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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042251 Geobacillus thermoleovorans strain ARTRW1 chromosome, complete genome 5 crisprs c2c10_CAS-V-U3,cas14k,csa3,RT,DEDDh,cas3,DinG,cas14j,Cas14u_CAS-V 1 9 16 0

Results visualization

1. NZ_CP042251
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042251_1 394716-398091 Orphan NA
50 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042251_2 1128907-1129000 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042251_3 2063815-2064713 Orphan NA
13 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042251_4 2997928-2998010 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042251_5 3499820-3499916 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP042251_5 5.1|3499850|37|NZ_CP042251|CRISPRCasFinder 3499850-3499886 37 NZ_CP042251.1 1852439-1852475 0 1.0

1. spacer 5.1|3499850|37|NZ_CP042251|CRISPRCasFinder matches to position: 1852439-1852475, mismatch: 0, identity: 1.0

gccgcgacgttgccatccagttcgccgcccattccgg	CRISPR spacer
gccgcgacgttgccatccagttcgccgcccattccgg	Protospacer
*************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042251_1 1.19|395951|35|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT 395951-395985 35 NC_019544 Deep-sea thermophilic phage D6E, complete genome 26315-26349 0 1.0
NZ_CP042251_1 1.29|396619|35|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT 396619-396653 35 NC_019544 Deep-sea thermophilic phage D6E, complete genome 43828-43862 0 1.0
NZ_CP042251_1 1.42|397492|38|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT 397492-397529 38 NC_008376 Geobacillus phage GBSV1, complete genome 12453-12490 0 1.0
NZ_CP042251_3 3.6|2064177|37|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR 2064177-2064213 37 NZ_CP025075 [Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence 12381-12417 0 1.0
NZ_CP042251_2 2.1|1128937|34|NZ_CP042251|CRISPRCasFinder 1128937-1128970 34 NZ_AP022559 Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence 29918-29951 1 0.971
NZ_CP042251_3 3.6|2064177|37|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR 2064177-2064213 37 NC_014916 Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence 6072-6108 1 0.973
NZ_CP042251_3 3.6|2064177|37|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR 2064177-2064213 37 NC_013412 Geobacillus sp. Y412MC61, complete sequence 25567-25603 1 0.973
NZ_CP042251_1 1.6|395082|39|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT 395082-395120 39 NZ_AP022559 Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence 29593-29631 2 0.949
NZ_CP042251_1 1.35|397021|35|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT 397021-397055 35 NC_029073 Geobacillus virus E3, complete genome 131869-131903 2 0.943
NZ_CP042251_3 3.7|2064244|36|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR 2064244-2064279 36 NZ_CP025075 [Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence 15038-15073 2 0.944
NZ_CP042251_3 3.7|2064244|36|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR 2064244-2064279 36 NC_013412 Geobacillus sp. Y412MC61, complete sequence 28224-28259 2 0.944
NZ_CP042251_3 3.7|2064244|36|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR 2064244-2064279 36 NC_014916 Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence 3416-3451 2 0.944
NZ_CP042251_1 1.38|397225|34|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT 397225-397258 34 MN434092 Klebsiella phage AmPh_EK29, complete genome 129453-129486 10 0.706

1. spacer 1.19|395951|35|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 0, identity: 1.0

tgcaccaaaatagacctggcgatgacgctaaggaa	CRISPR spacer
tgcaccaaaatagacctggcgatgacgctaaggaa	Protospacer
***********************************

2. spacer 1.29|396619|35|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 0, identity: 1.0

caatctcaaaaactcggttgcgatcatcgagcgat	CRISPR spacer
caatctcaaaaactcggttgcgatcatcgagcgat	Protospacer
***********************************

3. spacer 1.42|397492|38|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 0, identity: 1.0

aagatattgcgatcaacgaggcggtcgaactggataag	CRISPR spacer
aagatattgcgatcaacgaggcggtcgaactggataag	Protospacer
**************************************

4. spacer 3.6|2064177|37|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025075 ([Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence) position: , mismatch: 0, identity: 1.0

gattaataggctcggcattttcaggcaattggccttg	CRISPR spacer
gattaataggctcggcattttcaggcaattggccttg	Protospacer
*************************************

5. spacer 2.1|1128937|34|NZ_CP042251|CRISPRCasFinder matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 1, identity: 0.971

attgcggaaatgagagtgaaaacaaggaaaattc	CRISPR spacer
attgcggaaatgagagcgaaaacaaggaaaattc	Protospacer
****************.*****************

6. spacer 3.6|2064177|37|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR matches to NC_014916 (Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence) position: , mismatch: 1, identity: 0.973

gattaataggctcggcattttcaggcaattggccttg	CRISPR spacer
gattaataggctcggcatttttaggcaattggccttg	Protospacer
*********************.***************

7. spacer 3.6|2064177|37|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR matches to NC_013412 (Geobacillus sp. Y412MC61, complete sequence) position: , mismatch: 1, identity: 0.973

gattaataggctcggcattttcaggcaattggccttg	CRISPR spacer
gattaataggctcggcatttttaggcaattggccttg	Protospacer
*********************.***************

8. spacer 1.6|395082|39|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 2, identity: 0.949

caacaaagagtccgacgacgatacgcttgagatcatcgt	CRISPR spacer
caacaaagagtcagacgatgatacgcttgagatcatcgt	Protospacer
************ *****.********************

9. spacer 1.35|397021|35|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 2, identity: 0.943

taagcgtctgtcaatgtttcttgacgttcgctttc	CRISPR spacer
taagcgtctgtcagtgtttctagacgttcgctttc	Protospacer
*************.******* *************

10. spacer 3.7|2064244|36|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025075 ([Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence) position: , mismatch: 2, identity: 0.944

agtaagcggccaagtggaaagggttttcgccctaga	CRISPR spacer
agtgagcggccaagtggaaagggttttcaccctaga	Protospacer
***.************************.*******

11. spacer 3.7|2064244|36|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR matches to NC_013412 (Geobacillus sp. Y412MC61, complete sequence) position: , mismatch: 2, identity: 0.944

agtaagcggccaagtggaaagggttttcgccctaga	CRISPR spacer
agtgagcggccaagtggaaagggttttcaccctaga	Protospacer
***.************************.*******

12. spacer 3.7|2064244|36|NZ_CP042251|CRISPRCasFinder,CRT,PILER-CR matches to NC_014916 (Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence) position: , mismatch: 2, identity: 0.944

agtaagcggccaagtggaaagggttttcgccctaga	CRISPR spacer
agtgagcggccaagtggaaagggttttcaccctaga	Protospacer
***.************************.*******

13. spacer 1.38|397225|34|NZ_CP042251|PILER-CR,CRISPRCasFinder,CRT matches to MN434092 (Klebsiella phage AmPh_EK29, complete genome) position: , mismatch: 10, identity: 0.706

tgaaaatcagcagatattgcaaaagctcgaggaa	CRISPR spacer
gaaaaatcagaagatattgcagaagctaaattcc	Protospacer
 .******** **********.***** .*    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 238666 : 344919 112 Thermus_phage(75.0%) plate,holin,portal,capsid,tail,protease,terminase,tRNA,transposase,integrase attL 250111:250170|attR 316437:319382
DBSCAN-SWA_2 348071 : 435625 60 Staphylococcus_phage(21.05%) tRNA,transposase,holin NA
DBSCAN-SWA_3 578107 : 638638 54 Bacillus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_4 826843 : 875582 40 Bacillus_phage(25.0%) transposase NA
DBSCAN-SWA_5 1059284 : 1106984 42 uncultured_Caudovirales_phage(18.18%) protease,transposase NA
DBSCAN-SWA_6 1498897 : 1571476 55 Bacillus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_7 1718193 : 1763884 42 Staphylococcus_phage(40.0%) transposase NA
DBSCAN-SWA_8 1803193 : 1821650 12 Bacteriophage(50.0%) transposase NA
DBSCAN-SWA_9 2015568 : 2113384 79 Planktothrix_phage(28.57%) transposase NA
DBSCAN-SWA_10 2322395 : 2377909 57 Bacillus_phage(22.22%) coat,protease,transposase NA
DBSCAN-SWA_11 2454716 : 2474468 19 Paenibacillus_phage(40.0%) transposase,integrase attL 2448387:2448402|attR 2476279:2476294
DBSCAN-SWA_12 2673635 : 2732692 55 Salmonella_phage(25.0%) coat,protease,transposase,tRNA NA
DBSCAN-SWA_13 3254425 : 3284310 15 Bacillus_phage(25.0%) protease,transposase NA
DBSCAN-SWA_14 3320800 : 3367201 38 Pandoravirus(14.29%) transposase NA
DBSCAN-SWA_15 3393046 : 3433799 35 Tupanvirus(33.33%) transposase NA
DBSCAN-SWA_16 3564497 : 3574317 8 uncultured_Mediterranean_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage