CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024946	Helicobacter pylori strain B147 chromosome, complete genome	4 crisprs	cas3,cas2	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024946_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024946_1

558404-558509

Orphan

Consensus_repeat	Method
AAAAATAAGGATTTTAAAGCTTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024946_1

>merge|NZ_CP024946|1|558404-558509|CRISPRCasFinder
AAAAATAAGGATTTTAAAGCTTTCAGGCTTTTAGAATTCAAACAGCGTAATGTTTTTATCGCTTTAGTGCCTTGGTCTTATAAAAATAAGGATTTTAAAGCGTTCA

>NZ_CP024946|1|1|558404-558509|CRISPRCasFinder
AAAAATAAGGATTTTAAAGCTTTCA	GGCTTTTAGAATTCAAACAGCGTAATGTTTTTATCGCTTTAGTGCCTTGGTCTTAT
AAAAATAAGGATTTTAAAGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024946.1\|WP_145728358.1\|568230_569343_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP024946.1\|WP_145728357.1\|566044_568033_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP024946.1\|WP_145728348.1\|550493_551030_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|367115
NZ_CP024946.1\|WP_145728347.1\|550257_550551_-\|prokaryotic-metallothionein-family-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_000162257.1\|565495_565936_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|223850
NZ_CP024946.1\|WP_127943457.1\|552067_552814_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|223876
NZ_CP024946.1\|WP_145728349.1\|551026_552064_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|272912
NZ_CP024946.1\|WP_145728350.1\|552806_553289_-\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|235219
NZ_CP024946.1\|WP_001879542.1\|556040_556898_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024946.1\|WP_145728353.1\|556909_557851_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024946.1\|WP_002203573.1\|562058_562328_+\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|225350
NZ_CP024946.1\|WP_145728356.1\|562324_565168_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP024946.1\|WP_145729171.1\|560729_561152_+\|tRNA-threonylcarbamoyladenosine-biosynthesis-protein-TsaB	unknown	unknown	gnl\|CDD\|224135
NZ_CP024946.1\|WP_000991189.1\|565167_565503_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|129191
NZ_CP024946.1\|WP_145728355.1\|559769_560657_+\|UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase	unknown	unknown	gnl\|CDD\|273014
NZ_CP024946.1\|WP_000261712.1\|561205_562087_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|129295
NZ_CP024946.1\|WP_000664487.1\|553356_554367_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP024946.1\|WP_145728352.1\|555328_556051_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_145728351.1\|554367_555180_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|272969
NZ_CP024946.1\|WP_145728354.1\|559119_559773_+\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234791

Protein	Function_ID	Function_description	E-value
NZ_CP024946.1\|WP_145728358.1\|568230_569343_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.40956e-85
NZ_CP024946.1\|WP_145728354.1\|559119_559773_+\|septum-site-determining-protein-MinC	gnl\|CDD\|234791	PRK00556, minC, septum formation inhibitor; Reviewed.	2.73025e-96
NZ_CP024946.1\|WP_145728348.1\|550493_551030_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|367115	pfam02527, GidB, rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.	1.17165e-66
NZ_CP024946.1\|WP_000162257.1\|565495_565936_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|223850	COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown].	3.8362e-43
NZ_CP024946.1\|WP_127943457.1\|552067_552814_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|223876	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion].	1.88174e-80
NZ_CP024946.1\|WP_145728349.1\|551026_552064_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|272912	TIGR00113, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine. [Protein synthesis, tRNA and rRNA base modification].	1.08883e-162
NZ_CP024946.1\|WP_145728350.1\|552806_553289_-\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|235219	PRK04098, PRK04098, Sec-independent protein translocase subunit TatB.	4.25582e-58
NZ_CP024946.1\|WP_001879542.1\|556040_556898_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.88647e-10
NZ_CP024946.1\|WP_145728353.1\|556909_557851_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.92005e-28
NZ_CP024946.1\|WP_145728356.1\|562324_565168_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP024946.1\|WP_145729171.1\|560729_561152_+\|tRNA-threonylcarbamoyladenosine-biosynthesis-protein-TsaB	gnl\|CDD\|224135	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones].	9.87341e-19
NZ_CP024946.1\|WP_000991189.1\|565167_565503_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|129191	TIGR00082, Ribosome-binding_factor_A, ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype. [Transcription, RNA processing].	2.11723e-38
NZ_CP024946.1\|WP_145728355.1\|559769_560657_+\|UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase	gnl\|CDD\|273014	TIGR00325, UDP-3-O-_N-acetylglucosamine_deacetylase, UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP024946.1\|WP_145728357.1\|566044_568033_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP024946.1\|WP_000664487.1\|553356_554367_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP024946.1\|WP_002203573.1\|562058_562328_+\|YlxR-family-protein	gnl\|CDD\|225350	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription].	3.18787e-16
NZ_CP024946.1\|WP_145728351.1\|554367_555180_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|272969	TIGR00222, 3-methyl-2-oxobutanoate_hydroxymethyltransferase, 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A].	4.55387e-158
NZ_CP024946.1\|WP_000261712.1\|561205_562087_+\|homoserine-kinase	gnl\|CDD\|129295	TIGR00191, Homoserine_kinase, homoserine kinase. Homoserine kinase is part of the threonine biosynthetic pathway.Homoserine kinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054) [Amino acid biosynthesis, Aspartate family].	4.89988e-140

>NZ_CP024946.1|WP_145728353.1|556909_557851_+|outer-membrane-beta-barrel-protein
MKLKYWLVYLAFIIGLQATDYDNLEEENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEEYLERTYPKISSKKRKKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKNNININAPVSMISAKFGYQKYFVPYFGTRFYGDLLLGGGALKENALKQPVGSFFYVLGAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDKPNQNGRDLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYHNKENDERLLISANNQFKRSSFLLVNYAFIF
>NZ_CP024946.1|WP_001879542.1|556040_556898_+|outer-membrane-beta-barrel-protein
MCSKKIRNFILCFGFILSLHAEENTAQENTTEGNMIKENTPKDAPILLEEKRAQTLEFEENKEAKKNIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQRMAKNKSGFFIGVILGDIGVSAHSYEKFEPLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIKGYSQPNAFGLVLNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL
>NZ_CP024946.1|WP_145728352.1|555328_556051_+|hypothetical-protein
MGLKKYAILWSLMGFYAGLNALDYDTLDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF
>NZ_CP024946.1|WP_145728351.1|554367_555180_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSMQTAPIKKTTLNHLQAKKNQEKIIAITAYDALFAQIFDPLVDVILVGDSLNMSFFNQNDTLSASVKMMLYHTKAVCAGAKTPFIITDMPFGSYKDEKTALKNAIRVYKETQASAIKLEGGKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYKIKGKNEEQQKKLLEDALSLEEAGAGLLVLEGITTPIAQTITQKIKIPTIGIGSGKDCDGQILVWSDMLGFFDSFKPKFVREYLKGKELVQNAIKQYADDVKKGNFPNELESYH
>NZ_CP024946.1|WP_000664487.1|553356_554367_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPKTHALLKIPTLNPQTLF
>NZ_CP024946.1|WP_145728350.1|552806_553289_-|Sec-independent-protein-translocase-subunit-TatB
MFGMGFFEILVVLVVAIIFLGPEKFPQAVVDVVKFFRAVKKTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKITAENEIKSIQDLMQDYKQSLENNAPPNHSNKEVSNEEALNKEVSSDEPLKEVQLTTDNNAKEHDKEKEHV
>NZ_CP024946.1|WP_127943457.1|552067_552814_-|twin-arginine-translocase-subunit-TatC
MFEDLKPHLQELRKRLMVSVGTILVAFLGCFHFWKNIFEFVKNSYKGTLIQLSPIEGVMVAVKISFSAAIVISMPIIFWQLWLFIAPGLYKNEKKVILPFVFFGSGMFLMGAAFSYYVVFPFIIEYLATFGSDVFAANISASSYVSFFTRLILGFGVAFELPVLAYFLAKVGLITDASLKAYFKYAIVVIFIVAAIITPPDVVSQIFMALPLVGLYGLSILIAKMVNPAPKDNEEDNKNNAKENTKSE
>NZ_CP024946.1|WP_145728349.1|551026_552064_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MKEFDLESYDYHLPKELIASYPILPKEKAKLLVYERRSQKITHTTFEHVLDFFPKNALVVLNDTKVMKARLFGSKHAFLPSKTTEVFFHRFFKDNTALTQIKGKIKVGDKIFFDTNYHAEVLELLHNGQRLIAFYNHKTPLNQENILKLLEQYGHMPLPPYIKRADESLDAHEYQSVFAKHTGAVAAPTASLHFSQNTLEKILKDFKHAFLTLHVGAGTFLGVETKDIREHQIHTEVLHIPKKSQEILQESQEILCIGTTALRSVEYFKRLKNPNQESFECDIFLHLANPIQHANYLLTNFHLPKSSLLMLVSTMIGLEKTKEIYKIAIEKKYRFYSYGDGMLIL
>NZ_CP024946.1|WP_145728348.1|550493_551030_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNPLLQDYAYILLEWNQTHNLSGAKRLSELEPQITDALKPLEFIKDFKSCLDIGSGAGLPAIPLALEKPETQFILLEPRIKRAAFLNYLKSVLPLKNIEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEIACKDTECFVHQKRVYFYKSKESLC
>NZ_CP024946.1|WP_145728347.1|550257_550551_-|prokaryotic-metallothionein-family-protein
MLCASKACLFLQIKGKFMLRILIPLLIIVWILWRLFLRQKPHKDDPKDNHSYTQQTPKELEDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDKR
>NZ_CP024946.1|WP_145728354.1|559119_559773_+|septum-site-determining-protein-MinC
MDKNQYHCPYRASQTAFNERIVMLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIEPEVKAILLKHQLLFLETNRPLNGRHIKTISLKEETNHPTPNHSKAETKTTIYERHIRSGEEIYSANHLIFLGNIHNGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQIVFQNKIFSLKEVERLLVNKNIKIITKNDDILDIKEVL
>NZ_CP024946.1|WP_145728355.1|559769_560657_+|UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase
MKQTTINHSVELVGIGLHKGVLVKLVLEPLGENQGIVFYRSDLGVKLPLKPENIVDTKMATVLGKDNARISTIEHLLSAVHAYGIDNLKISVDNEEIPIMDGSALTYCMLLDEAGIKELDAPKKVMEIKQAIEIREGDKFVKIEPDSQLSLNFTIDFNHPVIAKQAHHFVFSKTAYKEQVAKARTFGFLQEVNYLRSIGLAKGGSLNNCIVLDENSILNKEGLRCEKEFVCHKILDAMGDLMVLGMPVMGKYTSFSGSHKLNSMLVKAILADAKNYEVLIATDPAKEFALQKAFA
>NZ_CP024946.1|WP_145729171.1|560729_561152_+|tRNA-threonylcarbamoyladenosine-biosynthesis-protein-TsaB
MYQNNFLGVSYTSKSKTSEALVEVFSQLFEDFKNHTLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALVHDFELYSTTGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIAPKDFMLPPFLEKDKFTQLNTPFYILPPI
>NZ_CP024946.1|WP_000261712.1|561205_562087_+|homoserine-kinase
MVVSVPATSANLGPGFDCLGLSLNLRNRFFIEPSSFHAVKLVGEGEGIPKFLTNNIFTKVFYEILKKHGNDGSFKFLLHNKVPITRGMGSSSAMIVGAVASAFAFLGFAFDRENIVNTALIYENHPDNITPAVFGGYNAAFVEKKKVISLKTKIPSFLKAVMVIPNRAISTKQSRHLLPKRYSVQESVFNLSHASLMTMAIVQGKWDLLRCCSKDRMHQYKRMQTYPVLFAIQKLALENNALMSTLSGSGSSFFNMCYEEDAPKLKQVLSKKFPKFRVAVLDFDNDGVLIEKD
>NZ_CP024946.1|WP_002203573.1|562058_562328_+|YlxR-family-protein
MMESLLRKTEIKIRMCVACRMRQPQKDLLRLKSFENQIMEFDGKGRSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNIITWIKERSIA
>NZ_CP024946.1|WP_145728356.1|562324_565168_+|translation-initiation-factor-IF-2
MSGMVDLKEFLAELGKTQKELKNVIEQAKDIGLELKTNSKMTPEEANKLYKYIVEGIKEQIQANQPTKNPEQDNKDDLNTAQTPKPLNKKVSKTPKKEETKSQPKPKKTKEKKKEAPTPIAKKKGGIEIVNTFENQTPPVENTPKVVSHSQIEKAKQKLQEIQKSREALNKLTQSNANNANSTNNANNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQEAKKAKKPSKPKPTPTAKNNKSHKIDFSDARDFKGNDIYDDETDEILLFDLHEQDNFNKEEEEKEARQNINDRVRVQRKNPLMNEIGIKRQSKKKRAFRNDSSQKVIQSAIAIPEEVRVYEFAQKANLNLADVIKTLFNLGLMVTKNDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKERPPVVTIMGHVDHGKTSLLDKIRDKRVAHTEAGGITQHIGAYMVEKNNKWVSFIDTPGHEAFSQMRNRGAQVTDIAVIVIAADDGVKQQTIEALEHAKAANVPVIFAMNKMDKPNVNPDKLKAECAELGYNPVDWGGEHEFIPVSAKTGDGIDNLLETILIQADIMELKAIEEGSARAVVLEGSVEKGRGAVATVIVQSGTLSVGDSFFAETAFGKVRTMTDDQGKSIQNLKPSMVALITGLSEVPPAGSVLIGVENDSIARLQAQKRATYLRQKALSKSTKVSFDELSEMVANKELKNIPVVIKADTQGSLEAIKNSLLELNNEEVAIQVIHSGVGGITENDLSLVSSSEHAVILGFNIRPTGNVKNKAKEYNVSIKTYTVIYALIEEMRSLLLGLMSPIIEEEHTGQAEVRETFNIPKVGTIAGCVVSDGVIARGIKARLIRDGVVVHTGEILSLKRFKDDVKEVSKGYECGIMLENYNEIKVGDVFETYKEIHKKRTL
>NZ_CP024946.1|WP_000991189.1|565167_565503_+|30S-ribosome-binding-factor-RbfA
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDNSLEKQLRLDAIFNEIAKGKDND
>NZ_CP024946.1|WP_000162257.1|565495_565936_+|ribosome-maturation-factor-RimP
MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEVISPLLDVCDFIQDAYILEVSSMGLERVLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKKVKTLFEW
>NZ_CP024946.1|WP_145728357.1|566044_568033_-|acetate--CoA-ligase
MQLDNDSEFAKKIFNPNRAFAKQSRIKNMCEYKDLVHEANEDYEHFWGELAKQKLTWFKPFDKVLNSDNAPFFKWFENGKINVSYNCIDRHLKDKKNKVAIIFEGEMGDYNVITYRKLHSEVNKTANLLKNEFNVKKGDRVIIYMPMIVESVYMMLACARIGAIHSIVFAGFSPEALRDRINDAQAKLVITADGTFRKGKPYMLKPALDKALENNACPSVEKALIVIRNAKEIDYVRGRDFVYNEMVNYQSDKCEPEMMDSEDPLFLLYTSGSTGKPKGVQHSSAGYLLWAQMTMEWVFDIRDNDNFWCTADIGWITGHTYVVYGPLACGATTLILEGTMSYPDYGRWWRMIEEYRVDKFYTSPTAIRMLHAKGENEPLKYNLESLKVLGTVGEPINPTAWKWFYEKIGNSKCSIVDTWWQTETGGHIISPLPGATPIRASCATLPLPGIHAEVLNEDGTKTKPGEQGFLCITKPWPSMVRNIWGDEKRYIDSYFSQIKLNGEYVYLSGDGAIVDENGYITIIGRTDDIVNVSGHRIGTAEVESAISKHEMVVECAVVGIPDTIKGEGLFAFVVLCDGAKCNLGESLELLKEMNHILSVEIGKIAKLDNVMYVPGLPKTRSGKIMRRLLKSIAKKEPITQDLSTLEDVNVVKEIMSIVQMEE
>NZ_CP024946.1|WP_145728358.1|568230_569343_+|metallophosphoesterase
MLISIAFLLVLCLLNYSSFRMLKSFLTLKKISQYAYLGFFILLSAGETAFAFYRNIMPSHLFVLTSACSFVSFIVFILSLSFYGFSYSIEKIDFLHSRRKSLKNFLKLGFYLALLGYFWRGFYEGLARPKIKETPIYLDKLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEVDMVLIGGDLVDESIEKVKSFLLPLNNLKSTHGTFYVPGNHEYYHGIEPILSFLDTLNLTILGNECVHLGGINLCGVYDYFARKRQNFAPDIDKALKKRDSSKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLYGLYKHSPTTQIYVSSGAGYWGVPLRFLAPSEIAYLRLLPKNQA

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Crispr_ID: NZ_CP024946_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024946_2

809661-809803

Orphan

Consensus_repeat	Method
TTTAATGGCGGATCGTTTAATTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP024946_2

>merge|NZ_CP024946|2|809661-809803|CRISPRCasFinder
TTTAATGGCGGATCGTTTAATTTCAACCATGCAGAGCAGACAGACGCTTTTAATAACAACTCGTTTAATGGCGGATCGTTTAGTTTTAACGCCAAGCAAGTGGATTTTAATCATAACTCGTTCAATGGGGGCGTGTTTAATTT

>NZ_CP024946|2|2|809661-809803|CRISPRCasFinder
TTTAATGGCGGATCGTTTAATTT	CAACCATGCAGAGCAGACAGACGCT
TTTAATAACAACTCGTTTAATGG	CGGATCGTTTAGTTTTAACGCCAAGCAAGTGGATTTTAATCATAACTCG
TTCAATGGGGGCGTGTTTAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024946.1\|WP_012552438.1\|817137_817638_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_145728492.1\|800510_801533_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP024946.1\|WP_127986634.1\|806786_807356_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024946.1\|WP_145728496.1\|817893_818562_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP024946.1\|WP_145728490.1\|799173_799830_+\|3-methyladenine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|184390
NZ_CP024946.1\|WP_000885496.1\|797523_799056_+\|flagellin-A	unknown	unknown	gnl\|CDD\|237146
NZ_CP024946.1\|WP_145728498.1\|819210_821181_-\|DNA-ligase-(NAD(+))-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP024946.1\|WP_145728503.1\|825641_826946_+\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225843
NZ_CP024946.1\|WP_078257611.1\|802986_803691_+\|efflux-RND-transporter-periplasmic-adaptor-subunit-HefB	unknown	unknown	gnl\|CDD\|273776
NZ_CP024946.1\|WP_145728502.1\|824584_825583_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_CP024946.1\|WP_145728488.1\|794210_795512_-\|hemolysin	unknown	unknown	gnl\|CDD\|206779
NZ_CP024946.1\|WP_145728497.1\|818771_819107_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_145728493.1\|801542_802976_+\|efflux-RND-transporter-outer-membrane-subunit-HefA	unknown	unknown	gnl\|CDD\|224455
NZ_CP024946.1\|WP_001047002.1\|826998_827520_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NZ_CP024946.1\|WP_145728494.1\|803703_806790_+\|efflux-RND-transporter-permease-subunit-HefC	unknown	unknown	gnl\|CDD\|334294
NZ_CP024946.1\|WP_145728489.1\|796463_797360_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP024946.1\|WP_145728499.1\|821257_822199_+\|response-regulator	unknown	unknown	gnl\|CDD\|223905
NZ_CP024946.1\|WP_145728491.1\|799826_800444_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_145728500.1\|822233_823967_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP024946.1\|WP_145728501.1\|823983_824559_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711

Protein	Function_ID	Function_description	E-value
NZ_CP024946.1\|WP_145728492.1\|800510_801533_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP024946.1\|WP_127986634.1\|806786_807356_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.97426e-08
NZ_CP024946.1\|WP_078257611.1\|802986_803691_+\|efflux-RND-transporter-periplasmic-adaptor-subunit-HefB	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.51979e-24
NZ_CP024946.1\|WP_145728490.1\|799173_799830_+\|3-methyladenine-DNA-glycosylase	gnl\|CDD\|184390	PRK13913, PRK13913, 3-methyladenine DNA glycosylase; Provisional.	5.02995e-132
NZ_CP024946.1\|WP_000885496.1\|797523_799056_+\|flagellin-A	gnl\|CDD\|237146	PRK12584, PRK12584, flagellin A; Reviewed.	0
NZ_CP024946.1\|WP_145728498.1\|819210_821181_-\|DNA-ligase-(NAD(+))-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP024946.1\|WP_145728503.1\|825641_826946_+\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	6.83444e-40
NZ_CP024946.1\|WP_145728496.1\|817893_818562_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.74025e-41
NZ_CP024946.1\|WP_145728502.1\|824584_825583_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	8.65884e-69
NZ_CP024946.1\|WP_145728488.1\|794210_795512_-\|hemolysin	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	2.90063e-44
NZ_CP024946.1\|WP_145728493.1\|801542_802976_+\|efflux-RND-transporter-outer-membrane-subunit-HefA	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.13243e-31
NZ_CP024946.1\|WP_001047002.1\|826998_827520_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.29704e-94
NZ_CP024946.1\|WP_145728494.1\|803703_806790_+\|efflux-RND-transporter-permease-subunit-HefC	gnl\|CDD\|334294	pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.	0
NZ_CP024946.1\|WP_145728489.1\|796463_797360_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.92566e-19
NZ_CP024946.1\|WP_145728499.1\|821257_822199_+\|response-regulator	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	5.324e-32
NZ_CP024946.1\|WP_145728500.1\|822233_823967_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP024946.1\|WP_145728501.1\|823983_824559_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	3.59273e-65

>NZ_CP024946.1|WP_127986634.1|806786_807356_+|outer-membrane-beta-barrel-protein
MKKIVFILALWVGLSGAFEPKKSHIYFGAMVGLAPIKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHRIELGAKIPFSNTRNSFKNSYFLESVFIHAAYSYAF
>NZ_CP024946.1|WP_145728494.1|803703_806790_+|efflux-RND-transporter-permease-subunit-HefC
MYKTAINRPITTLMFALAIVFFGVMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESKVTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFDDSNIKKPSINKFDTDSQAIISLFVSSSSVPATTLNDYAKNTIKPMLQKINGVGGVQLNGFRERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADVEKIQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHIQAISPSYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTRLLQWVLNHKLIIFIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDYMTQKSKIFQKAIEKHAEVEFTTLQVGYGTTQNPFKAKIFVQLKPLKERKKEHQLGQFELMSALRKELRSLPEAKGLDTINLSEVTLIGGGGDSSPFQTFVFSHSQEAVDKSVENLKKFLLESPELKGKVESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDIIIRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLADPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANEERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKRFYQNQKALE
>NZ_CP024946.1|WP_078257611.1|802986_803691_+|efflux-RND-transporter-periplasmic-adaptor-subunit-HefB
MMRKILIGLFLSFLSMEAGEKVYAIFNVKAMQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTILRAPFDGVIASKNIQVGEGVSANSTVLLRLVSHARKLVIEFDSKYINAVKVGDTYTYSIDGDSNQHEAKITKIYPTVDENTRKVSAEALLSKPMAVGLFGDGFIQTK
>NZ_CP024946.1|WP_145728493.1|801542_802976_+|efflux-RND-transporter-outer-membrane-subunit-HefA
MKTIIRYASLWGLCVTLTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLSSPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSNVNNVKEKSATYRSTVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDIQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNLYPGQQNTAGVTATLNIFDDIGLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH
>NZ_CP024946.1|WP_145728492.1|800510_801533_+|uroporphyrinogen-decarboxylase
MMIFIDACFRKETPYTPIWMMRQAGRYLSEYQESRKKAGSFLELCKNSDLATEVTLQPVEILGVDAAILFSDILVVPLEMGLNLEFIPKKGPHFLETITDLKSVESLKVGAYKQLNYVYDTISQTRQKLSKEKALIGFCGSPWTLATYMIEGEGSKSYAKSKKMLYSEPEVLKALLEKLSLELIEYLSLQIQAGVNAVMIFDSWASALEKEAYLEFSWDYLKKISKELKKRYTHIPVILFPKGIGAYLDSIDGEFDVFGVDWGTPLESAKKILGGKYVLQGNLEPTRLYDKNALEEGVEKILKVMGNQGHIFNLGHGMLPDLPRENAKYLVQLVHAKTRR
>NZ_CP024946.1|WP_145728491.1|799826_800444_+|hypothetical-protein
MIFRFFLILSLLKGVLLAKKDLNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKDRPPILMDKTYHDASLGFQAGYILKKNALLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDKYQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSKFSKAFGTPRLNIYSVGITFTFYDFTRFLG
>NZ_CP024946.1|WP_145728490.1|799173_799830_+|3-methyladenine-DNA-glycosylase
MLDSFEILKALKSLDLLKNAPSWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVTREWLLDQKGVGKESADAILCYVCAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNAALALYENTISLAQLYARFHGKIVEFSKQKLELKL
>NZ_CP024946.1|WP_000885496.1|797523_799056_+|flagellin-A
MAFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSLGQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTSDVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLLT
>NZ_CP024946.1|WP_145728489.1|796463_797360_-|ABC-transporter-ATP-binding-protein
MQTLRDTIKNIPLRTFVLLYKSSPKRVVLASITVLFIGIIPSLNILVMIRLIDIVVDLLQNHTHFEYSLLLPTLLLWGALLFLTHVFSGISSSLQTIIAEQFSISIITQLANKLTKVKNLSFFEDKDHTIKLNAIHNGLYIRPLNYVSNLFFNLQRIIGLVSLFGILFSISIYLPFIMIFATMPCIFISNHIAKKHSASIDKLQDKKESIQNYLYSGLDNQKNKDNLLFNFMLNFHHKFIENKELYINHFVKIAQKNLMLTIYADILITILSVVLFFLMVFIILSKSCGGNCWIYPSV
>NZ_CP024946.1|WP_145728488.1|794210_795512_-|hemolysin
MFGNKQLQLQISQKDSEIAELKKEVNLYQSLLNLCLHEGFVGIKNNKVVFKSGNLASLNNLEEQSVHFKENAESVDLQGVSYSLKSQNIDGVQYFSLAKKTGGVGEYHKSDLFKTFCASLKEGLENAQESMQYFHQETGLLLNAAKNGEEHSTEGLGTVNKTGQDIESLYEKMQNATSLADSLNQRSNEITQVISLIDDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKATKEIAVVVKSMQQEANDIQTNTHDINSIVSSIKGDVEELKSTVKNNMIVAQAAKYTIYNINNRVFCGLAKLDHVVFKNNLYGMVFGLNSFDITSHKSCRLGKWYYEGAGKENFSNTSGYRALESHHASVHAEANDLVKAVQEDHITDLKYLEHKVHLMEDSAKHVRENIDKMFYEKQDELNKIIEKIQKGE
>NZ_CP024946.1|WP_012552438.1|817137_817638_-|hypothetical-protein
MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYALNIITILNFKALILGFVSIFSSALFCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPNIGQLFIKTSIFYYLNQLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR
>NZ_CP024946.1|WP_145728496.1|817893_818562_-|ATP-binding-cassette-domain-containing-protein
MFKNALNIQDFSFKNHTSTAIIGTNGAGKSTLINTILGIREDYNFKAQNNNIPYHDNVIPQRKQLGVVSNLFNYPPGLNANDLFKFYQFFHKNCTPNLFEKNLLNKTYEHLSDGQKQRLKIDLALSHHPQLIIMDEPETSLEQNALIRLSNLISLRNTQQLTSIIATHDPIVLDSCEWVLFLKNGNIAQYKPLNSILKSVAKTFNFKEKPTTKDLLALLKDI
>NZ_CP024946.1|WP_145728497.1|818771_819107_-|hypothetical-protein
MMEHHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERRSSFNVSLSPSLLAEIEEIEYEEKTSKERRINHNVLLSPSFMAKVDEYMKEKGFPNRSLLFEKALEFYMLKHP
>NZ_CP024946.1|WP_145728498.1|819210_821181_-|DNA-ligase-(NAD(+))-LigA
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQANSPTQKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYPSASFVCSPKLDGVSLNLLYQHGKLVSATTRGNGLEGELVSANAKHIANIPHAIAYKGEIEIRGEVIISKKDFDALNQERLNANEPLFANPRNAASGSLRQLDSKITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIEKKNIMLNDRVVIIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEAEFLEMEGFGVEMARSLVNFYASNQEFIRSLFDLLNPKNSDMTEEKQESSSVFNNKTIVLTGTLSKPRQEYAQMLENLGAKISSSVSTKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKELD
>NZ_CP024946.1|WP_145728499.1|821257_822199_+|response-regulator
MVRGIDKTTSLHLNNEAQFLCFRLDGEKDAQLYGLNIFKIREIIHYDGEVTEILGGSDGMMLGFLSVRGESIPLVDVKRWLHYNASDLGRNLKECSVKDEHNLVIVCHFSNHSIALKVLKIERIIHKNWTEISAGDKQGINEEGKLSAITRFDEERVVQILDVEKIVSDVFPSLKDLDDLTLRCIEAIQSQKLILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVISGFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILEIHEMLRKTLS
>NZ_CP024946.1|WP_145728500.1|822233_823967_+|aspartate--tRNA-ligase
MRSHFCTEISEKDVGKTIKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPSSKAYEKALEVRSEFVLVAKGKARLRGPGLENPKLKTGKIEIVLEELVIENKSATPPIEIGNKNVNEDLRLKYRYLDLRSLNAYEIFKLRSEVALIARNALAQKGFLEIETPILSKTTPEGARDYLVPSRVHEGEFFALPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDAEMSFCSENDVMGVVEDLLQEIFKAIGHTISTPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDCFMDSSNAIFSNIAQDPKNKRIKALNVKGADAIFSRSVLKELEEFVRQFGAQGLAYLQIKEDGIKGPLVKFLSEKGLKNILEKTSAKTGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLIDKDALNFLWVVNFPMFEKTENGYHAAHHPFTMPKNIECEDIEEIEAHAYDVVLNGVELGGGSIRIHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIGFDRLIMLMTKSSSIRDVIAFPKTQKASCLLTDAPSPINEEQLRELHIRLRK
>NZ_CP024946.1|WP_145728501.1|823983_824559_+|adenylate-kinase
MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLEIVVETILSAIKSSSKRIILIDGYPRSVEQMQALDKELNAQNEVVLKSVIEVKVSENTAKERVLGRSRGADDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYKAIDGERSIEEIVNEMQKYILSFAN
>NZ_CP024946.1|WP_145728502.1|824584_825583_+|glycosyltransferase-family-25-protein
MISVYIISLKESQRRLDTEKLVLESNEKFKGCCVFQIFDAISPKHEDFEKLLQELYDAQSLLQSDWYHSYVGAGLTLPELGCYLSHYLLWKECVKTNQPVVILEDDVVLESNFMQALEDCLKSPFDFVRLYGCYWYYHETKFHVLPKEFVFPPFDYPFKNNPILEKFKKFFDVSRFLNLSTNKVIHYILKKIQKSYYATHEKEAFFLEHFYLTSVYVASTAGYYLTPKGAKTFIDATERFKIIEPVDMFMDNSAYHDMANFTYVPCPVSLSEHSLDSTIQKPQKKSLKFYPFPPKKSTFKNLFYYSINAKKRLKAFHKYSKQYAPLKTPKEV
>NZ_CP024946.1|WP_145728503.1|825641_826946_+|lipopolysaccharide-biosynthesis-protein
MTQIYIISLKESQRRLDTEKLVLESNEKFKGRCVFQIFDAISPKHEDFEKFIQELYNSSNLLKSDWFHSDYCYQELLPQEFGCYLSHYLLWKECVKTNQPIVILEDDVALESNFMQALEDCMKSPFDFVRLYGHYWGGHKTNLHSLPIYTETEEAKASIEKTPIENHEVTPPPPNPAQDTQQDCIIETQQDPKELPEPCKIAPQKISFNQVVFKKIKIKLNRFIGSILARTEVYKNLVAKYDDLTGKYDELTGKYDELTGKYDELTGKYDELTGKYDELTGKYESLLAKEANIKETFWESRTDNEKEALFLEHFYLTSVYVATTAGYYLTPKGAKTFIEATERFKIIEPVDMFINNPTYHDVANFTYLPCPISLNKHAFNSTIQNAKKPDISLKPPKKSYFDNLFYHKFNARKCLKAFRKYSRRYAPLKTHKES
>NZ_CP024946.1|WP_001047002.1|826998_827520_+|inorganic-diphosphatase
MNLDQLEVSHDADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLLALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG

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Crispr_ID: NZ_CP024946_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024946_3

1096852-1096945

Orphan

Consensus_repeat	Method
AATTTTCAGTAAGAAAGGCTTTTTAAGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024946_3

>merge|NZ_CP024946|3|1096852-1096945|CRISPRCasFinder
AATTTTCAGTAAGAAAGGCTTTTTAAGCTTCTTAAAATTTTACCTATTTACACATTCTAACCACAATTTTCAGTAAGAGAGGCTTTTTAAGCTT

>NZ_CP024946|3|3|1096852-1096945|CRISPRCasFinder
AATTTTCAGTAAGAAAGGCTTTTTAAGCTT	CTTAAAATTTTACCTATTTACACATTCTAACCAC
AATTTTCAGTAAGAGAGGCTTTTTAAGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024946.1\|WP_001221173.1\|1087983_1088457_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|366907
NZ_CP024946.1\|WP_145728666.1\|1101145_1101913_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP024946.1\|WP_145728667.1\|1101912_1102893_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP024946.1\|WP_145728664.1\|1093955_1095416_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|367301
NZ_CP024946.1\|WP_000003589.1\|1109891_1110620_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|272891
NZ_CP024946.1\|WP_145728668.1\|1102885_1103734_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP024946.1\|WP_145728671.1\|1105395_1107582_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|375731
NZ_CP024946.1\|WP_001206523.1\|1082442_1082658_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_145728672.1\|1108537_1109650_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|272892
NZ_CP024946.1\|WP_145728660.1\|1085607_1087983_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP024946.1\|WP_000335478.1\|1109655_1109892_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|223375
NZ_CP024946.1\|WP_145728669.1\|1104472_1104733_-\|YafQ-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|379750
NZ_CP024946.1\|WP_000247381.1\|1083762_1085280_-\|catalase	unknown	unknown	gnl\|CDD\|163712
NZ_CP024946.1\|WP_145728665.1\|1095416_1096814_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP024946.1\|WP_145728659.1\|1082742_1083618_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_145728662.1\|1091441_1091993_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|129193
NZ_CP024946.1\|WP_145728661.1\|1088588_1089314_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224349
NZ_CP024946.1\|WP_145728670.1\|1104713_1105091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_000973846.1\|1110732_1110861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_145728663.1\|1092018_1093863_-\|DUF342-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024946.1\|WP_001221173.1\|1087983_1088457_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|366907	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC. This entry includes endodeoxyribonucleases found in bacteria, such as RuvC. RuvC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli RuvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices. The Escherichia coli RuvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination. RuvC protein (EC:3.1.22.4) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo.	1.64911e-81
NZ_CP024946.1\|WP_145728666.1\|1101145_1101913_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.0678e-99
NZ_CP024946.1\|WP_145728660.1\|1085607_1087983_+\|TonB-dependent-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	6.11458e-44
NZ_CP024946.1\|WP_145728664.1\|1093955_1095416_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|367301	pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologs of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.	1.2801e-116
NZ_CP024946.1\|WP_000003589.1\|1109891_1110620_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|272891	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB. A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair].	1.32809e-108
NZ_CP024946.1\|WP_145728668.1\|1102885_1103734_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.52099e-91
NZ_CP024946.1\|WP_145728671.1\|1105395_1107582_-\|outer-membrane-protein	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	2.3094e-113
NZ_CP024946.1\|WP_145728672.1\|1108537_1109650_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|272892	TIGR00075, Hydrogenase_isoenzymes_formation_protein_HypD, hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea. [Protein fate, Protein modification and repair].	0
NZ_CP024946.1\|WP_145728667.1\|1101912_1102893_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.52859e-66
NZ_CP024946.1\|WP_000335478.1\|1109655_1109892_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|223375	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	5.13143e-32
NZ_CP024946.1\|WP_145728669.1\|1104472_1104733_-\|YafQ-family-addiction-module-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	3.23592e-31
NZ_CP024946.1\|WP_000247381.1\|1083762_1085280_-\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP024946.1\|WP_145728665.1\|1095416_1096814_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP024946.1\|WP_145728661.1\|1088588_1089314_+\|NYN-domain-containing-protein	gnl\|CDD\|224349	COG1432, COG1432, Uncharacterized conserved protein [Function unknown].	1.32506e-27
NZ_CP024946.1\|WP_145728662.1\|1091441_1091993_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|129193	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair].	1.15021e-67

>NZ_CP024946.1|WP_145728665.1|1095416_1096814_+|cysteine--tRNA-ligase
MFIYDTKSKQKVPFEPLVKNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYEVVLVRNFTDIDDKIINKALKENKSIQELSSIYIESYTRDLNALNVKKPNLEPKASEYLDAMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTNAPYQIDIHAGGADLLFPHHENEACQTRCAFGVEIAKYWMHNGFVNINNEKMSKSLGNSFFVKDALKNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFVEELLGIGFKDPSAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREELLQQKIALMDTPQGTIWEKLF
>NZ_CP024946.1|WP_145728664.1|1093955_1095416_+|murein-biosynthesis-integral-membrane-protein-MurJ
MLKKIFLTNSLGILCSRIFGFLRDLMMANILGAGVYSDIFFVAFKLPNLFRRIFAEGSFSQSFLPSFIRSSIKGSFASLVGLIFCGVLFIWCLLVALNPLWLTKLLAYGFDEETLKLCAPIVAINFWYLLLVFITTFLGTLLQYKHSFFASAYSTSLLNVCMILALFISKEKTHLEALYYLSYGVLLGGVAQILLHFYPLVKLGLLNLLFKGLLSFKTKNAAKKKYRSKRAKRDLKAFFKQFLPSVLGNSSAQIASFLDTTIASFLASGSVSYLYYANRVFQLPLALFAIAISTALFPSIAIALKNNQQDLILQRLQKAWFFLVGVLLLYSIGGIMLSKEITELLFERGQFSPKDTLITSQVFSLYLLGLLPFGLTKLFSLWLYAKLEQKKAAKISLISLFLGLAASLSLMPLLGVLGLALANSLSGLFLFVLTIKAFGFQLFLGIIKNLKSWLVILFLACVEILLLLAFKSWVTHLYLFYYFQGF
>NZ_CP024946.1|WP_145728663.1|1092018_1093863_-|DUF342-domain-containing-protein
MSLERFAPIKVERCKDIQKELKKAAAENKLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEEEYYEKKELTLYQTHDIKIKSNAYKHFFEVKVDEDLSKIEIILDECFIVLDTEEYYQEMFAYIKECLAFQGVVFRHLSQMYENLKTELRKHKKEAQNKRFVLYASSTFIPNAEEQSHFLLEEEYLPTHTIFLSDQKESLVKENNYIAKENQKVACVNYPKQGRDGRNLKGLYIELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSNQNFIFKNGIKSIETPNLLGGVESGLVLEIQAKDELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPESYVYANKARITNHKGVCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKEIALEKLKSDNKLYFSKQCWIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQHQSLNHLVKNHQTIMEKLKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHASITTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVDVIYEDHKIKKIPKSAIKG
>NZ_CP024946.1|WP_145728662.1|1091441_1091993_-|Holliday-junction-branch-migration-protein-RuvA
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLETGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENKPARNEVFLALESLGFKSTEINQVLKTLKPNLSIEAAIKEALQQLRS
>NZ_CP024946.1|WP_145728661.1|1088588_1089314_+|NYN-domain-containing-protein
MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFEHALCDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNWA
>NZ_CP024946.1|WP_001221173.1|1087983_1088457_-|crossover-junction-endodeoxyribonuclease-RuvC
MRILGIDPGSRKCGYAIISHTSNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRLKLH
>NZ_CP024946.1|WP_145728660.1|1085607_1087983_+|TonB-dependent-receptor
MFLRSYPKLRYALCFPLLAETCYSSDHTLGKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFHPTQADKEPGTPSEQNNALIKMNGYLSDRDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDGAQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRLDFTLYTSIRNAQFDPLFDPNGVYAKFPTSLASAWEKENYPCVEGGYCTPSFSDVDKPSSQPRNLFLNNTGLNLKVAHVIDEATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPHKIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTNLNQAIRIYGYEVGGTFRYKGVSLNVGISRTWPTTRGYLMADSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSQLGLVHMHKPGYGVSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAIKRAIAEPGFNARFEVAYKW
>NZ_CP024946.1|WP_000247381.1|1083762_1085280_-|catalase
MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNPDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFETMQGVKHLTNEEAAEVRKYDPDSNQRDLFDAIARGDFPKWKMSIQVMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKERLYDTIGGSLAHVTHKEIVDKQLEHFKKADPKYAEGVKKALEKHQKMMKDMHAKDMHHMKKKK
>NZ_CP024946.1|WP_145728659.1|1082742_1083618_-|twin-arginine-translocation-signal-domain-containing-protein
MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAERTSLFIPMPSVVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLPWFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHKEVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
>NZ_CP024946.1|WP_001206523.1|1082442_1082658_-|hypothetical-protein
MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEVFYYFNFPLWLNLFLGQTIGAVIFFKLDKLIFSKK
>NZ_CP024946.1|WP_145728666.1|1101145_1101913_-|ATP-binding-cassette-domain-containing-protein
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNFVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSALYDTPLEAIWHDNKLVVYAL
>NZ_CP024946.1|WP_145728667.1|1101912_1102893_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MLKTYHIALACVILAVLVLLFGGESLSLEEWKEVCLNVKNHFLHNEELSSLSIIILEIRLPRVILALLVGASLSGSGVVMQTIFRNPLVDPFLLGISSGAMLGVAMAIAVVESNIAILAFFGAILASLAVLAMNRVLGNSVLSLVLSGVVLSAFLSALAGAIKFFVIPQKAQAIVVWLLGSLSLSSYKDCLIAFIGLSLGFIPLFLLRWRINLLSLSDAQSLSLGINPVLLRSLCLVCVSVASALAVSVSGTIGWIGLVIPHVARLFFGANLQKLLLSSLLMGAFFLLLADVVAKTITPYDLPVGIATSVLGAPFFLWLLFRTRGV
>NZ_CP024946.1|WP_145728668.1|1102885_1103734_-|SDR-family-NAD(P)-dependent-oxidoreductase
MGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCESVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFENENGFYALEVDAAKTFYASVYQKALSAKAVAQKIVFLSMSQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA
>NZ_CP024946.1|WP_145728669.1|1104472_1104733_-|YafQ-family-addiction-module-toxin
MLKLNLKKSFQKDFDKLLLNGFDDSVLKEVILRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVCLVKDDELILLRLGSHSELF
>NZ_CP024946.1|WP_145728670.1|1104713_1105091_-|hypothetical-protein
MPNTTTKKDYTKYSEKQLFNLIHQLEQKIKKMQNDRASFKEKMAKELEKRDQNFKDKIGALNELLQKISQAFDDKRDCCLGRKIPNIQTQQAMRDALNKETDLIVEDFSSYSDERKKALGVKTQP
>NZ_CP024946.1|WP_145728671.1|1105395_1107582_-|outer-membrane-protein
MKKHILSLTLGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVKNTKGIQELSDNYEKLNNLLNSYSTLNTLIKLSADPSAVSGAINNLNAGATGLLKEKTNSPAYQAVSLALNAAVGLWNTIGYAVMCGNGNGTGSGPGSVVFNEEPGQKSTAITCNRFESTGPGKSMSIDEFKKLNEAYQIIQQALKNQSGFPELGSNGTEVKVNYTYECKQTSNINGGVNQFCQKNGSSGSNSTSTQTTNQDGVTITTTYNDHKATVNFNITNNAQELLNQAANIMQVLNTQCPLVRSMYNENVPGGGQPWSLSTSGDACQIFQQEFSQVTSMIKNAQEIVAQSKIANANQNAEIHNPSNFNPFTDASFAQDMLKNARAQAEMFNLAEQVKKNLEVMQNNNNVIIDGKATNFVSAFLATCKVDGTLPTAGVTSNTWGAGCAYVGETITALNNSIAHFGTQEQQIEQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNAVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP024946.1|WP_145728672.1|1108537_1109650_-|hydrogenase-formation-protein-HypD
MSVDHLISPFRDKQTLLVLSNAIKKLAFKLEKKLVIMEVCGGHTHSIMKYGLLDLMPNNLEFVHGPGCPVCVMPRARLDEAYELAMIKDSIILSLGDMMKVPGSYGSLIQAREKGLDARFLYSPMQALEIAKENPHKKVIYIAIGFETTTPMTASVLLNTKKEKINNLFFHTNHILVPPSVSAILKDPACQINALLAPSHVSVISGAQIYSPLVDRFKLPIIVSGFEPVDILESVLMLLKQALNKEAKLEIQYKRAVSYEGNVKAQELVNACMEVRENFEWRGLGNIKHSALKLKEAFASYDAEEVFKEHLSHKTSKENKACKCAEILKGIAKPPDCSLFATTCTPQNPIGSCMVSSEGACAAYYRYKRV
>NZ_CP024946.1|WP_000335478.1|1109655_1109892_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPSKVIAINNNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE
>NZ_CP024946.1|WP_000003589.1|1109891_1110620_-|hydrogenase-nickel-incorporation-protein-HypB
MSEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHSF
>NZ_CP024946.1|WP_000973846.1|1110732_1110861_-|hypothetical-protein
MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSDDKGLG

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Crispr_ID: NZ_CP024946_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024946_4

1137939-1138078

Orphan

I-B

Consensus_repeat	Method
TTTAATAACAACACCTTCAATCAAGGGACTTATAACTTTAATA	PILER-CR
TTCAATCAAGGGACTTATAATTTTAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP024946_4

>merge|NZ_CP024946|4|1137939-1138078|PILER-CR,CRISPRCasFinder
CTTCAATCAAGGGACTTACCACTTTAATAGCACTCAATCTACTTTTAATAACAGCGCTTTCAATCAAGGGACTTATAATTTTAATGACAACGCCAGCTTTGATAACGACACCTTCAATCAAGGGACTTATAACTTTAATA

>NZ_CP024946|4|1|1137939-1138078|PILER-CR
CTTCAATCAAGGGACTTACCACTTTAATAGCACTCAATCTACTTTTAATA	ACAGCGCTTTCAAT
CAAGGGACTTATAATTTTAATGACAACGCCAGCTTTGATAACGACACCTT	CAATC
AAGGGACTTATAACTTTAATA

>NZ_CP024946|4|4|1137940-1138077|CRISPRCasFinder
TTCAATCAAGGGACTTACCACTTTAAT	AGCACTCAATCTACTTTTAATAACAGCGCT
TTCAATCAAGGGACTTATAATTTTAAT	GACAACGCCAGCTTTGATAACGACACC
TTCAATCAAGGGACTTATAACTTTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024946.1\|WP_145728681.1\|1123111_1124665_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP024946.1\|WP_001115881.1\|1145513_1145720_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP024946.1\|WP_145728686.1\|1135247_1135940_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP024946.1\|WP_000041791.1\|1150787_1151447_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024946.1\|WP_064782581.1\|1126966_1128511_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP024946.1\|WP_145728680.1\|1120538_1122566_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP024946.1\|WP_145728692.1\|1148521_1149064_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP024946.1\|WP_145728689.1\|1144342_1145446_+\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NZ_CP024946.1\|WP_145729216.1\|1119395_1120535_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223897
NZ_CP024946.1\|WP_145728683.1\|1128756_1131198_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP024946.1\|WP_145728694.1\|1149987_1150791_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP024946.1\|WP_001099607.1\|1145878_1146460_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP024946.1\|WP_145728682.1\|1124686_1126279_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP024946.1\|WP_145728684.1\|1131455_1131887_-\|Sua5-YciO-YrdC-YwlC-family-protein	unknown	unknown	gnl\|CDD\|376519
NZ_CP024946.1\|WP_145728691.1\|1147540_1148521_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP024946.1\|WP_145728690.1\|1146456_1147602_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NZ_CP024946.1\|WP_145728687.1\|1136081_1137080_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP024946.1\|WP_145728693.1\|1149079_1149991_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP024946.1\|WP_145728685.1\|1131891_1135149_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP024946.1\|WP_145728695.1\|1151450_1152053_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792

Protein	Function_ID	Function_description	E-value
NZ_CP024946.1\|WP_145728681.1\|1123111_1124665_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.08405e-54
NZ_CP024946.1\|WP_001115881.1\|1145513_1145720_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	2.46126e-26
NZ_CP024946.1\|WP_145728686.1\|1135247_1135940_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.92598e-52
NZ_CP024946.1\|WP_064782581.1\|1126966_1128511_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	3.29915e-179
NZ_CP024946.1\|WP_145728680.1\|1120538_1122566_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	3.09208e-135
NZ_CP024946.1\|WP_145728692.1\|1148521_1149064_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	6.57706e-105
NZ_CP024946.1\|WP_145728689.1\|1144342_1145446_+\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.46978e-48
NZ_CP024946.1\|WP_145729216.1\|1119395_1120535_+\|N-6-DNA-methylase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.40081e-53
NZ_CP024946.1\|WP_145728683.1\|1128756_1131198_-\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	4.46263e-36
NZ_CP024946.1\|WP_145728694.1\|1149987_1150791_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	4.17228e-126
NZ_CP024946.1\|WP_001099607.1\|1145878_1146460_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	6.20583e-98
NZ_CP024946.1\|WP_145728682.1\|1124686_1126279_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.39279e-53
NZ_CP024946.1\|WP_145728684.1\|1131455_1131887_-\|Sua5-YciO-YrdC-YwlC-family-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	0.000180288
NZ_CP024946.1\|WP_145728691.1\|1147540_1148521_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP024946.1\|WP_145728690.1\|1146456_1147602_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	1.17261e-136
NZ_CP024946.1\|WP_145728687.1\|1136081_1137080_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	4.13804e-161
NZ_CP024946.1\|WP_145728693.1\|1149079_1149991_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.91056e-75
NZ_CP024946.1\|WP_145728685.1\|1131891_1135149_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP024946.1\|WP_145728695.1\|1151450_1152053_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	7.39533e-21

>NZ_CP024946.1|WP_145728687.1|1136081_1137080_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERSDTNPKLEVVGINDPANWEILAYLLEHDSVHGLLNEEARYSNCKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGINHFCYQNQAIVSNASCTTNAIAPICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKTFKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFVYHY
>NZ_CP024946.1|WP_145728686.1|1135247_1135940_-|Bax-inhibitor-1/YccA-family-protein
MALYDRANSHNAYAENSLLRESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLINLFLGSPMFQVVIAGASTILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP024946.1|WP_145728685.1|1131891_1135149_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPALDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEAIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEEGINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIAPNFEEVDTCAAEFLSLTPYLYSTYALNPLPPIENKQEEQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNVKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVYQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIAKSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVELGFELCATEGTHKALEKAGVESLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK
>NZ_CP024946.1|WP_145728684.1|1131455_1131887_-|Sua5-YciO-YrdC-YwlC-family-protein
MVLVYLAQSDTTIGLLSKDSEKLNALKNRPKNQSVLIESADFTTLKSLVRAPNAFKNLIRRSTKTTFIYPNSKAVRVVKGRHGDFLKRFKTLYSTSANLTQCAYDKEIASSLADVIVSDERGLFESSSSKIFKLYKHKKVRVR
>NZ_CP024946.1|WP_145728683.1|1128756_1131198_-|TonB-dependent-receptor
MNDKRFRKYCSFSIFLSLLGMFELEAKEEEKEEKKTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETRSASDFIPKGKDYAISGAATFLTNFGDRETIMGAYRNNHFDALLYYTHQNIFYYRDGDNAMKNLFDPKAGNKVTASPSEQNNVMAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPDDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIATIIPFTPNPQLSQGEENQCAAQGGIYDATKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVMGPDDPNMNGRCQRNGATANVIGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSWTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSHCPKTPGIFHVHKPGYGVSSFFITYKPAYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NZ_CP024946.1|WP_064782581.1|1126966_1128511_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFQNVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP024946.1|WP_145728682.1|1124686_1126279_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTASIHQCGATNNGSSGSATTAAATTNNSPCFQGNLDLYNEMVGSIKTLSQNISKNIFQGNNNTTSQNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYGNGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLANRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP024946.1|WP_145728681.1|1123111_1124665_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNGNDVSANALLSGAVGSGTCAAAGTAGGTSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALENKNGTSGSGTNGATSSDGQTYTPQAIQYLQGQQNILNSAANLLKQDELLLEAFNSAVATNIGNKEFNSAAFTGLVQGIIDQSQLVYNELTRNTISGSAVNSAGINSNQANAVQGRASQLPNALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSRSTNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP024946.1|WP_145728680.1|1120538_1122566_+|UvrD-helicase-domain-containing-protein
MLETLQLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAALYENILDEFENTKKKHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSGKFNKPALLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALLFNPKDIMAAIHVLSCISDIGSNTAKDIHEALMLLGNGDLKLALTHPNKEVKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKTLSDFFTLYAKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDSK
>NZ_CP024946.1|WP_145729216.1|1119395_1120535_+|N-6-DNA-methylase
MNNLDIKTLGQVFTPKKIVDFMLTLKHNHGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSAKEKLNYNLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKVFPNAMPNCVIFRFCKGNFSRITNDGLQFLCKKGILYFLNRSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNLEFVTSITKRTNVLEKMVFVNEPNDYLLQHKDSLMQRKIKKFNENNWFEWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLNLG
>NZ_CP024946.1|WP_145728689.1|1144342_1145446_+|Hop-family-outer-membrane-protein-HopJ/HopK
MQKTLLHSSFFLPLLLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQNQIYKLNQVENEITNMPKTFEYINNALKNHSKLTPTEMQAEQYYLQSTLQNIERIMMLSGGIASNPQLAQALEKMQEPITNPLELVENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNALDPSSYSKNVSSMYGVSLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSETDFINNYLTDYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NZ_CP024946.1|WP_001115881.1|1145513_1145720_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP024946.1|WP_001099607.1|1145878_1146460_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIKENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP024946.1|WP_145728690.1|1146456_1147602_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIVQFGMPNYFGSQRFGKFNDNHKEGLKILQNKTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISDFSVKENLEFFKQKNLSVNSNALKTLKNQAHPFKILEGDVMRHYPYGKFFDALKLEKESERFLKKEAVPTGLLDGKKALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP024946.1|WP_145728691.1|1147540_1148521_+|zinc-metalloprotease-HtpX
MRARCSKKSSMRKEKIMTNFEKIIAQNRLKTNAVLTTYCAIFAFIGLLVDAIRINANDLGIALFKLITFQIFPTITIIMFLAAFVVIVVCIQNFSSIMLSGDEYKLIDTSKVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWDESNSLIALTSALIEKLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLVLQIILPFLTFILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYKEINKNSTRSAAYLFNAEMFSTHPSVKNRIQSLSRRVI
>NZ_CP024946.1|WP_145728692.1|1148521_1149064_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRTEFMQLLKS
>NZ_CP024946.1|WP_145728693.1|1149079_1149991_+|polyprenyl-synthetase-family-protein
MSSPNLSFYHNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSVNGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGIVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLKKASGYALTLKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NZ_CP024946.1|WP_145728694.1|1149987_1150791_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITISTPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPFSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK
>NZ_CP024946.1|WP_000041791.1|1150787_1151447_+|hypothetical-protein
MSKNHRLAFLGLIVGVFFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP024946.1|WP_145728695.1|1151450_1152053_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDSANMALDFGLMQQEMQVFIESFDHAHHFWDKESDEFQRFIENHCARYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKISSVRVHETKNGYAESFLKDLENPHFKSLVHNHCVSFSQGIQNLWHDKDFFNKIISDEKQCFFHAKPLHQIP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024946_4	4.4\|1138024\|27\|NZ_CP024946\|CRISPRCasFinder	1138024-1138050	27	NZ_CP010123	Escherichia coli strain C5 plasmid A, complete genome	183240-183266	6	0.778

1. spacer 4.4|1138024|27|NZ_CP024946|CRISPRCasFinder matches to NZ_CP010123 (Escherichia coli strain C5 plasmid A, complete genome) position: , mismatch: 6, identity: 0.778

gacaacgccagctttgataacgacacc	CRISPR spacer
tcaagcgccagctttgatatcgacacg	Protospacer
   *.************** ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57421 : 68349

Bacillus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145728054.1\|57421_59470_+	DNA helicase UvrD	A7KV33	Bacillus_phage	1.6e-90	34.6
WP_145728055.1\|59466_60123_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_000780121.1\|60132_60696_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_145728056.1\|60695_61169_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.8e-27	43.6
WP_145728057.1\|61170_61746_+	dTMP kinase	Q2XUX0	environmental_halophage	3.4e-11	39.4
WP_145728058.1\|61733_62309_+	ComF family protein	NA	NA	NA	NA
WP_145728059.1\|62341_64381_+	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	1.2e-212	58.4
WP_145728060.1\|64377_65022_+	restriction endonuclease subunit S	A0A1W6JNN3	Staphylococcus_phage	1.1e-05	29.1
WP_145728061.1\|64996_65602_+	type II restriction endonuclease	A0A2H4J4K4	uncultured_Caudovirales_phage	8.8e-18	35.4
WP_145728062.1\|65667_68349_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	6.2e-47	28.0

DBSCAN-SWA_2

339260 : 347596

Streptococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078252619.1\|339260_339599_+	hypothetical protein	S0A2X1	Cellulophaga_phage	1.4e-17	53.5
WP_145728222.1\|339573_340920_+	AAA domain-containing protein	M1NSM1	Streptococcus_phage	1.9e-84	46.8
WP_145728223.1\|340912_342133_+	LlaJI family restriction endonuclease	Q6DMW8	Streptococcus_phage	2.1e-66	36.2
WP_145728224.1\|342207_343230_-	pseudaminic acid synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	5.0e-29	33.3
WP_145728225.1\|343233_343875_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	8.8e-16	28.7
WP_145728226.1\|343871_345149_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_145728227.1\|345379_346081_+	CvpA family protein	NA	NA	NA	NA
WP_145728228.1\|346090_347596_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.7e-92	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024946

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection