CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024948	Helicobacter pylori strain B140 chromosome, complete genome	2 crisprs	cas14j,cas2,cas3,cas14k,DEDDh	0	4	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024948_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024948_1

354739-354966

Orphan

Consensus_repeat	Method
AAGCGAAAACAACCGCTAACAATGAAATAA	CRT

3 spacers

The CRISPR arrays of NZ_CP024948_1

>merge|NZ_CP024948|1|354739-354966|CRT
AGGCGAGAGAAAACGCTAACAATGAAATAACCGCTAATAAAACGCAAGCGATAACTAACATTAACGAAGCGAAAACAACCGCTAACAATGAAATAAGCACCAACAAAACCCAAAGCCTTGAAGCGATCACGCAAGCGAAAACGACCGCTAACAATGAAATAACCGCTAATAAAACGCAAGCGATAACTAACATTAACGAAGCGAAAACAACCGCTAACAATGAAATAA

>NZ_CP024948|1|1|354739-354966|CRT
AGGCGAGAGAAAACGCTAACAATGAAATAA	CCGCTAATAAAACGCAAGCGATAACTAACATTAACG
AAGCGAAAACAACCGCTAACAATGAAATAA	GCACCAACAAAACCCAAAGCCTTGAAGCGATCACGC
AAGCGAAAACGACCGCTAACAATGAAATAA	CCGCTAATAAAACGCAAGCGATAACTAACATTAACG
AAGCGAAAACAACCGCTAACAATGAAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024948.1\|WP_145816714.1\|344321_344552_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|377300
NZ_CP024948.1\|WP_145816728.1\|355137_357114_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP024948.1\|WP_145816712.1\|344078_344285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145816730.1\|357124_357958_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024948.1\|WP_145816724.1\|351397_354280_+\|DUF3519-domain-containing-protein	unknown	unknown	gnl\|CDD\|376185
NZ_CP024948.1\|WP_145816734.1\|359454_360399_-\|pyruvate-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|239471
NZ_CP024948.1\|WP_145816738.1\|362902_363562_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024948.1\|WP_145816736.1\|360411_361635_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NZ_CP024948.1\|WP_145816717.1\|348244_349948_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|129176
NZ_CP024948.1\|WP_000656172.1\|361644_362037_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236596
NZ_CP024948.1\|WP_145816711.1\|343489_344047_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP024948.1\|WP_145816742.1\|365047_366238_+\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|224359
NZ_CP024948.1\|WP_145816740.1\|363568_364876_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145816722.1\|351198_351429_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_000486469.1\|362052_362613_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NZ_CP024948.1\|WP_145816732.1\|358022_359345_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NZ_CP024948.1\|WP_145733555.1\|344713_345652_+\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NZ_CP024948.1\|WP_145816721.1\|350215_350986_+\|HP1117-family-Sel1-like-repeat-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP024948.1\|WP_108169838.1\|345782_346217_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145816716.1\|346218_348039_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236270

Protein	Function_ID	Function_description	E-value
NZ_CP024948.1\|WP_145816711.1\|343489_344047_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.5898e-52
NZ_CP024948.1\|WP_145816714.1\|344321_344552_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|377300	pfam04316, FlgM, Anti-sigma-28 factor, FlgM. FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium. The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery.	0.000176954
NZ_CP024948.1\|WP_145816728.1\|355137_357114_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP024948.1\|WP_145816730.1\|357124_357958_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.12598e-34
NZ_CP024948.1\|WP_145816724.1\|351397_354280_+\|DUF3519-domain-containing-protein	gnl\|CDD\|376185	pfam18763, ddrB-ParB, ddrB-like ParB superfamily domain. A member of the ParB/sulfiredoxin superfamily of proteins found in polyvalent proteins prototyped by the version in the phage P1 ddRB protein. These proteins are predicted to function as nucleases.	2.84854e-33
NZ_CP024948.1\|WP_145816734.1\|359454_360399_-\|pyruvate-ferredoxin-oxidoreductase	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	7.57663e-136
NZ_CP024948.1\|WP_145816738.1\|362902_363562_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.07599e-35
NZ_CP024948.1\|WP_145816736.1\|360411_361635_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NZ_CP024948.1\|WP_145816717.1\|348244_349948_+\|gamma-glutamyltransferase	gnl\|CDD\|129176	TIGR00066, Contains:_Gamma-glutamyltranspeptidase_large_chain, gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NZ_CP024948.1\|WP_000656172.1\|361644_362037_-\|4Fe-4S-binding-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	2.97252e-83
NZ_CP024948.1\|WP_145816732.1\|358022_359345_-\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NZ_CP024948.1\|WP_145816742.1\|365047_366238_+\|glycosyltransferase-family-8-protein	gnl\|CDD\|224359	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane].	6.11748e-79
NZ_CP024948.1\|WP_000486469.1\|362052_362613_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	2.19254e-128
NZ_CP024948.1\|WP_145733555.1\|344713_345652_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.07777e-120
NZ_CP024948.1\|WP_145816721.1\|350215_350986_+\|HP1117-family-Sel1-like-repeat-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	5.56301e-39
NZ_CP024948.1\|WP_145816716.1\|346218_348039_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236270	PRK08471, flgK, flagellar hook-associated protein FlgK; Validated.	0

>NZ_CP024948.1|WP_145816724.1|351397_354280_+|DUF3519-domain-containing-protein
MKLPKALNEATAGAALKYHIKRALERSHSISEFSKNLELSAQKSHFSNNTLKIIEELNNGVKQASEEIKEKARDFSNEKLTNEQIKELLNNAEIPTSGRDAITFGVNNLNPEIVEFLHKNNKKMIIEKASNKELELLADANFKHPENIRASLDHDAIAHILKRHGVNSVNVRNGEIPITNEDIANYRYIVNNADAILRTLDNENKEFISAFKQINGYAVVVEQAINKKNELALKTMYKSNGDYKDNNAYKKFSSTLTLNADAKVNHRLSSYSGATENNTQKPLTDQEDLLKTSENLNETTPKLTKLSPLEQANAEKLAKLESKALQSEQEFLKAKEQELKRKDALKKKLEHERGNAGNIESQTKIEVGEDIPTQIQAQIPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQGMLNFTPKSRFAYERAIKEYYHIDLKPDELLVRVPHNRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYEAKLKELDQKLDADSIYSLKNIVAKNLNFDKATHPNVGDSNLALLMYNMPRTKTQGIELLNRWQKEFSNDIKSYEKVKKMFVDNAGSFHNLIHDMNFPNVSLNAYLSDIMDRSFANLKNYQSTSESLKDLSEKFYKTSSLEMFEKSDQSTSDISEILGGAIARFARFDDPSKALFEALRSDNIKKGLKDFKIADVTKDMFNPKSKEFKDIDIYDFTHYLLMVNREPNENNPTLKRLIEAVKDMQKESEKGIKKPKLETPSEWGQNYSEFKGDGLGAINKLLETKKGFVAGAFYKEGLGDIDLVWGNKDYGLEHILKRREKQAKNQGLNEQQAKEYALNIAKTIPEVIEKGVKVERNGRMAIEYQNIRVGLNDKWDNQKLDNKWVVSSYEIHNSESESPFLLMTQLQEVGLGTPKLTEPNPITKKLNKE
>NZ_CP024948.1|WP_145816722.1|351198_351429_-|hypothetical-protein
MASFRALGNFTPKMRSGALRYKVPSVNLVHWYFNAPLNDVANPWLKFFVVAGFKLSAILASFLKSLWKPLAIAWSL
>NZ_CP024948.1|WP_145816721.1|350215_350986_+|HP1117-family-Sel1-like-repeat-protein
MGYASKLALKICLASLCLFSTLSAEPLEQKRNFIYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDYKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYVKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEKDKKKAEEYMQKACDFDIDKNCKKKNTSSR
>NZ_CP024948.1|WP_145816717.1|348244_349948_+|gamma-glutamyltransferase
MRRSFLKTIGLGVIALSLGLLSPLSAASYPPIKNTKVGLALSSHPLATEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVIGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSTLGYGASKNIHIAAEAMRQAYADRSVYMGDSDFVSVPVDKLINKAYAKKIFDAIQPDTVTPSSQIKPGMGQLHEGSNTTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLPDELRIEKFGMPADVKDNLTKMGYQIVTKPVMGDVNAIQVLPKTKGSVFYGSTDPRKEF
>NZ_CP024948.1|WP_145816716.1|346218_348039_+|flagellar-hook-associated-protein-FlgK
MGGILSSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEAIERVHDEFVFARYTKANYENTYYDTEFSHLKEVSAYFPDIDEASLFTDLQDYFNSWKELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINKRIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNLNIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDKLNQGKVGALLNVYNDGSNGTLKGKLQDYIDLLDSFAKGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNYNIKNGSFDLIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNISLNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTGKINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMVNLIKFQSGYAANAKVITAIDRMIDTLLGIKQ
>NZ_CP024948.1|WP_108169838.1|345782_346217_+|hypothetical-protein
MVVLHSHLENALNQLEELIDLTERDIRDIKLAKHTEIFERNHQKQLAIQAFEKEKANIDAQMLSLKNQFPNKEMSELLDEKTSDFLNQMRESLFVLKEKNLIYSRMAFAVSEFYSSLIQQIIPHDTCDYKGSRHVGSHFLRVQA
>NZ_CP024948.1|WP_145733555.1|344713_345652_+|DNA-(cytosine-5-)-methyltransferase
MDFCSGIGGGRLGLEQCHLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPDFDALISGFPCQAFSINGKRKGLEDERGTIIYGIIRILKVKQPKCFLLENVKGLIHHKQQETFKTIIKALQEAGYTTYYQILNSADFQLAQKRERLYIVGFRKDLKHPFHFPLGLANDYCFKDFLDADNECYLDVSNAIFQRYLRNPYNHNRVFLENILTLENAVLDTRQSDLRLYFNVFPTLRTSRHGLFYTQKGKIKKLNAVESLLLQGFPRDLIAKIKNNPNFKESHLLSQAGNAMSVNVIAAIAKQMLKAI
>NZ_CP024948.1|WP_145816714.1|344321_344552_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MNIKLKDFTVINAVSSLAPVQSLGNYKRVEKNEKVENNEAALDRVAEIKKAIENNQYKINLHETSHKMAQDLLGIS
>NZ_CP024948.1|WP_145816712.1|344078_344285_+|hypothetical-protein
MNSSNLKNWLFPTICFFLFCYILIFLMFFMFKSLQSQSFGSVAETGRKPITTTKKFGKELQKQISKIH
>NZ_CP024948.1|WP_145816711.1|343489_344047_+|peptidylprolyl-isomerase
MQNHDLESIKQAALIEYEVREQGSSVVLDGNISKEPLEFIIGANQIIVGLEKAVLKTQIGEWEEVVIAPEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQATIKDFSNTHVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHGGGTGCCGGHGGHGGKKGGGCGCSCSHG
>NZ_CP024948.1|WP_145816728.1|355137_357114_+|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
>NZ_CP024948.1|WP_145816730.1|357124_357958_-|outer-membrane-beta-barrel-protein
MKRALYLILGLSYALHADSFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGLGYQLGSIQHNYSNLNLSQQFNKSQIIFSDGLSPVFKNSYVSNGFGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGQKESQSIIISTYGTYMDLLFNAYNGDKFFAGFNLGIAFAGVYDKLSDALLYQALLLDTFGGKVDPNGFQFLVNLGVRLGNKRNQFGFGIKIPTYYFNHYYSMNNISNNSGDVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NZ_CP024948.1|WP_145816732.1|358022_359345_-|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICAKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVQNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHSPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNSVIENLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSREESYSIVQENAMKIWEVLQQGAFKNADENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFG
>NZ_CP024948.1|WP_145816734.1|359454_360399_-|pyruvate-ferredoxin-oxidoreductase
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALANKSRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNDRWEYLQRREEAKV
>NZ_CP024948.1|WP_145816736.1|360411_361635_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MARSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYIDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTDRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGTLTHPTQQFVGLRGPKMSFF
>NZ_CP024948.1|WP_000656172.1|361644_362037_-|4Fe-4S-binding-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPAIALTQWPQKQEKKKS
>NZ_CP024948.1|WP_000486469.1|362052_362613_-|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLSKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIEAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NZ_CP024948.1|WP_145816738.1|362902_363562_+|outer-membrane-beta-barrel-protein
MDKTMVKILMGMALLSSLQAAEVDDEKSKKPKFADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGIIAQNLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPFIPNKRTEIVDGLSTTTLWHRLPVAYFNYIYNF
>NZ_CP024948.1|WP_145816740.1|363568_364876_-|hypothetical-protein
MIFLKKSLYALLFSGFLTPPLMKAASFVYDLKFMSFNFNLVAPNNNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNAQFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTIDTQELIDFVKSKTSK
>NZ_CP024948.1|WP_145816742.1|365047_366238_+|glycosyltransferase-family-8-protein
MTSASSHSLKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKEFAVLEVKDIEPFLDAIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSKMVWSDVDVIFCNEFSADFLNIKENDENYFYGVYDKIYPYEGFFYCNLTYQRKNQFCKKILEIIRAQKIDKEPQLTEFCRSKIAPLKIEYCIFPHYYRLSEEHLKGVANAIYHNTIKQALREPIVIQYDSHPYFQIKPWDYPFGLKADLWLNALAKTPFMSDYTKKMHTNESFYTTKMAEQHYFSSVKSSKEIVFKAPYLFFKSYLFVVFKERKIHSRAFELTCNLVKKFFNKLIYFVFLMPKALAKRVVSKILRVLGLHGIVKKILIKLLKKG

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Crispr_ID: NZ_CP024948_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024948_2

1700084-1700182

Orphan

Consensus_repeat	Method
GTGCGGTAAATTTTGGTGTTTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024948_2

>merge|NZ_CP024948|2|1700084-1700182|CRISPRCasFinder
GTGCGGTAAATTTTGGTGTTTCGGTGCAAACTTCGGCTTTAAGGGGTTTCTCGGCTTGTTTTTTGTCAATTTTCCGTGCGGTAAATTTTGGTGTTTCGG

>NZ_CP024948|2|1|1700084-1700182|CRISPRCasFinder
GTGCGGTAAATTTTGGTGTTTCGG	TGCAAACTTCGGCTTTAAGGGGTTTCTCGGCTTGTTTTTTGTCAATTTTCC
GTGCGGTAAATTTTGGTGTTTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024948.1\|WP_145818211.1\|1703224_1704532_-\|DUF814-domain-containing-protein	unknown	unknown	gnl\|CDD\|224212
NZ_CP024948.1\|WP_145818322.1\|1690300_1693210_-\|DUF3519-domain-containing-protein	unknown	unknown	gnl\|CDD\|376185
NZ_CP024948.1\|WP_145818205.1\|1700984_1701197_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818213.1\|1704528_1706103_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP024948.1\|WP_145818199.1\|1697941_1699105_-\|helicase-DnaB	unknown	unknown	gnl\|CDD\|223543
NZ_CP024948.1\|WP_000539108.1\|1702908_1703205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818215.1\|1706116_1706971_-\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|223139
NZ_CP024948.1\|WP_145818320.1\|1688523_1689078_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818194.1\|1689095_1690304_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336743
NZ_CP024948.1\|WP_145818217.1\|1707156_1707885_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP024948.1\|WP_145818318.1\|1687727_1688132_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818198.1\|1696374_1697931_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP024948.1\|WP_145818219.1\|1707895_1709638_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|224396
NZ_CP024948.1\|WP_145818324.1\|1699224_1699581_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818203.1\|1700680_1700983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818192.1\|1688131_1688527_-\|DUF1353-domain-containing-protein	unknown	unknown	gnl\|CDD\|377774
NZ_CP024948.1\|WP_145818326.1\|1699097_1699289_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818209.1\|1702299_1702575_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024948.1\|WP_145818195.1\|1695146_1696337_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP024948.1\|WP_145818207.1\|1701193_1702300_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189

Protein	Function_ID	Function_description	E-value
NZ_CP024948.1\|WP_145818207.1\|1701193_1702300_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.07128e-40
NZ_CP024948.1\|WP_145818219.1\|1707895_1709638_-\|DUF262-domain-containing-protein	gnl\|CDD\|224396	COG1479, COG1479, Uncharacterized conserved protein [Function unknown].	4.30592e-35
NZ_CP024948.1\|WP_145818199.1\|1697941_1699105_-\|helicase-DnaB	gnl\|CDD\|223543	COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].	1.86025e-09
NZ_CP024948.1\|WP_145818215.1\|1706116_1706971_-\|NAD(+)/NADH-kinase	gnl\|CDD\|223139	COG0061, nadF, NAD kinase [Coenzyme metabolism].	5.00615e-79
NZ_CP024948.1\|WP_145818322.1\|1690300_1693210_-\|DUF3519-domain-containing-protein	gnl\|CDD\|376185	pfam18763, ddrB-ParB, ddrB-like ParB superfamily domain. A member of the ParB/sulfiredoxin superfamily of proteins found in polyvalent proteins prototyped by the version in the phage P1 ddRB protein. These proteins are predicted to function as nucleases.	8.16453e-33
NZ_CP024948.1\|WP_145818194.1\|1689095_1690304_-\|hypothetical-protein	gnl\|CDD\|336743	pfam07564, DUF1542, Domain of Unknown Function (DUF1542). This domain is found in several cell surface proteins. Some are involved in antibiotic resistance and/or cellular adhesion.	0.00120513
NZ_CP024948.1\|WP_145818213.1\|1704528_1706103_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	4.61566e-130
NZ_CP024948.1\|WP_145818198.1\|1696374_1697931_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	2.28168e-102
NZ_CP024948.1\|WP_145818211.1\|1703224_1704532_-\|DUF814-domain-containing-protein	gnl\|CDD\|224212	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].	7.15395e-44
NZ_CP024948.1\|WP_145818192.1\|1688131_1688527_-\|DUF1353-domain-containing-protein	gnl\|CDD\|377774	pfam07087, DUF1353, Protein of unknown function (DUF1353). This family consists of several hypothetical bacterial proteins of around 100 residues in length. The function of this family is unknown.	1.91277e-12
NZ_CP024948.1\|WP_145818217.1\|1707156_1707885_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	4.11399e-47
NZ_CP024948.1\|WP_145818195.1\|1695146_1696337_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000581331

>NZ_CP024948.1|WP_145818324.1|1699224_1699581_-|ribbon-helix-helix-protein,-CopG-family
MRPCHYEHKQKNFKPKVKTECILLESVLLEILELIKEQEGKSRSVIIERMVIYFLEKDKGSKDETAWSKSKRSYKRTLKNYKKEANVKRKQLQKAKNDEKKKALYICKSSPFSYFRGY
>NZ_CP024948.1|WP_145818326.1|1699097_1699289_-|hypothetical-protein
MKRKKRYTFARVVRLAILEGIRKFQKENLFLNLQMQGFEIAISILEQKNKNIKKWKNAEFDNE
>NZ_CP024948.1|WP_145818199.1|1697941_1699105_-|helicase-DnaB
MNSFINYPNDLEDFLEEIHISSFTKFNQKIIQALLEMKNKNQVVQLETIRLKIGDEAFESKEFCAILQADSYPNYLDLKSDFKTYLSLKMQEHLANELIKATRKSEIFDFDFLGKYIKLGFNRNGKYYWEWEEFFKSKPKIEKIHTGIDFLDNISDGGFELGQLILLSGDPEAGKTLLGIQYMTNAQQQNKVTYFGFEFSVRKHIETLNSKGFKINKENYFIDDLSCEINELVSQIRGLAKEGHKLFIIDSQMKIQSPIVGRTIEEVETIKFTTLADLAKRLQVVIVLIIQNSKNDSYAPTGSRKGAHEAHIMIRIERIKSGELKHIKDYNERGKYRKVLILKNKQTGLQGVQFFRISDYKLFEISTDYKKFKESDFSGYDLNDFSD
>NZ_CP024948.1|WP_145818198.1|1696374_1697931_-|DNA-primase
MIINFEGLKNIVSVVDVIEKYLDLYKCGANLKACCPFHDERSASFFVSQEKNLFKCFGCGVSGDAFKFLQEFKKISFTEAIQEIASMYNYPLEYDNNEEKQEKERLKEVLAFANNLFKERILKEPVVLEYLNRRGVTLEKVKDYDLGFCTNEEKEELKKRFNPCDLIASGLFSDANKDRELKIFCNYRITFPLRDPKGKIVSFSARTCTIKNPRNGAKYINGRDTKIFKKSFILYNLNRARQAITQKKQVILCEGFFDVMSFEHFDYNNAICCIGTAFTKEHVKILNKMNAELCFCLDNDLAGLEANIRAIELCLLNHTTNLSVIKIKDKDFKDMGDYLEKNKRPNLVKINGFKFYCAYLLRGELDNKTKDFNHKRILRAIKDLSPFIKGDLLKILKSFLPSEDTKTERIKKPVLSILEARIYLTMIESEEFNYIARRHLSPADVEFKDIFKKIVLNDFRGLEFLKKYEVIREEHYAHCLNEFKIKGLKNSLRHAIENKDFMLIEALNHKIKELQTPF
>NZ_CP024948.1|WP_145818195.1|1695146_1696337_-|hypothetical-protein
MAFHFDITAPYPGGQSAPYIPRFEPLSPLNDGTTGQGAGQGMPPRINWDDIIPKDQENAFYTLGSRLKDLARSLDAYKGALEKYNRMESRYNSSLRDYNANINSLEHIKKERHDSFTTAKRLKELIRQEEEKKQRFSKELRLFFDFQKKEDDKQENIFQGLFKRKEFKALDAFLTNPYAIFPKGFIFEYHNPGSNNYNPLNAFNPMDGINNQFTINTLNQLNNNSFQRSLAGGADFNYFAPLNFSKALSVEQIVFSFENSVKIRQAWAFFLQNKWYSNGLKLKIIGAKIKTTKVLEDLQESIREKERELEDERRKQDANEENIKALTGQILEKSKELQKIKEQLAQEYRIIKEFTDKKQSLINEINHSNLNENLKHGFRDILNNLNNLGLLNQHQA
>NZ_CP024948.1|WP_145818322.1|1690300_1693210_-|DUF3519-domain-containing-protein
MINAYERNIKDPSTLGYVKKINAQFLREDIDKGIEDILKQNTQAYEAISDLNKTAISDYKNMKQTLELVDSAKIRDREITKEKAIENLMKVIQAQGEKDLSNYALLTKGLSEQDKEKLELSMLNALMEKSIKQGENLKVFDSTLFFNRLNEFKSEVFTTPKAKQYINIAKGFDKLFRNDATIAGKINYTTTKDIKSPLATSLEGAFHQKLTQRLVGTIVRNIPTTYIFKKLDELSGGAALKYHIQRALERSHTISEFSKRLELSAKNSKFSNATMRKIEEITQGIKSTKENIIKQEKALKDAMTPLKQFGKNYAEFILKPKEALEKLLQEKNGQVAGAAFRDDLGGIDFVWGKDGKDGYGLAHILEKREKQYTRLGLNTEQIKERTDELLKSIPEVIENGALFKDDLGRVRVELNNIRVGLKNTWDNNNLNNHFVVTSYERDEKVLRELETKPPLSNDYKDNSNYSALNLNENNSIEESLKSQEPPLSILEKSQLEKQKKLESERLAKAEKERAQKIKNKEEAELRDKIRAQKNATIGKSELDREIAKSENIPFKEPENAPKTSVSLNDDEIHPLKFVIVNKSDLKPNFKNTGTQTRTAVDSKKVEEIAKRFDPKLIIGRGGFDDLPIILPDGQVIAGNHRIQGMLNFNADSRKKYEQALKENFNIRLKPNELLVRMPEQELNDKEIFKLASKSNENRANSFSDTLLSAMSSYNDKLKHLPPQFESDSVENLANQVARVLERDAKIPSHTQVENANLSLLSHYARNTPNNSFLEVFDNAYKNLDREQFKAFKEMFAHNSANFHNLNNDTMLENFTISPYLTDALDTSAKMLESGNRADNFSKLVHDIDYLVNTTDENGMNAFIKENKDAYNSLISQLLGSSFARFLRLENPSAQFYEFLVKAKDQMIENTVDIFTGTSKPISQINIFDFIKYGIESGKSSKESRELLELLPELEKKFNAHEKFLQGDKK
>NZ_CP024948.1|WP_145818194.1|1689095_1690304_-|hypothetical-protein
MNYPNPPSPEITTKEKPAFKEITSELLRDLENALNNATLWKEQVNLSLKGVKRILEVITGIDFFQKANEIDERLRGILKWLENSSDGLQTKMREYESYFNDFNTSMHANEQEVTNTLNANAENIKSEIKKLENQLIETTTRLLTSYQIFLNKARDSATNQITANKTASLEAITLAKTSANNEINTNKTQAINNINEAKVSANNEINTNKQEVLNNITQEKEQATSEITEAKKTAFNELLETLKPKFSGLFAGVYYIYNPIYINGGWEQKIKDLSDYTLEKSKKYEIEVFFQFVSAKTVEKDSFFGLKTNEGFLKESIQKIMHKYTSQIYYKKLLVESVSGVLGLYHGYFYGNINYFNEAIITSIRELPNDMIVSKIINGTNGSNFSNAIQITNNLNDTSATR
>NZ_CP024948.1|WP_145818320.1|1688523_1689078_-|hypothetical-protein
MILENACEYKDYLGGVLDAMGLNGSFEVVGNAIRLNIIPSENQKTPTKEQVLEKLKEIVLKTKKQELEKEINATCKEKIIKDFRSSVLGRAHAYDLALEDQANLQALILANIDSVFRCAEVGNNGVVGAKTYKNHTKAQILQLSKEALNFKQNLIIFYGREKERLKAITSLEELEKFKIKEYLT
>NZ_CP024948.1|WP_145818192.1|1688131_1688527_-|DUF1353-domain-containing-protein
MRKFSDPIVAEFSNDGKRLRLVEGFEYYLKQDHSKKIIIPSGFSSDGFTNMGFSFVIPRYGSGLKCAILHDYMCDVLNGVVPRPQDFFINTRKECDDLFLESMLEVKAFSVFKAVLIYYAVRLFAKVKGLK
>NZ_CP024948.1|WP_145818318.1|1687727_1688132_-|hypothetical-protein
MRLVAFKTNGILKAFNRHNELIFQKEIHEQNTTQKLEFTKNNYYEFNGVFFGVCEGVGDLDYRDYPKNLNFNALLCETIENYLLNAKEPENKPQKALLADFLAVYEKNIIKGVYYLKPKFFAEKERQLIERILK
>NZ_CP024948.1|WP_145818203.1|1700680_1700983_-|hypothetical-protein
MELEKLQPIDLEVLQALNKQAYLPKSADKISKDLNIDYYYTLKIFNNLEKKGLCNQWLVNKKKEKETKNNYYKVCLLNDLGKDLCAYLSALKSNKPTKKD
>NZ_CP024948.1|WP_145818205.1|1700984_1701197_-|hypothetical-protein
MKENHKENTMGIFHYLAYRRIKESDTDLSFFDFIQKLEKLQKTHTIKSSVFNVRNRRVTSYSILLKKKAV
>NZ_CP024948.1|WP_145818207.1|1701193_1702300_-|tyrosine-type-recombinase/integrase
MHNIYLRGNAIYLSYVKNSKRHRESLSKLIKSLNLENNQALEYLKGLSLEKILKMQKSNKEPEQESLKTAKKIKKDTSIKQAKESFFSQKIGLKEESLRFMRLRFSTILKLMNIKESSKVSKITKESVTNYHNNAFKKYKKNTLVSLNSLLKSFLEFCEQEGYIDKTPYFKITMKNAKEGEKIDPFSLNEIKAILKSAPDLRLKAFLMTAFFTGLRTGEQLALLWSDIDFENKKINIDKSLNLSGVITSPKNKPSIRKVDLLEPVEKILKELKATEPANKKMIFLSVPKRTQDFQRAFKKLLKALNFKDRKLYATRHTFASLMLSQGEEAMWISQTLGHKDLNTTYSTYSHYIPKQDKERAKFLKGIL
>NZ_CP024948.1|WP_145818209.1|1702299_1702575_-|hypothetical-protein
MRQRNKTETSFNKLMEITQVVQALQVQRNSKQTSDNANTSEITNQSTPKPKGTARTKNSTLKPTKRAFSERQRITIRDNSQASAKEIKRGR
>NZ_CP024948.1|WP_000539108.1|1702908_1703205_-|hypothetical-protein
MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKDSKEGSKNRYPNSQRAKAFGLEEEEIELWHEEHLLDIVG
>NZ_CP024948.1|WP_145818211.1|1703224_1704532_-|DUF814-domain-containing-protein
MKFFLLKKFSEFLNTQTHFSLKRLSAFSFLLEAFSKEKHAFVVDLSVPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEAFRFNDRVAKNDILGALPPNIYEHQEEDLDFKGLLDILEKDFLSYQHKELEHKKNQIIKRLNIQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLIHKHESRVVLKDFEDKECAIEIDRSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGAQEESVLEMFIPVKNSKIKRPMSGYEVLYYKDFKIGLGKNQKENIKLLQDARANDLWMHVRNIPGSHLIVFCQKNAPKDEVIMELAKMLIKMQKDVFNSYEIDYTQRKFVKIIKGANVIYSKYRTISLKDT
>NZ_CP024948.1|WP_145818213.1|1704528_1706103_-|DNA-repair-protein-RecN
MRDFNNAQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNASNIEVELIAPFLDTEEYGIFREDDHEPLVISVIKKEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDTLMLSLLDGYIQNENKAFSPLLGVLEEKFTRLEKLEKERRLLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIALALEVLENTHKITHALESVGHSAEFLKSALLEAGALLEKEQAKLEECERLDIEKVLERLGMLSGIIKDYGSIMHAKERLGHVKNELHNLKEIDHHCETYHKEIEQLKTECLKLCEEISGFRKEYLAGFNALLSAKAKDLLLKSPSLVLEDAPMSEKGAQKLVLNLQNSQLETLSSGEYSRLRLAFMLLEMEFLKDFKGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPALAKNHILVFKENHKSLAKTLNNEERVLEIARMIGGSENIESAISFAKEKLKAQE
>NZ_CP024948.1|WP_145818215.1|1706116_1706971_-|NAD(+)/NADH-kinase
MKDSHQTIGVFVRPTHYQNPLFEKLERAKKWVLKLLEDEGFESFMIDSLDGAKDERLIEKAYAFLCLGGDGTILGALRMTHSYNKPCFGVRIGNLGFLSAVELNGLKDFLQDLKQDKIKLEEHLALEGRIGKTSFYAINEIVIAKKKALGVLDIQAYAGHTPFNTYKGDGLIIATPLGSTAYNLSAHGPIVHALSQSYILTPLCDFSLTQRPLVLGAEFCLNFCAHEDALVVIDGQATYDLEANQPLYIQKSPTTTKLLQKNSRDYFKVLKEKLLWGESPSKKR
>NZ_CP024948.1|WP_145818217.1|1707156_1707885_+|outer-membrane-beta-barrel-protein
MKKFFSKPLLALIVSVNVLLAMDGNGVFLGAGYLQGQAQMHADINSQKQATNATIKGFDALLGYQFFFGKYFGLRAYGFFDYAHANSIRLKNPNYNSEVAQLAGQILGKQEINRLTSLADPKTFEPNMLTYGGAMDVMVNVINNGIMSLGAFGGVQLAGNSWLMATPSFEGILVEQALVSKKATSFQFLFNVGARLRILKHSSIEAGVKFPMLKKNPYITAKNLDIGFRRVYSWYVNYVFTF
>NZ_CP024948.1|WP_145818219.1|1707895_1709638_-|DUF262-domain-containing-protein
MANEIKGKDYPLKDILATALVSYYQIPDYQRPYQWTEKNCEKLLDDLFSSYEYYKESGYFCGSLVLIVINTDSETNAETYDIVDGQQRLSTFILLAKVLATLYDKDLNTTSRELLEKSLGDTDEKKRERLHFNAMGLNAKDDFAYALEHFNDSQASKNKNNKNNYLKNAICLKNYLKEKEIKDINDFIKWLYFKVVFIKTTCPNVSMALRIFSVLNARGLPLHAIDVFKVELLKKLANKKDQEEFVSRWSALHQKCLGNESKFPKRKENKREKNATETLFSWYLTYLNPVTSGKSMEERLADQFERLNKPPLEYFKGVEDFYNAYCKVLEMQDWHAHLLSYLASDFWRIILCTSILHYYSDQDIETLKELLVKFYYQNWVATRKEPQKQTNCNIIKALKEEKSVESIASIVKEYLNYHKITQHFRDNLQDSKLYEQHKKVSKNSWLRPILILVEYSMSDDPRPKRIQKDDYHIEHILPQQPGPSSQWVKDFSEEERELYTHSLANLTLLGGNKNNQASNKDFKEKKEIYMRNAVKLGKDKVMTCYKMTIDIATNYTEWTPTSLEKRKEELIKRIESVLTL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119192	Helicobacter phage Pt1918U, complete genome	12796-12831	1	0.972
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119192	Helicobacter phage Pt1918U, complete genome	12796-12831	1	0.972
NZ_CP024948_2	2.1\|1700108\|51\|NZ_CP024948\|CRISPRCasFinder	1700108-1700158	51	KX119188	Helicobacter phage FrB41M, complete genome	2430-2480	1	0.98
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119188	Helicobacter phage FrB41M, complete genome	12697-12732	2	0.944
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119188	Helicobacter phage FrB41M, complete genome	12763-12798	2	0.944
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119194	Helicobacter phage FrG12G, complete genome	12640-12675	2	0.944
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119177	Helicobacter phage SwA626G, complete genome	14979-15014	2	0.944
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119177	Helicobacter phage SwA626G, complete genome	15045-15080	2	0.944
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119194	Helicobacter phage FrG12G, complete genome	12706-12741	2	0.944
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119188	Helicobacter phage FrB41M, complete genome	12697-12732	2	0.944
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119188	Helicobacter phage FrB41M, complete genome	12763-12798	2	0.944
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119194	Helicobacter phage FrG12G, complete genome	12640-12675	2	0.944
NZ_CP024948_2	2.1\|1700108\|51\|NZ_CP024948\|CRISPRCasFinder	1700108-1700158	51	KX119195	Helicobacter phage FrGC43A, complete genome	2435-2485	2	0.961
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119186	Helicobacter phage SwC520G putative crystallin beta/gamma motif-containing protein and tail fiber protein genes, partial cds	2082-2117	3	0.917
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119186	Helicobacter phage SwC520G putative crystallin beta/gamma motif-containing protein and tail fiber protein genes, partial cds	2082-2117	3	0.917
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119204	Helicobacter phage Sw577G, complete genome	13502-13537	4	0.889
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119206	Helicobacter phage UKEN32U, complete genome	14307-14342	4	0.889
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119174	Helicobacter phage UKEN31U, complete genome	14307-14342	4	0.889
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119197	Helicobacter phage PtB92G, complete genome	15190-15225	4	0.889
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119204	Helicobacter phage Sw577G, complete genome	13502-13537	4	0.889
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119204	Helicobacter phage Sw577G, complete genome	13634-13669	5	0.861
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119199	Helicobacter phage Pt5771G, complete genome	13912-13947	5	0.861
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119191	Helicobacter phage Pt4497U, complete genome	13495-13530	5	0.861
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119204	Helicobacter phage Sw577G, complete genome	13634-13669	5	0.861
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119199	Helicobacter phage Pt5771G, complete genome	13912-13947	5	0.861
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119191	Helicobacter phage Pt4497U, complete genome	13495-13530	5	0.861
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119191	Helicobacter phage Pt4497U, complete genome	13429-13464	6	0.833
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119206	Helicobacter phage UKEN32U, complete genome	14373-14408	6	0.833
NZ_CP024948_1	1.2\|354835\|36\|NZ_CP024948\|CRT	354835-354870	36	KX119174	Helicobacter phage UKEN31U, complete genome	14373-14408	6	0.833
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119191	Helicobacter phage Pt4497U, complete genome	13429-13464	6	0.833
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119199	Helicobacter phage Pt5771G, complete genome	13978-14013	7	0.806
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119199	Helicobacter phage Pt5771G, complete genome	13978-14013	7	0.806
NZ_CP024948_1	1.1\|354769\|36\|NZ_CP024948\|CRT	354769-354804	36	KX119197	Helicobacter phage PtB92G, complete genome	15256-15291	8	0.778
NZ_CP024948_1	1.3\|354901\|36\|NZ_CP024948\|CRT	354901-354936	36	KX119197	Helicobacter phage PtB92G, complete genome	15256-15291	8	0.778

1. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119192 (Helicobacter phage Pt1918U, complete genome) position: , mismatch: 1, identity: 0.972

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
ccgccaataaaacgcaagcgataactaacattaacg	Protospacer
****.*******************************

2. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119192 (Helicobacter phage Pt1918U, complete genome) position: , mismatch: 1, identity: 0.972

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
ccgccaataaaacgcaagcgataactaacattaacg	Protospacer
****.*******************************

3. spacer 2.1|1700108|51|NZ_CP024948|CRISPRCasFinder matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 1, identity: 0.98

tgcaaacttcggctttaaggggtttctcggcttgttttttgtcaattttcc	CRISPR spacer
tgcaaacttcggttttaaggggtttctcggcttgttttttgtcaattttcc	Protospacer
************.**************************************

4. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 2, identity: 0.944

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acgctgataaaacgcaagcgataactaacattaacg	Protospacer
 ****.******************************

5. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 2, identity: 0.944

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acgctgataaaacgcaagcgataactaacattaacg	Protospacer
 ****.******************************

6. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119194 (Helicobacter phage FrG12G, complete genome) position: , mismatch: 2, identity: 0.944

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acgctgataaaacgcaagcgataactaacattaacg	Protospacer
 ****.******************************

7. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119177 (Helicobacter phage SwA626G, complete genome) position: , mismatch: 2, identity: 0.944

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
acaccaacaaaaccgaaagccttgaagcgatcacgc	Protospacer
.************* *********************

8. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119177 (Helicobacter phage SwA626G, complete genome) position: , mismatch: 2, identity: 0.944

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
acaccaacaaaaccgaaagccttgaagcgatcacgc	Protospacer
.************* *********************

9. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119194 (Helicobacter phage FrG12G, complete genome) position: , mismatch: 2, identity: 0.944

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
ccaccaacaagacccaaagccttgaagcgatcacgc	Protospacer
 *********.*************************

10. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 2, identity: 0.944

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acgctgataaaacgcaagcgataactaacattaacg	Protospacer
 ****.******************************

11. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 2, identity: 0.944

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acgctgataaaacgcaagcgataactaacattaacg	Protospacer
 ****.******************************

12. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119194 (Helicobacter phage FrG12G, complete genome) position: , mismatch: 2, identity: 0.944

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acgctgataaaacgcaagcgataactaacattaacg	Protospacer
 ****.******************************

13. spacer 2.1|1700108|51|NZ_CP024948|CRISPRCasFinder matches to KX119195 (Helicobacter phage FrGC43A, complete genome) position: , mismatch: 2, identity: 0.961

tgcaaacttcggctttaaggggtttctcggcttgttttttgtcaattttcc	CRISPR spacer
tgcaaacttcggatttaaggggtttctcggcttgttttttgtcaatttgcc	Protospacer
************ *********************************** **

14. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119186 (Helicobacter phage SwC520G putative crystallin beta/gamma motif-containing protein and tail fiber protein genes, partial cds) position: , mismatch: 3, identity: 0.917

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgagaataaaacgcaagcgataactaacattaacg	Protospacer
 **  *******************************

15. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119186 (Helicobacter phage SwC520G putative crystallin beta/gamma motif-containing protein and tail fiber protein genes, partial cds) position: , mismatch: 3, identity: 0.917

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgagaataaaacgcaagcgataactaacattaacg	Protospacer
 **  *******************************

16. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119204 (Helicobacter phage Sw577G, complete genome) position: , mismatch: 4, identity: 0.889

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgagaataaaacgcaagcgataactaccattaacg	Protospacer
 **  ********************** ********

17. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119206 (Helicobacter phage UKEN32U, complete genome) position: , mismatch: 4, identity: 0.889

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
cagccaacaaaaccgaaagccttgaagcgatcacgc	Protospacer
  .*********** *********************

18. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119174 (Helicobacter phage UKEN31U, complete genome) position: , mismatch: 4, identity: 0.889

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
cagccaacaaaaccgaaagccttgaagcgatcacgc	Protospacer
  .*********** *********************

19. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119197 (Helicobacter phage PtB92G, complete genome) position: , mismatch: 4, identity: 0.889

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
acaccaacaaaaccgaaagccttgaagcgataacac	Protospacer
.************* **************** **.*

20. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119204 (Helicobacter phage Sw577G, complete genome) position: , mismatch: 4, identity: 0.889

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgagaataaaacgcaagcgataactaccattaacg	Protospacer
 **  ********************** ********

21. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119204 (Helicobacter phage Sw577G, complete genome) position: , mismatch: 5, identity: 0.861

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgaaaaacaaacgcaagcgataactaacattaacg	Protospacer
 **  **  ***************************

22. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119199 (Helicobacter phage Pt5771G, complete genome) position: , mismatch: 5, identity: 0.861

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcacgaaccaaacgcaagcgataactaacattaacg	Protospacer
 *.* **. ***************************

23. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119191 (Helicobacter phage Pt4497U, complete genome) position: , mismatch: 5, identity: 0.861

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acacgaacaaaacgcaagcgataaataacattaacg	Protospacer
 *.* **.**************** ***********

24. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119204 (Helicobacter phage Sw577G, complete genome) position: , mismatch: 5, identity: 0.861

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgaaaaacaaacgcaagcgataactaacattaacg	Protospacer
 **  **  ***************************

25. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119199 (Helicobacter phage Pt5771G, complete genome) position: , mismatch: 5, identity: 0.861

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcacgaaccaaacgcaagcgataactaacattaacg	Protospacer
 *.* **. ***************************

26. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119191 (Helicobacter phage Pt4497U, complete genome) position: , mismatch: 5, identity: 0.861

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acacgaacaaaacgcaagcgataaataacattaacg	Protospacer
 *.* **.**************** ***********

27. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119191 (Helicobacter phage Pt4497U, complete genome) position: , mismatch: 6, identity: 0.833

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acacgaacaaaacgcaagcgataaataacattaacc	Protospacer
 *.* **.**************** **********

28. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119206 (Helicobacter phage UKEN32U, complete genome) position: , mismatch: 6, identity: 0.833

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
cagccaacaaaaccgaaagccttgaagcgataacac	Protospacer
  .*********** **************** **.*

29. spacer 1.2|354835|36|NZ_CP024948|CRT matches to KX119174 (Helicobacter phage UKEN31U, complete genome) position: , mismatch: 6, identity: 0.833

gcaccaacaaaacccaaagccttgaagcgatcacgc	CRISPR spacer
cagccaacaaaaccgaaagccttgaagcgataacac	Protospacer
  .*********** **************** **.*

30. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119191 (Helicobacter phage Pt4497U, complete genome) position: , mismatch: 6, identity: 0.833

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
acacgaacaaaacgcaagcgataaataacattaacc	Protospacer
 *.* **.**************** **********

31. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119199 (Helicobacter phage Pt5771G, complete genome) position: , mismatch: 7, identity: 0.806

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgagaataaaacgcaagcgataactaacatcacgc	Protospacer
 **  **************************.*

32. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119199 (Helicobacter phage Pt5771G, complete genome) position: , mismatch: 7, identity: 0.806

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcgagaataaaacgcaagcgataactaacatcacgc	Protospacer
 **  **************************.*

33. spacer 1.1|354769|36|NZ_CP024948|CRT matches to KX119197 (Helicobacter phage PtB92G, complete genome) position: , mismatch: 8, identity: 0.778

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcaacaaccaaacgcaagcgataaacaacattaacg	Protospacer
 *. .**. *************** .**********

34. spacer 1.3|354901|36|NZ_CP024948|CRT matches to KX119197 (Helicobacter phage PtB92G, complete genome) position: , mismatch: 8, identity: 0.778

ccgctaataaaacgcaagcgataactaacattaacg	CRISPR spacer
gcaacaaccaaacgcaagcgataaacaacattaacg	Protospacer
 *. .**. *************** .**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1352198 : 1359531

Helicobacter_phage(75.0%)

integrase,transposase

attL 1348713:1348727|attR 1360012:1360026

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1348713:1348727	attL	NA	NA	NA	NA
WP_000813727.1\|1352198_1352612_-	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.8e-23	45.0
WP_000655170.1\|1352678_1353836_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.0e-120	56.6
WP_145817809.1\|1354134_1354518_+	hypothetical protein	A0A1S5RG74	Helicobacter_phage	1.1e-26	55.4
WP_145817811.1\|1354635_1355784_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5REX0	Helicobacter_phage	1.1e-181	87.2
WP_145817812.1\|1356005_1356314_+	hypothetical protein	A0A1S5RHA0	Helicobacter_phage	3.5e-39	86.4
WP_108529583.1\|1356282_1357566_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5REX3	Helicobacter_phage	2.2e-204	93.9
WP_145817292.1\|1357635_1358064_+\|transposase	IS200/IS605 family transposase	A0A1S5RG71	Helicobacter_phage	1.5e-75	97.2
WP_145817814.1\|1358706_1359531_+	DNA-binding protein	A0A1S5RGX7	Helicobacter_phage	2.3e-117	94.5
1360012:1360026	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1671256 : 1702575

Helicobacter_phage(97.14%)

integrase,terminase,holin,portal

attL 1672453:1672469|attR 1706998:1707014

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145818152.1\|1671256_1672120_+	3'-5' exonuclease	A0A0A7RWA3	Clostridium_phage	1.0e-14	32.5
WP_145818154.1\|1672159_1673029_-	SEL1-like repeat protein	NA	NA	NA	NA
1672453:1672469	attL	NA	NA	NA	NA
WP_145818156.1\|1673578_1674292_-\|terminase	terminase	A0A1S5RFI2	Helicobacter_phage	1.2e-109	90.3
WP_145818158.1\|1674610_1675432_-	Coiled-coil domain-containing protein	A0A1S5RFL1	Helicobacter_phage	7.8e-118	90.7
WP_145818160.1\|1675446_1676328_-	hypothetical protein	A0A1S5RG06	Helicobacter_phage	3.2e-69	74.4
WP_145818162.1\|1676377_1676704_-	hypothetical protein	A0A1S5RFG0	Helicobacter_phage	1.4e-46	96.3
WP_145818164.1\|1676752_1677295_-	hypothetical protein	A0A1S5RFF9	Helicobacter_phage	2.6e-77	86.7
WP_145818166.1\|1677320_1678115_-	hypothetical protein	A0A1S5RHD1	Helicobacter_phage	8.7e-114	84.3
WP_145818167.1\|1678117_1678663_-	hypothetical protein	A0A1S5RFB5	Helicobacter_phage	4.3e-96	94.5
WP_145818169.1\|1678711_1678930_-	hypothetical protein	A0A1S5RGI7	Helicobacter_phage	6.2e-30	87.5
WP_145818171.1\|1678926_1679919_-	hypothetical protein	A0A1S5RF11	Helicobacter_phage	1.2e-125	74.9
WP_145818173.1\|1679920_1680244_-\|holin	holin	A0A1S5RG01	Helicobacter_phage	3.1e-46	86.9
WP_145818175.1\|1680252_1680465_-	hypothetical protein	A0A1S5RH93	Helicobacter_phage	1.4e-18	73.0
WP_145818177.1\|1680477_1680690_-	hypothetical protein	A0A1S5RHA6	Helicobacter_phage	1.7e-13	80.9
WP_145818179.1\|1680754_1682311_-	hypothetical protein	A0A1S5RF33	Helicobacter_phage	8.6e-291	95.6
WP_145818180.1\|1682424_1684236_-\|portal	portal protein	A0A1S5RHB4	Helicobacter_phage	1.8e-308	95.2
WP_145818182.1\|1684302_1684746_-	hypothetical protein	A0A1S5RGE4	Helicobacter_phage	6.4e-42	82.3
WP_145818184.1\|1684806_1685172_-	hypothetical protein	G9CU67	Helicobacter_phage	5.6e-52	90.1
WP_145818186.1\|1685188_1686319_-	DUF4043 family protein	A0A1S5RG22	Helicobacter_phage	4.1e-186	86.7
WP_145818188.1\|1686332_1686902_-	Coiled-coil domain-containing protein	A0A1S5RFT0	Helicobacter_phage	1.9e-86	91.5
WP_145818190.1\|1687143_1687731_-	hypothetical protein	A0A1S5RGQ7	Helicobacter_phage	4.6e-96	93.3
WP_145818318.1\|1687727_1688132_-	hypothetical protein	A0A1S5RFJ6	Helicobacter_phage	2.4e-51	75.4
WP_145818192.1\|1688131_1688527_-	DUF1353 domain-containing protein	A0A1S5RFA6	Helicobacter_phage	2.7e-68	96.2
WP_145818320.1\|1688523_1689078_-	hypothetical protein	A0A1S5REZ4	Helicobacter_phage	1.3e-79	84.8
WP_145818194.1\|1689095_1690304_-	hypothetical protein	A0A1S5RFD9	Helicobacter_phage	1.2e-143	86.0
WP_145818322.1\|1690300_1693210_-	DUF3519 domain-containing protein	A0A1S5RH91	Helicobacter_phage	0.0e+00	94.0
WP_145818195.1\|1695146_1696337_-	hypothetical protein	A0A1S5RFD8	Helicobacter_phage	3.0e-179	86.9
WP_145818198.1\|1696374_1697931_-	DNA primase	A0A1S5RFR1	Helicobacter_phage	9.5e-290	95.6
WP_145818199.1\|1697941_1699105_-	helicase DnaB	A0A1S5RFP2	Helicobacter_phage	1.5e-207	93.3
WP_145818326.1\|1699097_1699289_-	hypothetical protein	A0A1S5RFM5	Helicobacter_phage	1.5e-19	84.4
WP_145818324.1\|1699224_1699581_-	ribbon-helix-helix protein, CopG family	A0A1S5RH56	Helicobacter_phage	9.1e-47	79.7
WP_145818201.1\|1699604_1700534_-	DNA-binding protein	A0A1S5RFR0	Helicobacter_phage	7.9e-151	89.4
WP_145818203.1\|1700680_1700983_-	hypothetical protein	A0A1S5RFZ0	Helicobacter_phage	5.2e-43	88.0
WP_145818205.1\|1700984_1701197_-	hypothetical protein	A0A1S5REX2	Helicobacter_phage	2.8e-27	90.0
WP_145818207.1\|1701193_1702300_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5RH79	Helicobacter_phage	4.1e-186	93.8
WP_145818209.1\|1702299_1702575_-	hypothetical protein	A0A1S5RFL3	Helicobacter_phage	3.4e-33	86.8
1706998:1707014	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024948

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection