT	1	1	7	1
NZ_CP031280	Staphylococcus pasteuri strain 3C chromosome, complete genome	1 crisprs	WYL,csa3,DEDDh,cas3,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031281_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031281_1

82477-82698

Orphan

Consensus_repeat	Method
AAAGGCATAGTTTTGCCACATTAAAGGCATAGTTTTTTTATTGTTATGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031281_1

>merge|NZ_CP031281|1|82477-82698|CRISPRCasFinder
AAGGGAGTAGTTTTGCCACATAAAAGGAGTAGTTTTGCCACATTAAAGGCATAGTTTTGCCACATTAAAGGCATAGTTTTGCCACATTAAAGGCATAGTTTTTTTATTGTTATGCCTATATTTCTATGTTACTGTATAAACAAGCTTTAATACATAATATTATAGAATTTAAAAGGCATAGTTTTGCCACATTAAAGGCATAGTTTTTTTGTTGTTATGCCT

>NZ_CP031281|1|1|82477-82698|CRISPRCasFinder
AAGGGAGTAGTTTTGCCACATAAAAGGAGTAGTTTTGCCACATTAAAGGCA	TAGTTTTGCCACATTAAAGGCATAGTTTTGCCACATTAAAGGCATAGTTTTTTTATTGTTATGCCTATATTTCTATGTTACTGTATAAACAAGCTTTAATACATAATATTATAGAATTTA
AAAGGCATAGTTTTGCCACATTAAAGGCATAGTTTTTTTGTTGTTATGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031281.1\|WP_002477833.1\|85637_87017_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP031281.1\|WP_017636241.1\|78737_78986_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031281.1\|WP_037555709.1\|88640_89117_+\|mobilization-protein	unknown	unknown	gnl\|CDD\|135898
NZ_CP031281.1\|WP_154874846.1\|87631_87820_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031281.1\|WP_154874845.1\|89904_90768_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|227814
NZ_CP031281.1\|WP_017636236.1\|82720_83584_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|227814
NZ_CP031281.1\|WP_154874864.1\|87266_87647_+\|MobC-family-plasmid-mobilization-relaxosome-protein	unknown	unknown	gnl\|CDD\|368576
NZ_CP031281.1\|WP_017636247.1\|73016_73976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223202
NZ_CP031281.1\|WP_154874847.1\|84481_85489_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP031281.1\|WP_029056311.1\|83765_83900_-\|putative-holin-like-toxin	unknown	unknown	unknown
NZ_CP031281.1\|WP_154874849.1\|80860_81205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031281.1\|WP_154874844.1\|91103_92108_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP031281.1\|WP_017636245.1\|74424_74802_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031281.1\|WP_017636244.1\|75673_76033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031281.1\|WP_017636242.1\|78114_78360_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274230
NZ_CP031281.1\|WP_154874848.1\|81778_82261_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369151
NZ_CP031281.1\|WP_017636246.1\|73977_74418_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_CP031281.1\|WP_017636239.1\|80050_80467_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031281.1\|WP_154874843.1\|92111_92777_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379199
NZ_CP031281.1\|WP_017636240.1\|79072_79879_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113

Protein	Function_ID	Function_description	E-value
NZ_CP031281.1\|WP_037555709.1\|88640_89117_+\|mobilization-protein	gnl\|CDD\|135898	PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.	0.00895768
NZ_CP031281.1\|WP_154874845.1\|89904_90768_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|227814	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair].	6.15735e-86
NZ_CP031281.1\|WP_017636236.1\|82720_83584_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|227814	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair].	6.96145e-85
NZ_CP031281.1\|WP_002477833.1\|85637_87017_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.8888e-50
NZ_CP031281.1\|WP_154874847.1\|84481_85489_+\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP031281.1\|WP_154874844.1\|91103_92108_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	1.65818e-168
NZ_CP031281.1\|WP_154874848.1\|81778_82261_-\|hypothetical-protein	gnl\|CDD\|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	1.7048e-07
NZ_CP031281.1\|WP_017636240.1\|79072_79879_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.47564e-32
NZ_CP031281.1\|WP_017636242.1\|78114_78360_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|274230	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids. [Mobile and extrachromosomal element functions, Other].	1.15345e-10
NZ_CP031281.1\|WP_017636246.1\|73977_74418_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	2.62906e-16
NZ_CP031281.1\|WP_017636247.1\|73016_73976_-\|hypothetical-protein	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0.000796574
NZ_CP031281.1\|WP_154874843.1\|92111_92777_-\|SDR-family-oxidoreductase	gnl\|CDD\|379199	pfam13460, NAD_binding_10, NAD(P)H-binding.	1.94485e-44
NZ_CP031281.1\|WP_154874864.1\|87266_87647_+\|MobC-family-plasmid-mobilization-relaxosome-protein	gnl\|CDD\|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	7.50158e-05

>NZ_CP031281.1|WP_154874848.1|81778_82261_-|hypothetical-protein
MLINLCKLQILYNFLLFDPQYKGLHVKSKVMYTLIIDTMMYRMNKGTIEIDKNGNQYIEFETEYFKKLLNISVNAVNKFKKELIKVGLIDVLQKQKNNVFTSTCQKSKTKNFIIIIKRRNPTNTHISNYLNSYLKRHINQYLSIKNSRTTGRFVDNHGVV
>NZ_CP031281.1|WP_154874849.1|80860_81205_-|hypothetical-protein
MSVICGAKNKYNQLYETNYRLEDLENEIGEALIRVNRKHKKDNKKMTEVCNYLVASIKGPFTQRHEEDYNRGVIAKSPKIALFGDLPNIITPSSQLMNSNIRKQITCRQSICNG
>NZ_CP031281.1|WP_017636239.1|80050_80467_+|hypothetical-protein
MATSPKEVRQKLESNIYIYKVTSKNIYYTIDVSILSQYRKEKYMEGRVQKWNSQQINITDDISTTLEKELNEDASAFKTQKEPSEITIYSKILSQGEHIIEELRKIKIEINKLELNEEKNQGIIDLTKKEIIKSVNKI
>NZ_CP031281.1|WP_017636240.1|79072_79879_-|ParA-family-protein
MEIITFAAVKGGVGKTTLSYNFSGYLADLGYKVLMIDLDHQCNLSQILGIYDQKNTVLSIFEKIDTLHIEEKVKIHRINDNIDLISGFLRLDEYEKHMSTTDGKDMQLYMWLDDYYEEYNIGQYDYIIIDTHPDFSTSTRNAIVVSHKVISPNKPSGFSDDSNANISYRINKLKKDLIDFRTRESYVTAKLFFVGNMVKHNTKSSINFKKSIENQKDYITYFPDKELITRSVLEKKPIVSFKQEPAIYLKEKSFFQQFIKSCKAIKDA
>NZ_CP031281.1|WP_017636241.1|78737_78986_-|hypothetical-protein
MAFNKKIDSNDQENSIEKALENAVSPNTSYKKIEIKKDKIKEKKKRYQFMLQPSVRKKLDELVEENNYSSSSEFLNEVIKQL
>NZ_CP031281.1|WP_017636242.1|78114_78360_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MTVIHTRKLRKSGNSNILTIPKEVIKALDVVEGQFIAFNVVNGRVVLEAVKTTDDNARDILSISNQISKQYDSAFKDLVNR
>NZ_CP031281.1|WP_017636244.1|75673_76033_-|hypothetical-protein
MREQLKKFKNQDVVLTAKVKTVKYRRYVDRFSKYKKNVHILLKNAKINGEVIDHVWLQERNKFYEEYKPLTGQTVKFKVKIKPYIKKKDFVYVEDYGIQRLSKIMSKEVYDEQKPFKKK
>NZ_CP031281.1|WP_017636245.1|74424_74802_-|hypothetical-protein
MANTKTIKKIKMAKMKSENLNEFLLNFVHWEKIAKRLNYSKPSVFRIKKQLREHIDEEGEQEALYRMFTVSELNKLIDLYNDYIKHPEAYAKPKTKKELNIERQEKAIAKHMNDMKMDYKPTDRE
>NZ_CP031281.1|WP_017636246.1|73977_74418_-|RusA-family-crossover-junction-endodeoxyribonuclease
MAKEWSYIIDIPPVATPRPNFRSVKGADGKVKNITYYPEKYNQYMRDVQEMLKRDNALNKDFYDVMACPYGVKAEIKFFVQAPKGYKGVNNIMRTTAPDIDNLEKAAFDSIFKGLEIKDSRIAMVAKAKFQELHRPRTEITLKGIE
>NZ_CP031281.1|WP_017636247.1|73016_73976_-|hypothetical-protein
MPSTNLEKFYAIEKIMEEFNSLQENYLKSLEERYEYMNEYRREYRSLVRAVNEVEKRLKTTENDDEEIEVLKKNARINAQRQIDSIEEQRESNPYYDPKDSVKSLNKLINALYRSVDISYLESVQKSLEKNNIDVDGLPLLIDVLESYEEQDNREQKQKILSLIDMAKNDYLGSFKEYRNALETGEVGESFKDIFKVLAQLGYDEEAGLMADALPDYDDVRRERPDPQQLLEVLPPVKSADLQYWQSNRRKSEGYALNMLFAKEVAYTRRALLEDREYIGTRNAFKRLNNAYDELSAYMYERYHELGGTPYNYHGHMNR
>NZ_CP031281.1|WP_017636236.1|82720_83584_+|RepB-family-plasmid-replication-initiator-protein
MSGETVIYKNEMNLVPLRRFTATEINLFFAMCNKLKEQDTNTLHLSFDELKELSNYSPETRNINRFVDDLQRVYDKMLDIRYTIRTETKIKKFVLFYKYEIDISEKYLEIATSPDLKYILNSITNNFTKFELKEMTHLKSTYSKNMFRLLKQYKHTGYMKIKIEDFRERLDIPESYRMSNINQFVLTPIIKELSPIFNNLNINKIKAKKGRKIEWLEFTFDSEKRIHSKRQPQMADIGKSRQYISREKTPKWLKERTYEKQTQNEYDPQLEKEREAFLKQLEVDWEE
>NZ_CP031281.1|WP_029056311.1|83765_83900_-|putative-holin-like-toxin
MMVSIKSLERRRLLVDISTMLQFGIFLIAFIGLIVELIKLSQKK
>NZ_CP031281.1|WP_154874847.1|84481_85489_+|tryptophan--tRNA-ligase
MKKENLLTGDRPTGKLHIGHYIGSLKKRVKIQDQFNNFIMIADQQALTDNAKNPKKIQNSLIEVILDYLSVGIDPIKSNIFVQSQIPELSELTMHYLNLVSISRLKRNPTVKNEMKEKNFGDSVPTGFFIYPVSQAADITAFKASIVPVGEDQIPMIEQTNEIVKTFNNTYKQNVLKRAKALLPEKGMGRLRGIDGKAKMSKSLNNAIYLSDSPDIIRQKVMSMYTDPNHIRVTDPGRIEDNTVFTYLDAFCKDKKYLAEMKEHYKAGGLGDVKVKKYLNEIIQAELEPIRNRRSQYQNNLDYIYEILKDGSNQARLIASQTLHEVRDAMGINYF
>NZ_CP031281.1|WP_002477833.1|85637_87017_+|MFS-transporter
MNSSKYFDHLVVFTAGIGMFLSTLDSGIINVALPTLSKSFNVDTSFITWSVTLYTLLLTGTIIIFGRLSDKYNRLNIYSFGLTIFLIASILCGFSNNIMQLIMFRGLQGIGAAMLQGTATAIITTTIPKNRQGPALGTLSILLGIGPVLGPSIGGLLISVGNWRWIFWINIPFIFIGLIGCMILKKYIKEQKSTSIHLDIRGNSLLFLSIFCLLISLTSWSYHSIFNISVYGNFLIFIVSFCLFIIWELKTNHPIIDLRLFKNVSFSSPIFAIFVFGGTTSLGFIIPPYILEKINHLSSWQIGLVNLTSPLGLVLTSKISGKLISRIGNIVLMTTGLIIMIVAYTSLGLLQYILNPVTISLLLLIYGIGGGFFLPSNTSAIMGTVSQDMQGTAGATQRMVQNIGIAFYTAVTSLFISNSSNSDKLIEGSSHAWLFASITLFLALLPFLLKILKTKYEPN
>NZ_CP031281.1|WP_154874864.1|87266_87647_+|MobC-family-plasmid-mobilization-relaxosome-protein
MSEQNHFVASYETVGQNHKPNRKEPKQISFRVSESEYLKLKKSAETLNIIVPSFVKKKAQGSRLVAPKFDKETRQSIAKDLSKLGANANQIAKYCNQHQYDAPNYEALEHNINELRERLNDIWARI
>NZ_CP031281.1|WP_154874846.1|87631_87820_+|hypothetical-protein
MGKNLEIVTSLFVLILAIGFSIWNFYNHSYTTAIIMLVIGIINIGYLIQEIKEKRRDDDGNN
>NZ_CP031281.1|WP_037555709.1|88640_89117_+|mobilization-protein
MSAVRHYVQRIDTDNLKQDFEQAIQKELNDVKTETQNMVKEMKSNQADLQKANSEYKKTIDERIKNNETAVKQYDQAFNRLTRGITAMFFIFALTMVAFLVLNSLDDLLGVHHFYEWINYVLKTGHSAWRYFILLLYLVPYLLFGLLIYTILRAYKSI
>NZ_CP031281.1|WP_154874845.1|89904_90768_+|RepB-family-plasmid-replication-initiator-protein
MSGETVVYKNDLNLVPLRKFTSIEINLFFAMCNKLKEQDTYTLHLPFDELKELSNYNPKTRNINRFVKDLDDVYKKMLELTIKYEDDEIIERFVLFNHYRIHKKEQYLEISTSPNLKHILNSITNNFTKFELEEMTTLKSTYSKNMFRILKQFKHTGYLKIKINDFRERLDIPTSYRMTDINKNVLKPIINELSYIFKALKIHKVRAKKGRKIEYLEFIFEPENRIYNKKYSESKNTVSSRRYISREKTPQWLEDRTYTKKVRSDIDPQFEKEREAFLKQLQIDWDE
>NZ_CP031281.1|WP_154874844.1|91103_92108_-|NADP-dependent-oxidoreductase
MNNQQIVLAKRPQSIPQDDVFRFETIETREPYAGEVQVESIYVSVDPYMRGRMNDTKSYVQPFQVNEPLQGHIVGKVTQSNDERLSVGDYVTGILPWKKINTVNGDDVTPVPSKDVPLHLYLSVLGMPGMTAYTGLLQIGQPQSGETVVVSAASGAVGSVVGQIAKIKGAKVVGIAGGKQKTTYLTDELGFDAAIDYKQDDFAQQLEAAVPDGIDVYFENVGGVISDEVFKHLNRFARVPVCGAISAYNNEKDDIGPRIQGTLIKNQALMQGFVVAQFADHFKEASEQLAQWVSEDKIKFEVTIDEGFDNLPSAFRKLFTGDNFGKQVVKIKEE
>NZ_CP031281.1|WP_154874843.1|92111_92777_-|SDR-family-oxidoreductase
MKSLIIGANGGVGQHLIRKLKARDVDFTAGIRKEEQVEVLKADGIDATYIDVAKQSIDELTELFKPYDQILFSVGSGGSTGDDQTIIVDLDGAVKAIKASEHVGRQHFVMVSTYDSCREAFDASGDLKPYTIAKHYADDYLRHANLKYTIVHPGALTNEHETQQFNMSKQFENVQNPSITREDVAEVLVSVLTDEALQGHEFQIINGNLSLSDATNKYLEE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP031281_1	1.1\|82528\|120\|NZ_CP031281\|CRISPRCasFinder	82528-82647	120	NZ_CP031281.1	62703-62822	60	0.5

1. spacer 1.1|82528|120|NZ_CP031281|CRISPRCasFinder matches to position: 62703-62822, mismatch: 60, identity: 0.5

tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	CRISPR spacer
tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031281_1	1.1\|82528\|120\|NZ_CP031281\|CRISPRCasFinder	82528-82647	120	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	62703-62822	60	0.5
NZ_CP031281_1	1.1\|82528\|120\|NZ_CP031281\|CRISPRCasFinder	82528-82647	120	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	82528-82647	60	0.5

1. spacer 1.1|82528|120|NZ_CP031281|CRISPRCasFinder matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 60, identity: 0.5

tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	CRISPR spacer
tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	Protospacer
************************************************************

2. spacer 1.1|82528|120|NZ_CP031281|CRISPRCasFinder matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 60, identity: 0.5

tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	CRISPR spacer
tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4383

Lactobacillus_virus(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002467540.1\|2083_2515_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_154874808.1\|2721_3864_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	C1KFJ5	Lactobacillus_virus	3.1e-96	50.9
WP_029056274.1\|3960_4383_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	7.5e-48	64.3

DBSCAN-SWA_2

14379 : 26236

Streptococcus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017636323.1\|14379_14727_+	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	7.1e-12	34.0
WP_000493114.1\|14893_14989_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_154874819.1\|15138_16911_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_154874822.1\|17033_17642_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.5e-12	30.1
WP_154874824.1\|18021_20838_-	class I SAM-dependent DNA methyltransferase	Q6NE04	Leptospira_phage	5.0e-140	34.9
WP_154874826.1\|21947_22172_+	hypothetical protein	NA	NA	NA	NA
WP_017636329.1\|22934_24089_+	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	2.8e-12	21.7
WP_123186460.1\|24220_26236_-	ATP-binding cassette domain-containing protein	A0A1B1IVR3	uncultured_Mediterranean_phage	3.5e-103	35.2

DBSCAN-SWA_3

39681 : 43382

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029056299.1\|39681_39996_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	5.0e-33	64.4
WP_029056300.1\|39995_41285_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	2.2e-183	80.0
WP_154874831.1\|42059_43382_-	dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	3.4e-115	50.2

DBSCAN-SWA_4

48304 : 49294

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154874839.1\|48304_49294_-	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.2e-24	28.1

DBSCAN-SWA_5

54581 : 67235

Staphylococcus_phage(50.0%)

tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154874845.1\|54581_55445_-	RepB family plasmid replication initiator protein	A0A0N7GFI2	Staphylococcus_phage	5.5e-05	60.5
WP_037555709.1\|56232_56709_-	mobilization protein	NA	NA	NA	NA
WP_154874846.1\|57529_57718_-	hypothetical protein	NA	NA	NA	NA
WP_154874864.1\|57702_58083_-	MobC family plasmid mobilization relaxosome protein	NA	NA	NA	NA
WP_002477833.1\|58332_59712_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	1.7e-16	29.3
WP_154874847.1\|59860_60868_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_029056311.1\|61449_61584_+\|holin	putative holin-like toxin	Q4ZCZ4	Staphylococcus_virus	5.3e-08	68.2
WP_017636236.1\|61765_62629_-	RepB family plasmid replication initiator protein	A0A0N7GFI2	Staphylococcus_phage	4.2e-05	65.1
WP_154874848.1\|63088_63571_+	hypothetical protein	NA	NA	NA	NA
WP_154874849.1\|64144_64489_+	hypothetical protein	NA	NA	NA	NA
WP_017636239.1\|64882_65299_-	hypothetical protein	NA	NA	NA	NA
WP_017636240.1\|65470_66277_+	ParA family protein	E2ELL2	Clostridium_phage	5.1e-13	27.7
WP_017636241.1\|66363_66612_+	hypothetical protein	NA	NA	NA	NA
WP_017636242.1\|66989_67235_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0N9RRQ9	Staphylococcus_phage	1.2e-05	34.6

DBSCAN-SWA_6

78114 : 90768

Staphylococcus_phage(50.0%)

holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017636242.1\|78114_78360_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0N9RRQ9	Staphylococcus_phage	1.2e-05	34.6
WP_017636241.1\|78737_78986_-	hypothetical protein	NA	NA	NA	NA
WP_017636240.1\|79072_79879_-	ParA family protein	E2ELL2	Clostridium_phage	5.1e-13	27.7
WP_017636239.1\|80050_80467_+	hypothetical protein	NA	NA	NA	NA
WP_154874849.1\|80860_81205_-	hypothetical protein	NA	NA	NA	NA
WP_154874848.1\|81778_82261_-	hypothetical protein	NA	NA	NA	NA
WP_017636236.1\|82720_83584_+	RepB family plasmid replication initiator protein	A0A0N7GFI2	Staphylococcus_phage	4.2e-05	65.1
WP_029056311.1\|83765_83900_-\|holin	putative holin-like toxin	Q4ZCZ4	Staphylococcus_virus	5.3e-08	68.2
WP_154874847.1\|84481_85489_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_002477833.1\|85637_87017_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	1.7e-16	29.3
WP_154874864.1\|87266_87647_+	MobC family plasmid mobilization relaxosome protein	NA	NA	NA	NA
WP_154874846.1\|87631_87820_+	hypothetical protein	NA	NA	NA	NA
WP_037555709.1\|88640_89117_+	mobilization protein	NA	NA	NA	NA
WP_154874845.1\|89904_90768_+	RepB family plasmid replication initiator protein	A0A0N7GFI2	Staphylococcus_phage	5.5e-05	60.5

DBSCAN-SWA_7

95500 : 97519

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017636296.1\|95500_95818_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	4.8e-31	63.5
WP_154874850.1\|95817_97107_+	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	4.4e-184	80.0
WP_154874865.1\|97123_97519_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	1.1e-58	80.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP031281.1|WP_017636241.1|66363_66612_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP031281.1|WP_017636241.1|66363_66612_+|hypothetical-protein

66363_66612_+

82 aa aa

54581-67235

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP031281_1	Orphan	1.1\|82528\|120\|NZ_CP031281\|CRISPRCasFinder	82528-82647	120	62822-62703	60

1. spacer 1.1|82528|120|NZ_CP031281|CRISPRCasFinder matches to NZ_CP031281 position: 62822-62703, mismatch: 60

tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	CRISPR spacer
tagttttgccacattaaaggcatagttttgccacattaaaggcatagtttttttattgtt	Protospacer
************************************************************

2. NZ_CP031280

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031280_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031280_1

918342-918441

Orphan

Consensus_repeat	Method
CTAATGCATAAGAAAAACTAAGGTACTAAAGTACCA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP031280_1

>merge|NZ_CP031280|1|918342-918441|CRISPRCasFinder
CTAATGCATAAGAAAAACTAAGGTACTAAAGTACCAGGAAAGCTAAGGAACGCCTTAGCTAAAGCTAATGCATAAGAAAAACTAAGGTACTAAAGTACCA

>NZ_CP031280|1|1|918342-918441|CRISPRCasFinder
CTAATGCATAAGAAAAACTAAGGTACTAAAGTACCA	GGAAAGCTAAGGAACGCCTTAGCTAAAG
CTAATGCATAAGAAAAACTAAGGTACTAAAGTACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031280.1\|WP_002452273.1\|914872_915175_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP031280.1\|WP_154874260.1\|912910_914449_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP031280.1\|WP_017637869.1\|915176_916634_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP031280.1\|WP_124760405.1\|907437_909630_+\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP031280.1\|WP_017637857.1\|928023_928779_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP031280.1\|WP_017637865.1\|921077_921620_+\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP031280.1\|WP_017637864.1\|921760_922831_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP031280.1\|WP_119622529.1\|906748_907441_+\|heptaprenylglyceryl-phosphate-synthase	unknown	unknown	gnl\|CDD\|235237
NZ_CP031280.1\|WP_046467430.1\|918521_919493_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982
NZ_CP031280.1\|WP_126567677.1\|925760_926486_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP031280.1\|WP_017637866.1\|919571_920933_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP031280.1\|WP_126568098.1\|904863_906159_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
NZ_CP031280.1\|WP_017637871.1\|911649_912852_+\|pheromone-cAM373-lipoprotein-CamS	unknown	unknown	gnl\|CDD\|227188
NZ_CP031280.1\|WP_108000097.1\|909633_911640_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP031280.1\|WP_017637863.1\|922862_923414_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP031280.1\|WP_029056008.1\|926871_927858_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP031280.1\|WP_154874258.1\|906264_906567_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226893
NZ_CP031280.1\|WP_154874262.1\|916646_918074_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP031280.1\|WP_017637860.1\|924447_925761_+\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP031280.1\|WP_154874264.1\|923752_924253_-\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|153113

Protein	Function_ID	Function_description	E-value
NZ_CP031280.1\|WP_002452273.1\|914872_915175_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	9.98839e-34
NZ_CP031280.1\|WP_154874260.1\|912910_914449_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP031280.1\|WP_017637869.1\|915176_916634_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP031280.1\|WP_124760405.1\|907437_909630_+\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP031280.1\|WP_017637857.1\|928023_928779_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	4.8791e-125
NZ_CP031280.1\|WP_017637865.1\|921077_921620_+\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	7.41804e-12
NZ_CP031280.1\|WP_017637864.1\|921760_922831_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP031280.1\|WP_119622529.1\|906748_907441_+\|heptaprenylglyceryl-phosphate-synthase	gnl\|CDD\|235237	PRK04169, PRK04169, heptaprenylglyceryl phosphate synthase.	4.24928e-100
NZ_CP031280.1\|WP_046467430.1\|918521_919493_+\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
NZ_CP031280.1\|WP_126567677.1\|925760_926486_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	6.49701e-111
NZ_CP031280.1\|WP_017637866.1\|919571_920933_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
NZ_CP031280.1\|WP_126568098.1\|904863_906159_+\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
NZ_CP031280.1\|WP_017637871.1\|911649_912852_+\|pheromone-cAM373-lipoprotein-CamS	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	1.44535e-163
NZ_CP031280.1\|WP_108000097.1\|909633_911640_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP031280.1\|WP_017637863.1\|922862_923414_-\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	1.13586e-71
NZ_CP031280.1\|WP_029056008.1\|926871_927858_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	5.37502e-58
NZ_CP031280.1\|WP_154874258.1\|906264_906567_+\|hypothetical-protein	gnl\|CDD\|226893	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown].	4.9691e-56
NZ_CP031280.1\|WP_154874262.1\|916646_918074_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP031280.1\|WP_017637860.1\|924447_925761_+\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.09511e-90
NZ_CP031280.1\|WP_154874264.1\|923752_924253_-\|H-type-ferritin-FtnA	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	4.92914e-73

>NZ_CP031280.1|WP_154874262.1|916646_918074_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNRRAVDWAMRASMALNMDIATNSKFDRKNYFYPDNPKAYQISQFDEPIGENGYIDIEVDGKTKRIGITRLHMEEDAGKSTHKDGYSLVDLNRQGTPLIEIVSEPDIRSPQEAYAYLEKLRSIIQYTGVSDCKMEEGSLRCDANISLRPYGQEEFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYVDDEWKERVRQTIPELPDERKAKYVNDLGLPEYDAHVLTLTKEMSDFFEGAIEYGADVKLTSNWLMGGVNEYLNKNQVDLLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAENGGDAKQIMEDKGLVQISDEATLLKFVNEALDNNPQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQKVNQLLKQELDKR
>NZ_CP031280.1|WP_017637869.1|915176_916634_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSIRYESVENLLTLIKNKEIKPSQIVSDIYDAIEETDPTIKSFLALDKENAMKKAQELDELQEKDQMEGKLFGIPMGIKDNIITKDLETTCASKMLEGFVPIYESTVMNKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHSAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPASYCGIVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNALVLEAISGIDANDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVSEDVKKSVKNAVETLKSLGAEVEEVSLPNTKYGIPSYYVIASSEASANLARFDGIRYGYHSKEAQSLEELYKMSRSEGFGDEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFDLGDEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQFNLHDAYEKL
>NZ_CP031280.1|WP_002452273.1|914872_915175_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MTKVTREEVEHIANLARLQISPEETDEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIEGIPQELALKNAKETENGQFKVPAIMNEEDA
>NZ_CP031280.1|WP_154874260.1|912910_914449_-|sodium/proline-symporter-PutP
MLYLGTVLNQQVNANWQTYIMIAIYFIILLIIGFYGYKQATGNLSEFMLGGRSIGPYITALSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYWVVAPRLRVYTEIAGDAITLPDFFKNRLNDQQNIIKIISGLIIVIFFTLYTHSGFVSGGKLFESAFGLNYHYGLILVAIIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMQLNGLDTFSRVAEMKPTNMDIFKGTTVIGIISLFSWGLGYFGQPHIIVRFMSIKSHKLLPKARRLGISWMAIGLLGAVGVGLTGIAFISERNIKMEDPETLFIIMSQILFHPLVGGFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLIRGEEKAATHQKVFVMVGRLSVLIVAIIAIVIAWYPNDTILNLVGNAWAGFGASFSPLVLFSLYWKDLTRAGAISGMISGALVVIIWIAWIKPLASINELLGMYEIIPGFIVSVIVTYVVSKLTAKPGDFVNNDLAKVKQLVKEK
>NZ_CP031280.1|WP_017637871.1|911649_912852_+|pheromone-cAM373-lipoprotein-CamS
MKRTIILLISTIFILTACSNDKDKKSDQDTNQSKDSHSSQVKQVATDKNVQGDDYRTILPFKESQSRGLLQDNMANSYNSEGFESGLLELSKEVFPTDKYLYQDGQFLDKKTINAYLDPKYTKKEIDNMSEKEKKKKKANENLGLNPSHQGETDPTKIAEKSPAYLSNILEQDFYGNSDSKGKNIKGMTIGLAMNSKYYYQKEKDGETYSKKLDDKEIEKQGKAMASEMLSRLRENSDLKDIPIHFAIYKQSSQESITPGEFIAGATADDGQTKINDWKSINEKTALLPSSTAADYDESLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKAKQLTVDLPIDYYGQAETIGITQYVTEQAKKYFDNIDEYEIRIKDGNNPRALISKNKDDKEPEVHIYHN
>NZ_CP031280.1|WP_108000097.1|909633_911640_+|NAD-dependent-DNA-ligase-LigA
MNDMQNRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIEEEHPEYKTSDSPTVRVGGEAQSTFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDNIGKVEYMCELKIDGLAVSLKYQNGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLNFEVRGEAYMPRQSFMNLNEEKENNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSINDFTDFEATTQSGALDELDQLGFKTNHERERVSDIEGVLKYIEKWTAQREDLSYDIDGIVIKVNDLEQQDEMGFTQKSPRWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDLIHERDIRIGDSVVIKKAGDIIPEVVKSILDRRPDDAKTYHMPTHCPSCNHELVRIEGEVALRCINPKCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENNLIKDVADIFYLTEDDLLPLDRMGSKKVENLLEAIHKAKSQSLEHLLFGLGIRHLGVKASRVLAEKYETMDRLIEVTEEELVGIHDIGDKLAQSVVTYLDNEDIRALIQKLKDKNVNMTYKGVKTTEIEGHPEFSGKTIVLTGKLEQMTRNEASQWLQMQGAKVTNSVTKSTDLLIAGADAGSKLTKAEKFGTEIWTEDEFATKQKEINNE
>NZ_CP031280.1|WP_124760405.1|907437_909630_+|DNA-helicase-PcrA
MNSLVKNMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEQLVGEEAQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNLKNELKTPEDAQNEANDYHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPEALEYYQNKFQYIHVDEYQDTNKAQYTLIKLLANKFKNLCVVGDSDQSIYGWRGADIQNILSFEEDYPNAKTIFLEQNYRSTKTILNAANEVIKNNTERKPKGLWTANTGGDKINYYEATTERDEAEYVVKEIMKHQRNGKKYSDMAILYRTNAQSRVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGVGPSSVEKIQTYAVQNNISMFDALGEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVEEVLVKSGYRDMLDREQTLESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTESGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSDDDHEMEEERRICYVAITRAEETLYITNATTRMLFGRSQSNMPSRFLKEIPEDLMESHSGSKRQTIQPKAKPTQKRGFSKRTTSSKKQVTSSDWKVGDKVTHKAWGEGMVSNVNEKNGSVELDIIFKSEGPKRLLAQFAPIEKKED
>NZ_CP031280.1|WP_119622529.1|906748_907441_+|heptaprenylglyceryl-phosphate-synthase
MYNIKQWRHVFKLDPAKTISDNDLDAICMSNTDAIILGGTDNVTEDNVIQLMSRVRRYPLPLVLEVSNIESVMPGFDFYFIPTVLNSNNVKYHNGMLLEALKEYGHVIDFDEVIFEGYLVMNEDSKVAQRTNANTQLDINDIDAYALMANELYRFPIMYLEYSGNYGEVDTVKSVKDTLTTTQLFYGGGITTLSQAKEMAEYADTIVVGDIIYKDIKKALKTVKVKESSK
>NZ_CP031280.1|WP_154874258.1|906264_906567_+|hypothetical-protein
MQIEKLRGDVLNELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILNRLNIDTKE
>NZ_CP031280.1|WP_126568098.1|904863_906159_+|adenylosuccinate-lyase
MIERYSREEMSSIWTDQNRYEAWLEVEILASEAWSELGYIPKEDVKKIRQNAKVDVERAKEIEQETRHDVVAFTRQVSETLGDERKWVHYGLTSTDVVDTALSYVIKQANDIIEKDLERFIKVLEDKAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMQRNLKRFKDVREEIEVGKMSGAVGTFANIPPEIESYVCKHLGLGAAPVSTQTLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSENITGISRVIRGYITTAYENVPLWHERDISHSSAERIMLPDVTIALDYALNRFTNIVDRLTVYEENMQANIDKTFGLIYSQRVLLSLINKGMVREEAYDTVQPKAMKSWETKTPFRELIEQDSKITDVLSKEDLDECFNPKHHLNQVDTIFKRASLE
>NZ_CP031280.1|WP_046467430.1|918521_919493_+|diacylglycerol-kinase
MRKRARIIYNPTSGKELFKRMLPDVLIKLEKAGYETSAYATEREGDATLEAERALDNNYDILIVAGGDGTLNEVVNGIAEQPNRPRLGIIPMGTVNDFGRALHLPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGSFAYYIKGFEMLPQMKAVDLRIEYDDKVFQGEALLFLLGLTNSMAGFEKLVPDAKLDDGYYTLIIVEKANLAELGHIMTLASRGEHTKHPKVIYEKAKSINISSFTDMQLNVDGEYGGKLPANFLNLERHIDVFTPHDIHNEELIDQPTVTPQLKSEDHQQNEDK
>NZ_CP031280.1|WP_017637866.1|919571_920933_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
METLKKNEIKTGQVLDLTHEGHGVVKIDRYPIFVPNALINETIEYKIIKVKKNFAIGKLLNVIVESDSRVEPPCVYYDKCGGCQLQHMTYQAQLTMKKEQVINLFHRKGSFNDTVIHDTVGMEDPWRYRNKSQIPIGLNNNKKPIMGFYRQRSHDIIDMDSCLIQDEKHQQVMNDVKQLISELNISVYNEKTKKGLLRHLVVRTGHYTNQMMIILVTNGKAFKQANQLVEALVKLHPNVTSIKQNINDAHSNVIMGRKSITLYGTDEIEDKLSEITFNISDQSFYQINSHQTEKLYNQALEYAQLTGNEIVLDTYCGIGTIGLYMAGKSKHVYGVEVVPSAIKDAEENATINQLENTTFVCGKAEEVILKWKAEGIRPDVVMVDPPRKGCDETFIKTLLELNPKRIVYISCNPSTQQRDAQLLSQQYDLKEITPVDMFPQTTHIETVALFERK
>NZ_CP031280.1|WP_017637865.1|921077_921620_+|DUF3267-domain-containing-protein
MHKIDLFPDKINLRRFVLMQIVLVMFVILFTYKWAYKITHIIEQNILLNLVYGFAGFVILLIVHEFIHHILFILFSKGEKPQLKYKKGTMILQYTESCFNRWQFSIIMLAPLIIISSILLVLISTYAYSSLIFMFSIHVGYCVFDILLVSLALASKFKYIQKYDEGLYLYQHKPNEMHHE
>NZ_CP031280.1|WP_017637864.1|921760_922831_+|DNA-polymerase-IV
MEERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASNRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYYVTSRFDAYREASKQIMDIFRSYTEIVEPMSLDEAYLDITHLVRPDLPASTIANFIRRDILEQTELTASAGVSYNKFLAKLASGMNKPNGITVIDYNNVHDILMNLDIGEFPGVGKASEKVMHNNNIFTGQDLYNKDEFELIRLFGKRGRGLYNKARGIDYNEVKATRIRKSVGTERTFATDVNDDDEILRKVWELSGKTAERLNKLQKSGKTVTVKIKTYQYETLSKQTSLRDPVNSETDIYNIAYTLYTELKDPDIPIRLIGVTVGNLEQSAYRNMTIYDFL
>NZ_CP031280.1|WP_017637863.1|922862_923414_-|3'-5'-exonuclease
MKNAFVALDFETANGKRTSICSVGMVKVIDNKITESFHTLVNPNDYFSEQNINVHGIHPEDVVSSPDFAYVYPYMMQFIEELPVVAHNAAFDMNVLHQSIQSIGLETPHLTYFCSYQLAKRTVQSHRYGLKHMMDFYKLDFHGHHDALNDAKACAMITFRLLKHYDDLSSMLNIYGKDLKDKG
>NZ_CP031280.1|WP_154874264.1|923752_924253_-|H-type-ferritin-FtnA
MLNKELLDALNEQMNHEYFAAHAYMAMASYCDSESYDGFANFYIQQAKEERFHGKKIYDYINDRGGHAKFTALPAPKVDFNSILETFKDGLAQEQDVTKRFYNLSEIAHREKDYATISFLNWFLDEQVEEESMFETHIDYLNRIGDDCNTLYLYEKELATRSFDEE
>NZ_CP031280.1|WP_017637860.1|924447_925761_+|Mur-ligase-family-protein
MRQWTATHLAKLARKASRAVGKNGTDLPGQIARRVDQNILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANHIDIIHNNEGANMAAGITSAFIMQTTKQTKIAIIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAKSISDKGIKLLLNADDPFVSRLKIASETRVYYGMKAHAHEFEQSTMNESRYCPNCGRLLEYDYIHYNQIGHYHCECGFKREQPKYEVTSFETSPFLKLNIGETSFNMKIAGDFNAYNALAAYTVLRELGLNDESIQKGFETYTSDNGRMQYFSLNQKEAMINLAKNPAGMNASLSVGEQLEGRKVYVISLNDNAADGRDTSWIYDADFEKLSNQDIEAIIVTGNRAEELQLRLKLAEVDVPVVLERDIYKATAKTMDYTGFTVAIPNYTSLSPMLEQLNRSFEGGQS
>NZ_CP031280.1|WP_126567677.1|925760_926486_+|type-1-glutamine-amidotransferase
MKHELTIYHFMSDKLNLYSDIGNIIALKMRAKKRDIQLKVVEINETDNVTFEDCDIFFIGGGSDREQSLATKQLSKIKTPLKEAIEDGMPGLTICGGYQFLGTKYITPDGTELDGLGILDFYTESKENRLTGDIIIESDTFGTIVGFENHGGRTFHNFGTLGHVTHGYGNNDTDRQEGIHYKNLLGTYLHGPILPKNHEITDYLLEKACERKGIPFEPKQLDNTEEEAAKQVLIDRANKNK
>NZ_CP031280.1|WP_029056008.1|926871_927858_-|aromatic-acid-exporter-family-protein
MNEKWYKHIIGARTIKTGLATFFTTVFCMLLNLTPIFAILTAIVTIEPTAKASIKKGYRRLPATVIGALFAVVFTFIFGDQSPFAYACSATFTILACTKLNLQVGTTVAVLTSVAMIPGIHEAYVFNFFSRLLTALIGLVTAGLVNFMILPPKYYSQLEDNLYRSEDKMYDLFNQRCHELLLGRFQSDKSNKKIIQISNLNQKIDLLTGYQRDELTYHQNKAEDWKKLNKLTSRAYTNRLLMTHLANIIYLPKDAYVFFTPDEKLAILKISTSISHILCDGTFKRERKSASTLKSSVKQLEEFDQNQIKSHLIYEILLIYKILDHRYA
>NZ_CP031280.1|WP_017637857.1|928023_928779_+|type-I-methionyl-aminopeptidase
MIVKTDEELQALKEIGYICAKVRDTMQAETKPGITTKELDNIAKELFEEHGALSAPIHDENFPGQTCISVNEEVAHGIPGKRIIREGDLVNIDVSALKNGFYADTGISFVVGEASDPLKQKVCDVATMAFENAMAKVKPGTKLSNIGKAVHATARQNDLTVIKNLTGHGVGQSLHEAPNHVMNYYDPKDKTLLKEGLVIAVEPFISSKATFVTEGKNEWAFETSDKSYVAQIEHTVIVTKDGPLLTTKIDN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

992408 : 1021664

Staphylococcus_phage(88.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107999778.1\|992408_992648_-	hypothetical protein	Q4ZCB8	Staphylococcus_virus	4.9e-12	46.2
WP_126567646.1\|993100_994510_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	5.4e-175	63.0
WP_126567647.1\|994499_995516_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.0e-98	55.6
WP_017637320.1\|995496_995754_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.7e-39	89.4
WP_126567648.1\|995820_996288_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.5e-49	59.4
WP_126567649.1\|996274_997066_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.5e-105	75.1
WP_126567650.1\|997088_998681_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.9e-286	89.4
WP_017637316.1\|999063_1000263_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.5e-197	87.6
WP_154874291.1\|1000384_1001293_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	6.4e-105	79.0
WP_154874293.1\|1001412_1002249_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.5e-113	69.3
WP_117238939.1\|1002312_1002669_-	CrcB family protein	NA	NA	NA	NA
WP_117238940.1\|1002665_1003028_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.1e-31	59.8
WP_017638160.1\|1003119_1003425_-	hypothetical protein	NA	NA	NA	NA
WP_017638161.1\|1003690_1004404_+	transaldolase	E3SM94	Prochlorococcus_phage	1.1e-19	34.4
WP_107999784.1\|1004593_1005049_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.9e-25	59.2
WP_017638163.1\|1005023_1005470_-	hypothetical protein	NA	NA	NA	NA
WP_126567651.1\|1005474_1005963_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.0e-32	53.6
WP_029055630.1\|1006159_1006384_+	hypothetical protein	NA	NA	NA	NA
WP_017638292.1\|1006666_1007527_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.9e-39	40.9
WP_154874295.1\|1007898_1009398_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.4e-19	78.6
WP_154874297.1\|1009884_1010928_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.7e-138	67.6
WP_070454018.1\|1010934_1011567_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.4e-79	69.5
WP_154874299.1\|1011583_1012765_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	7.4e-178	76.3
WP_070454014.1\|1012777_1013236_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.9e-61	88.0
WP_126567653.1\|1013275_1014277_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	6.1e-141	75.5
WP_126567654.1\|1014509_1015337_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_017638284.1\|1015699_1016101_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_070454011.1\|1016153_1016723_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	7.2e-70	69.2
WP_017638282.1\|1016719_1017673_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.5e-67	83.2
WP_117238945.1\|1017778_1018960_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	6.3e-177	79.3
WP_046466834.1\|1019249_1021664_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.6

DBSCAN-SWA_2

1153752 : 1165485

uncultured_Mediterranean_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154874348.1\|1153752_1154757_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	5.8e-06	26.0
WP_154874350.1\|1154758_1155784_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_154874352.1\|1155805_1156945_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.4e-86	46.1
WP_017637062.1\|1156960_1157221_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.7e-06	41.2
WP_126567940.1\|1157539_1159819_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.3e-31	33.1
WP_126567938.1\|1159942_1162225_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.1e-66	29.5
WP_029055702.1\|1162239_1162758_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.3e-29	46.5
WP_154874353.1\|1163295_1165485_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.5e-11	38.0

DBSCAN-SWA_3

1738591 : 1747061

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017637042.1\|1738591_1739158_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.0e-28	38.0
WP_029055540.1\|1739160_1740189_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.1e-68	44.8
WP_017637040.1\|1740181_1741666_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.8e-46	32.8
WP_126567829.1\|1741644_1743834_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.2e-138	39.0
WP_154874558.1\|1743826_1744498_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_017637037.1\|1744499_1744760_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_154874560.1\|1744759_1746631_-	5-(carboxyamino)imidazole ribonucleotide synthase	A0A1D7SE76	Cyanophage	5.1e-48	43.3
WP_017637034.1\|1746578_1747061_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-21	44.7

DBSCAN-SWA_4

1939941 : 1989821

uncultured_Caudovirales_phage(66.07%)

capsid,integrase,terminase,protease,tail

attL 1930906:1930924|attR 1994664:1994682

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1930906:1930924	attL	NA	NA	NA	NA
WP_017636876.1\|1939941_1940532_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	4.8e-53	55.3
WP_017636877.1\|1941966_1942164_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	1.3e-18	82.1
WP_017636880.1\|1942704_1944117_-	CHAP domain-containing protein	A0A2H4J2K9	uncultured_Caudovirales_phage	1.2e-275	95.5
WP_017636881.1\|1944128_1944380_-	PTS mannose transporter subunit IID	A0A2H4J5P6	uncultured_Caudovirales_phage	7.6e-40	97.6
WP_017636882.1\|1944431_1944833_-	hypothetical protein	A0A1W6JPV8	Staphylococcus_phage	7.1e-64	97.0
WP_124760825.1\|1944819_1945191_-	hypothetical protein	A0A2H4J968	uncultured_Caudovirales_phage	2.2e-59	90.2
WP_017636884.1\|1945274_1945562_-	hypothetical protein	A0A2H4J2K8	uncultured_Caudovirales_phage	4.3e-39	93.4
WP_154874639.1\|1945741_1949272_-	hypothetical protein	A0A2H4JAK2	uncultured_Caudovirales_phage	0.0e+00	66.8
WP_154874641.1\|1949284_1950775_-\|tail	phage tail protein	A0A2H4J7M6	uncultured_Caudovirales_phage	3.1e-274	91.3
WP_154874643.1\|1950774_1957299_-\|tail	phage tail tape measure protein	A0A2H4JDT7	uncultured_Caudovirales_phage	2.3e-220	63.5
WP_017636890.1\|1957562_1957922_-	hypothetical protein	A0A2H4J5B3	uncultured_Caudovirales_phage	2.6e-49	82.9
WP_051009442.1\|1958176_1958791_-\|tail	phage tail protein	A0A2H4JET0	uncultured_Caudovirales_phage	1.7e-80	72.1
WP_017636893.1\|1958790_1959198_-	hypothetical protein	A0A2H4JBV0	uncultured_Caudovirales_phage	9.7e-53	76.3
WP_017636894.1\|1959194_1959596_-	hypothetical protein	A0A2H4JBU3	uncultured_Caudovirales_phage	4.3e-45	65.9
WP_017636895.1\|1959592_1959958_-	hypothetical protein	A0A2H4J5E7	uncultured_Caudovirales_phage	5.4e-55	79.3
WP_017636896.1\|1959941_1960238_-	hypothetical protein	Q4ZD73	Staphylococcus_phage	4.1e-37	81.1
WP_154874645.1\|1960255_1961446_-\|capsid	phage major capsid protein	Q4ZD74	Staphylococcus_phage	8.2e-185	82.6
WP_126567578.1\|1961509_1962403_-\|protease	Clp protease ClpP	A0A2H4J3J2	uncultured_Caudovirales_phage	7.6e-50	56.7
WP_017636899.1\|1963546_1965208_-\|terminase	terminase large subunit	A0A2H4J5C2	uncultured_Caudovirales_phage	1.6e-306	90.8
WP_017636900.1\|1965204_1965564_-	hypothetical protein	A0A2H4JD45	uncultured_Caudovirales_phage	7.8e-46	79.0
WP_017636901.1\|1965764_1966088_-	HNH endonuclease	Q4ZD22	Staphylococcus_phage	3.5e-37	69.2
WP_017636902.1\|1966217_1966649_-	hypothetical protein	A0A2H4J3L6	uncultured_Caudovirales_phage	5.8e-64	83.9
WP_017636903.1\|1966757_1967132_-	hypothetical protein	NA	NA	NA	NA
WP_017636904.1\|1967217_1967421_-	DUF1514 domain-containing protein	A0A0D4DCK3	Staphylococcus_phage	4.7e-08	48.4
WP_017636905.1\|1967420_1967594_-	hypothetical protein	A0A2H4J2Q0	uncultured_Caudovirales_phage	3.1e-24	98.2
WP_017636906.1\|1967586_1967739_-	DUF1381 domain-containing protein	A0A2H4J497	uncultured_Caudovirales_phage	7.3e-14	79.2
WP_154874647.1\|1968146_1968404_-	hypothetical protein	A0A0N9RRV3	Staphylococcus_phage	2.0e-11	55.1
WP_154874649.1\|1968440_1968761_-	hypothetical protein	A0A2H4J4F6	uncultured_Caudovirales_phage	1.1e-48	93.3
WP_017636910.1\|1968782_1969139_-	nuclease	A0A2H4JBE2	uncultured_Caudovirales_phage	4.5e-62	98.3
WP_017636911.1\|1969135_1969336_-	hypothetical protein	A0A2H4J2P2	uncultured_Caudovirales_phage	3.8e-26	90.9
WP_154874651.1\|1969332_1970013_-	hypothetical protein	A0A2H4J489	uncultured_Caudovirales_phage	2.0e-127	98.2
WP_017636913.1\|1970019_1970454_-	DUF3310 domain-containing protein	A0A2H4JAP3	uncultured_Caudovirales_phage	2.4e-78	97.9
WP_017636914.1\|1970458_1970716_-	hypothetical protein	A0A2H4JE18	uncultured_Caudovirales_phage	5.6e-06	40.3
WP_017636915.1\|1970717_1971068_-	helix-turn-helix transcriptional regulator	A0A2H4IYG5	uncultured_Caudovirales_phage	6.4e-21	41.4
WP_017636917.1\|1971238_1971646_-	RusA family crossover junction endodeoxyribonuclease	A0A2H4J8S2	uncultured_Caudovirales_phage	2.7e-63	85.2
WP_017636918.1\|1971655_1971883_-	DUF3269 family protein	A0A2H4J2N4	uncultured_Caudovirales_phage	1.8e-32	90.5
WP_017636919.1\|1971851_1972082_-	hypothetical protein	A0A2H4J5S4	uncultured_Caudovirales_phage	2.0e-31	84.2
WP_017636921.1\|1973316_1973670_-	hypothetical protein	A0A2H4J445	uncultured_Caudovirales_phage	1.7e-37	77.8
WP_026083463.1\|1973675_1974422_-	DnaD domain protein	Q4ZCW8	Staphylococcus_virus	5.0e-95	68.1
WP_017636923.1\|1974466_1974949_+	hypothetical protein	A0A2H4JC39	uncultured_Caudovirales_phage	2.0e-73	90.0
WP_124760781.1\|1974972_1975638_-	hypothetical protein	A0A2H4J481	uncultured_Caudovirales_phage	2.4e-117	92.3
WP_017636925.1\|1975651_1976065_-	single-stranded DNA-binding protein	A0A1W6JNT4	Staphylococcus_phage	2.1e-50	99.0
WP_154874653.1\|1976680_1976908_-	DUF2483 domain-containing protein	A0A2H4J633	uncultured_Caudovirales_phage	4.2e-29	84.0
WP_017636928.1\|1976879_1977098_-	hypothetical protein	A0A2H4J2M6	uncultured_Caudovirales_phage	1.1e-23	93.5
WP_017636930.1\|1977457_1977772_+	hypothetical protein	NA	NA	NA	NA
WP_017636932.1\|1977898_1978216_-	DUF771 domain-containing protein	A0A2H4J474	uncultured_Caudovirales_phage	8.1e-55	100.0
WP_017636934.1\|1978386_1978620_-	hypothetical protein	A0A2H4J7P2	uncultured_Caudovirales_phage	3.7e-33	100.0
WP_017636936.1\|1978909_1979128_-	hypothetical protein	Q4ZCA9	Staphylococcus_virus	1.6e-17	61.4
WP_009382133.1\|1979930_1980125_-	helix-turn-helix transcriptional regulator	A0A0F6N3M9	Staphylococcus_phage	1.1e-22	89.1
WP_017636938.1\|1980388_1980727_+	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	4.9e-42	73.6
WP_017636939.1\|1980740_1981412_+	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	2.5e-45	46.1
WP_017636941.1\|1981714_1981903_+	hypothetical protein	NA	NA	NA	NA
WP_096807837.1\|1981973_1982153_+	hypothetical protein	NA	NA	NA	NA
WP_017636942.1\|1982172_1982574_+	hypothetical protein	A0A2H4JAR6	uncultured_Caudovirales_phage	3.0e-38	59.4
WP_029056498.1\|1982548_1983034_+	hypothetical protein	H9A0X8	Staphylococcus_phage	2.1e-09	76.3
WP_017636944.1\|1983207_1983468_+	transcriptional regulator	NA	NA	NA	NA
WP_017636947.1\|1984531_1985569_+\|integrase	site-specific integrase	A0A2H4J2K7	uncultured_Caudovirales_phage	1.3e-194	99.4
WP_017636948.1\|1985703_1986648_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.0e-53	39.6
WP_046466468.1\|1986800_1987796_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.5e-51	42.6
WP_017636950.1\|1987792_1988704_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.6e-07	33.6
WP_154874655.1\|1988879_1989821_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.7e-82	49.0
1994664:1994682	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2021847 : 2035447

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046466457.1\|2021847_2022621_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.9e-15	31.2
WP_126567463.1\|2022617_2023577_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	8.0e-05	53.3
WP_017637112.1\|2023566_2024535_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-143	81.1
WP_002450939.1\|2024744_2025719_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.1e-179	96.3
WP_126567461.1\|2026109_2028215_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	94.7
WP_026083473.1\|2028177_2028576_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	3.7e-57	78.8
WP_096807842.1\|2029370_2030255_+	DMT family transporter	NA	NA	NA	NA
WP_017636674.1\|2030272_2030773_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.5e-52	66.2
WP_017636673.1\|2031104_2032610_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	7.8e-55	31.7
WP_017636672.1\|2032758_2033688_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_029056470.1\|2033764_2034301_-	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	3.7e-28	37.8
WP_154874665.1\|2034391_2035447_-	histidinol-phosphate transaminase	A0A142C026	Faustovirus	1.8e-18	25.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031281

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. NZ_CP031280

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection