Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040455 Escherichia coli strain UPEC132 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP040456 Escherichia coli strain UPEC132 chromosome, complete genome 6 crisprs cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,WYL 0 5 9 0
NZ_CP040454 Escherichia coli strain UPEC132 plasmid unnamed1, complete sequence 0 crisprs RT 0 0 0 0

Results visualization

1. NZ_CP040456
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040456_1 1092766-1092854 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040456_2 1730994-1731107 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040456_3 2463590-2463713 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040456_4 3180509-3180600 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040456_5 3885292-3885427 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040456_6 4214306-4214438 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040456_4 4.1|3180535|40|NZ_CP040456|CRISPRCasFinder 3180535-3180574 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP040456_6 6.1|4214323|42|NZ_CP040456|PILER-CR 4214323-4214364 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 1 0.976
NZ_CP040456_3 3.1|2463633|38|NZ_CP040456|CRISPRCasFinder 2463633-2463670 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP040456_6 6.2|4214382|40|NZ_CP040456|PILER-CR 4214382-4214421 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 2 0.95
NZ_CP040456_1 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder 1092796-1092824 29 MN694478 Marine virus AFVG_250M504, complete genome 5065-5093 5 0.828
NZ_CP040456_1 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder 1092796-1092824 29 MN694270 Marine virus AFVG_250M505, complete genome 5187-5215 5 0.828
NZ_CP040456_1 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder 1092796-1092824 29 MN694712 Marine virus AFVG_250M502, complete genome 31101-31129 5 0.828
NZ_CP040456_1 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder 1092796-1092824 29 MN693238 Marine virus AFVG_25M402, complete genome 24598-24626 6 0.793
NZ_CP040456_1 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder 1092796-1092824 29 MG592553 Vibrio phage 1.187.O._10N.286.49.F1, partial genome 81800-81828 6 0.793

1. spacer 4.1|3180535|40|NZ_CP040456|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 6.1|4214323|42|NZ_CP040456|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

3. spacer 3.1|2463633|38|NZ_CP040456|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 6.2|4214382|40|NZ_CP040456|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catggcgtagcaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *********************.*******

5. spacer 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder matches to MN694478 (Marine virus AFVG_250M504, complete genome) position: , mismatch: 5, identity: 0.828

gatacctttttcatctcta-aaaaagtgta	CRISPR spacer
aatacctttttcatctctgtaaaaactat-	Protospacer
.*****************. ***** *.* 

6. spacer 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder matches to MN694270 (Marine virus AFVG_250M505, complete genome) position: , mismatch: 5, identity: 0.828

gatacctttttcatctcta-aaaaagtgta	CRISPR spacer
aatacctttttcatctctgtaaaaactat-	Protospacer
.*****************. ***** *.* 

7. spacer 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder matches to MN694712 (Marine virus AFVG_250M502, complete genome) position: , mismatch: 5, identity: 0.828

gatacctttttcatctcta-aaaaagtgta	CRISPR spacer
aatacctttttcatctctgtaaaaactat-	Protospacer
.*****************. ***** *.* 

8. spacer 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder matches to MN693238 (Marine virus AFVG_25M402, complete genome) position: , mismatch: 6, identity: 0.793

gatacctttttcatctctaaaaaagtgta	CRISPR spacer
ttttgctttttcatctctaaaaaggtcta	Protospacer
  *  ******************.** **

9. spacer 1.1|1092796|29|NZ_CP040456|CRISPRCasFinder matches to MG592553 (Vibrio phage 1.187.O._10N.286.49.F1, partial genome) position: , mismatch: 6, identity: 0.793

gatacctttttcatctctaaaaaagtgta	CRISPR spacer
gataccttttccatctctaacaataacta	Protospacer
**********.********* ** .  **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1261143 : 1271632 9 Escherichia_phage(62.5%) NA NA
DBSCAN-SWA_2 1855894 : 1865339 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_3 1960062 : 1966372 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_4 1995943 : 2004370 7 Shigella_phage(42.86%) transposase,integrase attL 1989664:1989676|attR 2004135:2004147
DBSCAN-SWA_5 2907077 : 2954490 62 Enterobacteria_phage(59.26%) lysis,tRNA,terminase,integrase,capsid,tail,head,portal attL 2899979:2899994|attR 2961841:2961856
DBSCAN-SWA_6 3220215 : 3337826 105 Escherichia_phage(32.76%) lysis,holin,tRNA,terminase,integrase,tail,capsid,head,plate,portal,protease attL 3259337:3259352|attR 3318402:3318417
DBSCAN-SWA_7 3372430 : 3406471 46 Salmonella_phage(81.82%) lysis,terminase,integrase,tail,capsid,head,plate,portal attL 3375397:3375410|attR 3406723:3406736
DBSCAN-SWA_8 3947999 : 3970051 26 Enterobacteria_phage(23.53%) integrase attL 3940905:3940918|attR 3973751:3973764
DBSCAN-SWA_9 4469147 : 4560384 106 Enterobacteria_phage(84.78%) holin,terminase,integrase,capsid,tail,head,plate,portal,protease attL 4467871:4467888|attR 4508950:4508967
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP040455
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 43737 : 85260 55 Escherichia_phage(16.67%) integrase,transposase attL 41884:41898|attR 77802:77816
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage