CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	10 crisprs	csa3,DEDDh,cas3,DinG	7	1	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041037_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_1

295013-295146

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041037_1

>merge|NZ_CP041037|1|295013-295146|PILER-CR
TATTGAAGAAGATACAAACAAAGACAAACCTAATTATCAATTCGGTGGACACAACATTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>NZ_CP041037|1|1|295013-295146|PILER-CR
TATTGAAGAAGATACAA	ACAAAGACAAACCTAATTATCAATTCGGTGGACACAACATTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_000721337.1\|299292_300159_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP041037.1\|WP_001621913.1\|283218_283422_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000074005.1\|287399_288164_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP041037.1\|WP_000755946.1\|309765_310158_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP041037.1\|WP_000217716.1\|306827_307136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000990133.1\|288317_288998_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP041037.1\|WP_000581910.1\|313326_314085_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP041037.1\|WP_000876662.1\|289021_290575_+\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP041037.1\|WP_000088735.1\|310159_313021_+\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|223989
NZ_CP041037.1\|WP_000359185.1\|301503_301854_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|130944
NZ_CP041037.1\|WP_001117047.1\|285895_286312_+\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|227213
NZ_CP041037.1\|WP_145325998.1\|307825_309634_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP041037.1\|WP_000481425.1\|290691_292050_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP041037.1\|WP_000678764.1\|307275_307542_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_001838087.1\|292081_292384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_043854593.1\|296305_299113_+\|fibronectin-binding-protein-FnbB	unknown	unknown	gnl\|CDD\|371043
NZ_CP041037.1\|WP_001790696.1\|292432_292534_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000586384.1\|283933_285757_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP041037.1\|WP_000289134.1\|286542_287235_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP041037.1\|WP_000972291.1\|314196_314991_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_000721337.1\|299292_300159_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	5.5142e-177
NZ_CP041037.1\|WP_000876662.1\|289021_290575_+\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP041037.1\|WP_000074005.1\|287399_288164_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.57514e-33
NZ_CP041037.1\|WP_000755946.1\|309765_310158_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	6.76367e-56
NZ_CP041037.1\|WP_000581910.1\|313326_314085_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	1.62523e-131
NZ_CP041037.1\|WP_000990133.1\|288317_288998_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.91306e-44
NZ_CP041037.1\|WP_000972291.1\|314196_314991_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	2.54676e-129
NZ_CP041037.1\|WP_000088735.1\|310159_313021_+\|DUF3427-domain-containing-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.83705e-91
NZ_CP041037.1\|WP_000359185.1\|301503_301854_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.33529e-19
NZ_CP041037.1\|WP_001117047.1\|285895_286312_+\|DUF2188-domain-containing-protein	gnl\|CDD\|227213	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown].	9.39579e-63
NZ_CP041037.1\|WP_145325998.1\|307825_309634_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP041037.1\|WP_000481425.1\|290691_292050_+\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.53789e-168
NZ_CP041037.1\|WP_043854593.1\|296305_299113_+\|fibronectin-binding-protein-FnbB	gnl\|CDD\|371043	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin. This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). SdrG binds to its ligand with a dynamic "dock, lock, and latch" mechanism which represents a general mode of ligand-binding for structurally related cell wall-anchored proteins in most Gram-positive bacteria. The C-terminal part of SdrG(276-596) is integral to the folding of the immunoglobulin-like whole to create the docking grooves necessary for Fg binding. The domain is associated with families of Cna_B, pfam05738.	4.98673e-29
NZ_CP041037.1\|WP_000586384.1\|283933_285757_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	3.71047e-89
NZ_CP041037.1\|WP_000289134.1\|286542_287235_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	5.59791e-85

>NZ_CP041037.1|WP_001790696.1|292432_292534_+|hypothetical-protein
MLLKTEQYRLAFIKFKKLMNFAFKGRYYSEKQS
>NZ_CP041037.1|WP_001838087.1|292081_292384_+|hypothetical-protein
MQYIALKHVYFYAENRLKYSKSERYKKYIGYFRVMKGVSRHVFVRIVQAIIMKRLVYCFKLDNDEFNLKNKYKKYKPFVTRVSDDLNTIYRYISNNKIIN
>NZ_CP041037.1|WP_000481425.1|290691_292050_+|gluconate-permease
MFNEIWPLISVVLGIVILLVLIIGFKLNTFISLIITSMITALMLGIPLTKIMETIEKGMGSTLGHIALIFGLGAILGKLLADGGGATRIADTLIQKFGQKHVQWAMLVAAFIVGIALFFEVGLVLLIPLVFTVAKRANVSVLKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANVGDVLLYGMIIAIPVTLIAGPIFNKVAQKMIPSAYTREGDISALGAQKEFTDQEMPGFGMSLLTATLPVILMLVSTITQLVTGHDKPTNLFESIIYMIGTAGTAMLIAVLFAIVTMGLMRKRKMNHIMESVTNAIYPIGMMLLIIGGGGTFKQVLIDGGVGNTIAKMFEGTEMSPILLAWIVAAVLRIALGSATVAAISTTGIVLPLLQSSDVNVALVVLAIGAGSVILSHVNDAGFWMFKEYFGLTVKETFLTWSLLETIISVSGIIFILFISLFV
>NZ_CP041037.1|WP_000876662.1|289021_290575_+|gluconokinase
MKYMIGVDIGTTSTKSVLYDENGTFIMKHQIGYDLHTPNVDVSEENPDELFDAVLMTIKYVMRESKVNKDDIKFVSFSAQMHSLIAMDQKHQRLTNNITWADNRAAKYATVINEVHDGNAIYQRTGTPIHPMSPLVKIFWMKHEWQDVFQRTAKFADIKTYIFYHLFDTYIIDYSMASATGMFNLETLDWDVGALELLGISKEMLPELVPTTYVMKGMKERYATLMGLNEDTPFVIGASDGVLSNLGVNSVGKGEVAVTIGTSGAIRTVIDKPRTDYKGRIFCYVLTEDHYVIGGPVNNGGVVLRWLRDELLASEVETAKRLGVDPYDVLTQIAKRVKPGADGLIFHPYLAGERAPLWNANARGSFFGLTLSHKKEHMIRAALEGVLYNLYTVYLALIEVMNETPKMIKATGGFAKSEVWRQMMSDIFDTELVVPESYESSCLGACVLGLKAVGDIEDFSIVSSMVGATNNHTPFEENVAVYQELVSIFINLSRSLTENYEQIADFQRQHMAENKTQ
>NZ_CP041037.1|WP_000990133.1|288317_288998_+|GntR-family-transcriptional-regulator
MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKLLQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEMMKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNPQDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
>NZ_CP041037.1|WP_000074005.1|287399_288164_+|MerR-family-transcriptional-regulator
MSNYSTGELAKLCNVTTRTIQYYDRKGILKPQGFTEGKRRVYTEQQRQTLELILLLKDLGCALSDIDMLLKGEGTLKTLNTLLTMKQQEINQQVKQQQAVLNKIKNVQYYVNEASTSPITHLKDIEHVMSKSAEMKSIRRNIWISAGIIGIIQYSSIISAILMKNKWPFLIALPFMICYGIGVTFYYQQKVAYLCPNCQHIFSPSLWAVIKAKHTATTRRFECPNCHETHYCIEVPKAHMSTEQLEISRIQHNN
>NZ_CP041037.1|WP_000289134.1|286542_287235_+|GTP-pyrophosphokinase-family-protein
MYVDRKPSLYLEDLRHDFKNSLSKFENGDEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEKLNRKGLQISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQLIKRKDYIQHPKENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDMWASLEHKIRYKNKAETEKYRDLLKECATEITEVENKLQQIHSEITE
>NZ_CP041037.1|WP_001117047.1|285895_286312_+|DUF2188-domain-containing-protein
MPFTMKGYPEKWKDFEVIKRQKAIEIANAMLKEGYLEKDVVPIAAKKAKDWYRALSKEEIKALEEENFVQFHTATMEKTEVDSEYATTDNEEHIQEQSNQDKSYFDSESIGNQSGGVRQREPLMDGPHPKVVESFKDV
>NZ_CP041037.1|WP_000586384.1|283933_285757_+|FUSC-family-protein
MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYNDKSAFLQVAKTAVDNFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSEENVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYTAIMMIAIFIALMFDFEKAYWIPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLGQRTASALLPNVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLATFENIAKHLELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV
>NZ_CP041037.1|WP_001621913.1|283218_283422_+|hypothetical-protein
MKENLEKYIRSLPLIGLIISIFLIILYFLIYRVEGNFCVIILYCLLPLFVNTSLYILYVIIFRYFKK
>NZ_CP041037.1|WP_043854593.1|296305_299113_+|fibronectin-binding-protein-FnbB
MKSNLRYGIRKHKLGAASVFLGTMIVVGMGQEKEAAASEQNNTTVEESGSSATESKASETQTTTNNVNTIDETQSYSATSTEQPSQSTQVTTEEAPKTVQAPKVETSRVDLPSEKVADKETTGTQVDIAQPSNVSEIKPRMKRSTDVAVVAGEAKATGTDVTSKVKVTESSLEGHKQGTSVVNPHNAERVTLKYKWKFGEDIKPGDYFDFTLSNNVETHGISTLRKVPEIKSTDGQVMANGQVINERTIRYTFTDYINGKQNLTAELSLNLFIDPTTVTKKGKQKVEVSLGQNKISQEFDIQYLDGVKNPMGVTVNGRIHTLNKEEGKFSHFAYVKPNNQSLSSVTVTGQVTSGYKQDGGNPTVKVYKYTGKEGLAESVFADLSKNDQYEDITSQLSISYNNGGYTINFESLNNNKDYVIKYEGAYDAKSESLQLQTHLSAYNDYYYYPYYPVQLTWKNGVAFYSNNAQGDGKDKPNDPIIEKSEPIDLDIKSEPPVEKHELTGTIEESNDSKPIDFEYHTAVEGAEGHAEGIVETEEDSIHVDFEESTHENSKHHADVVEYEEDTNPGGGQVTTESNLVEFDEESTKGIVTGAVSDHTTVEDTKEYTTESNLIELVDELPKEHGQAQGPIEEITENYQHISHSGLGTENGHGNYGVIEEIEENSHVDIKSELGYEGGQNSGNQSFEEDTEEDKPKYEQGGNIVDIDFDSVPQIHGQNNGDQSFEEDTEKDKPKYEQGGNIIDIDFDSVPHIHGFNKHNEIIEEDTNKDKPNYQFGGHNSVDFEEDTLPQVSGHNEGQQTIEEDTTPPIVPPTPPTPEVPIVPPTPPTPEVPSEPETPTPPTPEVPAEPGKPVPPAKEEPKKPSKPVEQGKVVTPVIEINEKVKAVAPTKKAQSKKSELPETGGEESTNKGMLFGGLFSILGLALLRRNKKNHKA
>NZ_CP041037.1|WP_000721337.1|299292_300159_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEEAARAGIEDIIIVTGRHKRAIEDHFDSQKELEMVLKEKGKSELLEKVQYSTELANIFYVRQKEQKGLGHAISSARQFIGNEPFAVLLGDDIVESEVPAVKQLIDVYEETGHSVIGVQEVPEADTHRYGIIDPLTKNGRQYEVKKFVEKPAQGTAPSNLAIMGRYVLTPEIFDYLKTQKEGAGNEIQLTDAIERMNNDNQVYAYDFEGERYDVGEKLGFVKTTIEYALKDDSMREELTRFIKELGL
>NZ_CP041037.1|WP_000359185.1|301503_301854_+|winged-helix-DNA-binding-protein
MDKLAMKSNIAILTTVLNIFELRKNLREHYGLTLDDYLVLIYLNEFKNRQGKYFMRDVITYIGLDQSRIVKSVKELVKKGYLSKSRDLKDSRNVILTLTELQQKTIENILNEIIYR
>NZ_CP041037.1|WP_000217716.1|306827_307136_-|hypothetical-protein
MTVNIVFSIVFCISMVILGIYVEITKDFTLISYINQTTIADNHKNQIAYIFALCISLSAVFLMSSILCFEYDFIALAFLFLTIALLLIALFYVCFYKITKYP
>NZ_CP041037.1|WP_000678764.1|307275_307542_-|hypothetical-protein
MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAHTLNSSSAIIEQHTMSNLASLDLYAPVRNITSSRDIHPIYFMTKD
>NZ_CP041037.1|WP_145325998.1|307825_309634_-|phospho-sugar-mutase
MHFHTHLLYNTCEKYYIIDVFFYFWDVFLYNSLHKCKGFSFHVLLSLTEILKGCLATMDKELWIERANDSLVKHFYEQQSDIEQREGFESKLTFGTAGIRGKFGLGEGRLNKFTIEKLALGLARYLNAKTNSPTIVIHYDIRHLSTEFAQIIANVLANHQITVYLPDTYKTTPELSFAVRNLNTTAGIMITASHNPKNYNGIKVYGSDGAQLSTDASELASRYIEDVGDPLQVDTSFSKQNSSYIKPFPKSVTDDYMKHIQNMIGYIPKSDLQVVFTSLHGTSVPIVPELLKSLNFNQFNLVEAQCKPDPNFSSVQSANPEDHRAFDQAVELANKSHADLLISTDPDADRLGIAERNAHGHITYFNGNQIGALLLNYRIQQTSQLRHRLMIQSIVSSELTKSLARYNNVKYKEVLTGFKFIAQEIRQLDDHQNMIFAFEESYGFLSEPFVRDKDAVQIVPLIIKYASELKLYGKTLKDELEQIYQTVGRHEDTLFSHTLEGLEGKKKINAIMTKFRSNPPQEIQGLKVKAIEDYLTSEVYHLDKDTTSQINSPKSNVIRVLFDEGFIALRPSGTEPKIKLYVSLKCPNFDDVAQKINAMIFS
>NZ_CP041037.1|WP_000755946.1|309765_310158_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MKKVINVVGAIIFSDNKILCAQRSEEMSLPLMWEFPGGKIEKNETEKEALIREIREEMKCDLIVGDKVITTEHEYDFGIVKLTTYKCTLNKELPTLTEHKSIEWLSINELDKLNWAPADIPAVNKIMTEG
>NZ_CP041037.1|WP_000088735.1|310159_313021_+|DUF3427-domain-containing-protein
MSRLLNDFNQSLKKGFIDKDISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAFITESGLASLKAQLLDLSNKGVKGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHAKGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKNGDLVDSVKNEFELLWQKSTPLTQQWIKSYKESFEYRSLEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDKAKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDFGLLTGKHRDVDAKYLFATIQTLSRDDNFKQFDENEFDYIVFDEAHRSAASTYQRVFNYFKPKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESDILCPFHYFGVTDYVHQGIKEDDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGLRKSSNKEYVTVIDFIGNYKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINFEEVAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLLMDFIQQHSIDPSVIFSKFSNYYEFLVRYKKIDTLLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKMLNEVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIECNERMIRLSDAFTNALSNQTFKIFLEDLIELSKYNNEKYQKGKNGLILYNKYSREDFSKIFNWNKNGSSVIMGYMIRSQEMPIFITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKSKEVQKILSHRAKGIKMYIFVQKKDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYITN
>NZ_CP041037.1|WP_000581910.1|313326_314085_+|tandem-type-lipoprotein
MIHSKRLRLWLYLVLLAVFISACGMKEDKQIKENFNKTLSLYPTKNLDDFYDKEGFRDQEFEKGDKGTWIVDSEMVVELKDKKMESRSMVLYINRNTRTTKGNFIVRELWEDSKGYAQSKDTKYPVKMEHNRIIPTKPIADDKLRKEIENFKFFVQYGDFKDINDYKDGDISYNPNVPSYSAEYQLSNNDYNVKQLRKRYDIPTKKAPKLLIKGDGDLKGSSIGHKNLEFTFVENKEENIYFTDSINFKPTK
>NZ_CP041037.1|WP_000972291.1|314196_314991_+|tandem-type-lipoprotein
MMHSKKLTLGICLVLLIILSVGYVIMTKANGQNAQIKDTFNQTLKLYPTKNLDDFYDKEGFRDQEFKKGDKGTWIVNSGMNIQLKGGALKSREMVLYINRNTRTTKGYFIVGEITKDKKGYTHDKDKKYPVKMEHNQIIPTKPIKDEKLKKEIEGFKFFVQYGNFKDFKDYKNGDISYNPNVPSYSAKYQLSNDDYNIQQLRKRYDIPTKKAPELLLKGDGDLKGSSIGSKDLEFTFVQNKRENIYFTDSVEFTPSEDTSYESN

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Crispr_ID: NZ_CP041037_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_2

372264-372342

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041037_2

>merge|NZ_CP041037|2|372264-372342|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>NZ_CP041037|2|1|372264-372342|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_001046645.1\|378643_379651_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
NZ_CP041037.1\|WP_000783428.1\|381976_382954_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	unknown	unknown	gnl\|CDD\|273388
NZ_CP041037.1\|WP_145326002.1\|379628_380744_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223234
NZ_CP041037.1\|WP_001191923.1\|367799_369011_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP041037.1\|WP_001838076.1\|377283_378642_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
NZ_CP041037.1\|WP_000200945.1\|381457_381925_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP041037.1\|WP_001064816.1\|372647_374411_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041037.1\|WP_000831298.1\|369192_369852_-\|membrane-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000486494.1\|374435_376169_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041037.1\|WP_001185699.1\|361654_363733_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP041037.1\|WP_000779347.1\|371311_371698_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|225155
NZ_CP041037.1\|WP_001080281.1\|366434_367091_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227323
NZ_CP041037.1\|WP_001217917.1\|376619_377306_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
NZ_CP041037.1\|WP_000456489.1\|367203_367677_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP041037.1\|WP_000101538.1\|363870_365280_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP041037.1\|WP_000286881.1\|380754_381447_+\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
NZ_CP041037.1\|WP_000690200.1\|365565_366372_+\|phosphohydrolase	unknown	unknown	gnl\|CDD\|163441
NZ_CP041037.1\|WP_001176863.1\|369911_371054_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|272872
NZ_CP041037.1\|WP_000482647.1\|371836_371944_+\|type-I-toxin-antitoxin-system-Fst-family-toxin	unknown	unknown	unknown
NZ_CP041037.1\|WP_000916704.1\|382955_383903_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	unknown	unknown	gnl\|CDD\|369625

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_001046645.1\|378643_379651_+\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
NZ_CP041037.1\|WP_000783428.1\|381976_382954_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
NZ_CP041037.1\|WP_145326002.1\|379628_380744_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	2.5925e-139
NZ_CP041037.1\|WP_001191923.1\|367799_369011_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.25397e-73
NZ_CP041037.1\|WP_001838076.1\|377283_378642_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
NZ_CP041037.1\|WP_000200945.1\|381457_381925_+\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.000705213
NZ_CP041037.1\|WP_001064816.1\|372647_374411_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.21336e-146
NZ_CP041037.1\|WP_000486494.1\|374435_376169_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.79158e-143
NZ_CP041037.1\|WP_001185699.1\|361654_363733_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	4.40285e-103
NZ_CP041037.1\|WP_000779347.1\|371311_371698_+\|GtrA-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	1.07626e-22
NZ_CP041037.1\|WP_001080281.1\|366434_367091_-\|hypothetical-protein	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	2.51069e-72
NZ_CP041037.1\|WP_001217917.1\|376619_377306_+\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	3.26329e-70
NZ_CP041037.1\|WP_000456489.1\|367203_367677_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.70839e-37
NZ_CP041037.1\|WP_000101538.1\|363870_365280_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP041037.1\|WP_000286881.1\|380754_381447_+\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	9.94414e-131
NZ_CP041037.1\|WP_000690200.1\|365565_366372_+\|phosphohydrolase	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	4.17484e-107
NZ_CP041037.1\|WP_001176863.1\|369911_371054_-\|glycerate-kinase	gnl\|CDD\|272872	TIGR00045, Glycerate_kinase, glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation. [Energy metabolism, Other].	0
NZ_CP041037.1\|WP_000916704.1\|382955_383903_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.97441e-93

>NZ_CP041037.1|WP_000482647.1|371836_371944_+|type-I-toxin-antitoxin-system-Fst-family-toxin
MFNLLIDIMTSALSGCLVAFFAHWLRTRNNKKGDK
>NZ_CP041037.1|WP_000779347.1|371311_371698_+|GtrA-family-protein
MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLFHIEYMISHITGFIVAFVISYYLNCYFVYRVKPTWRKFISFPITQLVNASLQTVLLYVFVSWLNLPAEIAPFAGLVITIPITFVLSKWILKDSN
>NZ_CP041037.1|WP_001176863.1|369911_371054_-|glycerate-kinase
MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIPMADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDLLEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVKFTDVNGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSNPLLGENGATYIYGPQKGADAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVVFDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENYQHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ
>NZ_CP041037.1|WP_000831298.1|369192_369852_-|membrane-protein
MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPERYYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRALLNNDSDKVSNDPKVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKADSKLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDDNGGAN
>NZ_CP041037.1|WP_001191923.1|367799_369011_-|multidrug-effflux-MFS-transporter
MQSSKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVIVIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
>NZ_CP041037.1|WP_000456489.1|367203_367677_+|AraC-family-transcriptional-regulator
MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIEKYDVITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQADTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
>NZ_CP041037.1|WP_001080281.1|366434_367091_-|hypothetical-protein
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
>NZ_CP041037.1|WP_000690200.1|365565_366372_+|phosphohydrolase
MKIGTIADLHIDRHNKKTSEDYLEALVEIVKYKKLDILLIAGDISNHYQLTHQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPFIVNEEWAIIGHTGWYDYSFAAQRFSLEHLQKGKHYGATWQDKERISWGISDQNLSKIAAEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDIPYSIMGHVHFRKSVMDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI
>NZ_CP041037.1|WP_000101538.1|363870_365280_-|amino-acid-permease
MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSMSDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIAMVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGVTAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIGVPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSMLVSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKNSKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIFLFFFYKKYKTNAEKLAYEQRQNDSGHFRYDNQ
>NZ_CP041037.1|WP_001185699.1|361654_363733_-|sodium:proton-antiporter
MALLEAFLIFIFAVIISSVINNRFPQIPTAFIQIALGVVIFIIPIQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYFIHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGIISFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNNTLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWNTFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVVTILIAIAIYACRFVWVYFWYKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKGQAFEYRNDLLFIASFMVLISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQHFKNESKKDKSDTNYRPVLNQYYGELLFLLNSEPDNQNTKELKRLEDIAKVIETSTLERLIDKGKATYQDINNYRNIVELTETHRTASFVEKFANFFKMLWLRLKAMKHYKALNKESKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRAQRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYNEIVLSLQSKH
>NZ_CP041037.1|WP_001064816.1|372647_374411_+|ABC-transporter-ATP-binding-protein
MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVFKIILMMINNAYTINSIMVYIFIALIAYISQVCCFGASTMLSHITAYEILSEIRKKLAQKLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLIDWRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQSQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLNYAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEVNQILSLEELVLSTKFKKPQHYEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFTAIVGASGSGKSTIAKLISRYWDVTSGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAKLAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATAYVDPDNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGNYKKMWDTHMHTKDWGINTGHN
>NZ_CP041037.1|WP_000486494.1|374435_376169_+|ABC-transporter-ATP-binding-protein
MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDVVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL
>NZ_CP041037.1|WP_001217917.1|376619_377306_+|dethiobiotin-synthase
MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSYIEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
>NZ_CP041037.1|WP_001838076.1|377283_378642_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRIGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRNCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>NZ_CP041037.1|WP_001046645.1|378643_379651_+|biotin-synthase-BioB
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>NZ_CP041037.1|WP_145326002.1|379628_380744_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MMFQEQIDLLQQKGLYRSFKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLEKYPNQNIPKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGIDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>NZ_CP041037.1|WP_000286881.1|380754_381447_+|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLSDIKPVNTRYGGRIIFVDDCIDLNHYISFLESIPKQVVYETV
>NZ_CP041037.1|WP_000200945.1|381457_381925_+|QueT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSLLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>NZ_CP041037.1|WP_000783428.1|381976_382954_-|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>NZ_CP041037.1|WP_000916704.1|382955_383903_-|bi-component-gamma-hemolysin-HlgCB-subunit-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN

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Crispr_ID: NZ_CP041037_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_3

536087-536237

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041037_3

>merge|NZ_CP041037|3|536087-536237|PILER-CR
CAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAACGGGGCCCCAACACAGAAGGTGACGAAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAA

>NZ_CP041037|3|2|536087-536237|PILER-CR
CAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAAT	TCTACAGACAATGCAAG
TTGGGGAACGGGGCCCCAACACAGAAGGTGACGAAAAGTCAG	CATACAATAATGTGCAAGTTGGCGGGGCC
CCAACATAGAGAATTTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_000913019.1\|528979_529585_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226628
NZ_CP041037.1\|WP_000259732.1\|531854_533114_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP041037.1\|WP_000951058.1\|538233_538674_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP041037.1\|WP_000184404.1\|537029_538241_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP041037.1\|WP_000066900.1\|536577_536928_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
NZ_CP041037.1\|WP_000808500.1\|533609_534056_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP041037.1\|WP_000600967.1\|538835_539600_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP041037.1\|WP_000076927.1\|529754_530759_+\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
NZ_CP041037.1\|WP_000503820.1\|530789_531296_+\|molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|223595
NZ_CP041037.1\|WP_000643988.1\|534301_534901_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP041037.1\|WP_000230173.1\|534920_535943_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|274250
NZ_CP041037.1\|WP_001789125.1\|536266_536452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000134527.1\|531297_531792_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP041037.1\|WP_000866971.1\|534061_534295_+\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|340452
NZ_CP041037.1\|WP_000413863.1\|540232_541498_+\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
NZ_CP041037.1\|WP_000592317.1\|541614_544782_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP041037.1\|WP_000139184.1\|545827_546736_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP041037.1\|WP_001161085.1\|544968_545286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000051210.1\|545530_545695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000602945.1\|533110_533596_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_000913019.1\|528979_529585_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.32197e-115
NZ_CP041037.1\|WP_000259732.1\|531854_533114_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	8.63184e-158
NZ_CP041037.1\|WP_000951058.1\|538233_538674_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
NZ_CP041037.1\|WP_000184404.1\|537029_538241_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.92881e-73
NZ_CP041037.1\|WP_000134527.1\|531297_531792_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	1.34747e-97
NZ_CP041037.1\|WP_000808500.1\|533609_534056_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
NZ_CP041037.1\|WP_000600967.1\|538835_539600_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
NZ_CP041037.1\|WP_000076927.1\|529754_530759_+\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	5.26357e-132
NZ_CP041037.1\|WP_000503820.1\|530789_531296_+\|molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	9.7838e-65
NZ_CP041037.1\|WP_000643988.1\|534301_534901_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
NZ_CP041037.1\|WP_000230173.1\|534920_535943_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
NZ_CP041037.1\|WP_000066900.1\|536577_536928_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
NZ_CP041037.1\|WP_000866971.1\|534061_534295_+\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
NZ_CP041037.1\|WP_000413863.1\|540232_541498_+\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	3.69463e-143
NZ_CP041037.1\|WP_000592317.1\|541614_544782_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP041037.1\|WP_000139184.1\|545827_546736_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.99523e-42
NZ_CP041037.1\|WP_000602945.1\|533110_533596_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	5.581e-50

>NZ_CP041037.1|WP_000230173.1|534920_535943_+|GTP-3',8-cyclase-MoaA
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>NZ_CP041037.1|WP_000643988.1|534301_534901_+|molybdenum-cofactor-guanylyltransferase-MobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>NZ_CP041037.1|WP_000866971.1|534061_534295_+|molybdopterin-converting-factor-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>NZ_CP041037.1|WP_000808500.1|533609_534056_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>NZ_CP041037.1|WP_000602945.1|533110_533596_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDVQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>NZ_CP041037.1|WP_000259732.1|531854_533114_+|molybdopterin-molybdotransferase-MoeA
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDQIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>NZ_CP041037.1|WP_000134527.1|531297_531792_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSNQ
>NZ_CP041037.1|WP_000503820.1|530789_531296_+|molybdenum-cofactor-biosynthesis-protein-MoaB
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>NZ_CP041037.1|WP_000076927.1|529754_530759_+|molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>NZ_CP041037.1|WP_000913019.1|528979_529585_+|ATP-binding-cassette-domain-containing-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>NZ_CP041037.1|WP_001789125.1|536266_536452_-|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNDLECDNNVKEPLKIYYVVIFGSGTEITFSQNLFR
>NZ_CP041037.1|WP_000066900.1|536577_536928_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>NZ_CP041037.1|WP_000184404.1|537029_538241_-|MFS-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>NZ_CP041037.1|WP_000951058.1|538233_538674_-|winged-helix-DNA-binding-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>NZ_CP041037.1|WP_000600967.1|538835_539600_+|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>NZ_CP041037.1|WP_000413863.1|540232_541498_+|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>NZ_CP041037.1|WP_000592317.1|541614_544782_+|efflux-RND-transporter-permease-subunit
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVVTIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKVAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>NZ_CP041037.1|WP_001161085.1|544968_545286_-|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>NZ_CP041037.1|WP_000051210.1|545530_545695_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>NZ_CP041037.1|WP_000139184.1|545827_546736_+|AEC-family-transporter
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVYVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIVLYVYQAVFV

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Crispr_ID: NZ_CP041037_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_4

647310-647400

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP041037_4

>merge|NZ_CP041037|4|647310-647400|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCATAAGAGCCCCTAACAACTAAAGTTG

>NZ_CP041037|4|2|647310-647400|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCA
TAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_000495682.1\|647416_648508_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_001127960.1\|651328_652267_+\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP041037.1\|WP_000808817.1\|652297_652528_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000123402.1\|653199_654573_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP041037.1\|WP_001792784.1\|646032_646191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_001024095.1\|650227_650893_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP041037.1\|WP_000019744.1\|648773_649754_-\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP041037.1\|WP_001123312.1\|655029_655443_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP041037.1\|WP_000003759.1\|649755_650076_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP041037.1\|WP_001792291.1\|646255_646438_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_001802298.1\|646870_646975_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000370925.1\|644517_645375_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP041037.1\|WP_001838037.1\|639411_640950_-\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP041037.1\|WP_000908175.1\|643667_644450_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP041037.1\|WP_000070866.1\|655642_656086_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP041037.1\|WP_001794441.1\|645504_645597_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000160304.1\|656206_656917_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP041037.1\|WP_000927337.1\|637244_639377_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP041037.1\|WP_000334474.1\|641630_643436_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP041037.1\|WP_072400008.1\|640965_641181_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_001127960.1\|651328_652267_+\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_CP041037.1\|WP_000070866.1\|655642_656086_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NZ_CP041037.1\|WP_001024095.1\|650227_650893_+\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
NZ_CP041037.1\|WP_000019744.1\|648773_649754_-\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
NZ_CP041037.1\|WP_001123312.1\|655029_655443_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	2.33794e-45
NZ_CP041037.1\|WP_000003759.1\|649755_650076_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_CP041037.1\|WP_000123402.1\|653199_654573_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NZ_CP041037.1\|WP_000370925.1\|644517_645375_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
NZ_CP041037.1\|WP_001838037.1\|639411_640950_-\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP041037.1\|WP_000908175.1\|643667_644450_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	2.10326e-104
NZ_CP041037.1\|WP_000927337.1\|637244_639377_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	7.31154e-68
NZ_CP041037.1\|WP_000160304.1\|656206_656917_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_CP041037.1\|WP_000334474.1\|641630_643436_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

>NZ_CP041037.1|WP_001802298.1|646870_646975_+|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_CP041037.1|WP_001792291.1|646255_646438_+|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>NZ_CP041037.1|WP_001792784.1|646032_646191_-|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_CP041037.1|WP_001794441.1|645504_645597_-|hypothetical-protein
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>NZ_CP041037.1|WP_000370925.1|644517_645375_+|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_CP041037.1|WP_000908175.1|643667_644450_+|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKIPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP041037.1|WP_000334474.1|641630_643436_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNEDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP041037.1|WP_072400008.1|640965_641181_-|hypothetical-protein
MYNGVVLFCKYFHNKILKILKQFFCFTFSKYLYCHIDDTLFNFVTFILTKLIFVYIESQVTSLYTIYSHIY
>NZ_CP041037.1|WP_001838037.1|639411_640950_-|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWFPNKDLATLAVPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPKTPQGFEMLFNNFSAGILGFIMTIAGFKILAPIMKFIMHILSVAVESLVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDNPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP041037.1|WP_000927337.1|637244_639377_-|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSNLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLILPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP041037.1|WP_000495682.1|647416_648508_-|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP041037.1|WP_000019744.1|648773_649754_-|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>NZ_CP041037.1|WP_000003759.1|649755_650076_-|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP041037.1|WP_001024095.1|650227_650893_+|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>NZ_CP041037.1|WP_001127960.1|651328_652267_+|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP041037.1|WP_000808817.1|652297_652528_+|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP041037.1|WP_000123402.1|653199_654573_+|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP041037.1|WP_001123312.1|655029_655443_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHELPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP041037.1|WP_000070866.1|655642_656086_+|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP041037.1|WP_000160304.1|656206_656917_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: NZ_CP041037_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_5

1180869-1180956

Orphan

Consensus_repeat	Method
TGGGGCCCCAACACAGAAGCTGACGAAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041037_5

>merge|NZ_CP041037|5|1180869-1180956|CRISPRCasFinder
TGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAAGCTGACGAAAAG

>NZ_CP041037|5|3|1180869-1180956|CRISPRCasFinder
TGGGGCCCCAACACAGAAGCTGACGAAAAG	TCAGCTTACTATAATGTGCAAGTTGGGG
TGGGGCCCCAACATAGAAGCTGACGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_001282561.1\|1177291_1178266_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_CP041037.1\|WP_001088020.1\|1172703_1173057_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP041037.1\|WP_000368345.1\|1178907_1180731_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP041037.1\|WP_000627147.1\|1182517_1183495_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
NZ_CP041037.1\|WP_000725168.1\|1171559_1172129_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
NZ_CP041037.1\|WP_000182215.1\|1183526_1184153_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
NZ_CP041037.1\|WP_001104611.1\|1187332_1188271_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP041037.1\|WP_000108667.1\|1189031_1190378_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NZ_CP041037.1\|WP_001019322.1\|1172118_1172703_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_CP041037.1\|WP_000439691.1\|1174593_1175055_+\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
NZ_CP041037.1\|WP_000084829.1\|1173059_1173776_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP041037.1\|WP_001802667.1\|1191090_1191774_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223961
NZ_CP041037.1\|WP_001274017.1\|1178310_1178562_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP041037.1\|WP_001190118.1\|1188272_1189025_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NZ_CP041037.1\|WP_001837962.1\|1173815_1174502_+\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NZ_CP041037.1\|WP_000218105.1\|1181293_1182418_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP041037.1\|WP_000955235.1\|1171266_1171557_+\|ribosome-assembly-RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|224451
NZ_CP041037.1\|WP_001119021.1\|1186189_1187329_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
NZ_CP041037.1\|WP_000034716.1\|1184221_1186054_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP041037.1\|WP_000048060.1\|1190670_1190847_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_001282561.1\|1177291_1178266_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	6.05459e-103
NZ_CP041037.1\|WP_001088020.1\|1172703_1173057_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
NZ_CP041037.1\|WP_000368345.1\|1178907_1180731_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP041037.1\|WP_000627147.1\|1182517_1183495_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.41755e-119
NZ_CP041037.1\|WP_000725168.1\|1171559_1172129_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	7.70837e-76
NZ_CP041037.1\|WP_000182215.1\|1183526_1184153_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	4.88508e-81
NZ_CP041037.1\|WP_001104611.1\|1187332_1188271_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	7.92225e-134
NZ_CP041037.1\|WP_000108667.1\|1189031_1190378_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_CP041037.1\|WP_001019322.1\|1172118_1172703_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	7.31407e-81
NZ_CP041037.1\|WP_000439691.1\|1174593_1175055_+\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	2.8334e-101
NZ_CP041037.1\|WP_000084829.1\|1173059_1173776_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.9222e-16
NZ_CP041037.1\|WP_001802667.1\|1191090_1191774_+\|hypothetical-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
NZ_CP041037.1\|WP_001274017.1\|1178310_1178562_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
NZ_CP041037.1\|WP_001190118.1\|1188272_1189025_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.33219e-91
NZ_CP041037.1\|WP_001837962.1\|1173815_1174502_+\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	4.0369e-33
NZ_CP041037.1\|WP_000218105.1\|1181293_1182418_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP041037.1\|WP_000955235.1\|1171266_1171557_+\|ribosome-assembly-RNA-binding-protein-YhbY	gnl\|CDD\|224451	COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis].	1.68466e-44
NZ_CP041037.1\|WP_001119021.1\|1186189_1187329_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
NZ_CP041037.1\|WP_000034716.1\|1184221_1186054_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP041037.1\|WP_000048060.1\|1190670_1190847_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10

>NZ_CP041037.1|WP_000368345.1|1178907_1180731_+|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELMPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>NZ_CP041037.1|WP_001274017.1|1178310_1178562_-|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>NZ_CP041037.1|WP_001282561.1|1177291_1178266_+|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSHEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>NZ_CP041037.1|WP_000439691.1|1174593_1175055_+|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFLPEYVAKYLTKG
>NZ_CP041037.1|WP_001837962.1|1173815_1174502_+|ComEA-family-DNA-binding-protein
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>NZ_CP041037.1|WP_000084829.1|1173059_1173776_+|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>NZ_CP041037.1|WP_001088020.1|1172703_1173057_+|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>NZ_CP041037.1|WP_001019322.1|1172118_1172703_+|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKAELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>NZ_CP041037.1|WP_000725168.1|1171559_1172129_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKYNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
>NZ_CP041037.1|WP_000955235.1|1171266_1171557_+|ribosome-assembly-RNA-binding-protein-YhbY
MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYRESKENKEIELP
>NZ_CP041037.1|WP_000218105.1|1181293_1182418_+|oxygen-independent-coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDVIALTNRGKVIGNEVFEAFLIND
>NZ_CP041037.1|WP_000627147.1|1182517_1183495_+|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>NZ_CP041037.1|WP_000182215.1|1183526_1184153_+|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNVKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>NZ_CP041037.1|WP_000034716.1|1184221_1186054_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>NZ_CP041037.1|WP_001119021.1|1186189_1187329_+|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>NZ_CP041037.1|WP_001104611.1|1187332_1188271_+|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNVQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>NZ_CP041037.1|WP_001190118.1|1188272_1189025_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>NZ_CP041037.1|WP_000108667.1|1189031_1190378_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>NZ_CP041037.1|WP_000048060.1|1190670_1190847_+|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>NZ_CP041037.1|WP_001802667.1|1191090_1191774_+|hypothetical-protein
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD

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Crispr_ID: NZ_CP041037_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_6

1583291-1583380

Unclear

Consensus_repeat	Method
TGAGCTTTAGCTCAGGCGTTCCTCTA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP041037_6

>merge|NZ_CP041037|6|1583291-1583380|CRISPRCasFinder
TGAGCTTTAGCTCAGGCGTTCCTCTATCCCAGTTATCAATTTATTGATTACTGCGTCTTTATCTTGAGCTTTAGCTCAAGCGTTCCTCTA

>NZ_CP041037|6|4|1583291-1583380|CRISPRCasFinder
TGAGCTTTAGCTCAGGCGTTCCTCTA	TCCCAGTTATCAATTTATTGATTACTGCGTCTTTATCT
TGAGCTTTAGCTCAAGCGTTCCTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_000181404.1\|1572913_1573264_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP041037.1\|WP_000167263.1\|1583601_1584336_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_CP041037.1\|WP_000426914.1\|1582933_1583167_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP041037.1\|WP_000531320.1\|1576804_1577137_-\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP041037.1\|WP_000043237.1\|1582086_1582818_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP041037.1\|WP_001548538.1\|1586238_1586811_-\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_CP041037.1\|WP_000047343.1\|1584328_1585255_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP041037.1\|WP_000623903.1\|1589263_1590910_-\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|224378
NZ_CP041037.1\|WP_000239748.1\|1585247_1586234_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP041037.1\|WP_000164332.1\|1592958_1593603_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP041037.1\|WP_000007679.1\|1577123_1578374_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP041037.1\|WP_000517908.1\|1591741_1591930_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP041037.1\|WP_145326112.1\|1574103_1574607_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP041037.1\|WP_145326114.1\|1578373_1581940_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP041037.1\|WP_000171418.1\|1590924_1591299_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_CP041037.1\|WP_001151509.1\|1587013_1589074_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP041037.1\|WP_000268754.1\|1574794_1575070_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_CP041037.1\|WP_000863474.1\|1575411_1576779_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP041037.1\|WP_000687328.1\|1573366_1574104_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP041037.1\|WP_000547905.1\|1592310_1592952_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_000181404.1\|1572913_1573264_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
NZ_CP041037.1\|WP_000167263.1\|1583601_1584336_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	1.87747e-140
NZ_CP041037.1\|WP_000426914.1\|1582933_1583167_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
NZ_CP041037.1\|WP_000531320.1\|1576804_1577137_-\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
NZ_CP041037.1\|WP_000043237.1\|1582086_1582818_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
NZ_CP041037.1\|WP_001548538.1\|1586238_1586811_-\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	2.37773e-98
NZ_CP041037.1\|WP_000047343.1\|1584328_1585255_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	2.53926e-134
NZ_CP041037.1\|WP_000623903.1\|1589263_1590910_-\|DAK2-domain-containing-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
NZ_CP041037.1\|WP_000239748.1\|1585247_1586234_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	6.1953e-178
NZ_CP041037.1\|WP_000164332.1\|1592958_1593603_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	1.52718e-114
NZ_CP041037.1\|WP_000007679.1\|1577123_1578374_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP041037.1\|WP_000517908.1\|1591741_1591930_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
NZ_CP041037.1\|WP_145326112.1\|1574103_1574607_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	6.34042e-68
NZ_CP041037.1\|WP_145326114.1\|1578373_1581940_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_CP041037.1\|WP_000171418.1\|1590924_1591299_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
NZ_CP041037.1\|WP_001151509.1\|1587013_1589074_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP041037.1\|WP_000268754.1\|1574794_1575070_-\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
NZ_CP041037.1\|WP_000863474.1\|1575411_1576779_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP041037.1\|WP_000687328.1\|1573366_1574104_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.98496e-164
NZ_CP041037.1\|WP_000547905.1\|1592310_1592952_-\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.16343e-81

>NZ_CP041037.1|WP_000426914.1|1582933_1583167_-|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>NZ_CP041037.1|WP_000043237.1|1582086_1582818_-|ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>NZ_CP041037.1|WP_145326114.1|1578373_1581940_-|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIVDLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVDPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQVQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLMELLENISNEISGAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRFTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQNQQTKHQLKDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEAKLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>NZ_CP041037.1|WP_000007679.1|1577123_1578374_-|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFATNKENEEVKSLREEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGSK
>NZ_CP041037.1|WP_000531320.1|1576804_1577137_-|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>NZ_CP041037.1|WP_000863474.1|1575411_1576779_-|signal-recognition-particle-protein
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>NZ_CP041037.1|WP_000268754.1|1574794_1575070_-|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>NZ_CP041037.1|WP_145326112.1|1574103_1574607_-|ribosome-maturation-factor-RimM
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKELHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>NZ_CP041037.1|WP_000687328.1|1573366_1574104_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>NZ_CP041037.1|WP_000181404.1|1572913_1573264_-|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>NZ_CP041037.1|WP_000167263.1|1583601_1584336_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MTKSALVTGASRGIGRSIALQLAEEGFNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_CP041037.1|WP_000047343.1|1584328_1585255_-|ACP-S-malonyltransferase
MSKTAIIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>NZ_CP041037.1|WP_000239748.1|1585247_1586234_-|phosphate-acyltransferase-PlsX
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYNLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKLAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>NZ_CP041037.1|WP_001548538.1|1586238_1586811_-|transcription-factor-FapR
MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
>NZ_CP041037.1|WP_001151509.1|1587013_1589074_-|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD
>NZ_CP041037.1|WP_000623903.1|1589263_1590910_-|DAK2-domain-containing-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAIEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKIDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLAEDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>NZ_CP041037.1|WP_000171418.1|1590924_1591299_-|Asp23/Gls24-family-envelope-stress-response-protein
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>NZ_CP041037.1|WP_000517908.1|1591741_1591930_+|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>NZ_CP041037.1|WP_000547905.1|1592310_1592952_-|thiamine-diphosphokinase
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>NZ_CP041037.1|WP_000164332.1|1592958_1593603_-|ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG

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Crispr_ID: NZ_CP041037_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_7

1656309-1656389

Orphan

Consensus_repeat	Method
CCAACTTGCATTGTCTGTAGAAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041037_7

>merge|NZ_CP041037|7|1656309-1656389|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCACTATGTTGGGGCCCCACCAACTTGCATTGTCTGTAGAATTT

>NZ_CP041037|7|5|1656309-1656389|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATT	GGGAATCCAATTTCACTATGTTGGGGCCCCA
CCAACTTGCATTGTCTGTAGAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_001032817.1\|1659864_1660050_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000398672.1\|1646315_1646450_-\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP041037.1\|WP_000041898.1\|1655360_1656077_+\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NZ_CP041037.1\|WP_000739582.1\|1663136_1663535_+\|formyl-peptide-receptor-like-1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
NZ_CP041037.1\|WP_000765708.1\|1656757_1656904_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_001074342.1\|1651313_1652246_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NZ_CP041037.1\|WP_001802045.1\|1656576_1656801_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_001063559.1\|1654527_1655253_+\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NZ_CP041037.1\|WP_001239285.1\|1647798_1648746_+\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP041037.1\|WP_001245802.1\|1647361_1647550_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
NZ_CP041037.1\|WP_001823392.1\|1649585_1651091_-\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP041037.1\|WP_000584397.1\|1661959_1662466_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000857483.1\|1657576_1658536_+\|beta-channel-forming-cytolysin	unknown	unknown	gnl\|CDD\|273388
NZ_CP041037.1\|WP_000739541.1\|1653707_1654433_+\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NZ_CP041037.1\|WP_000149423.1\|1649050_1649278_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_001789955.1\|1659409_1659658_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000669528.1\|1660702_1661053_-\|complement-inhibitor-SCIN-family-protein	unknown	unknown	gnl\|CDD\|371594
NZ_CP041037.1\|WP_000231631.1\|1659012_1659246_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000793605.1\|1652268_1653270_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
NZ_CP041037.1\|WP_000791588.1\|1661203_1661701_-\|complement-convertase-inhibitor-Efb	unknown	unknown	gnl\|CDD\|289007

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_000398672.1\|1646315_1646450_-\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
NZ_CP041037.1\|WP_000041898.1\|1655360_1656077_+\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.0861e-152
NZ_CP041037.1\|WP_000739582.1\|1663136_1663535_+\|formyl-peptide-receptor-like-1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	6.29479e-75
NZ_CP041037.1\|WP_001074342.1\|1651313_1652246_-\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
NZ_CP041037.1\|WP_001063559.1\|1654527_1655253_+\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148
NZ_CP041037.1\|WP_001239285.1\|1647798_1648746_+\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	7.44089e-84
NZ_CP041037.1\|WP_000669528.1\|1660702_1661053_-\|complement-inhibitor-SCIN-family-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	8.46865e-41
NZ_CP041037.1\|WP_001823392.1\|1649585_1651091_-\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP041037.1\|WP_000857483.1\|1657576_1658536_+\|beta-channel-forming-cytolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	4.27434e-141
NZ_CP041037.1\|WP_000739541.1\|1653707_1654433_+\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	1.59495e-161
NZ_CP041037.1\|WP_001245802.1\|1647361_1647550_-\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
NZ_CP041037.1\|WP_000793605.1\|1652268_1653270_-\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
NZ_CP041037.1\|WP_000791588.1\|1661203_1661701_-\|complement-convertase-inhibitor-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.91824e-27

>NZ_CP041037.1|WP_000041898.1|1655360_1656077_+|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKGRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NZ_CP041037.1|WP_001063559.1|1654527_1655253_+|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NZ_CP041037.1|WP_000739541.1|1653707_1654433_+|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHLSLSNKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKSN
>NZ_CP041037.1|WP_000793605.1|1652268_1653270_-|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>NZ_CP041037.1|WP_001074342.1|1651313_1652246_-|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>NZ_CP041037.1|WP_001823392.1|1649585_1651091_-|YfcC-family-protein
MPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>NZ_CP041037.1|WP_000149423.1|1649050_1649278_-|hypothetical-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>NZ_CP041037.1|WP_001239285.1|1647798_1648746_+|TDT-family-transporter
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>NZ_CP041037.1|WP_001245802.1|1647361_1647550_-|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>NZ_CP041037.1|WP_000398672.1|1646315_1646450_-|beta-class-phenol-soluble-modulin
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
>NZ_CP041037.1|WP_001802045.1|1656576_1656801_-|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>NZ_CP041037.1|WP_000765708.1|1656757_1656904_-|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NZ_CP041037.1|WP_000857483.1|1657576_1658536_+|beta-channel-forming-cytolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN
>NZ_CP041037.1|WP_000231631.1|1659012_1659246_+|hypothetical-protein
MVFNDWEINVVYSGEHEVVANEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>NZ_CP041037.1|WP_001789955.1|1659409_1659658_+|hypothetical-protein
MYNIIVYIACMINFGLIIVPLLTTNDADFVWTSSSLIYMILLTSIILIVYIKTKDSLQLTIFILNIALIILYCAPLLFIYVF
>NZ_CP041037.1|WP_001032817.1|1659864_1660050_+|hypothetical-protein
MNKHINKKATKLLEDYKKVQQRKSEETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NZ_CP041037.1|WP_000669528.1|1660702_1661053_-|complement-inhibitor-SCIN-family-protein
MKFKKYILTGTLALLLSSTAIATIEGNKADASSKKDYIIQSEFHDKRIAEELKSLLDQSYVNDLAAGSLNPYYKRTIMMNQYRAKAALKSNNFAKMAEAKVALENIYKEIDEIINR
>NZ_CP041037.1|WP_000791588.1|1661203_1661701_-|complement-convertase-inhibitor-Efb
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
>NZ_CP041037.1|WP_000584397.1|1661959_1662466_-|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLFFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NZ_CP041037.1|WP_000739582.1|1663136_1663535_+|formyl-peptide-receptor-like-1-inhibitory-protein
MKKNITKVIIASTVIATGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERADKLIKEADEKNEHYKGKTVEDLYVIAKKMGKGNTIAVVKIKDGGKNGYYTFDITRPLEEHRKNIPVVKNGEIDSITWY

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Crispr_ID: NZ_CP041037_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_8

1914803-1914881

Orphan

Consensus_repeat	Method
TATTGTAAGCTGACTTTCCGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041037_8

>merge|NZ_CP041037|8|1914803-1914881|CRISPRCasFinder
TATTGTAAGCTGACTTTCCGCCAGCCTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCA

>NZ_CP041037|8|6|1914803-1914881|CRISPRCasFinder
TATTGTAAGCTGACTTTCCGCCA	GCCTCTGTGTTGGGGCCCCGCCAACTTGCACAT
TATTGTAAGCTGACTTTCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_000154929.1\|1899837_1903491_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP041037.1\|WP_000138487.1\|1915027_1916272_-\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP041037.1\|WP_001067294.1\|1919367_1919745_-\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023
NZ_CP041037.1\|WP_000148852.1\|1909147_1910479_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP041037.1\|WP_000660040.1\|1910829_1912035_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP041037.1\|WP_000167314.1\|1916380_1917571_-\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_CP041037.1\|WP_000758209.1\|1907718_1908243_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP041037.1\|WP_000838031.1\|1917878_1919006_-\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_CP041037.1\|WP_000670752.1\|1898769_1899672_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP041037.1\|WP_001837874.1\|1903491_1906968_-\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP041037.1\|WP_145326155.1\|1921331_1923737_+\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
NZ_CP041037.1\|WP_072384859.1\|1924169_1924499_+\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
NZ_CP041037.1\|WP_145326153.1\|1912024_1913404_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP041037.1\|WP_001081626.1\|1923729_1924158_+\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
NZ_CP041037.1\|WP_000573077.1\|1924491_1925988_+\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
NZ_CP041037.1\|WP_000781162.1\|1920817_1921201_+\|kinase	unknown	unknown	gnl\|CDD\|378054
NZ_CP041037.1\|WP_000711896.1\|1907127_1907703_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP041037.1\|WP_000035058.1\|1920160_1920754_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238908
NZ_CP041037.1\|WP_000007967.1\|1908247_1908823_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP041037.1\|WP_000185319.1\|1913645_1914575_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_000154929.1\|1899837_1903491_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041037.1\|WP_000138487.1\|1915027_1916272_-\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP041037.1\|WP_001067294.1\|1919367_1919745_-\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
NZ_CP041037.1\|WP_000148852.1\|1909147_1910479_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP041037.1\|WP_000660040.1\|1910829_1912035_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP041037.1\|WP_000167314.1\|1916380_1917571_-\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_CP041037.1\|WP_000758209.1\|1907718_1908243_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.81012e-49
NZ_CP041037.1\|WP_000838031.1\|1917878_1919006_-\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP041037.1\|WP_000670752.1\|1898769_1899672_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.0042e-87
NZ_CP041037.1\|WP_001837874.1\|1903491_1906968_-\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041037.1\|WP_145326155.1\|1921331_1923737_+\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP041037.1\|WP_072384859.1\|1924169_1924499_+\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.61295e-61
NZ_CP041037.1\|WP_145326153.1\|1912024_1913404_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP041037.1\|WP_001081626.1\|1923729_1924158_+\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
NZ_CP041037.1\|WP_000573077.1\|1924491_1925988_+\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP041037.1\|WP_000781162.1\|1920817_1921201_+\|kinase	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	8.96507e-53
NZ_CP041037.1\|WP_000711896.1\|1907127_1907703_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	7.44791e-54
NZ_CP041037.1\|WP_000035058.1\|1920160_1920754_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
NZ_CP041037.1\|WP_000007967.1\|1908247_1908823_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.01759e-40
NZ_CP041037.1\|WP_000185319.1\|1913645_1914575_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	5.11302e-151

>NZ_CP041037.1|WP_000185319.1|1913645_1914575_+|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>NZ_CP041037.1|WP_145326153.1|1912024_1913404_+|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQAQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>NZ_CP041037.1|WP_000660040.1|1910829_1912035_+|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDAADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>NZ_CP041037.1|WP_000148852.1|1909147_1910479_-|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEDNIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>NZ_CP041037.1|WP_000007967.1|1908247_1908823_-|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>NZ_CP041037.1|WP_000758209.1|1907718_1908243_-|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDHDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>NZ_CP041037.1|WP_000711896.1|1907127_1907703_-|signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>NZ_CP041037.1|WP_001837874.1|1903491_1906968_-|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFNQLYRFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDETMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>NZ_CP041037.1|WP_000154929.1|1899837_1903491_-|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>NZ_CP041037.1|WP_000670752.1|1898769_1899672_-|fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK
>NZ_CP041037.1|WP_000138487.1|1915027_1916272_-|Glu/Leu/Phe/Val-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>NZ_CP041037.1|WP_000167314.1|1916380_1917571_-|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>NZ_CP041037.1|WP_000838031.1|1917878_1919006_-|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>NZ_CP041037.1|WP_001067294.1|1919367_1919745_-|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>NZ_CP041037.1|WP_000035058.1|1920160_1920754_-|peptidyl-prolyl-cis-trans-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>NZ_CP041037.1|WP_000781162.1|1920817_1921201_+|kinase
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHERKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>NZ_CP041037.1|WP_145326155.1|1921331_1923737_+|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILAILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>NZ_CP041037.1|WP_001081626.1|1923729_1924158_+|Na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>NZ_CP041037.1|WP_072384859.1|1924169_1924499_+|Na(+)/H(+)-antiporter-subunit-C
MIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVECMKGVPEDD
>NZ_CP041037.1|WP_000573077.1|1924491_1925988_+|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK

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Crispr_ID: NZ_CP041037_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_9

2430024-2430126

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041037_9

>merge|NZ_CP041037|9|2430024-2430126|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>NZ_CP041037|9|7|2430024-2430126|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_031775138.1\|2437262_2437541_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000956132.1\|2429050_2430007_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP041037.1\|WP_000424963.1\|2422291_2423833_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP041037.1\|WP_000052781.1\|2433698_2434268_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NZ_CP041037.1\|WP_000158375.1\|2438944_2439526_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP041037.1\|WP_000361527.1\|2420615_2421722_-\|Abi-family-protein	unknown	unknown	gnl\|CDD\|377910
NZ_CP041037.1\|WP_000421410.1\|2426629_2427208_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP041037.1\|WP_000264071.1\|2423857_2425324_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP041037.1\|WP_000704945.1\|2419096_2419576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000991008.1\|2430983_2432372_+\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP041037.1\|WP_000746679.1\|2437613_2438240_+\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
NZ_CP041037.1\|WP_001802787.1\|2430333_2430591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000888759.1\|2419597_2419990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000394698.1\|2428270_2428933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000930489.1\|2434283_2435807_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NZ_CP041037.1\|WP_001789518.1\|2430797_2430899_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000868243.1\|2438495_2438879_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000793023.1\|2425361_2426630_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP041037.1\|WP_000763768.1\|2427720_2428128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP041037.1\|WP_001279730.1\|2432451_2433207_-\|oxygen-insensitive-NADPH-nitroreductase	unknown	unknown	gnl\|CDD\|380322

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_000956132.1\|2429050_2430007_+\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
NZ_CP041037.1\|WP_000424963.1\|2422291_2423833_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP041037.1\|WP_000052781.1\|2433698_2434268_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
NZ_CP041037.1\|WP_000158375.1\|2438944_2439526_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
NZ_CP041037.1\|WP_000361527.1\|2420615_2421722_-\|Abi-family-protein	gnl\|CDD\|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	2.0112e-23
NZ_CP041037.1\|WP_000421410.1\|2426629_2427208_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
NZ_CP041037.1\|WP_000264071.1\|2423857_2425324_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP041037.1\|WP_000991008.1\|2430983_2432372_+\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP041037.1\|WP_000746679.1\|2437613_2438240_+\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
NZ_CP041037.1\|WP_000930489.1\|2434283_2435807_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NZ_CP041037.1\|WP_000793023.1\|2425361_2426630_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
NZ_CP041037.1\|WP_000763768.1\|2427720_2428128_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
NZ_CP041037.1\|WP_001279730.1\|2432451_2433207_-\|oxygen-insensitive-NADPH-nitroreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.05628e-88

>NZ_CP041037.1|WP_000956132.1|2429050_2430007_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>NZ_CP041037.1|WP_000394698.1|2428270_2428933_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>NZ_CP041037.1|WP_000763768.1|2427720_2428128_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>NZ_CP041037.1|WP_000421410.1|2426629_2427208_-|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>NZ_CP041037.1|WP_000793023.1|2425361_2426630_-|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>NZ_CP041037.1|WP_000264071.1|2423857_2425324_-|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>NZ_CP041037.1|WP_000424963.1|2422291_2423833_-|glutamine-hydrolyzing-GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>NZ_CP041037.1|WP_000361527.1|2420615_2421722_-|Abi-family-protein
MDKSLEINLKELESIMYKEKVIDVKEYDNLKVTFETLNDAPKSEIPTPFTIEQMLYKLETKNLYFPEIKSKEKCVELLHSVGYYNLKHFMYNEFGKDEPKNFDEVYILYKFDRYLLKQLFSLVNMLETHIRNIILEVYMLEIEYNNKPSTLFYLDKDLYFEKVNDEYKYSAKKLKEFNRLQNVFWRAIEKKKSNDNVKHNIKKYNIIPAWVLFQNFSFGDLSTFYRTTLPTYRNKVSKRIENLIEKNTGISIKLPEKLLCAWLNSIRFLRNRIAHTDIIYGINFTNTCAKHHSDEEMYVNIEKYKYQQRLVTFLLAMKKIFMSMPENNIIEWNETLTKIENKCSEHNFIKLSRLGVIENNLSYFKITK
>NZ_CP041037.1|WP_000888759.1|2419597_2419990_+|hypothetical-protein
MLEDNGDIRLLYQSIEELASVLGQSQFETKTVSLIFVQMDLRYSVFEKVQTDFMKYLAHKNSDEIKYIDLIKIIENALPEDKELSINVINSIIIGFSNNYYPILQSLVPEIQSSYGITINKNFNIDSIDF
>NZ_CP041037.1|WP_000704945.1|2419096_2419576_+|hypothetical-protein
MKITKAIGSLVLTAVLLTSVSPLINANEIQTNNTKTAHQSYENINGVKINRNPNLPMNPEAQQRIGGTKVVKTAIKLIINNRGKAKNVIQQVGGKKAATIFDKGYSGIVKELKPLLKWSEVPANAVSDAVKRGAINAGLSKSDAGIISTVVKEAIAWLF
>NZ_CP041037.1|WP_001802787.1|2430333_2430591_+|hypothetical-protein
MLVTDESHKCTLIFTFTTNAFLLKQKYLFTVAFELPPAHTNTQKMLILIRQNFLQRVCSKRLFKVDHLLSFHSINMRLAIFIKPP
>NZ_CP041037.1|WP_001789518.1|2430797_2430899_-|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNSVVIGGKGK
>NZ_CP041037.1|WP_000991008.1|2430983_2432372_+|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>NZ_CP041037.1|WP_001279730.1|2432451_2433207_-|oxygen-insensitive-NADPH-nitroreductase
MSDHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYNQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>NZ_CP041037.1|WP_000052781.1|2433698_2434268_+|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>NZ_CP041037.1|WP_000930489.1|2434283_2435807_+|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>NZ_CP041037.1|WP_031775138.1|2437262_2437541_+|hypothetical-protein
MKSDQAIKEFTSYLRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLVQPIMQLFIDNAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>NZ_CP041037.1|WP_000746679.1|2437613_2438240_+|NDxxF-motif-lipoprotein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>NZ_CP041037.1|WP_000868243.1|2438495_2438879_+|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSFTQFTPFTLASFITSIILFVSAIITLAIGGKSLDKNDFH
>NZ_CP041037.1|WP_000158375.1|2438944_2439526_-|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE

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Crispr_ID: NZ_CP041037_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041037_10

2547319-2547452

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP041037_10

>merge|NZ_CP041037|10|2547319-2547452|CRISPRCasFinder
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGCCCGCCAATATAACA

>NZ_CP041037|10|8|2547319-2547452|CRISPRCasFinder
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTCCGCCAGCTTCTA
TGTTGGGGCCCCGCCAACTTGCA	TTACCTGTAGAATTTCTTTTCGAAATTCTTTG
TGTTGGGGCCCGCCAATATAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041037.1\|WP_000066934.1\|2548968_2549760_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225101
NZ_CP041037.1\|WP_031867553.1\|2546086_2546221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000163981.1\|2547516_2548953_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NZ_CP041037.1\|WP_000757880.1\|2542516_2543515_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP041037.1\|WP_000975352.1\|2555530_2557252_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|376098
NZ_CP041037.1\|WP_000029204.1\|2543746_2544628_+\|ribose-transporter-RbsU	unknown	unknown	gnl\|CDD\|284268
NZ_CP041037.1\|WP_001792906.1\|2551414_2551858_-\|antiholin-like-murein-hydrolase-modulator-LrgA	unknown	unknown	gnl\|CDD\|235222
NZ_CP041037.1\|WP_000182739.1\|2545074_2545989_+\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NZ_CP041037.1\|WP_115391179.1\|2552713_2554453_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP041037.1\|WP_000031256.1\|2546239_2547001_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP041037.1\|WP_001159764.1\|2541743_2542136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041037.1\|WP_000750483.1\|2544642_2545047_+\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_CP041037.1\|WP_000645452.1\|2551970_2552711_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|184495
NZ_CP041037.1\|WP_001066553.1\|2539695_2541072_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP041037.1\|WP_000922332.1\|2549908_2550613_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP041037.1\|WP_000240915.1\|2557284_2558973_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP041037.1\|WP_000736795.1\|2537193_2538144_-\|glycine-glycine-endopeptidase-LytM	unknown	unknown	gnl\|CDD\|366703
NZ_CP041037.1\|WP_000607067.1\|2550720_2551422_-\|antiholin-like-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
NZ_CP041037.1\|WP_000337363.1\|2538469_2539462_-\|linear-amide-C-N-hydrolase	unknown	unknown	gnl\|CDD\|225591
NZ_CP041037.1\|WP_000608821.1\|2554712_2555387_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	unknown	unknown	gnl\|CDD\|183940

Protein	Function_ID	Function_description	E-value
NZ_CP041037.1\|WP_000066934.1\|2548968_2549760_-\|hypothetical-protein	gnl\|CDD\|225101	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism].	1.50541e-54
NZ_CP041037.1\|WP_000163981.1\|2547516_2548953_-\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP041037.1\|WP_000757880.1\|2542516_2543515_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.51896e-100
NZ_CP041037.1\|WP_000975352.1\|2555530_2557252_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	5.42142e-35
NZ_CP041037.1\|WP_000029204.1\|2543746_2544628_+\|ribose-transporter-RbsU	gnl\|CDD\|284268	pfam06800, Sugar_transport, Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes. These members are transmembrane proteins which are usually 5+5 duplications. This model recognizes a set of five TMs,.	4.46997e-117
NZ_CP041037.1\|WP_001792906.1\|2551414_2551858_-\|antiholin-like-murein-hydrolase-modulator-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	8.44339e-64
NZ_CP041037.1\|WP_000182739.1\|2545074_2545989_+\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	8.79195e-143
NZ_CP041037.1\|WP_115391179.1\|2552713_2554453_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP041037.1\|WP_000031256.1\|2546239_2547001_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.0775e-27
NZ_CP041037.1\|WP_000750483.1\|2544642_2545047_+\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	4.08879e-70
NZ_CP041037.1\|WP_000645452.1\|2551970_2552711_-\|DNA-binding-response-regulator	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	2.42934e-152
NZ_CP041037.1\|WP_001066553.1\|2539695_2541072_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.58117e-30
NZ_CP041037.1\|WP_000922332.1\|2549908_2550613_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.3822e-62
NZ_CP041037.1\|WP_000240915.1\|2557284_2558973_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.2487e-119
NZ_CP041037.1\|WP_000736795.1\|2537193_2538144_-\|glycine-glycine-endopeptidase-LytM	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	6.32575e-32
NZ_CP041037.1\|WP_000607067.1\|2550720_2551422_-\|antiholin-like-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
NZ_CP041037.1\|WP_000337363.1\|2538469_2539462_-\|linear-amide-C-N-hydrolase	gnl\|CDD\|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	1.85342e-148
NZ_CP041037.1\|WP_000608821.1\|2554712_2555387_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	7.16104e-153

>NZ_CP041037.1|WP_000031256.1|2546239_2547001_+|class-I-SAM-dependent-methyltransferase
MSKEAGHTFLAKLGKTRLRPGGKAATDWLIQQGAFSQDKKVLEVACNMCTTSIYLAHTYGCHIQGVDINKKALEKAQENISAAGLESYIQVQQANAVKLPFDDNQFDIVLNEAMLTMLPIAIKEKALREYYRVLKPGGILLTHDIVIVNESHATHVVKSLSAAINVNVSPQTKLGWLDLYNQAGFNHVHYHTGPMSLMTPKGLIYDEGIVGTIKIINNALKKENRPMFCKMFKTMTKLRKDMNYITFVAKKEH
>NZ_CP041037.1|WP_031867553.1|2546086_2546221_-|hypothetical-protein
MIIIIINIAYLYAIIWKLERLQKIVTSFITKHESSSIGLVENYF
>NZ_CP041037.1|WP_000182739.1|2545074_2545989_+|ribokinase
MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKAAHIDTSYIIKSTEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSLGIKTVLITLGKQGTYFATKNQSQHIEAYKVNVIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQV
>NZ_CP041037.1|WP_000750483.1|2544642_2545047_+|D-ribose-pyranase
MKKTAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>NZ_CP041037.1|WP_000029204.1|2543746_2544628_+|ribose-transporter-RbsU
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAIILAVVTSSGFPTGTNLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
>NZ_CP041037.1|WP_000757880.1|2542516_2543515_+|LacI-family-transcriptional-regulator
MKKVSIKDVAREAGVSVTTVSHILNHNDSRFSATTIKNVHAVSERLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSALMQSIHDHKPSDVDLCFLTSTATDLYDNIKHLIDRGIDGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTNEYQGGQLAAQHLIELGHNHMIIVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTELSKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAAYVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN
>NZ_CP041037.1|WP_001159764.1|2541743_2542136_-|hypothetical-protein
MQFKLKEEEIISFLELKYPEKEFEYGRLLVGQHKRDDLDVYYFGDTFLMCTIISFKTFEIKETVELSYDAVNRIVLKDGWLFRKMRIETMQKVLKYGTSKLMLTDFQKDNYNKYIQGQKQRVIFENGHFV
>NZ_CP041037.1|WP_001066553.1|2539695_2541072_+|MFS-transporter
MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTSPAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMFASLLLIISDITALLIIGRILQGLSAAILLPSTVGVLNNQFKGEHLRRAISYLMISTVGGIGLAGVIGGLIATNFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLTQGFEQGWFSTFSFICLSIFIITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVLNSGLGVTVVFFIYAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLIIGPLFPVIGITIISMTQLSASQYVIAVIIGFVICAIGNGLVATPGLTIAIFSMPNEKVGLATGLYKMSGTLGGAFGIALSTTVFSMLQLNYAPSVAATVTFIVSIVLMILGSLSAYMIIPKTVKS
>NZ_CP041037.1|WP_000337363.1|2538469_2539462_-|linear-amide-C-N-hydrolase
MCTGFTIQTLNNQVLLGRTMDYDYPLDGSPAVTPRNYRWKSRTGTTGQTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNEIVTWILGYTTSIEDMKQQASQIHVVAVYLNDIGEVPPLHYHVSDATGHTVEVSFKEGEVVIKDNPIGVLTNHPDLNWHYSNLRQYINISPYPATANLLEGVTIEPLGNEAGTFGLPGGFTSTERFVRMAFMKANIAQNNDKEMDLMNAFYLLDAVNIPIGIVRPHDADNHYTMYQTVINLTTRTLYIKYYGSNELVALKLTDDLINRKDMTIFKPEKHIIIRKLNDNQ
>NZ_CP041037.1|WP_000736795.1|2537193_2538144_-|glycine-glycine-endopeptidase-LytM
MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNSPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQSR
>NZ_CP041037.1|WP_000163981.1|2547516_2548953_-|6-phospho-beta-glucosidase
MTKLPQNFMWGGALAANQFEGGYDKGGKGLSVIDVMTSGAHGKARQITEFIDPNHYYPNHEGIDFYHRYKEDIALFKEMGLKCLRTSIAWTRIFPNGDEDVPNEEGLAFYDRIFDELIAQGIEPVVTLSHFEMPLHLAKHYGGFRNREVVDYFVHFARVVFERYKDKVTYWMTFNEINNQMDTSNPIFLWTNSGVALTENDNPEEVLYQVAHHELLASALAVRLGKEINPKFKIGTMISHVPIYPYSCHPKDMMEAQIANRLRFFFPDVQVRGYYPSYAKKMLARKGYDVGWQEGDDSILQQGTVDYIGFSYYMSTAVKHDVDTTVENNIVNGGLNHSVENPHIATSDWGWAIDPDGLRYTLNVLYDRYQLPLFIVENGFGAVDEVVDGHIHDDYRIEYLKAHITAAIEAVDQDGVDLIGYTPWGIIDIVSFTTGEMKKRYGLIYVDRDNDGHGTMERLKKDSFYWYQQVIASNGDKL
>NZ_CP041037.1|WP_000066934.1|2548968_2549760_-|hypothetical-protein
MSNKYKEQAQDILTAVGGVENIVDATYDTKCITIHMQHTIPSTANEVKQIVDVTSVAENDAQLVIKLNGNVDEVYQQLQRLIKNANVEESENTDNINSQDTSYTPQVKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEESKVIAPFNGLVSMIVPTKHAVGIQSEDGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQQQGYNADVIVVISNSADLGKVELTMNEIITTEDVIFKIFKN
>NZ_CP041037.1|WP_000922332.1|2549908_2550613_+|GntR-family-transcriptional-regulator
MLKYEHIAKQLNAFIHQSNFKPGDKLPSVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
>NZ_CP041037.1|WP_000607067.1|2550720_2551422_-|antiholin-like-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>NZ_CP041037.1|WP_001792906.1|2551414_2551858_-|antiholin-like-murein-hydrolase-modulator-LrgA
MVVKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>NZ_CP041037.1|WP_000645452.1|2551970_2552711_-|DNA-binding-response-regulator
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>NZ_CP041037.1|WP_115391179.1|2552713_2554453_-|sensor-histidine-kinase
MLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETTTHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>NZ_CP041037.1|WP_000608821.1|2554712_2555387_-|iron-sulfur-cluster-repair-di-iron-protein-ScdA
MINKNDIVADIVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>NZ_CP041037.1|WP_000975352.1|2555530_2557252_-|glycosyltransferase-family-2-protein
MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEEQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISMKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTVHMTYSLK
>NZ_CP041037.1|WP_000240915.1|2557284_2558973_-|CDP-glycerol-glycerophosphotransferase-family-protein
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDEKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1005989-1006005	0	1.0
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1656375-1656391	0	1.0
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	536237-536253	0	1.0
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1447131-1447147	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1660340-1660356	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	2469970-2469986	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	2666581-2666597	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	547045-547061	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	863032-863048	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1148491-1148507	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1180955-1180971	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1359432-1359448	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1798987-1799003	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1799103-1799119	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1799219-1799235	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	1895238-1895254	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	2021011-2021027	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	2021069-2021085	1	0.941
NZ_CP041037_3	3.1\|536129\|17\|NZ_CP041037\|PILER-CR	536129-536145	17	NZ_CP041037.1	2026503-2026519	1	0.941
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	546988-547015	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	853626-853653	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1359492-1359519	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1799047-1799074	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1799163-1799190	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1963627-1963654	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	2562569-2562596	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1447060-1447087	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1656251-1656278	1	0.964
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	2666455-2666482	1	0.964
NZ_CP041037_6	6.1\|1583317\|38\|NZ_CP041037\|CRISPRCasFinder	1583317-1583354	38	NZ_CP041037.1	1583544-1583581	1	0.974
NZ_CP041037_8	8.1\|1914826\|33\|NZ_CP041037\|CRISPRCasFinder	1914826-1914858	33	NZ_CP041037.1	1005844-1005876	1	0.97
NZ_CP041037_10	10.1\|2547342\|33\|NZ_CP041037\|CRISPRCasFinder	2547342-2547374	33	NZ_CP041037.1	1656263-1656295	1	0.97
NZ_CP041037_10	10.1\|2547342\|33\|NZ_CP041037\|CRISPRCasFinder	2547342-2547374	33	NZ_CP041037.1	2666467-2666499	1	0.97
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	2547287-2547318	1	0.969
NZ_CP041037_3	3.2\|536188\|29\|NZ_CP041037\|PILER-CR	536188-536216	29	NZ_CP041037.1	546975-547003	2	0.931
NZ_CP041037_3	3.2\|536188\|29\|NZ_CP041037\|PILER-CR	536188-536216	29	NZ_CP041037.1	1359479-1359507	2	0.931
NZ_CP041037_3	3.2\|536188\|29\|NZ_CP041037\|PILER-CR	536188-536216	29	NZ_CP041037.1	1447072-1447100	2	0.931
NZ_CP041037_3	3.2\|536188\|29\|NZ_CP041037\|PILER-CR	536188-536216	29	NZ_CP041037.1	1572585-1572613	2	0.931
NZ_CP041037_3	3.2\|536188\|29\|NZ_CP041037\|PILER-CR	536188-536216	29	NZ_CP041037.1	1799034-1799062	2	0.931
NZ_CP041037_3	3.2\|536188\|29\|NZ_CP041037\|PILER-CR	536188-536216	29	NZ_CP041037.1	1799150-1799178	2	0.931
NZ_CP041037_3	3.2\|536188\|29\|NZ_CP041037\|PILER-CR	536188-536216	29	NZ_CP041037.1	2562556-2562584	2	0.931
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1005806-1005833	2	0.929
NZ_CP041037_5	5.1\|1180899\|28\|NZ_CP041037\|CRISPRCasFinder	1180899-1180926	28	NZ_CP041037.1	1914788-1914815	2	0.929
NZ_CP041037_8	8.1\|1914826\|33\|NZ_CP041037\|CRISPRCasFinder	1914826-1914858	33	NZ_CP041037.1	1572555-1572587	2	0.939
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	547030-547061	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	863017-863048	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	1359417-1359448	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	1447131-1447162	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	1798972-1799003	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	1799088-1799119	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	1799204-1799235	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	2020996-2021027	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	2026488-2026519	2	0.938
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP041037.1	2666581-2666612	2	0.938

1. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1005989-1006005, mismatch: 0, identity: 1.0

agaaattctacagacaa	CRISPR spacer
agaaattctacagacaa	Protospacer
*****************

2. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1656375-1656391, mismatch: 0, identity: 1.0

agaaattctacagacaa	CRISPR spacer
agaaattctacagacaa	Protospacer
*****************

3. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 536237-536253, mismatch: 0, identity: 1.0

agaaattctacagacaa	CRISPR spacer
agaaattctacagacaa	Protospacer
*****************

4. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1447131-1447147, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

5. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1660340-1660356, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaaacaa	Protospacer
************.****

6. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 2469970-2469986, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaaacaa	Protospacer
************.****

7. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 2666581-2666597, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

8. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 547045-547061, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

9. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 863032-863048, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

10. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1148491-1148507, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

11. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1180955-1180971, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

12. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1359432-1359448, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

13. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1798987-1799003, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

14. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1799103-1799119, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

15. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1799219-1799235, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

16. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 1895238-1895254, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

17. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 2021011-2021027, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

18. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 2021069-2021085, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaatttctacagacaa	Protospacer
**** ************

19. spacer 3.1|536129|17|NZ_CP041037|PILER-CR matches to position: 2026503-2026519, mismatch: 1, identity: 0.941

agaaattctacagacaa	CRISPR spacer
agaaattctacaggcaa	Protospacer
*************.***

20. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 546988-547015, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

21. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 853626-853653, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

22. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1359492-1359519, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

23. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1799047-1799074, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

24. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1799163-1799190, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

25. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1963627-1963654, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

26. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 2562569-2562596, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

27. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1447060-1447087, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

28. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1656251-1656278, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

29. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 2666455-2666482, mismatch: 1, identity: 0.964

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaataatgtgcaagttgggg	Protospacer
********* ******************

30. spacer 6.1|1583317|38|NZ_CP041037|CRISPRCasFinder matches to position: 1583544-1583581, mismatch: 1, identity: 0.974

tcccagttatcaatttattgattactgcgtctttatct	CRISPR spacer
tcccagttatcaatttattgattactacgtctttatct	Protospacer
**************************.***********

31. spacer 8.1|1914826|33|NZ_CP041037|CRISPRCasFinder matches to position: 1005844-1005876, mismatch: 1, identity: 0.97

gcctctgtgttggggccccgccaacttgcacat	CRISPR spacer
gcttctgtgttggggccccgccaacttgcacat	Protospacer
**.******************************

32. spacer 10.1|2547342|33|NZ_CP041037|CRISPRCasFinder matches to position: 1656263-1656295, mismatch: 1, identity: 0.97

cattattgtatgctgactttccgccagcttcta	CRISPR spacer
cattattgtaagctgactttccgccagcttcta	Protospacer
********** **********************

33. spacer 10.1|2547342|33|NZ_CP041037|CRISPRCasFinder matches to position: 2666467-2666499, mismatch: 1, identity: 0.97

cattattgtatgctgactttccgccagcttcta	CRISPR spacer
cattattgtaagctgactttccgccagcttcta	Protospacer
********** **********************

34. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 2547287-2547318, mismatch: 1, identity: 0.969

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttacctgtagaatttcttttcgaaattctctg	Protospacer
*****************************.**

35. spacer 3.2|536188|29|NZ_CP041037|PILER-CR matches to position: 546975-547003, mismatch: 2, identity: 0.931

aggtgacgaaaagtcagcatacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
** *************** **********

36. spacer 3.2|536188|29|NZ_CP041037|PILER-CR matches to position: 1359479-1359507, mismatch: 2, identity: 0.931

aggtgacgaaaagtcagcatacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
** *************** **********

37. spacer 3.2|536188|29|NZ_CP041037|PILER-CR matches to position: 1447072-1447100, mismatch: 2, identity: 0.931

aggtgacgaaaagtcagcatacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
** *************** **********

38. spacer 3.2|536188|29|NZ_CP041037|PILER-CR matches to position: 1572585-1572613, mismatch: 2, identity: 0.931

aggtgacgaaaagtcagcatacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
** *************** **********

39. spacer 3.2|536188|29|NZ_CP041037|PILER-CR matches to position: 1799034-1799062, mismatch: 2, identity: 0.931

aggtgacgaaaagtcagcatacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
** *************** **********

40. spacer 3.2|536188|29|NZ_CP041037|PILER-CR matches to position: 1799150-1799178, mismatch: 2, identity: 0.931

aggtgacgaaaagtcagcatacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
** *************** **********

41. spacer 3.2|536188|29|NZ_CP041037|PILER-CR matches to position: 2562556-2562584, mismatch: 2, identity: 0.931

aggtgacgaaaagtcagcatacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
** *************** **********

42. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1005806-1005833, mismatch: 2, identity: 0.929

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagctttcaataatgtgcaagttgggg	Protospacer
******* * ******************

43. spacer 5.1|1180899|28|NZ_CP041037|CRISPRCasFinder matches to position: 1914788-1914815, mismatch: 2, identity: 0.929

tcagcttactataatgtgcaagttgggg	CRISPR spacer
tcagcttacaatagtgtgcaagttgggg	Protospacer
********* ***.**************

44. spacer 8.1|1914826|33|NZ_CP041037|CRISPRCasFinder matches to position: 1572555-1572587, mismatch: 2, identity: 0.939

gcctctgtgttggggccccgccaacttgcacat	CRISPR spacer
gcttctatgttggggccccgccaacttgcacat	Protospacer
**.***.**************************

45. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 547030-547061, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

46. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 863017-863048, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

47. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 1359417-1359448, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

48. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 1447131-1447162, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

49. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 1798972-1799003, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

50. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 1799088-1799119, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

51. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 1799204-1799235, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

52. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 2020996-2021027, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

53. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 2026488-2026519, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

54. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to position: 2666581-2666612, mismatch: 2, identity: 0.938

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctctg	Protospacer
**.**************************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_KY270853	Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence	37339-37370	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_KX839207	Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence	106205-106236	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	319442-319473	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP025467	Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence	229082-229113	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP019048	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence	17455-17486	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NC_018107	Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence	206727-206758	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP022441	Klebsiella sp. LY plasmid unnamed3, complete sequence	191028-191059	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	KU318421	Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence	37881-37912	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NC_023911	Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence	256422-256453	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP025964	Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence	172857-172888	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP038277	Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence	221440-221471	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP024641	Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence	281239-281270	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	CP027603	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence	71493-71524	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP046614	Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence	37800-37831	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP026014	Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence	118204-118235	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP026019	Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence	275327-275358	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_MF344561	Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence	38947-38978	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_MF344566	Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence	37553-37584	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_MF344562	Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence	40101-40132	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_MF344567	Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence	37881-37912	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_MF344563	Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence	37792-37823	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_MF344564	Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence	38947-38978	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP026369	Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence	83124-83155	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NZ_CP028952	Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence	436045-436076	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	MN661402	Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence	222862-222893	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	MK599315	Pseudomonas phage PA1C, complete genome	261289-261320	7	0.781
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	NC_010371	Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence	149144-149175	10	0.688
NZ_CP041037_10	10.2\|2547398\|32\|NZ_CP041037\|CRISPRCasFinder	2547398-2547429	32	MN103543	Pseudomonas phage vB_PaeM_PS119XW, complete genome	261900-261931	10	0.688

1. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_KY270853 (Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

2. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_KX839207 (Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

3. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP021328 (Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

4. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP025467 (Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

5. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP019048 (Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

6. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NC_018107 (Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

7. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP022441 (Klebsiella sp. LY plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

8. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to KU318421 (Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

9. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NC_023911 (Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

10. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP025964 (Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

11. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP038277 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

12. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP024641 (Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

13. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to CP027603 (UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

14. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP046614 (Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

15. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP026014 (Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

16. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP026019 (Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

17. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_MF344561 (Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

18. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_MF344566 (Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

19. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_MF344562 (Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

20. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_MF344567 (Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

21. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_MF344563 (Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

22. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_MF344564 (Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

23. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP026369 (Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

24. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NZ_CP028952 (Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

25. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 7, identity: 0.781

-ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
cgctgctgt-gaatttctttacgaaattccttg	Protospacer
  .  **** ********** ********.***

26. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 7, identity: 0.781

--ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
tattact--cagaatttcttttcgcaattgtttc	Protospacer
  ****.  .************** **** ***

27. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 10, identity: 0.688

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
tgctaaagagtatttctttttgaaattctttc	Protospacer
*  .  . ** *********.**********

28. spacer 10.2|2547398|32|NZ_CP041037|CRISPRCasFinder matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 10, identity: 0.688

ttacctgtagaatttcttttcgaaattctttg	CRISPR spacer
tattgctcagaatttcttttcgcaattgtttc	Protospacer
*  . . .************** **** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

748265 : 801449

Staphylococcus_phage(71.88%)

tail,holin,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010956572.1\|748265_748700_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_001086743.1\|748680_749343_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_000372758.1\|749315_749780_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_000159054.1\|749772_750798_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-63	41.2
WP_000106331.1\|750899_752510_-	MutS family DNA mismatch repair protein	A0A0N9R0S5	Chrysochromulina_ericina_virus	3.3e-19	26.9
WP_001792272.1\|753249_753378_+	hypothetical protein	NA	NA	NA	NA
WP_000602053.1\|753522_755451_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	9.3e-53	30.2
WP_001283612.1\|755703_756339_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_072353927.1\|756693_757722_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_000581077.1\|757781_758006_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_111124536.1\|758213_759464_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	1.0e-39	31.0
WP_000790325.1\|759646_760597_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_000141416.1\|760745_762230_+	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	1.5e-18	25.4
WP_001253309.1\|762226_763186_+	carbohydrate kinase	NA	NA	NA	NA
WP_000688498.1\|763554_764271_-	response regulator transcription factor	A0A2H4J4Z6	uncultured_Caudovirales_phage	3.0e-25	32.6
WP_145326030.1\|764289_765573_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_001094921.1\|765602_765746_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_001105696.1\|765748_766312_-	accessory gene regulator ArgB-like protein	NA	NA	NA	NA
WP_001549197.1\|766547_766682_+	delta-lysin family phenol-soluble modulin	NA	NA	NA	NA
WP_000867951.1\|767281_768067_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA
WP_000522384.1\|768427_769054_-	nitroreductase family protein	NA	NA	NA	NA
WP_145326032.1\|769250_770483_+	hypothetical protein	NA	NA	NA	NA
WP_000197644.1\|770507_771251_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000917289.1\|771427_771712_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
WP_000240642.1\|771787_773404_+	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
WP_001045085.1\|773937_775245_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000361985.1\|776131_776575_+	hypothetical protein	NA	NA	NA	NA
WP_000206637.1\|777297_778521_-	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_000791404.1\|778956_780009_+	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.5e-36	34.6
WP_000595325.1\|780030_781047_+	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	3.0e-26	29.3
WP_000114226.1\|782215_782620_+	hypothetical protein	G4KNQ5	Staphylococcus_phage	4.3e-69	100.0
WP_000565498.1\|782616_783024_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000268735.1\|783024_783669_+\|tail	phage tail protein	A0EWZ9	Staphylococcus_phage	3.8e-120	100.0
WP_071621395.1\|783710_783935_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_001096355.1\|783984_784335_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_000504557.1\|784579_789124_+\|tail	phage tail tape measure protein	A0A075M036	Staphylococcus_phage	0.0e+00	99.4
WP_000567393.1\|789120_790605_+\|tail	phage tail protein	A0A075LZV5	Staphylococcus_phage	5.3e-298	100.0
WP_000582184.1\|790620_794406_+	hypothetical protein	D2JLF9	Staphylococcus_phage	0.0e+00	97.8
WP_000654329.1\|794395_794548_+	hypothetical protein	D2JLG0	Staphylococcus_phage	1.2e-19	98.0
WP_001040255.1\|794594_794882_+	hypothetical protein	A0A075LZJ6	Staphylococcus_phage	5.8e-44	100.0
WP_000340977.1\|794937_795312_+	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_000034846.1\|795723_796506_+	staphylococcal enterotoxin type P	A0A075M4C7	Staphylococcus_phage	1.6e-149	99.6
WP_011447039.1\|796708_796885_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_031762631.1\|796937_797045_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|797096_797351_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|797362_798118_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000920038.1\|798308_798800_+	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
WP_001793418.1\|799246_799402_-	hypothetical protein	NA	NA	NA	NA
WP_001791825.1\|799328_799583_+	hypothetical protein	Q4ZCK0	Staphylococcus_virus	8.0e-13	93.0
WP_001110820.1\|799489_799786_+	peptidoglycan hydrolase	A0A1P8L6B4	Staphylococcus_phage	1.6e-49	95.9
WP_000702263.1\|800295_800646_+	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_001791826.1\|800698_800959_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_001789576.1\|800937_801246_-	hypothetical protein	M9NTD8	Staphylococcus_phage	3.2e-40	100.0
WP_000669791.1\|801269_801449_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	1.4e-24	98.3

DBSCAN-SWA_2

903025 : 949422

Staphylococcus_phage(87.5%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001793998.1\|903025_904168_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_000181394.1\|904172_904643_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_001251226.1\|904801_905401_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
WP_000031108.1\|905425_905578_+	hypothetical protein	NA	NA	NA	NA
WP_000901023.1\|906354_906750_+	hypothetical protein	NA	NA	NA	NA
WP_000116231.1\|906945_908331_+	class II fumarate hydratase	NA	NA	NA	NA
WP_000669376.1\|908783_909605_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_000437968.1\|909767_910880_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_001045133.1\|910901_911525_+	response regulator transcription factor	NA	NA	NA	NA
WP_000375864.1\|911880_912345_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000992523.1\|912523_913648_+	DUF445 domain-containing protein	NA	NA	NA	NA
WP_000290301.1\|913716_914061_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
WP_001789044.1\|914333_914540_-	hypothetical protein	NA	NA	NA	NA
WP_001802255.1\|914553_914652_+	hypothetical protein	NA	NA	NA	NA
WP_145326050.1\|914942_916139_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_000584638.1\|916128_919065_+	AAA family ATPase	NA	NA	NA	NA
WP_001244175.1\|919061_920003_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
WP_000782127.1\|920123_921086_-	foldase	NA	NA	NA	NA
WP_000477954.1\|921290_921848_-	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_000648118.1\|922580_922946_-	YtxH domain-containing protein	NA	NA	NA	NA
WP_000004981.1\|923087_923510_-	HIT family protein	NA	NA	NA	NA
WP_000216879.1\|923643_924384_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.7e-24	29.8
WP_000551840.1\|924376_925600_+	ABC transporter permease	NA	NA	NA	NA
WP_000737976.1\|925723_926227_-	signal transduction protein TraP	NA	NA	NA	NA
WP_001790154.1\|926389_926500_+	hypothetical protein	NA	NA	NA	NA
WP_000233526.1\|926489_927527_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_000162886.1\|927584_928508_+	ferrochelatase	NA	NA	NA	NA
WP_000167554.1\|928531_929932_+	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_001838001.1\|929872_930160_-	hypothetical protein	NA	NA	NA	NA
WP_000132890.1\|930253_930808_+	serine hydrolase family protein	NA	NA	NA	NA
WP_000206350.1\|933264_934053_-	DUF1828 domain-containing protein	A0A2H4PQI0	Staphylococcus_phage	5.3e-140	95.8
WP_001086056.1\|934065_934521_-	hypothetical protein	Q4ZCB9	Staphylococcus_virus	6.3e-61	76.2
WP_000473596.1\|935416_936352_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
WP_145326052.1\|936353_937337_+	beta-channel forming cytolysin	A0A2H4PQH7	Staphylococcus_phage	2.0e-184	98.8
WP_000543845.1\|937706_938498_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000550250.1\|938502_938976_-	hypothetical protein	NA	NA	NA	NA
WP_000469595.1\|939231_939450_+	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	1.4e-26	81.9
WP_001092757.1\|939930_940512_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	2.6e-51	62.7
WP_001039428.1\|941475_942183_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	1.4e-128	98.7
WP_001039444.1\|942307_943030_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
WP_001038870.1\|943087_943807_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.6e-130	99.6
WP_001038704.1\|943927_944647_+\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
WP_011447030.1\|944595_944703_-	hypothetical protein	NA	NA	NA	NA
WP_001038735.1\|944804_945521_+\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.8e-131	99.2
WP_001038715.1\|945671_946391_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	5.4e-131	99.6
WP_031865257.1\|946455_946590_+	hypothetical protein	NA	NA	NA	NA
WP_000028653.1\|946754_948311_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.6e-287	99.0
WP_000072558.1\|948303_949422_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.6e-39	35.1

DBSCAN-SWA_3

954655 : 985010

Staphylococcus_phage(93.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864138.1\|954655_955213_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	3.5e-77	96.2
WP_000414212.1\|955410_955983_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
WP_000627548.1\|956083_956425_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	1.0e-55	96.5
WP_000669019.1\|956465_957092_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	2.9e-96	96.6
WP_000070647.1\|957167_958163_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.1e-69	94.0
WP_001837992.1\|958243_958894_-	hypothetical protein	A0A2H4PQM8	Staphylococcus_phage	1.5e-55	98.1
WP_072361838.1\|959196_959652_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	6.7e-79	98.6
WP_000348369.1\|959810_961289_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-283	98.0
WP_000778537.1\|961293_962295_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.1e-188	98.8
WP_000718107.1\|962291_962549_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000672015.1\|962614_963088_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.5e-84	99.4
WP_072361841.1\|963092_963839_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.9e-143	99.6
WP_000109906.1\|964091_965684_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
WP_000933822.1\|966055_967249_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_043854763.1\|967373_968282_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	4.9e-137	98.7
WP_000453314.1\|968493_969327_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
WP_000623476.1\|969709_970063_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.0e-22	98.3
WP_001200542.1\|970059_970425_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000091442.1\|970680_970983_-	hypothetical protein	NA	NA	NA	NA
WP_001096494.1\|971242_971956_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_001168904.1\|972395_973031_-\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001030469.1\|973326_973770_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_001153742.1\|973756_974200_-	competence protein ComK	NA	NA	NA	NA
WP_000671052.1\|974312_974783_-	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
WP_000384171.1\|974981_975206_+	hypothetical protein	NA	NA	NA	NA
WP_001032833.1\|975481_976336_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000989121.1\|976422_977715_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
WP_000221175.1\|977714_978029_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.8e-52	97.1
WP_001261668.1\|978551_980054_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
WP_000384181.1\|980547_981579_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.8e-197	99.4
WP_000493886.1\|981585_982218_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.4e-112	99.0
WP_001175484.1\|982228_983410_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-226	99.7
WP_001008551.1\|983422_983887_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001196354.1\|984008_985010_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7

DBSCAN-SWA_4

988171 : 1000900

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000764419.1\|988171_988735_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000526539.1\|988731_989685_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_001025061.1\|989794_990976_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_001108730.1\|991266_993681_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
WP_000836465.1\|993702_994014_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_145326056.1\|994339_1000900_+	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	4.1e-302	97.1

DBSCAN-SWA_5

1201040 : 1209370

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217245.1\|1201040_1202858_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0
WP_001283055.1\|1203081_1204188_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_000624571.1\|1204318_1204996_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000683935.1\|1204998_1206099_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_001062177.1\|1206212_1207559_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000924220.1\|1207568_1208459_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
WP_001213908.1\|1208584_1209370_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_6

1679689 : 1737481

Staphylococcus_phage(72.13%)

portal,holin,capsid,tail,tRNA,terminase,head,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000908977.1\|1679689_1682092_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000003566.1\|1682091_1683150_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.9e-31	35.5
WP_000435370.1\|1683530_1684271_-	RNA methyltransferase	NA	NA	NA	NA
WP_031835094.1\|1684510_1684618_-	hypothetical protein	NA	NA	NA	NA
WP_000670946.1\|1684654_1684978_-	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA
WP_001242419.1\|1684996_1685731_-	class B sortase	NA	NA	NA	NA
WP_145326120.1\|1685792_1686761_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_001220204.1\|1686770_1687649_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA
WP_001806916.1\|1687645_1688722_-	hypothetical protein	NA	NA	NA	NA
WP_000789821.1\|1688721_1689405_-	heme uptake protein IsdC	NA	NA	NA	NA
WP_000160862.1\|1689613_1690666_+	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA
WP_001041604.1\|1690868_1692794_+	heme uptake protein IsdB	NA	NA	NA	NA
WP_000971220.1\|1692963_1693419_-	hypothetical protein	B7T0L3	Staphylococcus_virus	2.7e-72	100.0
WP_000448197.1\|1693415_1694003_-	hypothetical protein	Q4ZBG7	Staphylococcus_virus	5.4e-97	100.0
WP_031864827.1\|1694392_1695838_-	CHAP domain-containing protein	A0EWV1	Staphylococcus_virus	2.4e-295	99.8
WP_000354119.1\|1695818_1696256_-\|holin	phage holin	A0EWV0	Staphylococcus_virus	1.1e-73	100.0
WP_000398863.1\|1696311_1696707_-	hypothetical protein	A0EWU9	Staphylococcus_virus	2.1e-68	100.0
WP_145326122.1\|1696712_1697885_-\|plate	BppU family phage baseplate upper protein	A0EWU8	Staphylococcus_virus	1.6e-196	99.5
WP_000524051.1\|1697897_1699772_-	CHAP domain-containing protein	A0A2I6PCX0	Staphylococcus_phage	0.0e+00	98.7
WP_000466785.1\|1699908_1700208_-	DUF2951 family protein	A0EWU6	Staphylococcus_virus	1.9e-42	91.9
WP_015990323.1\|1700248_1700422_-	XkdX family protein	B2ZZ00	Staphylococcus_phage	1.0e-27	100.0
WP_000705919.1\|1700431_1700809_-	DUF2977 domain-containing protein	A0A2H4PQW4	Staphylococcus_phage	5.3e-61	100.0
WP_145326124.1\|1700808_1702632_-\|plate	BppU family phage baseplate upper protein	Q4ZDD5	Staphylococcus_virus	1.4e-287	96.5
WP_017804815.1\|1702631_1704530_-	hypothetical protein	Q4ZBQ2	Staphylococcus_phage	0.0e+00	99.1
WP_001122001.1\|1704542_1706429_-	peptidase	Q4ZBQ3	Staphylococcus_phage	0.0e+00	100.0
WP_000560178.1\|1706439_1707381_-\|tail	phage tail protein	A1KXA7	Staphylococcus_virus	2.6e-181	99.7
WP_000379445.1\|1707395_1710281_-	hypothetical protein	A0A0E3T8J3	Staphylococcus_phage	0.0e+00	99.7
WP_000880588.1\|1710284_1710569_-	hypothetical protein	A0A0E3TAI0	Staphylococcus_phage	1.5e-44	98.9
WP_000134337.1\|1710613_1711120_-	hypothetical protein	Q4ZBQ7	Staphylococcus_phage	2.7e-92	100.0
WP_000057582.1\|1711186_1711744_-\|tail	tail protein	Q4ZBQ8	Staphylococcus_phage	8.2e-103	100.0
WP_000270190.1\|1711744_1712170_-	DUF3168 domain-containing protein	A0A0E3XBP2	Staphylococcus_phage	1.2e-74	100.0
WP_001151323.1\|1712182_1712590_-	HK97 gp10 family phage protein	A0A0E3T8J0	Staphylococcus_phage	3.4e-74	100.0
WP_000483041.1\|1712576_1712912_-\|head	phage head closure protein	A0A0E3TAH8	Staphylococcus_phage	8.8e-60	100.0
WP_000177348.1\|1712923_1713274_-\|head,tail	phage head-tail adapter protein	A0A0E3T9I9	Staphylococcus_phage	1.9e-60	100.0
WP_000235168.1\|1713434_1714349_-\|capsid	phage major capsid protein	A0A0H3U2U7	Staphylococcus_phage	1.2e-170	100.0
WP_001019219.1\|1714365_1714950_-	DUF4355 domain-containing protein	A0A0N7E0U8	Staphylococcus_phage	1.3e-77	100.0
WP_000184128.1\|1715045_1715996_-	hypothetical protein	A0A0E3TAH5	Staphylococcus_phage	2.8e-175	99.4
WP_000177423.1\|1715964_1717389_-\|portal	phage portal protein	Q4ZBZ7	Staphylococcus_virus	3.1e-271	99.8
WP_001037578.1\|1717385_1718609_-\|terminase	PBSX family phage terminase large subunit	A0A0N9BAX9	Staphylococcus_phage	7.5e-242	100.0
WP_000594080.1\|1718601_1719096_-	hypothetical protein	A0A059T7P8	Staphylococcus_phage	1.1e-74	99.4
WP_000286968.1\|1719450_1719852_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_000166075.1\|1719852_1720026_-	transcriptional activator RinB	A0A0H4ISR0	Staphylococcus_phage	3.7e-22	100.0
WP_000195791.1\|1720022_1720229_-	DUF1381 domain-containing protein	A0A0H4IPW6	Staphylococcus_phage	4.5e-30	100.0
WP_001282070.1\|1720225_1720471_-	hypothetical protein	A0A0H4ITX2	Staphylococcus_phage	2.0e-37	100.0
WP_000181822.1\|1720507_1721041_-	dUTP pyrophosphatase	Q4ZCN7	Staphylococcus_virus	7.1e-96	100.0
WP_047213620.1\|1721033_1721282_-	DUF1024 family protein	A0A2K9VBU0	Staphylococcus_phage	2.0e-37	98.8
WP_145326126.1\|1721274_1721550_-	hypothetical protein	Q4ZCN9	Staphylococcus_virus	9.5e-44	97.8
WP_001808043.1\|1721549_1721960_-	hypothetical protein	Q4ZCP0	Staphylococcus_virus	8.0e-71	100.0
WP_001126836.1\|1721970_1722219_-	hypothetical protein	A0A2I6PDI0	Staphylococcus_phage	3.2e-43	100.0
WP_031807829.1\|1722219_1722579_-	phage protein	Q4ZBU0	Staphylococcus_virus	4.2e-60	96.6
WP_001187236.1\|1722579_1722765_-	DUF3113 family protein	A0A068A236	Staphylococcus_phage	7.8e-26	95.1
WP_145326128.1\|1722769_1723174_-	DUF1064 domain-containing protein	A0A059T5A5	Staphylococcus_phage	3.5e-71	97.0
WP_001123681.1\|1723183_1723405_-	DUF3269 family protein	A0A2H4PQI9	Staphylococcus_phage	2.2e-35	100.0
WP_031927495.1\|1723418_1723577_-	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	1.3e-21	96.2
WP_070225381.1\|1723570_1724350_-	ATP-binding protein	G4KNP1	Staphylococcus_phage	1.9e-145	99.6
WP_115288693.1\|1724359_1725130_-	replication protein	A0A0N6WMQ8	Staphylococcus_phage	2.0e-115	99.2
WP_000371250.1\|1725194_1726052_+	DUF4393 domain-containing protein	Q4ZBL8	Staphylococcus_phage	9.5e-159	100.0
WP_001199439.1\|1726157_1726829_-	hypothetical protein	A7TWM9	Staphylococcus_phage	2.0e-127	100.0
WP_011447037.1\|1726841_1727342_-	single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	7.2e-90	100.0
WP_001288247.1\|1727426_1728200_-	AAA family ATPase	A0EWP9	Staphylococcus_virus	1.6e-141	100.0
WP_000002516.1\|1728199_1728679_-	siphovirus Gp157 family protein	A0A0H4J328	Staphylococcus_phage	1.1e-82	100.0
WP_107386909.1\|1728693_1728954_-	DUF1108 family protein	E9LT80	Staphylococcus_phage	2.0e-43	98.8
WP_000066026.1\|1729047_1729209_-	DUF1270 family protein	C8CGY5	Staphylococcus_phage	2.5e-20	100.0
WP_000395457.1\|1729388_1729619_+	hypothetical protein	R4IG40	Staphylococcus_phage	2.3e-35	100.0
WP_000390105.1\|1729822_1730017_-	hypothetical protein	E9LT75	Staphylococcus_phage	1.2e-29	100.0
WP_001002760.1\|1730033_1730798_-	phage antirepressor Ant	R4IFK0	Staphylococcus_phage	2.7e-141	99.6
WP_000108122.1\|1730797_1730992_-	helix-turn-helix transcriptional regulator	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
WP_001055143.1\|1731255_1731588_+	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	4.1e-57	100.0
WP_000775187.1\|1731604_1732279_+	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
WP_000392109.1\|1732472_1733153_+	hypothetical protein	A0A2H4PQQ5	Staphylococcus_phage	5.1e-123	100.0
WP_000861313.1\|1733358_1734744_+	recombinase family protein	I1W625	Staphylococcus_phage	2.5e-265	100.0
WP_000290472.1\|1734860_1735034_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_001791487.1\|1734977_1735202_+	hypothetical protein	NA	NA	NA	NA
WP_000872158.1\|1735113_1735671_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_000843612.1\|1735797_1736937_+	nucleotidyltransferase	NA	NA	NA	NA
WP_000401377.1\|1736998_1737481_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2

DBSCAN-SWA_7

1789161 : 1797634

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000238664.1\|1789161_1789728_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
WP_000030812.1\|1789730_1790759_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
WP_145326131.1\|1790751_1792236_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000032727.1\|1792214_1794404_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
WP_000666799.1\|1794396_1795068_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000848350.1\|1795069_1795333_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000174053.1\|1795332_1796037_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_001010406.1\|1796040_1797165_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000861572.1\|1797151_1797634_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_8

1986781 : 2004282

Staphylococcus_phage(73.68%)

terminase,coat,integrase

attL 1987690:1987707|attR 2001606:2001623

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001043552.1\|1986781_1987582_-	staphylococcal enterotoxin type C2	A0A097PAT7	Streptococcus_pyogenes_phage	3.1e-50	43.4
1987690:1987707	attL	NA	NA	NA	NA
WP_001035612.1\|1988365_1988920_+	DUF4888 domain-containing protein	A0A1W6JQE5	Staphylococcus_phage	4.2e-59	67.2
WP_000801979.1\|1989116_1990085_-	Abi family protein	A0A0H4U080	Erysipelothrix_phage	5.9e-24	27.3
WP_001293071.1\|1990361_1990931_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	4.6e-101	98.4
WP_072326620.1\|1990927_1991140_-	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	5.1e-29	88.6
WP_000777464.1\|1991271_1991799_-\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	1.1e-88	98.9
WP_000856046.1\|1992027_1992606_-	hypothetical protein	A0A1W6JQG0	Staphylococcus_phage	7.8e-80	95.8
WP_001288441.1\|1992640_1992985_-	hypothetical protein	A0A1W6JQF3	Staphylococcus_phage	1.4e-57	100.0
WP_001019807.1\|1993694_1994336_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	5.5e-111	92.0
WP_000998185.1\|1994332_1994617_-	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	7.7e-49	98.9
WP_001039170.1\|1994618_1994981_-	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	3.4e-65	98.3
WP_000390453.1\|1995281_1996739_-	hypothetical protein	A0A1W6JQD6	Staphylococcus_phage	6.6e-277	95.9
WP_145326168.1\|1996755_1997625_-	mobile element-associated protein	A0A1W6JQL5	Staphylococcus_phage	4.3e-159	95.5
WP_001103939.1\|1997688_1998006_-	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	3.2e-19	57.0
WP_145326170.1\|1998056_1998218_-	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	4.3e-20	96.2
WP_000784885.1\|1998210_1998357_-	hypothetical protein	NA	NA	NA	NA
WP_000163544.1\|1998368_1998587_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001045296.1\|1998622_1998826_-	transcriptional regulator	NA	NA	NA	NA
WP_000358990.1\|1998961_1999765_+	helix-turn-helix transcriptional regulator	A0A2H4JC02	uncultured_Caudovirales_phage	5.3e-10	55.9
WP_000149511.1\|1999754_2000861_+\|integrase	site-specific integrase	H0UST3	Bacillus_phage	1.1e-77	44.4
WP_001085185.1\|2001423_2001888_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
2001606:2001623	attR	NA	NA	NA	NA
WP_001050052.1\|2001909_2004282_-	ribonuclease R	Q0GXV6	Lactococcus_phage	6.6e-93	39.1

DBSCAN-SWA_9

2054913 : 2069311

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616839.1\|2054913_2055675_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6
WP_001245577.1\|2055671_2056628_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000876318.1\|2056614_2057586_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_000499195.1\|2057624_2057780_-	hypothetical protein	NA	NA	NA	NA
WP_000562498.1\|2057960_2058932_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000855505.1\|2059049_2061155_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000692521.1\|2061117_2061516_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_001790091.1\|2061665_2061932_-	hypothetical protein	NA	NA	NA	NA
WP_001068497.1\|2062316_2063183_+	DMT family transporter	NA	NA	NA	NA
WP_000930014.1\|2063202_2063703_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001837858.1\|2063732_2063978_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|2064043_2065549_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_031797439.1\|2065626_2065728_-	hypothetical protein	NA	NA	NA	NA
WP_000429006.1\|2065817_2066735_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
WP_145326178.1\|2067359_2067902_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
WP_145326180.1\|2068252_2069311_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.5e-20	27.3

DBSCAN-SWA_10

2081282 : 2089101

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217797.1\|2081282_2082434_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1
WP_000604514.1\|2082417_2083011_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_000446724.1\|2083361_2084030_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000941336.1\|2084031_2084451_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_001062972.1\|2084454_2085168_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000637687.1\|2085266_2085851_+	hypothetical protein	NA	NA	NA	NA
WP_001093562.1\|2086130_2086571_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_001037807.1\|2086911_2087385_+	DoxX family protein	NA	NA	NA	NA
WP_000149344.1\|2087359_2088046_+	response regulator transcription factor	NA	NA	NA	NA
WP_000244417.1\|2088045_2089101_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	1.6e-14	29.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041037

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection