CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024952	Helicobacter pylori strain B125A chromosome, complete genome	4 crisprs	cas14j,cas3,DEDDh	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP024952

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024952_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024952_1

575705-575896

Orphan

I-B

Consensus_repeat	Method
TTATAAGTGCCTTGATTGAAA	CRT

3 spacers

The CRISPR arrays of NZ_CP024952_1

>merge|NZ_CP024952|1|575705-575896|CRT
CTATAAGTGCCTTGATTGAAAGTGTCGTTATTAAAGCTAGTATTGTCATTAAAATTATAAGTGCCTTGATTGAAATTGCTGTTTTCAAAAGTGGATTGGGCGCTATTAAAGTGATAAGTCCCTTGATTGAAACTACTATTATCAAAGCTTGAACTTGTGCTGTTGCTAAAATTATAAGCGCCTTGATTGAAG

>NZ_CP024952|1|1|575705-575896|CRT
CTATAAGTGCCTTGATTGAAA	GTGTCGTTATTAAAGCTAGTATTGTCATTAAAA
TTATAAGTGCCTTGATTGAAA	TTGCTGTTTTCAAAAGTGGATTGGGCGCTATTAAAG
TGATAAGTCCCTTGATTGAAA	CTACTATTATCAAAGCTTGAACTTGTGCTGTTGCTAAAA
TTATAAGCGCCTTGATTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024952.1\|WP_145726906.1\|577870_578563_+\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP024952.1\|WP_000041791.1\|561964_562624_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145726905.1\|576727_577726_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP024952.1\|WP_001115888.1\|567679_567886_+\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP024952.1\|WP_145726898.1\|561360_561963_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP024952.1\|WP_145726907.1\|578660_581918_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP024952.1\|WP_145726901.1\|564890_565871_-\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP024952.1\|WP_145726900.1\|563420_564332_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP024952.1\|WP_145726899.1\|562620_563424_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP024952.1\|WP_145726902.1\|565809_566955_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NZ_CP024952.1\|WP_145726911.1\|587599_589189_-\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP024952.1\|WP_145726913.1\|591487_593509_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP024952.1\|WP_001099623.1\|566951_567533_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP024952.1\|WP_145727502.1\|593512_594652_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223897
NZ_CP024952.1\|WP_145726908.1\|581922_582354_+\|Sua5/YciO/YrdC/YwlC-family-protein	unknown	unknown	gnl\|CDD\|376519
NZ_CP024952.1\|WP_000613252.1\|594644_595262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145726909.1\|585223_586768_+\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP024952.1\|WP_029649684.1\|564347_564890_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP024952.1\|WP_145726903.1\|567953_569048_-\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NZ_CP024952.1\|WP_145726912.1\|589210_590767_-\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099

Protein	Function_ID	Function_description	E-value
NZ_CP024952.1\|WP_145726906.1\|577870_578563_+\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.45968e-52
NZ_CP024952.1\|WP_001115888.1\|567679_567886_+\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	4.5194e-26
NZ_CP024952.1\|WP_145726905.1\|576727_577726_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	4.11669e-158
NZ_CP024952.1\|WP_145726898.1\|561360_561963_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	3.366e-22
NZ_CP024952.1\|WP_145726907.1\|578660_581918_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP024952.1\|WP_145726901.1\|564890_565871_-\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP024952.1\|WP_145726900.1\|563420_564332_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.72942e-77
NZ_CP024952.1\|WP_145726899.1\|562620_563424_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.87012e-127
NZ_CP024952.1\|WP_145726902.1\|565809_566955_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	8.35936e-143
NZ_CP024952.1\|WP_145726911.1\|587599_589189_-\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.95942e-54
NZ_CP024952.1\|WP_145726913.1\|591487_593509_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.17293e-135
NZ_CP024952.1\|WP_001099623.1\|566951_567533_-\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	7.47302e-98
NZ_CP024952.1\|WP_145727502.1\|593512_594652_-\|N-6-DNA-methylase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	2.2885e-53
NZ_CP024952.1\|WP_145726908.1\|581922_582354_+\|Sua5/YciO/YrdC/YwlC-family-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	0.00014589
NZ_CP024952.1\|WP_145726909.1\|585223_586768_+\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	8.13813e-180
NZ_CP024952.1\|WP_029649684.1\|564347_564890_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	6.46267e-105
NZ_CP024952.1\|WP_145726903.1\|567953_569048_-\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.86642e-48
NZ_CP024952.1\|WP_145726912.1\|589210_590767_-\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.09862e-53

>NZ_CP024952.1|WP_145726903.1|567953_569048_-|Hop-family-outer-membrane-protein-HopJ/HopK
MQKTLLSLPLLFLSFCIAEENGAYASVGFEYSISHAIQHNNPFLNQERIQIISNAQNKIYKLNQVKNEITSMQNTFNYTNNALKNHSKLTPTEMQAEQYYLQSTLQNIEKIVTLSGGVASNPQLAQALEKMQEPATNPLELAENLKNLELQFTQSQNRMLSSLSSQIAQISNSLSALDPNSYSKNVSSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKKHSSVGFYAGFALAGSSWVGSGLGMWVSQRDFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NZ_CP024952.1|WP_001115888.1|567679_567886_+|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASVVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP024952.1|WP_001099623.1|566951_567533_-|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCSSCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQRFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP024952.1|WP_145726902.1|565809_566955_-|tRNA-pseudouridine(13)-synthase-TruD
MNLSFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAHKTEQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSLKENLEFFKQKNLSVNSNTLKALKNQVHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP024952.1|WP_145726901.1|564890_565871_-|zinc-metalloprotease-HtpX
MRARCSKKSSMRKEKIMTNFEKIIAQNRIKTNAVLATYCVIFAFIGLLVDAIRINANDLGIALFKLITFQIFPTITIIMFLAAFVIILVCIQNFSSIMLSGDEYKLIDPSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIINAPYMNAFASGWDESNSLIALTSALIERLDKDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLVLQIVLPFLTLLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYKEIDKNSTRSAAYLFNAEMFSTHPSVKNRIQSLRRRVI
>NZ_CP024952.1|WP_029649684.1|564347_564890_-|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLKGLFKKDPKTRAEFMQLLKS
>NZ_CP024952.1|WP_145726900.1|563420_564332_-|polyprenyl-synthetase-family-protein
MNNPNLSFYYNECERFESFLNHHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNSLLESPIIVELVKILSANGGIKGMVLGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGLVASGIKDEELFKWLQAFGLKTGLCFQVLDDIIDVTQDEEESGKTTHLDGAKNSFVNLLGLEKANDYAQTLKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NZ_CP024952.1|WP_145726899.1|562620_563424_-|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITTPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVVSGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNIFKNGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK
>NZ_CP024952.1|WP_000041791.1|561964_562624_-|hypothetical-protein
MSKNHRLAFLGLIVGVFFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP024952.1|WP_145726898.1|561360_561963_-|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVFIESFDHAHHFWDKESDEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVFSNNEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHPNCVSFSQGIQNLWQDKDFFNKIISDEKQCFFHAKPLHQIP
>NZ_CP024952.1|WP_145726905.1|576727_577726_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRTVLERNDTNPQLEVIGINDPANWEILAYLLEHDSAHGLLPKEMRYSNYKLIIGSLEIPVFNSIKDLKGVDIILECSGKFLEPKTLENYLLLGAKKVLLSAPFIGEYDEKQYPTLVYGVNHSLYQNQAIVSNASCTTNAIAPICAILDKAFNIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFMYHY
>NZ_CP024952.1|WP_145726906.1|577870_578563_+|Bax-inhibitor-1/YccA-family-protein
MALYDRANSHNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP024952.1|WP_145726907.1|578660_581918_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNPKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRGLKNLGFSDARIAAKIKENDNLEVSPFEVELARMHLQIAPHFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLRAEILDEIERVSAKIALHLGVVGLLNIQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARTLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLILALEESSKEDELLALQDYLK
>NZ_CP024952.1|WP_145726908.1|581922_582354_+|Sua5/YciO/YrdC/YwlC-family-protein
MALVYLAQSDTTIGLLSKDSEKLNALKNRPKNQSVLIESADFTTLKSLVRAPNAFKNLIRRSAKTTFIYPNSKAVRVVRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASKLADVIVSDERGLFESSSSKIFRLYKHKKVRVR
>NZ_CP024952.1|WP_145726909.1|585223_586768_+|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITATYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQMGRANEYSVQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP024952.1|WP_145726911.1|587599_589189_-|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTTSVTQCGSNSTAASGSTTAAATTNNSPCFQGNLALYEEMVSSIKTLRQSISNNIFQGNNNTTSQNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYGNGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP024952.1|WP_145726912.1|589210_590767_-|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNGNDVSANALLQGAVGSGTCAAAGTANSSSLDNSQSACTAAGYYWLPSLTDKILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALVAKNGTATSGTSGATGSDGQTYSTQAIQYLQNQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQAVYNELTKNTISGSAVNNAGINSNQANAVQGRASQLPNALYNAQVTLNKINALNNQVRSMPYLPQFRAGNSRSTNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP024952.1|WP_145726913.1|591487_593509_-|UvrD-helicase-domain-containing-protein
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWISSKNPEHTPYAALYENILDEFENTKKKHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGKFNKPALLNYNDNIAQCQDIAKRIVMRKGFKEVAVIFRNNASADQLEAALRSYNVPSKRKGSASFFESKEVALALDICALIFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGNGDLKLALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPD
>NZ_CP024952.1|WP_145727502.1|593512_594652_-|N-6-DNA-methylase
MNNLDIKTLGQVFTPKKIVDFMLTLKQNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPNGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKGDFSRITNDGLQFVCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNLEFVTSITKRTNVLEKMVFVNEPNDYLLQHKDSLMQRKIKKFNENNWYQWGRMHHISPKKRIYVNTKTCQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQRSLENALLPKDFFNLG
>NZ_CP024952.1|WP_000613252.1|594644_595262_-|hypothetical-protein
MIPTQLNEIAEFLKTNPYHLSHPLQDGRLNSSVNEEEILNTIKHSFPIQLPKAREWWDFSFEENDIFYPVNIKTTTTKTADNLNCKLGIYYALCGLLPEFNNEIAWEKYFQKLHKDLGKNTNRDYYFLIINKNDPKDIFINSLKGIQTLQPNNLPFQCKWDNNREIVQRDFTESKNFILSALAKSVTLRANIYLKFKEVFGEFFE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024952_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024952_2

1226249-1226385

Orphan

Consensus_repeat	Method
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024952_2

>merge|NZ_CP024952|2|1226249-1226385|CRISPRCasFinder
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGTCTCTCTCCATCATACTTACCCTCTTGGGTTTCTTTGCTCTGTAATTCTTCTTGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAG

>NZ_CP024952|2|1|1226249-1226385|CRISPRCasFinder
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAG	TCTCTCTCCATCATACTTACCCTCTTGGGTTTCTTTGCTCTGT
AATTCTTCTTGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024952.1\|WP_000051414.1\|1228967_1229201_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120
NZ_CP024952.1\|WP_145727268.1\|1230028_1231021_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP024952.1\|WP_145727262.1\|1223891_1224071_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145727271.1\|1232919_1233462_-\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP024952.1\|WP_145727258.1\|1218114_1220613_-\|DUF87-domain-containing-protein	unknown	unknown	gnl\|CDD\|225982
NZ_CP024952.1\|WP_145727267.1\|1228155_1228956_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NZ_CP024952.1\|WP_145727263.1\|1224060_1224846_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145727266.1\|1227754_1228159_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP024952.1\|WP_145727261.1\|1223105_1223870_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_108310617.1\|1227261_1227624_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP024952.1\|WP_039093159.1\|1225789_1226164_-\|lysozyme	unknown	unknown	gnl\|CDD\|381597
NZ_CP024952.1\|WP_145727259.1\|1220886_1221189_-\|virB2-type-IV-secretion-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP024952.1\|WP_000916576.1\|1225428_1225524_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_023526244.1\|1229197_1230004_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP024952.1\|WP_000602756.1\|1220625_1220886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145727265.1\|1226770_1227076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145727260.1\|1221178_1223095_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|379044
NZ_CP024952.1\|WP_108288949.1\|1225535_1225802_-\|lysozyme	unknown	unknown	unknown
NZ_CP024952.1\|WP_145727270.1\|1232048_1232987_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NZ_CP024952.1\|WP_145727269.1\|1231269_1232052_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435

Protein	Function_ID	Function_description	E-value
NZ_CP024952.1\|WP_000051414.1\|1228967_1229201_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	1.07135e-25
NZ_CP024952.1\|WP_145727268.1\|1230028_1231021_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	3.87121e-180
NZ_CP024952.1\|WP_145727271.1\|1232919_1233462_-\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	4.14992e-60
NZ_CP024952.1\|WP_145727258.1\|1218114_1220613_-\|DUF87-domain-containing-protein	gnl\|CDD\|225982	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].	1.19034e-159
NZ_CP024952.1\|WP_145727267.1\|1228155_1228956_-\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	1.00869e-94
NZ_CP024952.1\|WP_145727266.1\|1227754_1228159_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.23502e-35
NZ_CP024952.1\|WP_145727270.1\|1232048_1232987_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	8.98785e-88
NZ_CP024952.1\|WP_108310617.1\|1227261_1227624_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.957e-28
NZ_CP024952.1\|WP_145727259.1\|1220886_1221189_-\|virB2-type-IV-secretion-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	0.00469372
NZ_CP024952.1\|WP_023526244.1\|1229197_1230004_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	3.65774e-149
NZ_CP024952.1\|WP_039093159.1\|1225789_1226164_-\|lysozyme	gnl\|CDD\|381597	cd00735, T4-like_lys, bacteriophage T4-like lysozymes. Bacteriophage T4-like lysozymes hydrolyze the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1), as well as Dictyostelium.	8.05802e-17
NZ_CP024952.1\|WP_145727260.1\|1221178_1223095_-\|toprim-domain-containing-protein	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	0.00220412
NZ_CP024952.1\|WP_145727269.1\|1231269_1232052_+\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	1.36262e-125

>NZ_CP024952.1|WP_039093159.1|1225789_1226164_-|lysozyme
MDLEGFSPSIYTDKTGHPTIGYGYNLSVYSYEGKRITKAYGLLTDILKENHKALLSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKKERQGIWKF
>NZ_CP024952.1|WP_108288949.1|1225535_1225802_-|lysozyme
MEILKLGGCEKHCKKKYTIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRKEPERLRSQIISILMKTPKGREILKEYLNEGCILLGE
>NZ_CP024952.1|WP_000916576.1|1225428_1225524_-|hypothetical-protein
MLKNFKKAFFRALCLGALCLLGEWCSNLGRL
>NZ_CP024952.1|WP_145727263.1|1224060_1224846_-|hypothetical-protein
MSYFFKIILGTSVIVGVLLGLWRWTYDKSCFSLVFVLLILGIVAYSYISLKMHQRKCFTKCFVNSESFLSKMLHSPIMVSCFYYIFSIFTSISIAYSVLDYNWMMWGLVFCTIVVCAAVFGALEKMLRSIIKEDYLMLMSREVSAFVGTLFFIGLSCYVIYHGNMPDYLRPALIDTIKAASDSAYSNCDYTSYVLEFKKMLEGVTWWGMRKAESMGLNKGFMVAGWVAFIIYNALSGIAISRLSAQIIYCLSKYFRSECGK
>NZ_CP024952.1|WP_145727262.1|1223891_1224071_-|hypothetical-protein
MENDVKEDLEQARPKLELERQKQELEKLTQEKEQEIKKKGRKKVYLHSLANVIIYRTLI
>NZ_CP024952.1|WP_145727261.1|1223105_1223870_-|hypothetical-protein
MKFFKIPKLHLNSKECQEMFLDNVKFSKKTQQFYFQNYPDVNVEIFRKVVEDRFYSTLFGGVGSRRLYRELCELALSSKSNKIALSRHYYTQVHQCVDRSLRNAINDLEAQGLIEAVKNKPGYVYIYLKDFTKNKEFQGSKFNKNTLPSPFFLKIINFLQKNAQRLKSVKYRVNNQICELKEIVFSKFRQFNDLLFSFNPLNDTQTIFTLNYKNLSKKALPSNKCPYQKAIVLKNLQRAFNRLSVKSKDLRGCA
>NZ_CP024952.1|WP_145727260.1|1221178_1223095_-|toprim-domain-containing-protein
MAYVKNAIHLPLDSLLERNGYRLNAQKSTKIWKVYSNSNEKLLVRQNANFQWFYLNCDNKADSGNIINFCKNRNLDLMGFTQGLIINDDTIKENASKLTSKEANKFKEQQKIIDKFNQFELYDLTNSKMLEKRKLNGNLFLVYNHSLKKDKHNNMCVPNFLYSKNSHSNEIISYTRRLENPMTSLNNQVLNRPINALNKGEKGIEMLAPKDLKLIKNIVLSESIIDSMSYLQLRKLNAYESILLSCNGQFNANKLDAFLEKLLSDIEQSKSKEYADYLKKVQSFELYKGTQTRIENKTNTTRDNLTIHFSRAKYPSSTDFMPAKDWVNESVKSLDELVKVITNYHYSSAIYKNNYRNTYNTKGFSNLLIFDIDNDKDKPNISLEETKNLFKKHGIETLIIPSRNHNKEKHGHIAERFRIIIPTQQTIGQDFNCNNDFSAFNNFCAKALGIYDYIDKKVSVDQSRAYYKSPNDATPIILKGRIMDITHLKQQAMSNLFTQNTQIQTTEPEPVNKPDLSLNIVLAYDNDKNGQIYTQISEEIIYKHTENMPNVFIPYSKDCNDDLKLANLIGNDHINNEMIKNFLERIEKQSLFFGGEKKEKLEALKNECLALLKPQEQTISQNDTKENEKPIQGVDYEM
>NZ_CP024952.1|WP_145727259.1|1220886_1221189_-|virB2-type-IV-secretion-protein
MKCKNFKEKALYFMLLPMPNLLLANGSGVWQSNALQTIINFTSGPFMKAIGAIIVICVGIYVVKNLDRLGEIAWKCIGIILATIAIANAQTIATKLFGVG
>NZ_CP024952.1|WP_000602756.1|1220625_1220886_-|hypothetical-protein
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKNDTKEYYA
>NZ_CP024952.1|WP_145727258.1|1218114_1220613_-|DUF87-domain-containing-protein
MFLGLEGFKRFIFNFLSSCIPRQYSLVQENNINGKFDEKFVLTHKGNLVGAISLNGITYSNFDKEEVATQFLYRTQALNELIDGVTLRIVAKRRDIKTQTIYNKDGVSKYAKKIVNAYEKNKEFYITTYYLIIETKSVNIKGLLEKWKAKMTTDKYVNNDKEKPLKDNLKNSEAQKQEAYKIKKNALENKELQDKATLLAEILNKMSSILTDFEPKSLSSDDLLNLYAEYCNGHYCDFKYKQGRLSDGNIQSHLYFKKDHFIHDYNGIETFKRFIAVKAYDVDNITSLALSNLLCEKFNLDILLTIEAMDKERALFFIRERKKRSKDISYQNIEYLEQMVSTDRAQIQKVSLSIMVFANSKKELDKRSIIVYNTLKKEGFSAVLESINMRPIFFSFFPERNFLNSRLRPQTSQNIASLIMFEKYQEGFKENSWGDCPISVFKNQNGSAHFFNFQAKQGRDRNDNVVGHTMIIGSTGSGKSTFISFLIANLLTKYDMSVVALDRMNGLEIMTDFFEGQYNTANTDGGFYINPFSLKDTEENRQFLANWIKFMLNIDSDNQQDNKASQSIDKVIRDTYNYMGEQKNQINLLEIAKNLGSSEQDFNEILKSQGEKVYFKKFQDCLDFSKSPLSVINMDVFANDKKLMGLIAMYLFHKLFFEAKEHNKPFFLFIDETKDYIMHPIMFAYIANALAQARKINGTLCMAFQKISQVKELGIDKAKSLIGNISQVIIYPTKDTDELIECGVPLSDSEINFLHNTDMRARQVLVKNIVTNASAFIEIDLKKDLQELLYILDSNAGNRKILNDLKKTNQETYKEEYLKTKMKKESENVQYV
>NZ_CP024952.1|WP_145727265.1|1226770_1227076_-|hypothetical-protein
MKIMHQVRDFLDSCKQTIQKNSNEVFQKTKRALFKEESQKIREQAVKIVEKRLKKESMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK
>NZ_CP024952.1|WP_108310617.1|1227261_1227624_-|sel1-repeat-family-protein
MAEPNPKELFDLGVKSIEARDYIQAKKYFEKACDLKYGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGTLGMLYEFGQGVEKNLTKAAYFYSKACKLGFQKTCEILKELR
>NZ_CP024952.1|WP_145727266.1|1227754_1228159_-|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIAALLNGVVLPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPDESYADTNVRIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
>NZ_CP024952.1|WP_145727267.1|1228155_1228956_-|DNA-protecting-protein-DprA
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAKKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYFAKNPSYEEAYLKFGDKLLEYELLGKIKRINHLVVLA
>NZ_CP024952.1|WP_000051414.1|1228967_1229201_-|cell-division-topological-specificity-factor-MinE
MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILPK
>NZ_CP024952.1|WP_023526244.1|1229197_1230004_-|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLIINRLKPELVANGEMIPIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
>NZ_CP024952.1|WP_145727268.1|1230028_1231021_-|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKVRIGLYQGSLSVSKAKAEGFEVLEVKELVQQSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVVLPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSIYNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAYFECVHEVKLIADLLHYKGVEGLRKHISNTAEFGAVKNREPMGNLLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIERIGEILRAPFNHKK
>NZ_CP024952.1|WP_145727269.1|1231269_1232052_+|NAD+-synthase
MQKDYQKLIVYLCDFLEKEAQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPESKTDALNLCEIFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSNSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFKNKPIDAETLTQLGHDEILVKNITSRIQKNAFKLELPTIAQKFNPK
>NZ_CP024952.1|WP_145727270.1|1232048_1232987_+|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPLISVGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSIKGNILVPQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKIPPYYPFCLPSGLYRESIKSYKEAHLIITEDKDYQRITSISHPTKRMLLVTAIANPSRLDAFLPKEVVKKLYFRDHALFDLEFLEKEFYQNNATSLLVTSKDLVKLQDCSLPLSVLDLKLEIDPKILERIDRYILSYPCNTKERL
>NZ_CP024952.1|WP_145727271.1|1232919_1233462_-|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYSYGNTQAIDFTHLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGETILKALECIAFEELQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKEKEFIDVLLYYKDKKGYNDQFSLKS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024952_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024952_3

1238349-1238438

Orphan

Consensus_repeat	Method
AAACCCAAGCGCAAGAATTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024952_3

>merge|NZ_CP024952|3|1238349-1238438|CRISPRCasFinder
AAACCCAAGCGCAAGAATTAGAAATTCCTAAAGAAAAAACGCAAGAAAGCACAGAAGCTCTCCAAGAAACCCAAGCGCAAGAATTAGAAA

>NZ_CP024952|3|2|1238349-1238438|CRISPRCasFinder
AAACCCAAGCGCAAGAATTAGAAA	TTCCTAAAGAAAAAACGCAAGAAAGCACAGAAGCTCTCCAAG
AAACCCAAGCGCAAGAATTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024952.1\|WP_145727273.1\|1234321_1235011_-\|pseudaminic-acid-cytidylyltransferase	unknown	unknown	gnl\|CDD\|274660
NZ_CP024952.1\|WP_001878766.1\|1235903_1236623_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024952.1\|WP_145727268.1\|1230028_1231021_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP024952.1\|WP_127956226.1\|1241506_1242262_+\|HugZ-family-heme-oxygenase	unknown	unknown	gnl\|CDD\|200360
NZ_CP024952.1\|WP_145727271.1\|1232919_1233462_-\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NZ_CP024952.1\|WP_000932516.1\|1236630_1237173_-\|nuclease	unknown	unknown	gnl\|CDD\|184389
NZ_CP024952.1\|WP_000508582.1\|1239573_1239819_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234822
NZ_CP024952.1\|WP_145727272.1\|1233458_1234352_-\|CMP-N-acetylneuraminic-acid-synthetase	unknown	unknown	gnl\|CDD\|226488
NZ_CP024952.1\|WP_145727278.1\|1249044_1249929_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_CP024952.1\|WP_145727270.1\|1232048_1232987_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NZ_CP024952.1\|WP_145727279.1\|1250012_1250417_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145727275.1\|1238882_1239503_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|213788
NZ_CP024952.1\|WP_145727277.1\|1246755_1247718_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP024952.1\|WP_000709968.1\|1235034_1235748_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP024952.1\|WP_097706930.1\|1248150_1249032_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200563
NZ_CP024952.1\|WP_023526244.1\|1229197_1230004_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP024952.1\|WP_145727515.1\|1242515_1244636_+\|Hop-family-adhesin-BabB	unknown	unknown	gnl\|CDD\|375731
NZ_CP024952.1\|WP_108310594.1\|1247717_1248104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_050839678.1\|1245604_1246750_+\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|284247
NZ_CP024952.1\|WP_145727269.1\|1231269_1232052_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435

Protein	Function_ID	Function_description	E-value
NZ_CP024952.1\|WP_145727273.1\|1234321_1235011_-\|pseudaminic-acid-cytidylyltransferase	gnl\|CDD\|274660	TIGR03584, PseF, pseudaminic acid cytidylyltransferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.	6.52711e-119
NZ_CP024952.1\|WP_001878766.1\|1235903_1236623_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.31697e-50
NZ_CP024952.1\|WP_145727268.1\|1230028_1231021_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	3.87121e-180
NZ_CP024952.1\|WP_127956226.1\|1241506_1242262_+\|HugZ-family-heme-oxygenase	gnl\|CDD\|200360	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family. Members of this protein family are HugZ, a class of heme oxygenase that belongs to the PPOX family (pfam01243) and lacks homology to the HmuO family (pfam01126). Characterized members of this family include HP0318 from Helicobacter pylori and CJ1613c from Campylobacter jejuni. This enzyme releases iron during the conversion of heme to biliverdin.	1.23916e-137
NZ_CP024952.1\|WP_145727271.1\|1232919_1233462_-\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	4.14992e-60
NZ_CP024952.1\|WP_000932516.1\|1236630_1237173_-\|nuclease	gnl\|CDD\|184389	PRK13912, PRK13912, nuclease NucT; Provisional.	9.25176e-95
NZ_CP024952.1\|WP_000508582.1\|1239573_1239819_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	1.21807e-19
NZ_CP024952.1\|WP_145727272.1\|1233458_1234352_-\|CMP-N-acetylneuraminic-acid-synthetase	gnl\|CDD\|226488	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane].	8.08116e-105
NZ_CP024952.1\|WP_145727278.1\|1249044_1249929_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	4.52245e-88
NZ_CP024952.1\|WP_145727270.1\|1232048_1232987_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	8.98785e-88
NZ_CP024952.1\|WP_145727275.1\|1238882_1239503_+\|guanylate-kinase	gnl\|CDD\|213788	TIGR03263, Guanylate_kinase, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	3.80537e-98
NZ_CP024952.1\|WP_145727277.1\|1246755_1247718_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	4.17904e-93
NZ_CP024952.1\|WP_000709968.1\|1235034_1235748_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	6.56602e-85
NZ_CP024952.1\|WP_097706930.1\|1248150_1249032_-\|polysaccharide-deacetylase	gnl\|CDD\|200563	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins. This family is represented by a peptidoglycan deacetylase (HP0310, HpPgdA) from the gram-negative pathogen Helicobacter pylori. HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. It functions as a homotetramer. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase (DCA)-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, HpPgdA does not exhibit a solvent-accessible polysaccharide binding groove, suggesting that the enzyme binds a small molecule at the active site.	3.05395e-138
NZ_CP024952.1\|WP_023526244.1\|1229197_1230004_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	3.65774e-149
NZ_CP024952.1\|WP_145727515.1\|1242515_1244636_+\|Hop-family-adhesin-BabB	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	2.22476e-95
NZ_CP024952.1\|WP_050839678.1\|1245604_1246750_+\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|284247	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB. This family represents putative bacterial membrane proteins which may be sugar transporters. Members carry twelve transmembrane regions which are characteristic of members of the major facilitator sugar-transporter superfamily.	1.79721e-21
NZ_CP024952.1\|WP_145727269.1\|1231269_1232052_+\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	1.36262e-125

>NZ_CP024952.1|WP_000932516.1|1236630_1237173_-|nuclease
MLNKFKKIVGVGVLVSCLGVLQAKNSLFVLPYEQRDALNSLVSGISNARESVKIAIYSFTHKDIARAIKSVASRGIKVQIIYDYESNHNNKQSTIGYLDKYPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKMLEGCVGF
>NZ_CP024952.1|WP_001878766.1|1235903_1236623_+|outer-membrane-protein
MLVGVSLLTHVLMATEESAAPSWTKNLYMGFNYQTGSINLMTDIHEVREVTSYQTGYTNVMTSINSVKKLTNMGSNGIGLVMGYNHFFHPDKVLGLRYFAFLDWQGYGMRYPKGYYGGNNMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQELLGITNSSRVDNTSFQFLFNFGFKALFVDEHEFEIGFKFPTLNNKYYTTDALRVQMRRVFAFYVGYNYHF
>NZ_CP024952.1|WP_000709968.1|1235034_1235748_-|flagellar-basal-body-L-ring-protein-FlgH
MKKALYLGAVAFGVAFSMASANEPNIDFNPPNYVEETPSKEFIPELNKLGSLFGQGERPLFADRRAMKPNDLITIIVSEKASANYSSSKDYKSASGGNSTPPRLTYNGLDERKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGNKEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNKKKFAADAMETQMPY
>NZ_CP024952.1|WP_145727273.1|1234321_1235011_-|pseudaminic-acid-cytidylyltransferase
MRAIAIVLARSSSKRIKNKNIIDFFNKPMLAYPIEAALNSKLFEKVFISSDSMEYVNLAKNYGASFLNLRPKNLADDRATTLEAMAYHMKELELKDDDIACCLYGVSVFLQEKHLQNACETLKQNQNTDYVFTCSPFSASPYRSFSLENGVQMAFKEHSNTRTQDLKTLYHDAGLLYMGKAQAFKEMRPIFSPNSIALELSPLEVQDIDTLEDLELAKLKYSRLKNACQ
>NZ_CP024952.1|WP_145727272.1|1233458_1234352_-|CMP-N-acetylneuraminic-acid-synthetase
MQPFEKRMPVKILCDSFVTSGLGHVRRCEKILSFIEKLGVKADLYLYKHNDISAFLEGVGNDDFLITDSYRLNSKDFYLLKEKAKSLMVIEDKEHAKGFYPKNTKIMNSTLNALKHYHYLSKDYQYYLGVGFYPIDARFVYERPINTENKEVLITLGGSEQKILKEIVKILENKNVNLHIISPYTPKNPPKNTHYYSPLNPLEFSSLMKSCACAISAAGQTLYELALSQTPSLILPIASNQIIQSQEFENSGIFKQTSLKTLAKDFEKLQIQKNQAWAKNLAFGSELEGALREFLEI
>NZ_CP024952.1|WP_145727271.1|1232919_1233462_-|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYSYGNTQAIDFTHLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGETILKALECIAFEELQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKEKEFIDVLLYYKDKKGYNDQFSLKS
>NZ_CP024952.1|WP_145727270.1|1232048_1232987_+|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPLISVGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSIKGNILVPQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKIPPYYPFCLPSGLYRESIKSYKEAHLIITEDKDYQRITSISHPTKRMLLVTAIANPSRLDAFLPKEVVKKLYFRDHALFDLEFLEKEFYQNNATSLLVTSKDLVKLQDCSLPLSVLDLKLEIDPKILERIDRYILSYPCNTKERL
>NZ_CP024952.1|WP_145727269.1|1231269_1232052_+|NAD+-synthase
MQKDYQKLIVYLCDFLEKEAQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPESKTDALNLCEIFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSNSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFKNKPIDAETLTQLGHDEILVKNITSRIQKNAFKLELPTIAQKFNPK
>NZ_CP024952.1|WP_145727268.1|1230028_1231021_-|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKVRIGLYQGSLSVSKAKAEGFEVLEVKELVQQSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVVLPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSIYNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAYFECVHEVKLIADLLHYKGVEGLRKHISNTAEFGAVKNREPMGNLLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIERIGEILRAPFNHKK
>NZ_CP024952.1|WP_023526244.1|1229197_1230004_-|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLIINRLKPELVANGEMIPIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
>NZ_CP024952.1|WP_145727275.1|1238882_1239503_+|guanylate-kinase
MNNNFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVLGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVYRLKAFNFEKICKAWKNESL
>NZ_CP024952.1|WP_000508582.1|1239573_1239819_+|twin-arginine-translocase-TatA/TatE-family-subunit
MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQAKVHESSEIKSTQKQES
>NZ_CP024952.1|WP_127956226.1|1241506_1242262_+|HugZ-family-heme-oxygenase
MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDSQGVVIGYNHNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLMTDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRTMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK
>NZ_CP024952.1|WP_145727515.1|1242515_1244636_+|Hop-family-adhesin-BabB
MKKTLLLSLSLSFLLHAEDDGFYMSAGYQIGEAAQMVKNTKGIQELSDNYEKLNNLLNNYSTLNTLIKLSADPSAINDARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTSYAFTACGPGSNENANGGIQTFNNVPGQNTTTITCNSYYQPGHGGPISTENYAIINKAYQIIQKALTANGSNGEGIPVLSNTTTKLDFTINGDKRTGGKPNEPLIYPWSHGKAIPTSWNGGTSTQTSENINTENNAQELLKQASIIITTLNEACPNFQNGGSGYWQGISGNGTMCGMFANEISAIQGMIANAQEAVAQAKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEILNQAEQVVKNFEKIPKNFVSDSLGVCYEVQGGERRGTNPGQVTSNTWGAGCAYVGQTITNLKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQVQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSNFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGVKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP024952.1|WP_050839678.1|1245604_1246750_+|YbfB/YjiJ-family-MFS-transporter
MRVFVCFLGVFVSNGLARFGYVVLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLVCYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWLLLVSCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFGFGATLGSLISGPMAQKLGAKNANIFILILKSIACFLPIFFHQISLLNLSIFIMGAATTANINLFSMMALKIAGAKHFAQASSWVVFSFGIFQALFSYLFTIFLGDLGYVLIFVICGVCLVLSFIVLFPIKMQTATNK
>NZ_CP024952.1|WP_145727277.1|1246755_1247718_-|GTP-binding-protein
MPKIPITLITGFLGSGKTSFLSEYLNQIDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWRGEILKRIIIETTGLANPAPILWTILSDTFLGAHFEIQSVVACVDVLNAKMHLTNNEAREQIVFADSVLLTKTDLQNDSVALVKLKERIQSLNPSAEIFDKKNIDYESFFSRKNRAHRAILPAKDSHSQGFETLSIRFEGAMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPPKHILKDQNGSNLVFIMRHLEREKILNSLKGFKDFLGIKGFETP
>NZ_CP024952.1|WP_108310594.1|1247717_1248104_-|hypothetical-protein
MCVLCGELISSFHWSDENYGSDGSDSYGSDENLKEPNALISTNENARERKRARLKRVRLLNQILAFYGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQKLAKKEMDALDSNLLAFLNQQTHAIH
>NZ_CP024952.1|WP_097706930.1|1248150_1249032_-|polysaccharide-deacetylase
MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFAPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYFVRVGDSWSKIDYSLEAKDWMKPLIRGVETNLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK
>NZ_CP024952.1|WP_145727278.1|1249044_1249929_-|carbon-nitrogen-hydrolase-family-protein
MKIKNPAKRILKTAVIQMQSKPYALNENLQLALNLAKEAYNKGANLIVLPELFDSGYCVNDKDADFGLDFKAIEHGKETLKSETLRALSDFAKSNKVHLVACSIEKTDKKLYDSAYIIPPKGGIVGKHRKIYLWGDEKSRFKRGKKYEVFTLDFGDFSAKVGLQICYEIGFGVGANLLALQGAEILIYPSAFGKARAYNWDLLSRARALENGCFVCACNHSGEETNAQLKQTLEFAGDSRIIAPNGKIIAQATKLNEVIIAEIDLNEVALQRQKIPYLQDFDTKLTKKGFGKLT
>NZ_CP024952.1|WP_145727279.1|1250012_1250417_-|hypothetical-protein
MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSGEKEEKQRFQKFALGLEMSFNVWRLGGYGVLLGILGVLLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF

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Crispr_ID: NZ_CP024952_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024952_4

1485615-1485739

Orphan

Consensus_repeat	Method
TCGTTGCCATTACTCATGTCGTC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP024952_4

>merge|NZ_CP024952|4|1485615-1485739|CRISPRCasFinder
TCGTTGCCATTACTCATGTCGTCGTTCATATCGTTCGCGTTGTTCATGTCATCGCCCATGTCGTTGCCGTTACTCATGTCGTCATTAGCGTTACCCGCATCATCGTTGCCGTTGTTCATGTTGCT

>NZ_CP024952|4|3|1485615-1485739|CRISPRCasFinder
TCGTTGCCATTACTCATGTCGTC	GTTCATATCGTTCGCGTTGTTCATGTCATCGCCCATG
TCGTTGCCGTTACTCATGTCGTC	ATTAGCGTTACCCGCATCA
TCGTTGCCGTTGTTCATGTTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024952.1\|WP_145727410.1\|1483042_1485064_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP024952.1\|WP_000583041.1\|1496556_1497069_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP024952.1\|WP_145727408.1\|1480218_1481571_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|240393
NZ_CP024952.1\|WP_145727414.1\|1492528_1493002_+\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|272893
NZ_CP024952.1\|WP_000167675.1\|1482075_1482501_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP024952.1\|WP_145727413.1\|1491197_1492535_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|184621
NZ_CP024952.1\|WP_000755207.1\|1488968_1489226_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024952.1\|WP_145727407.1\|1478791_1480165_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NZ_CP024952.1\|WP_000779223.1\|1493347_1494064_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|184439
NZ_CP024952.1\|WP_145727412.1\|1487571_1488957_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024952.1\|WP_145727404.1\|1473520_1474504_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225506
NZ_CP024952.1\|WP_001227269.1\|1482497_1482887_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP024952.1\|WP_140563281.1\|1495967_1496555_+\|acid-activated-urea-channel	unknown	unknown	gnl\|CDD\|259831
NZ_CP024952.1\|WP_000025111.1\|1489655_1490714_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP024952.1\|WP_145727409.1\|1481576_1481765_+\|DUF5408-family-protein	unknown	unknown	gnl\|CDD\|340117
NZ_CP024952.1\|WP_145727405.1\|1474943_1475873_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NZ_CP024952.1\|WP_000724295.1\|1494067_1495777_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|184438
NZ_CP024952.1\|WP_128028654.1\|1475883_1476579_+\|aminodeoxyfutalosine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP024952.1\|WP_001273609.1\|1490838_1491108_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP024952.1\|WP_145727406.1\|1476743_1478771_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549

Protein	Function_ID	Function_description	E-value
NZ_CP024952.1\|WP_145727410.1\|1483042_1485064_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.0317e-36
NZ_CP024952.1\|WP_000583041.1\|1496556_1497069_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	1.16454e-47
NZ_CP024952.1\|WP_145727408.1\|1480218_1481571_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|240393	PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.	3.87996e-172
NZ_CP024952.1\|WP_145727414.1\|1492528_1493002_+\|lipoprotein-signal-peptidase	gnl\|CDD\|272893	TIGR00077, Lipoprotein_signal_peptidase, lipoprotein signal peptidase. Alternate name: lipoprotein signal peptidase [Protein fate, Protein and peptide secretion and trafficking].	3.08199e-43
NZ_CP024952.1\|WP_000167675.1\|1482075_1482501_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.62572e-78
NZ_CP024952.1\|WP_145727413.1\|1491197_1492535_+\|phosphoglucosamine-mutase	gnl\|CDD\|184621	PRK14324, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP024952.1\|WP_000779223.1\|1493347_1494064_+\|urease-subunit-alpha	gnl\|CDD\|184439	PRK13986, PRK13986, urease subunit beta.	9.94747e-143
NZ_CP024952.1\|WP_145727407.1\|1478791_1480165_+\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	5.53093e-18
NZ_CP024952.1\|WP_145727412.1\|1487571_1488957_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	7.85944e-50
NZ_CP024952.1\|WP_145727404.1\|1473520_1474504_-\|hypothetical-protein	gnl\|CDD\|225506	COG2958, COG2958, Uncharacterized protein conserved in bacteria [Function unknown].	3.59875e-69
NZ_CP024952.1\|WP_001227269.1\|1482497_1482887_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	8.38483e-68
NZ_CP024952.1\|WP_140563281.1\|1495967_1496555_+\|acid-activated-urea-channel	gnl\|CDD\|259831	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters. This family includes UreI proton-gated urea channels as well as putative amide transporters (AmiS of the amidase gene cluster). Helicobacter pylori UreI (HpUreI), a proton-gated inner membrane urea channel opens in acidic pH to allow urea influx to the cytoplasm. There urea is metabolized, producing NH3 and CO2, leading to buffering of the periplasm. This action is essential for the survival of H. pylori in the stomach, and has been identified as a mechanism that could be clinically targeted to prevent various illnesses associated with infection by H. pylori. UreI and the related amide channels (AmiS) appear to function as hexamers, and have 6 predicted transmembrane segments. UreI has also been shown have a lipid "plug" in the center of the hexamer. Urea enters at the periplasmic opening of UreI and must pass 2 constriction sites, one on each side of a conserved Glu (Glu 177, H. pylori numbering), to reach the cytoplasm. Urea/thiourea selectivity is diminished by mutation of a conserved Trp to Ala or Phe in constriction site 2 (cytoplasmic). Channel functionality is greatly diminished by mutation of a conserved Trp in constriction site 1 (periplasmic) and a conserved Tyr in constriction site 2, and to a lesser extent a conserved Phe in site 1. In the cytoplasm, urease hydrolyzes urea to form ammonia and carbamate, which decomposes to carbonic acid. UreI is fully open at pH 5.0 to facilitate urea influx, but closes at neutral pH, preventing over-alkalization. Glu 177 (H. pylori numbering) is present in urea channel proteins, but absent in the related amide channels, suggesting that it plays a role in urea specificity.	5.14212e-74
NZ_CP024952.1\|WP_000025111.1\|1489655_1490714_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP024952.1\|WP_145727409.1\|1481576_1481765_+\|DUF5408-family-protein	gnl\|CDD\|340117	pfam17402, DUF5408, Family of unknown function (DUF5408). This is a family of unknown function found in Helicobacteraceae. Family members are predicted to contain one trans-membrane region.	2.81835e-07
NZ_CP024952.1\|WP_145727405.1\|1474943_1475873_+\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	4.55728e-150
NZ_CP024952.1\|WP_000724295.1\|1494067_1495777_+\|urease-subunit-beta	gnl\|CDD\|184438	PRK13985, ureB, urease subunit alpha.	0
NZ_CP024952.1\|WP_128028654.1\|1475883_1476579_+\|aminodeoxyfutalosine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	9.16058e-115
NZ_CP024952.1\|WP_001273609.1\|1490838_1491108_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.98651e-23
NZ_CP024952.1\|WP_145727406.1\|1476743_1478771_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0

>NZ_CP024952.1|WP_145727410.1|1483042_1485064_+|methyl-accepting-chemotaxis-protein
MKSTRIGSKIVMMVCAVVIVISAVMGVIISYKVESVLQSQATELLQKKAQLVSFKIQGIIKRIFIGANTLEKFLSDENNAINDTLKKRMLSEFLLANPHVLLVSAIYTNNNERVITAMNLDSKIAYPNTALNENMTNQIHSLKSITRSDPYYKEVNGDKIYGMDITLPLTGKNQNVIGALNFFLNIDAFYTDVVGKKKSNTFLMGKDGRLLINPNREIQDKILSAINPDRRVAKAVEYYNQNEAGTLSYHSLSGNTETFLAIQPFDFFEEKGNNGNHWRWAIGKYVNKSLVFKEATNTKFIIITTLILGVLVLAFLVFIIVSNLITKRISRVNNTLNDFFNLLNNPKNNHAISLTPPSAYDEIGQMQASINENILKTQESIQADNKAIQNSIEVTNYVENGDFTQEIACVPKNKDLQALRNTINSIIQYFRNQIGANIESLNNALEHYKNLDFTHHIQNPKANMEKTLNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEITNIITTIDSKSQEMISQGEDIKSVVDMIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADNAESIKMQNKGVENIHNSINALQQDVQDNLTIANYSLQVSTKIDGISQDILEDVSKKKF
>NZ_CP024952.1|WP_001227269.1|1482497_1482887_+|30S-ribosomal-protein-S9
MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKARRSPQFSKR
>NZ_CP024952.1|WP_000167675.1|1482075_1482501_+|50S-ribosomal-protein-L13
MTKTAKVNDIVRDWVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHPHTAQTSKKDAK
>NZ_CP024952.1|WP_145727409.1|1481576_1481765_+|DUF5408-family-protein
MQKEQEAREIAKKAIQIVFFLGIVVVLLMMINLYMLINQINASARMSQQIKKIEERLNQERK
>NZ_CP024952.1|WP_145727408.1|1480218_1481571_+|FAD-dependent-oxidoreductase
MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIFIGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYQKDWSTMNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKLKLELGEKKICTHKGITFNMTPSPGATSCLQNALVDSQEIAAYLGESFELERFYKDLSPEELEN
>NZ_CP024952.1|WP_145727407.1|1478791_1480165_+|hypothetical-protein
MRYFLIVFLFLFVGCTKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKESYLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKSMDIERYPSAKIRAVVARDSDVRAVPTNKPFYLSPKGYPFDRYQNSLIFQGTPVLVTHFNTDKTYAHIQSSFVYGWIKVSDLAYMRDKDIELLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALIPQSQKTSQKPQKKELKAYGFLRDAKGYAILQSVILEEKDFFVFPKAFNSENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYILKNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFVNKTSSPLNAN
>NZ_CP024952.1|WP_145727406.1|1476743_1478771_+|RNA-polymerase-sigma-factor-RpoD
MKKKANEEKAPKRAKQEAKTEATQENKAKESNKAKESKIKEAKTKESKVKETAKELVPVKKLSFNEALEELFANSLSDCVSYESIIQISVKVPTLAQIKKIKELCQKYQKKLVSSSEYAKKLNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDPKKDDDGEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLRI
>NZ_CP024952.1|WP_128028654.1|1475883_1476579_+|aminodeoxyfutalosine-nucleosidase
MVQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKGLKINDLLVANQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKVANEQHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEEANMSFDAFLEKSAQTSAKFLKSMVDKL
>NZ_CP024952.1|WP_145727405.1|1474943_1475873_+|ACP-S-malonyltransferase
MQYALLFPGQGSQCIGMGKSFYESHTLAKELFERASNALKVDMKKTLFEENELLKESAYTQPAIYLVSYIAYQLLNKQVNGGLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEACANKDASMMVVLGVSEESLLSLCQRTKNVWCANFNGGMQVVLAGIKDDLKALEPTLKEMGAKRVVFLEMSVASHCPFLEPMTFKFQELLEKSLKDKFHFEIISNATNEAYHNKAKAVELLSLQLTQPVRYQDCVKSNNGRVGVFFELGCGSVLKGLNKRLSNKPTISVGDNKGLDEAIEFLEEYV
>NZ_CP024952.1|WP_145727404.1|1473520_1474504_-|hypothetical-protein
MTYKELAKKVLEQAEKPLSVKGIWERACEMGSDKERNGTGKIPKDSFEIAIREDKKQFYVARKEKGTYYYWLKSREREIPPQEIPDAKEEDDEQSECSGTAKKQKTSFDERDLHPLLVKFLDKDPNFKLLCKTIRHEECKKGKGGECMWNYPDIVGVYFPYNKYKEETLKFLHHTGQEKHKLFSFELKKELSFSNLKESYFQAVSNSTWANEGYLVVFEEIEDKFLGELRRLNQSFGIEVIKLESEISNSKILLPAKEREIDIPTLNMLIEQSPKDFKPFMEKINKQIEKGLDTAVDMGEFFDEVLDDEAMQKHIEKHIEGKGIKAE
>NZ_CP024952.1|WP_145727412.1|1487571_1488957_-|outer-membrane-beta-barrel-protein
MKKSFKKLGFVSLATSSVLLGSMNATDLETYAALQKPSHVFGNYAEKDSGSGSDKDRHTASSGGTPSSTTPPAKKDETTGGTGGDHHTASAPTPSTSGVASQLVKDTTTVNNLKSVSVSGMNTTLSGVETMSQQSATIGNLLNSSTDLSSVIPNAQGLSSAFSALESAQNTLKGYLNSSSATIGQLTNGSNAVVGALDKAINQVDMALADLRATDTQKTQAVTLATTGSSTTTDAINFLNALKTNLMAQKDAFTNVHKNIQTAVAQAQATHTPSVINTNNYGQMYGVDAMAGYKWFFGKTKRFGFRSYGYYSYNHANLSFVGSQLGIMEGASQVNNFTYGVGFDALYNFYESKEGYNTAGLFVGFGLGGDSFIVQGESYLKSRMQICNNTAGCSVSMNTSYFQMPVEFGFRSNFSKHSGIEVGFKLPLFTNQFYKERGVDGSVDVFYKRNFSIYFNYMINF
>NZ_CP024952.1|WP_000755207.1|1488968_1489226_-|hypothetical-protein
MKKVFLGMALAFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPGANNNTPIDTSMFGSNQTAPAQETQSASKPDTKVNPSASWMKK
>NZ_CP024952.1|WP_000025111.1|1489655_1490714_-|peptide-chain-release-factor-1
MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLENIKENKELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQFE
>NZ_CP024952.1|WP_001273609.1|1490838_1491108_-|30S-ribosomal-protein-S20
MANHKSAEKRIRQTIKRTERNKFYKTKVKNIIKAVREAVAVNDVAKAQERLKIANKELHKFVSKGILKKNTASRKVSRLNASVKKIALA
>NZ_CP024952.1|WP_145727413.1|1491197_1492535_+|phosphoglucosamine-mutase
MKIFGTDGVRGKAGVKLTPMFVMRLGIAAGLYFKKHSQTNKILIGKDTRKSGYMVENALVSALTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNPFEDNGIKFFNSYGYKLKEEEERAIEEIFHDEELLHSSYKVGESIGSAKRIDDVIGRYIVHLKHSFPKHLNLQSLRIVLDTANGAAYKVAPVVFSELGADVLVINDEPNGCNINEQCGALHPNQLSQEVKKYRADLGFAFDGDADRLVVVDNLGNIVHGDKLLGVLGVYQKSKNALSSQAIVATSMSNLALKEYLKSQDLELKHCAIGDKFVSECMRLNKANFGGEQSGHIIFSDYAKTGDGLVCALQVSALVLESKLVSSVALNPFELYPQSLVNLNVQKKPPLESLKGYSALLKELDQLEIRHLIRYSGTENKLRILLEAKDEKLLESKMQELKEFFEGHLC
>NZ_CP024952.1|WP_145727414.1|1492528_1493002_+|lipoprotein-signal-peptidase
MLKTTKKSLLVFMGVFFLIFGADQAIKYAILEGFRYESLMIDIVLVFNKGVAFSLLSFLEGGLKYLQILLILGLFIFLMRQRELFKNHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFVFKQKQNKIKA
>NZ_CP024952.1|WP_000779223.1|1493347_1494064_+|urease-subunit-alpha
MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPIEANGKLVPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDRQADNESKKIALHRAKERGFHGAKSDDNYVKTIKE
>NZ_CP024952.1|WP_000724295.1|1494067_1495777_+|urease-subunit-beta
MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF
>NZ_CP024952.1|WP_140563281.1|1495967_1496555_+|acid-activated-urea-channel
MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIICNVVVITYSALNPTAPVEGAEDIAQVSHHLTNFYGPATGLLFGFTYLYAAINHTFGLDWRPYSWYSLFVAINAVPAAILSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGILTAWIPAWLLFIQHWV
>NZ_CP024952.1|WP_000583041.1|1496556_1497069_+|urease-accessory-protein-UreE
MIIERLIGNLRDLNPLDFSVDYVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEPNFKVSLASDFKVVMK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024952_1	1.1\|575726\|33\|NZ_CP024952\|CRT	575726-575758	33	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	465746-465778	9	0.727

1. spacer 1.1|575726|33|NZ_CP024952|CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 9, identity: 0.727

gtgtcgttattaaagctagtattgtcattaaaa	CRISPR spacer
ggggtacgtttaaagctattaatgtcattaaaa	Protospacer
* * ...  ********* ** ***********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage