CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP042326	Euhalothece natronophila Z-M001 chromosome, complete genome	9 crisprs	cas14j,DinG,Cas14c_CAS-V-F,Cas14u_CAS-V,c2c9_V-U4,RT,csa3,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm6,cas3,c2c5_V-U5,WYL,cas14k	2	3	5
NZ_CP042329	Euhalothece natronophila Z-M001 plasmid pEu3, complete sequence	0 crisprs	cas14j	0	0	0
NZ_CP042330	Euhalothece natronophila Z-M001 plasmid pEu4, complete sequence	0 crisprs	NA	0	0	0
NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	2 crisprs	cas1,cas2,csx1,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL	0	20	0
NZ_CP042328	Euhalothece natronophila Z-M001 plasmid pEu2, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042326_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_1

235912-236006

TypeV

Consensus_repeat	Method
ATCTCCATCCCACGCTGTTCACC	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP042326_1

>merge|NZ_CP042326|1|235912-236006|CRISPRCasFinder
ATCTCCATCCCACGCTGTTCACCGCGCTGTTCACCAATCTCAATCCCACGCTGTTCACCGCGCTGTTCACCAATCTCAATCCCACGCTGTTCACC

>NZ_CP042326|1|1|235912-236006|CRISPRCasFinder
ATCTCCATCCCACGCTGTTCACC	GCGCTGTTCACCAATCTCAATCCCACGCTGTTCACCGCGCTGTTCACCA
ATCTCAATCCCACGCTGTTCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146294274.1\|252823_254056_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133037
NZ_CP042326.1\|WP_146294276.1\|255080_256424_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP042326.1\|WP_146294260.1\|220048_220594_+\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP042326.1\|WP_146294267.1\|229474_235288_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368653
NZ_CP042326.1\|WP_146294275.1\|254085_255075_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226081
NZ_CP042326.1\|WP_146294271.1\|246010_248164_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374042
NZ_CP042326.1\|WP_146294259.1\|219041_219791_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|367124
NZ_CP042326.1\|WP_146294272.1\|248299_250465_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NZ_CP042326.1\|WP_146294270.1\|244430_244835_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP042326.1\|WP_146294264.1\|226344_227256_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|182184
NZ_CP042326.1\|WP_146294258.1\|218377_219040_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NZ_CP042326.1\|WP_146294265.1\|227258_227804_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP042326.1\|WP_146294263.1\|225196_226339_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NZ_CP042326.1\|WP_146294261.1\|220680_220995_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294262.1\|223507_224875_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP042326.1\|WP_146294268.1\|238193_238904_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294269.1\|239710_243766_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146297232.1\|244958_245942_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
NZ_CP042326.1\|WP_146294266.1\|228128_229013_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP042326.1\|WP_146294273.1\|250505_252812_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146294274.1\|252823_254056_-\|glycosyl-transferase	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	0.000360339
NZ_CP042326.1\|WP_146294276.1\|255080_256424_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	5.41137e-108
NZ_CP042326.1\|WP_146294260.1\|220048_220594_+\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	4.67142e-17
NZ_CP042326.1\|WP_146294267.1\|229474_235288_-\|hypothetical-protein	gnl\|CDD\|368653	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP). This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.	3.38973e-20
NZ_CP042326.1\|WP_146294275.1\|254085_255075_-\|hypothetical-protein	gnl\|CDD\|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	9.22321e-14
NZ_CP042326.1\|WP_146294271.1\|246010_248164_-\|hypothetical-protein	gnl\|CDD\|374042	pfam15711, ILEI, Interleukin-like EMT inducer. ILEI is a family of proteins found in vertebrates. It is heavily involved in the process of the transition from epithelial to mesenchymal tissue - EMT - during all of embryonic development, cancer progression, metastasis, and chronic inflammation/fibrosis. ILEI is upregulated exclusively at the level of translation, and abnormal ILEI expression, ie cytoplasmic over-expression instead of vesicular localization, is associated with EMT in human cancerous tissue. In order to induce and maintain the EMT of hepatocytes in a TGF-beta-independent fashion ILEI needs the cooperation of oncogenic Ras.	1.82196e-07
NZ_CP042326.1\|WP_146294259.1\|219041_219791_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|367124	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase.	3.30286e-60
NZ_CP042326.1\|WP_146294270.1\|244430_244835_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.13098e-12
NZ_CP042326.1\|WP_146294264.1\|226344_227256_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|182184	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional.	8.29683e-136
NZ_CP042326.1\|WP_146294258.1\|218377_219040_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	8.27254e-34
NZ_CP042326.1\|WP_146294265.1\|227258_227804_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.95419e-110
NZ_CP042326.1\|WP_146294263.1\|225196_226339_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NZ_CP042326.1\|WP_146294272.1\|248299_250465_-\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	7.52003e-49
NZ_CP042326.1\|WP_146294262.1\|223507_224875_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.7264e-38
NZ_CP042326.1\|WP_146297232.1\|244958_245942_-\|glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.30863e-95
NZ_CP042326.1\|WP_146294266.1\|228128_229013_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP042326.1\|WP_146294273.1\|250505_252812_-\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	7.14023e-66

>NZ_CP042326.1|WP_146294267.1|229474_235288_-|hypothetical-protein
MSDPANLEFSLDPLFNTWQEFLTEAATSGRLISAAQEALLLDDTPDSLETLVTQWQEGDFSQLPEIEVLSDSNISGAAGAYARSNETIYLNEDWLASASEDGAMRVLTEELGHHLDNVVNEENTPGDEGAIFSALALGEELTETELETLRETDDTGYVTVDGEEIVVEQHNSSLVESFNGFQRIPAATPTPSRRTSGEWRNDRAFAALKDDGSVVTWGVSARGGNSSEVADELSSGVQQIFSTKGAFAALKEDDSVVTWGGGGAGGNSSEVADELSSGVEQIFSTDNAFAALKDDGSVVTWGSNSGGGDLTGEGMQFVTGVPGGELNNVQDVFSTKGAFAALKGDGSVVTWGDDFEGGNSIDVANELNSGVEQIFSTDSAFAALKDDGSVITWGAGAASNSIDVSGVEQIFSNGWAFAALKEDGSVVTWGDDDWGGDSSEVADDLSSGVEQIFANRWAFAALKEDGPVVTWGADDNGGDSSEVADDLSSGVEQIFSTNSAFAALKDDGSVVTWGDSSRGGKSSIVSSEFDFDEQEQVIEEIEDVSEQLESGVKDIFSNERAFAALKGDGSVVTWGDDDWGGDSSEVADDLSSGVEQIFSTRFAFAALKEDGSVVTWGRDDEGGDSSDVADELSEGVATIASPFVEGELDPDDPPDDPDDPDDPTAPEIIPQDPFSININTVAEGDTLFTVEANPGESEEDDLVFSIVDDIPEFSIDFNSGEVILEEEETVQEGDSFDFEVIVEDPESGITSEPEEFSVEFTSDDPPDDPEPDEDGVITIEPFQLRAEQGFDEIEPGHQRAVGNIELGLIPDNDQSFQPWLEADGELFYKLDPTQATIGGEAIIEVSDQLRDQFPDQFPELPPLFDGEFDFSFEPEQNPSDGITVLEQQEEFNFNAFGLDLELDSFELTAFPLEPALQLQGEADLTIEAFNDFGFSADLTDSNRLQISSSGLDVSGKFGAENIGLGIGDWGLNEVDVEIDTFDGIEVEGEGGIGTPFGNIEGSFALDLEESGLGIFDQLGLGASELNQPIANTGVFLQEISGEVGNLGDGFPSLKGDLALTAGPDPQQLFDDWSFGFELDLDVPNLVELGLEGGFSTSPTQTKLEGGADLEILGGSLLSADIDAKVELLQSASGERDQATFNLDGDFDFLQNFIDFKGMIRASATQEEGSSPEFGLVAQGNSTVNVPDVSGLQPDWLPDWISFDNFAGTELGNGEFRFNFGTENAAEDNYIAGWGEIEVPSLADIFSFGEQESDPIGIGLRLNFDGSVTTIGSNELDEVEEEDDVRSLNTLSSNSASLQSNTEVQSNEPSLEESATFEIDDETAAVIFNAQWDDSEAAPAFALEDPNENRLTPEEEDALQPVVEYSDETSQVIAADFQQLDAGDWRFGTMDEPPEGLELSAFDLATSVGLELNLAQDSPEMVVPGETIEIDYEVGNLAEEANLELFYDTQEDTLTGESIDQITVGSNDSGTLEWEIPEGLSNNDYYIYGVIEGETQVPEWEYAPETITVAQPELEIEDVTHQVSAEEDTTIDFEVTLTEPAQDPVTVNYTTNNGTAVADSDFEQKEGELTFEENQQTATIEIDVFSSPDLLRETSFSLELSNAENAFIPEGENRAVATPDTFNLGGDTPNVVEGTLEELDEKSIIGFEADDTLRVRNTSFDEEQLTVTEGSTILEIDANDDGEVDSTITLEGDYSDGEFLTEQVEDDTEIFFSASPEPEPEPDPDPDPEPEPDPDPDPEPEPEPDPDPDPEPEPEPEPEPEPDPDPDPEPDPEPEPEPEPEPEPELDLPDIPLAVNSESIFNESLYLDQNPDVLQAVENDDFDSGLDHFQQFGLGENRIPTDILQNFDPTSYLSENSDVADAVGEDEIFQSALDHYLNHGFKEPREGSNIPYDEAFYLNEYSDVLDAVENDDFGSGFEHFALHGAEEGRAATQELLEF
>NZ_CP042326.1|WP_146294266.1|228128_229013_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKQRKGIILAGGNSTRLYPVTQVISKQLLPVFDKPMIYYPLCTLMMAGIREILIISTPEDTPLFQKLLGDGSQWGLQLEYAVQAQPNGLAEAFVIGADFVKDHPSALILGDNIFHGHDLGALLQAANKRPSGATVFAYAVTDPERYGVVGFDETGHATSLEEKPKQPRSRYAVTGLYFYDEKVIDIAKGIQPSARGELEITDVNLAYLEQGALNVEVMGRGMAWLDTGTHESLNAASAFIETLETRQGLKVCSPEETAYRMGFIDAEGVRLLAEPLAKNGYGQYLLQMLDDNIF
>NZ_CP042326.1|WP_146294265.1|227258_227804_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MHVTPTAIPEILLIEPTVFGDERGFFMETWQRCKFAEAGIDYDFVQDNHSRSVYGTLRGLHYQICKPQGKLVRVTRGEVFDVAVDLRQHSPTFGQWVGEMLSSDNKRMLWVPPGFAHGFYVTSDTAEFQYKCTDYYSPECERSIHWNDPKIGIAWPIQGLPLVSEKDEQADLFEHAEYFAY
>NZ_CP042326.1|WP_146294264.1|226344_227256_+|dTDP-4-dehydrorhamnose-reductase
MKILLLGCQGQVGWELQRSLAPLGEVIALIRHNTDGLCGDLNQPTALARTIKTLTPNVIVNAAAYTAVDQAESESDLAQAINAVGPSVLARETQKLGALLVHYSTDYVFDGSGAKPWREDDRTVPLNVYGQTKRAGERAIQESDCRHLIFRTSWVYASRGKNFIRTMLRLAAERDALQVIDDQYGAPTGAALIADVTAQALPLALRKPELEGLYHLAASGETTWHGYACRVIEQARQAGWPVKIAEQDVWPIATDAFPVVAQRPNNSRLDCTRLEEAFGLYLPAWQRGVDHTLAEILDCGGIA
>NZ_CP042326.1|WP_146294263.1|225196_226339_+|dTDP-glucose-4,6-dehydratase
MKILVTGGAGFIGSAVVRQFIAETEHTVINVDALTYAGNLESLSDVRDHPRHIFEHVDITNHDSLTSVFQKHQPGAVMHLAAESHVDRSIDGSAEFINTNIVGTYLLLECSREYWNRLPANDRQSVAKGEKSGGVTKESFRFHHISTDEVYGDLTVNDPPFTEETPYAPSSPYSASKASSDHLVRAWYRTYGLPIIVTNCSNNYGPYQFPEKLIPLMILNALDCKPLPVYGRGENIRDWLYVEDHARALRYVLAHGVVGRTYNIGGLNEKTNLEVVNSICDLLDELRPLSGLPEISQAPDKLSKSYKSLITFVTDRLGHDHRYAIDNSRIANELGWQPLESFETGLRKTVQWYLDNTTWVERVRLGTYRDWIATEYTKGG
>NZ_CP042326.1|WP_146294262.1|223507_224875_-|transposase
MFTLSYEFKLEPNQLQIDMIEQTLGVCRTVWNYALRERKDWINSRKCPVNACSIEKEYIIPADEPYPSYSRQAKALTEAKKDSERLKSVNAQVLQQVLRTLDRAFSDMKSRGFGFPRFKNKYRLRSYLIPQIRGEVLKGNQIKLPQLGWVRFRKSRDIPEGFKVKQVRVIRKASGYFVMLSLQLDVEVPQPFPHGHPRGLDLGFDKFVATSDGLEVKRPRFLESLQRKLRLLQRRLKNKQKGSNNRHKLNRKIARVHQRISDARKNWHFQLAHQLCDGAGMIFVEDINFRSWQRGMLSKHAADAGFGQFVNILEWVCWKRDVYFAKVDKDGTSQECSQCGAHTGKKTLDVRVHHCPECGYIGSRDVVSAEVIRNRGLTRARVSRASSSDPSAGFPRIGKRSLESRPKGLSDLGQRLENKQIACGGDLTGMEETSSSQEPETGNLVVRLGISRHSA
>NZ_CP042326.1|WP_146294261.1|220680_220995_-|hypothetical-protein
MKKYPQLMRLIWSYYRENKSESERLEVLKKCKIKRRWGTFRVDCPSKEVANLIRDIIPLLELPIIKLRLAKRIKIFIKGQLFENYTVGSEGLSPADAKKFLSNY
>NZ_CP042326.1|WP_146294260.1|220048_220594_+|DoxX-family-membrane-protein
MLQKILNLSTKLFRSNLSANYWSQAAWTILRVIVGVMMVHNGLDKLSDVENFATAYVEFIGLPFPIFFTYVAAYTELIGAPLVAIGFLTRPAALGLVGTMAVAMYHHILVAGLSIPYLELSAIYASCFLFFLINGAGLFSVDNFISGWLSSQFLSLEQQPEQIRQDAPQVTDKSEESVMSN
>NZ_CP042326.1|WP_146294259.1|219041_219791_-|D-alanyl-D-alanine-carboxypeptidase-family-protein
MSVRNNQTSPDEIPEAVRDVTPVRRRKRNSLRRGGAMAIGFTVIVVILGSSFWEPMVETFSSALETEETISEVSEEMSQEERREDLLGHFPYEEAPPESLTALSSGSTIKLRTPAAEKFVEMQEAAQEDGVSLVPLSGYRSVEEQEDIFFGVKAERGEVPRERAQVSAPPGYSEHHTGYAIDIGDREAPTTHFQEDFAKTEAFQWLEENAARYSFELSFPKDNPQGVSYEPWHWRYVGNQESLEIFYGN
>NZ_CP042326.1|WP_146294258.1|218377_219040_-|HEAT-repeat-domain-containing-protein
MSEVNLEQLSQQLESPNQRDRMVGLAQLREVDPEQAVPLIKKVLYDQSLQIRSMAVFALGIKPTVECYPLLLGFLEDEDYGIRADAAGALGYLQDPRAFDPLVRLFYEDTHWLVRFSAAVSLGNLQNPKAKEVLLQALNSEEVVLQQAAIAALGEIKSTDSVEEMLRFVQSEDWLVRQRLAEALGNLPTEQSVSALNYLQKDSHPQVSKAATISLEKLRN
>NZ_CP042326.1|WP_146294268.1|238193_238904_+|hypothetical-protein
MVNLSPQFFKQSMEVQEIAITLVVKGLNPAMLTLENCHAWGVIPEDWELSKNPMISSQQARLNFKNGVNVMAKPHQINFAEPIPVKGVEGMKFAAVAKQFVDQLTQVNYQQLRIEPRLIIVFNHQENDLRNYPREFILDYLMASGPWLNVGERSPQIAVNFTYQFPEYQLQLNIQEGYSQQSNQSSVRGLVFSGSFIYPINEKKSRESIKGEIDTWSNQLNQFQTIVKEQFLGKKG
>NZ_CP042326.1|WP_146294269.1|239710_243766_-|hypothetical-protein
MVLTREQAQRFFDEDYYLNNNEDVRDAVNDGVVASGLTHFLQNGVAEGRAPNSLLNDFAPEDYLDAYPDVADAIDDGFIDSALEHFLAFGAAEGRLAGTGFDFFSSSSYLSANPDVANAVNEGVFNSALEHWINFGFAENRPGVEEGVGGDFMLTRGSDNLTGTSGDDVFVAPLEQDGGTVFNTFESGDVLDGRGGNNILEADLTDTAGAPSISSITDNIQEIYIRSQFQNTDAADNLLFEALQDSFDIDIETELGANGSFPVISDIDFSFIGGLQFLEADDLFSQGTNIDAENNSGVEQWWSENSRADLLIEDIRERSDDVTFGMRDTDPGVSYAAFFDPASLAADATDSSLTLTLEDVENPDSLENFPVNGLTFLLDGEEFEIRVPREDEDGNPINSSYDDFVAALNEELEATEGLENVQASLNPDNTITLTDGEGRTFEEDSFLFIDDQVPSRGTLTFNQEVGAPIEGDIATNIVLDGAGRTEEGGVMVVGSMGARGGIQEFDVEVGNTSWLQALSSTNNTLETVNVESNGSGALYLGLGERDGDDDITGDVGFSVPETVDDRLAQSGLVDVQTFNAAGFENELKLGAQLTAESIDKYLADAEEPVTFEYLLGDGGSNLNLGISPTLSLDPDFELEIVGGAQDDRINLSDATVKENISIDGGDGENTLEVNTDTDPNTVPGSNFNEVENIQRFVIAGNNFDPGPQTNQTSQNIEEGNLSGLEEIIIATEAFFDTTGDGNPNTFLPADTTVSQFEADTDIIISGKNQTIGSGNSNDDQDFGTIAIEDAPESELELILDNTARVNGELFVAELDLEEDDNVETLELVSDGRRDTENSVLNAVLPNVTTLELVGSQDFNIHVSSMAENDEPLEIDGSELGEEDDEGDFQPATLTLALNAELLTEGNDDTLTGGEGEDDSLILYGNPEDDVNPDVSDFESVQFGLRLDRDEDLAEETPFQGADQAEFSGTYDASGFGAFYDIQNLDGDLRLEGLPDGVTVRIYAPDADVFTDVTNIELIADGENDNIDITFVDDTGINRGNNPEGTGWGNLEEPDGSGGFQPILDDNNQPVQNNILTIQDYSDIEIELDSGGSPYQYLFQLELLDGEGEARFDNTTPNNDFDADEFLPDVLTITGGDSGLNGGDRLILANAADRSADQESTLDPALNTIDISGFGGNFASGFNTADADGDDTTIIGNEYNLFFELPGGDDFNTRFVFEEDAASESTIWVINNFRAIDDGDVTVDDVTELDLTAFGINNTFTGIDVTPFGDRTLSDTDSDFDPNALNDPDDIDTSDFDAAFPELIEQLGFDDLADFITDGANDGVVIDSTEGLDFQIVLPGVDEGDLGTDNIV
>NZ_CP042326.1|WP_146294270.1|244430_244835_+|GtrA-family-protein
MILLNWKLIKFLVAGATTTLVNVLLIFFFVEVMGLNTPSLRNLANIIAIELSVLLTFFIYRVWVWPMKEFNFRDILFRQIPMFHMVAGLAISLRVLILFPLLDYIGVNYIINTIIGIAVGSVLNYFVSDRFIFR
>NZ_CP042326.1|WP_146297232.1|244958_245942_-|glycosyltransferase
MQNITLSVVIPCYNEQDNIDLLLKRLLAVIDQLNLTFEIICVNDSSKDDTLNCLIQHHKINPQIKVINLSRNFGKEIALTAGIDYAIGDAVIPMDADLQDPPELIEQLVAKWREGYDVVYATRRSRHGESWLKRWSAYAFYQIAQHLSEVPIPLNTGDFRLLDRQVVEALKQMPERTRFMKGLFAWVGFRQTAVLYERTPRYKGSTTWNYWRLWNFALDGITSFSSLPLKIWSYLGITFSFLAFLYGSFLIIRTLIWGVDVPGYASLIVTILFLGGLQLISLGMIGEYLSRLYQEVKGRPLYLVRDCYGFDHDRPQPPLVKGGEGGI
>NZ_CP042326.1|WP_146294271.1|246010_248164_-|hypothetical-protein
MINKSSKIRLLKTESAIALVFVASIALYFCLFEIRLLNPFSFGWLLQGDWGQHFIGWMAFLNEPWHWPPGRFENLGAPVGNSIVYTDSLPLLAIPLKALLAGQVSLLQFQGWWFLICIILQGVISYVVLRRLTCSPSVSVVGALLLLCWPPMYHRLGHDTLVAHWLLLAAMGVALTVKRKTAVFLGVGLVATAFAIHAYLAAMVSLILGSRILAEIDIGSRWQTVKNFVARKSKTPPISPRTMFLMMTIILVLGVELYLLGYFESGSSGGGGFGVFSMNLNALWNPQTEDWSRFIPAQPFQTEQHEGFLYLGVGLMGVIVVAFALALWQSTTAQSSFDQRFKKLGVVAIAAFIFALSSRVTFGENVLFNIGLPPTVQDLLFLSTFQSSGRFGWITGLVLIVWSIFAIASRLGSKQTVMILSFALALQLVDLSSVPALMRDWTAPLPEKRAQYEELAAQWPSSLKHIRAIPPQDLDDEIQYQLGFAAILNGGTTNSFYFARPNNEAMEPFTERLKSDISQNQLRDDTMYLSSSHACYIAAGNKSHFKAHYSLVVVNGSWFADDPLPNDWRDRQVTTEENPSLAELIASCGEDCTMVLAIKDDGSKNLSEETIDALASKGAKKVLNLDFRDSYLIVLKDGNVVTEELASEESVEWSNQLDSLSVRVESAGFDAGAHAFIFLDDVNCSLNQRGFNGVYWQQEPKHIKRFHVDTYLPATER
>NZ_CP042326.1|WP_146294272.1|248299_250465_-|glycosyltransferase
MTNSNQPNQGFYPMAKLAIKKRQLIKKLKLWRKLWINRYQKNPTLQESNHDKKITYKEQLSYLYQVELDSFLLSDKNLSFPSTEKPLVSIILVLHNRAELTFQCLRSLMTVTLNAEHPCEIILVDNASQDQTNLLLERLCGVTKILNRENCHFLAAINQASKVAKGSYLLLLNNDAQILPGTLSAALDTYSSANDIGAVGGKIIFLDGQLQEAGSIIWNDGSCLGYGRGGNPFDYPYMFRRDVDYCSGAFLLTERNLFLEMGGFDEDYKPAYYEETDYCLRLWEQGKRVVYEPNAAIVHFEFASAQSNDSAINLQKAHQSIFTQKHSQQLANYHLPPAPENIVLARSHSRNSNHILYIDDRVPHAFLGSGFPRSRDILQALVDLNYCVTFYPLGFPEESWQEAYEDIPKVVELVLHQGIEGLEEFLNQRAHCYDLIFISRPHNMEILNPILNRNSQWFEKTRIIYDAEAIYALREVKKRQLLGKTVSQNEKKLLVQTEMQLAENADTVITVSEKEQEHFTNAGVNSVYTLGHTVDLKPTAKKFEERTGIVFVGAIHNINSPNADSVVWFAKEVFPLLQEKIGNDLTFKVVGFNKCQKIWDLQSDSLQVLGKVESLEEIYNCARVFVAPTRFAAGIPFKVHHAAAYGLPIVTTSMIASQIGWEDQQEVLVGDDPKTFAEKCTQVYFNQKLWESLRNAALNKIQLECSRDNFVQKVETIIKSQ
>NZ_CP042326.1|WP_146294273.1|250505_252812_-|glycosyltransferase
MIDIIIPIFNSYPLLKNCLESVVKHFDSEARLILLDDGSTDPNIAIYLEEIKKNAQFPVLIHQNQHNQGFVKTVNQGIQFSKENDIILLHSDTIVTQNWISKLKQAAYLKENIATVTPLSNNATIFSIPEFGKFNEIPKGYDIESFAQLVEETSCYLYPEVPVGHGFCLYIKRTTFNLLGDLDEDYNRSCGSEYDFCLRVLSYSLCNIMADDTFIYHSKNISDVNNQPFQGELLVQKYPFYWDLIQFYQKNKSNQIWDNIQVKTRQLRIGLDGRCLDDTFAGNQRYLIELIRAYTEKVTNIKVDLLVNNNRQNYVKEVLNTFGIKESPNLIEEASLQSNPKQELWDVFHITLQGTLLQNLATLRPHAKRIIITLQDFILAKNPLYFKDNNWFYYYYLIMQVYLASVDGVITISNFIKDELLSVNTFAKHENDLIHPERVKTVYHGINQRYDSISDVDESFCQEMGITPQKYLLFVGNDYLHKNLEATVKVLEKTQKLGYHYQLVIVGNTIAQGGSKQKLQESLEQETSLKENIFFLNHVSDEMLLKLYGNAGVLLYLSNSEGFGFPPLEAFAHGCPVITSNLTSIPEVVGEGAISFHPGEIEKIASTVIELIENQKQRDRAIKKGRKKVQEFDWRKTAKETINFYNHILRLPPRFQKNLPSLYLESQRLKDVQIQLRNTQNELQNTQHQLQHTKTQLQDTQHQLQHTKTQLQDTQHQLQHTKTQLQDTQHQLQDKEIEIETMKRSKFWKLREKWFKVKAWLRLAELEE
>NZ_CP042326.1|WP_146294274.1|252823_254056_-|glycosyl-transferase
MEKPPLHIFTTITANYFPKARVLAHSIKELHPSAKIYLVLCDVVPESVVLAEEPFDFIITLEQLKIPNFKSWLFQHNIIELCTAVKGIAFDYIFDKFDCKKLLFFDPDIVILSPLDSLIQKLDYHSVLLTPHQTVPESEREAIIDNEIHSLKVGVFNLGFLGIRNSEQGRKFIAWWRDRCLEFCYDDTPNGLFTDQKWVDLAPAFFSDYLVLQEPIYNVATWNLTHRRVTGSLKEGIYVNGELMCFYHFSGLDSGDQEFMLNKYGKESPVLFQLREWYLKECEHYGQREFSQIPFYYATFENGEVITQEHRLLYRHREDLKALYPNPFLTSDPDYSYYHWFLTYGDNEYIPSRYKCLQSAEQALQSKKEELAASQKEIELLKQRIQAMESSKFWRLRETWLWLKKKFRLT
>NZ_CP042326.1|WP_146294275.1|254085_255075_-|hypothetical-protein
MSNSTSPILIITGMHRSGTSLTASLLQSGGVDLGKDFNPSMESKVKEYFEDLAVVRFHENVLKAHHLPPEGWVHLEKITQIPEPYLTQAKEIIASKRDTTKGMTGWKDPRGTLFLDFWQSQLPEAQFIFLYRAPWEVVDSLYRRGDPIFTNSPQLALDFWLNYNAALINFYDRYPDKSLLLNIDRIINDPTVLSRAIAQKFRFNLSVQSEIYNSSLFQTDISHPLRCYLFQQFFPEASQLYQELQTRCEFCHSQHELSDLPMDRNWLLQDWLQMRVRQKQQQKIQQELSEKNARITELEELIKAMESSKFWKMRQFWMQLKQRFPFLNR
>NZ_CP042326.1|WP_146294276.1|255080_256424_-|ATP-binding-cassette-domain-containing-protein
MSEIAVLIENVSKCFYRYAHPVDRLKDLFFPQKTRADQFWALRNINLEIPKGETLGLVGRNGSGKSTLLQILVGTLTATSGRVKVGGRVSALLELGSGFNPEFTGRQNVFFNGRMLGLQQKEIEARFDEIASFADIGDFIDQPVKTYSSGMFIRLAFAVATSVKPDILVVDEALSVGDEVFQRKCFARIKSIQEHGGTVIFVSHSAGSIIDLCNYAALIDQGNLLMQGTPKLVVSKYHKLIYAPADKIDTIRQEIQAFDENTDRAQKSQSNASRESSPVSEDHYDPNLVPKSTLFYVSRGAEIQSPHLKNQAGEKVNLIHRNEYYIYSYEVRFTQAAYNVRFGMLIKTMSGVELGGAASHPPENAIEVITPNTIVQVDFTFYCSLLPGVYFLNAGVVGDIEGQESYLHRCIDAAMFRVQPETGLLATTIVDFQVQAKTTVNPHLIEI

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Crispr_ID: NZ_CP042326_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_2

244909-244988

Orphan

Consensus_repeat	Method
CCCCTCTTCGCCCCCCTTTACTAA	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP042326_2

>merge|NZ_CP042326|2|244909-244988|CRISPRCasFinder
CCCCTCTTCGCCCCCCTTTACTAATACCAACTCTGATAACAATAGTTACACTAGATCCCCCCTTCGCCCCCCTTTACTAA

>NZ_CP042326|2|2|244909-244988|CRISPRCasFinder
CCCCTCTTCGCCCCCCTTTACTAA	TACCAACTCTGATAACAATAGTTACACTAGAT
CCCCCCTTCGCCCCCCTTTACTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146294274.1\|252823_254056_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133037
NZ_CP042326.1\|WP_146294276.1\|255080_256424_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP042326.1\|WP_146294280.1\|259644_261276_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP042326.1\|WP_146294262.1\|223507_224875_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP042326.1\|WP_146294267.1\|229474_235288_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368653
NZ_CP042326.1\|WP_146294279.1\|258311_259388_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP042326.1\|WP_146294271.1\|246010_248164_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374042
NZ_CP042326.1\|WP_146294272.1\|248299_250465_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NZ_CP042326.1\|WP_146294270.1\|244430_244835_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP042326.1\|WP_146294277.1\|256438_257266_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP042326.1\|WP_146294264.1\|226344_227256_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|182184
NZ_CP042326.1\|WP_146294278.1\|257319_258315_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NZ_CP042326.1\|WP_146294265.1\|227258_227804_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP042326.1\|WP_146294263.1\|225196_226339_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|236649
NZ_CP042326.1\|WP_146294261.1\|220680_220995_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294268.1\|238193_238904_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294269.1\|239710_243766_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294275.1\|254085_255075_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226081
NZ_CP042326.1\|WP_146294266.1\|228128_229013_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP042326.1\|WP_146294273.1\|250505_252812_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146294276.1\|255080_256424_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	5.41137e-108
NZ_CP042326.1\|WP_146294271.1\|246010_248164_-\|hypothetical-protein	gnl\|CDD\|374042	pfam15711, ILEI, Interleukin-like EMT inducer. ILEI is a family of proteins found in vertebrates. It is heavily involved in the process of the transition from epithelial to mesenchymal tissue - EMT - during all of embryonic development, cancer progression, metastasis, and chronic inflammation/fibrosis. ILEI is upregulated exclusively at the level of translation, and abnormal ILEI expression, ie cytoplasmic over-expression instead of vesicular localization, is associated with EMT in human cancerous tissue. In order to induce and maintain the EMT of hepatocytes in a TGF-beta-independent fashion ILEI needs the cooperation of oncogenic Ras.	1.82196e-07
NZ_CP042326.1\|WP_146294262.1\|223507_224875_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.7264e-38
NZ_CP042326.1\|WP_146294267.1\|229474_235288_-\|hypothetical-protein	gnl\|CDD\|368653	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP). This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.	3.38973e-20
NZ_CP042326.1\|WP_146294279.1\|258311_259388_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.9488e-25
NZ_CP042326.1\|WP_146294263.1\|225196_226339_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|236649	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.	0
NZ_CP042326.1\|WP_146294270.1\|244430_244835_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.13098e-12
NZ_CP042326.1\|WP_146294277.1\|256438_257266_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	8.96165e-44
NZ_CP042326.1\|WP_146294264.1\|226344_227256_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|182184	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional.	8.29683e-136
NZ_CP042326.1\|WP_146294278.1\|257319_258315_+\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.02361e-47
NZ_CP042326.1\|WP_146294265.1\|227258_227804_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.95419e-110
NZ_CP042326.1\|WP_146294274.1\|252823_254056_-\|glycosyl-transferase	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	0.000360339
NZ_CP042326.1\|WP_146294272.1\|248299_250465_-\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	7.52003e-49
NZ_CP042326.1\|WP_146294280.1\|259644_261276_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.05899e-58
NZ_CP042326.1\|WP_146294275.1\|254085_255075_-\|hypothetical-protein	gnl\|CDD\|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	9.22321e-14
NZ_CP042326.1\|WP_146294266.1\|228128_229013_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP042326.1\|WP_146294273.1\|250505_252812_-\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	7.14023e-66

>NZ_CP042326.1|WP_146294270.1|244430_244835_+|GtrA-family-protein
MILLNWKLIKFLVAGATTTLVNVLLIFFFVEVMGLNTPSLRNLANIIAIELSVLLTFFIYRVWVWPMKEFNFRDILFRQIPMFHMVAGLAISLRVLILFPLLDYIGVNYIINTIIGIAVGSVLNYFVSDRFIFR
>NZ_CP042326.1|WP_146294269.1|239710_243766_-|hypothetical-protein
MVLTREQAQRFFDEDYYLNNNEDVRDAVNDGVVASGLTHFLQNGVAEGRAPNSLLNDFAPEDYLDAYPDVADAIDDGFIDSALEHFLAFGAAEGRLAGTGFDFFSSSSYLSANPDVANAVNEGVFNSALEHWINFGFAENRPGVEEGVGGDFMLTRGSDNLTGTSGDDVFVAPLEQDGGTVFNTFESGDVLDGRGGNNILEADLTDTAGAPSISSITDNIQEIYIRSQFQNTDAADNLLFEALQDSFDIDIETELGANGSFPVISDIDFSFIGGLQFLEADDLFSQGTNIDAENNSGVEQWWSENSRADLLIEDIRERSDDVTFGMRDTDPGVSYAAFFDPASLAADATDSSLTLTLEDVENPDSLENFPVNGLTFLLDGEEFEIRVPREDEDGNPINSSYDDFVAALNEELEATEGLENVQASLNPDNTITLTDGEGRTFEEDSFLFIDDQVPSRGTLTFNQEVGAPIEGDIATNIVLDGAGRTEEGGVMVVGSMGARGGIQEFDVEVGNTSWLQALSSTNNTLETVNVESNGSGALYLGLGERDGDDDITGDVGFSVPETVDDRLAQSGLVDVQTFNAAGFENELKLGAQLTAESIDKYLADAEEPVTFEYLLGDGGSNLNLGISPTLSLDPDFELEIVGGAQDDRINLSDATVKENISIDGGDGENTLEVNTDTDPNTVPGSNFNEVENIQRFVIAGNNFDPGPQTNQTSQNIEEGNLSGLEEIIIATEAFFDTTGDGNPNTFLPADTTVSQFEADTDIIISGKNQTIGSGNSNDDQDFGTIAIEDAPESELELILDNTARVNGELFVAELDLEEDDNVETLELVSDGRRDTENSVLNAVLPNVTTLELVGSQDFNIHVSSMAENDEPLEIDGSELGEEDDEGDFQPATLTLALNAELLTEGNDDTLTGGEGEDDSLILYGNPEDDVNPDVSDFESVQFGLRLDRDEDLAEETPFQGADQAEFSGTYDASGFGAFYDIQNLDGDLRLEGLPDGVTVRIYAPDADVFTDVTNIELIADGENDNIDITFVDDTGINRGNNPEGTGWGNLEEPDGSGGFQPILDDNNQPVQNNILTIQDYSDIEIELDSGGSPYQYLFQLELLDGEGEARFDNTTPNNDFDADEFLPDVLTITGGDSGLNGGDRLILANAADRSADQESTLDPALNTIDISGFGGNFASGFNTADADGDDTTIIGNEYNLFFELPGGDDFNTRFVFEEDAASESTIWVINNFRAIDDGDVTVDDVTELDLTAFGINNTFTGIDVTPFGDRTLSDTDSDFDPNALNDPDDIDTSDFDAAFPELIEQLGFDDLADFITDGANDGVVIDSTEGLDFQIVLPGVDEGDLGTDNIV
>NZ_CP042326.1|WP_146294268.1|238193_238904_+|hypothetical-protein
MVNLSPQFFKQSMEVQEIAITLVVKGLNPAMLTLENCHAWGVIPEDWELSKNPMISSQQARLNFKNGVNVMAKPHQINFAEPIPVKGVEGMKFAAVAKQFVDQLTQVNYQQLRIEPRLIIVFNHQENDLRNYPREFILDYLMASGPWLNVGERSPQIAVNFTYQFPEYQLQLNIQEGYSQQSNQSSVRGLVFSGSFIYPINEKKSRESIKGEIDTWSNQLNQFQTIVKEQFLGKKG
>NZ_CP042326.1|WP_146294267.1|229474_235288_-|hypothetical-protein
MSDPANLEFSLDPLFNTWQEFLTEAATSGRLISAAQEALLLDDTPDSLETLVTQWQEGDFSQLPEIEVLSDSNISGAAGAYARSNETIYLNEDWLASASEDGAMRVLTEELGHHLDNVVNEENTPGDEGAIFSALALGEELTETELETLRETDDTGYVTVDGEEIVVEQHNSSLVESFNGFQRIPAATPTPSRRTSGEWRNDRAFAALKDDGSVVTWGVSARGGNSSEVADELSSGVQQIFSTKGAFAALKEDDSVVTWGGGGAGGNSSEVADELSSGVEQIFSTDNAFAALKDDGSVVTWGSNSGGGDLTGEGMQFVTGVPGGELNNVQDVFSTKGAFAALKGDGSVVTWGDDFEGGNSIDVANELNSGVEQIFSTDSAFAALKDDGSVITWGAGAASNSIDVSGVEQIFSNGWAFAALKEDGSVVTWGDDDWGGDSSEVADDLSSGVEQIFANRWAFAALKEDGPVVTWGADDNGGDSSEVADDLSSGVEQIFSTNSAFAALKDDGSVVTWGDSSRGGKSSIVSSEFDFDEQEQVIEEIEDVSEQLESGVKDIFSNERAFAALKGDGSVVTWGDDDWGGDSSEVADDLSSGVEQIFSTRFAFAALKEDGSVVTWGRDDEGGDSSDVADELSEGVATIASPFVEGELDPDDPPDDPDDPDDPTAPEIIPQDPFSININTVAEGDTLFTVEANPGESEEDDLVFSIVDDIPEFSIDFNSGEVILEEEETVQEGDSFDFEVIVEDPESGITSEPEEFSVEFTSDDPPDDPEPDEDGVITIEPFQLRAEQGFDEIEPGHQRAVGNIELGLIPDNDQSFQPWLEADGELFYKLDPTQATIGGEAIIEVSDQLRDQFPDQFPELPPLFDGEFDFSFEPEQNPSDGITVLEQQEEFNFNAFGLDLELDSFELTAFPLEPALQLQGEADLTIEAFNDFGFSADLTDSNRLQISSSGLDVSGKFGAENIGLGIGDWGLNEVDVEIDTFDGIEVEGEGGIGTPFGNIEGSFALDLEESGLGIFDQLGLGASELNQPIANTGVFLQEISGEVGNLGDGFPSLKGDLALTAGPDPQQLFDDWSFGFELDLDVPNLVELGLEGGFSTSPTQTKLEGGADLEILGGSLLSADIDAKVELLQSASGERDQATFNLDGDFDFLQNFIDFKGMIRASATQEEGSSPEFGLVAQGNSTVNVPDVSGLQPDWLPDWISFDNFAGTELGNGEFRFNFGTENAAEDNYIAGWGEIEVPSLADIFSFGEQESDPIGIGLRLNFDGSVTTIGSNELDEVEEEDDVRSLNTLSSNSASLQSNTEVQSNEPSLEESATFEIDDETAAVIFNAQWDDSEAAPAFALEDPNENRLTPEEEDALQPVVEYSDETSQVIAADFQQLDAGDWRFGTMDEPPEGLELSAFDLATSVGLELNLAQDSPEMVVPGETIEIDYEVGNLAEEANLELFYDTQEDTLTGESIDQITVGSNDSGTLEWEIPEGLSNNDYYIYGVIEGETQVPEWEYAPETITVAQPELEIEDVTHQVSAEEDTTIDFEVTLTEPAQDPVTVNYTTNNGTAVADSDFEQKEGELTFEENQQTATIEIDVFSSPDLLRETSFSLELSNAENAFIPEGENRAVATPDTFNLGGDTPNVVEGTLEELDEKSIIGFEADDTLRVRNTSFDEEQLTVTEGSTILEIDANDDGEVDSTITLEGDYSDGEFLTEQVEDDTEIFFSASPEPEPEPDPDPDPEPEPDPDPDPEPEPEPDPDPDPEPEPEPEPEPEPDPDPDPEPDPEPEPEPEPEPEPELDLPDIPLAVNSESIFNESLYLDQNPDVLQAVENDDFDSGLDHFQQFGLGENRIPTDILQNFDPTSYLSENSDVADAVGEDEIFQSALDHYLNHGFKEPREGSNIPYDEAFYLNEYSDVLDAVENDDFGSGFEHFALHGAEEGRAATQELLEF
>NZ_CP042326.1|WP_146294266.1|228128_229013_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKQRKGIILAGGNSTRLYPVTQVISKQLLPVFDKPMIYYPLCTLMMAGIREILIISTPEDTPLFQKLLGDGSQWGLQLEYAVQAQPNGLAEAFVIGADFVKDHPSALILGDNIFHGHDLGALLQAANKRPSGATVFAYAVTDPERYGVVGFDETGHATSLEEKPKQPRSRYAVTGLYFYDEKVIDIAKGIQPSARGELEITDVNLAYLEQGALNVEVMGRGMAWLDTGTHESLNAASAFIETLETRQGLKVCSPEETAYRMGFIDAEGVRLLAEPLAKNGYGQYLLQMLDDNIF
>NZ_CP042326.1|WP_146294265.1|227258_227804_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MHVTPTAIPEILLIEPTVFGDERGFFMETWQRCKFAEAGIDYDFVQDNHSRSVYGTLRGLHYQICKPQGKLVRVTRGEVFDVAVDLRQHSPTFGQWVGEMLSSDNKRMLWVPPGFAHGFYVTSDTAEFQYKCTDYYSPECERSIHWNDPKIGIAWPIQGLPLVSEKDEQADLFEHAEYFAY
>NZ_CP042326.1|WP_146294264.1|226344_227256_+|dTDP-4-dehydrorhamnose-reductase
MKILLLGCQGQVGWELQRSLAPLGEVIALIRHNTDGLCGDLNQPTALARTIKTLTPNVIVNAAAYTAVDQAESESDLAQAINAVGPSVLARETQKLGALLVHYSTDYVFDGSGAKPWREDDRTVPLNVYGQTKRAGERAIQESDCRHLIFRTSWVYASRGKNFIRTMLRLAAERDALQVIDDQYGAPTGAALIADVTAQALPLALRKPELEGLYHLAASGETTWHGYACRVIEQARQAGWPVKIAEQDVWPIATDAFPVVAQRPNNSRLDCTRLEEAFGLYLPAWQRGVDHTLAEILDCGGIA
>NZ_CP042326.1|WP_146294263.1|225196_226339_+|dTDP-glucose-4,6-dehydratase
MKILVTGGAGFIGSAVVRQFIAETEHTVINVDALTYAGNLESLSDVRDHPRHIFEHVDITNHDSLTSVFQKHQPGAVMHLAAESHVDRSIDGSAEFINTNIVGTYLLLECSREYWNRLPANDRQSVAKGEKSGGVTKESFRFHHISTDEVYGDLTVNDPPFTEETPYAPSSPYSASKASSDHLVRAWYRTYGLPIIVTNCSNNYGPYQFPEKLIPLMILNALDCKPLPVYGRGENIRDWLYVEDHARALRYVLAHGVVGRTYNIGGLNEKTNLEVVNSICDLLDELRPLSGLPEISQAPDKLSKSYKSLITFVTDRLGHDHRYAIDNSRIANELGWQPLESFETGLRKTVQWYLDNTTWVERVRLGTYRDWIATEYTKGG
>NZ_CP042326.1|WP_146294262.1|223507_224875_-|transposase
MFTLSYEFKLEPNQLQIDMIEQTLGVCRTVWNYALRERKDWINSRKCPVNACSIEKEYIIPADEPYPSYSRQAKALTEAKKDSERLKSVNAQVLQQVLRTLDRAFSDMKSRGFGFPRFKNKYRLRSYLIPQIRGEVLKGNQIKLPQLGWVRFRKSRDIPEGFKVKQVRVIRKASGYFVMLSLQLDVEVPQPFPHGHPRGLDLGFDKFVATSDGLEVKRPRFLESLQRKLRLLQRRLKNKQKGSNNRHKLNRKIARVHQRISDARKNWHFQLAHQLCDGAGMIFVEDINFRSWQRGMLSKHAADAGFGQFVNILEWVCWKRDVYFAKVDKDGTSQECSQCGAHTGKKTLDVRVHHCPECGYIGSRDVVSAEVIRNRGLTRARVSRASSSDPSAGFPRIGKRSLESRPKGLSDLGQRLENKQIACGGDLTGMEETSSSQEPETGNLVVRLGISRHSA
>NZ_CP042326.1|WP_146294261.1|220680_220995_-|hypothetical-protein
MKKYPQLMRLIWSYYRENKSESERLEVLKKCKIKRRWGTFRVDCPSKEVANLIRDIIPLLELPIIKLRLAKRIKIFIKGQLFENYTVGSEGLSPADAKKFLSNY
>NZ_CP042326.1|WP_146294271.1|246010_248164_-|hypothetical-protein
MINKSSKIRLLKTESAIALVFVASIALYFCLFEIRLLNPFSFGWLLQGDWGQHFIGWMAFLNEPWHWPPGRFENLGAPVGNSIVYTDSLPLLAIPLKALLAGQVSLLQFQGWWFLICIILQGVISYVVLRRLTCSPSVSVVGALLLLCWPPMYHRLGHDTLVAHWLLLAAMGVALTVKRKTAVFLGVGLVATAFAIHAYLAAMVSLILGSRILAEIDIGSRWQTVKNFVARKSKTPPISPRTMFLMMTIILVLGVELYLLGYFESGSSGGGGFGVFSMNLNALWNPQTEDWSRFIPAQPFQTEQHEGFLYLGVGLMGVIVVAFALALWQSTTAQSSFDQRFKKLGVVAIAAFIFALSSRVTFGENVLFNIGLPPTVQDLLFLSTFQSSGRFGWITGLVLIVWSIFAIASRLGSKQTVMILSFALALQLVDLSSVPALMRDWTAPLPEKRAQYEELAAQWPSSLKHIRAIPPQDLDDEIQYQLGFAAILNGGTTNSFYFARPNNEAMEPFTERLKSDISQNQLRDDTMYLSSSHACYIAAGNKSHFKAHYSLVVVNGSWFADDPLPNDWRDRQVTTEENPSLAELIASCGEDCTMVLAIKDDGSKNLSEETIDALASKGAKKVLNLDFRDSYLIVLKDGNVVTEELASEESVEWSNQLDSLSVRVESAGFDAGAHAFIFLDDVNCSLNQRGFNGVYWQQEPKHIKRFHVDTYLPATER
>NZ_CP042326.1|WP_146294272.1|248299_250465_-|glycosyltransferase
MTNSNQPNQGFYPMAKLAIKKRQLIKKLKLWRKLWINRYQKNPTLQESNHDKKITYKEQLSYLYQVELDSFLLSDKNLSFPSTEKPLVSIILVLHNRAELTFQCLRSLMTVTLNAEHPCEIILVDNASQDQTNLLLERLCGVTKILNRENCHFLAAINQASKVAKGSYLLLLNNDAQILPGTLSAALDTYSSANDIGAVGGKIIFLDGQLQEAGSIIWNDGSCLGYGRGGNPFDYPYMFRRDVDYCSGAFLLTERNLFLEMGGFDEDYKPAYYEETDYCLRLWEQGKRVVYEPNAAIVHFEFASAQSNDSAINLQKAHQSIFTQKHSQQLANYHLPPAPENIVLARSHSRNSNHILYIDDRVPHAFLGSGFPRSRDILQALVDLNYCVTFYPLGFPEESWQEAYEDIPKVVELVLHQGIEGLEEFLNQRAHCYDLIFISRPHNMEILNPILNRNSQWFEKTRIIYDAEAIYALREVKKRQLLGKTVSQNEKKLLVQTEMQLAENADTVITVSEKEQEHFTNAGVNSVYTLGHTVDLKPTAKKFEERTGIVFVGAIHNINSPNADSVVWFAKEVFPLLQEKIGNDLTFKVVGFNKCQKIWDLQSDSLQVLGKVESLEEIYNCARVFVAPTRFAAGIPFKVHHAAAYGLPIVTTSMIASQIGWEDQQEVLVGDDPKTFAEKCTQVYFNQKLWESLRNAALNKIQLECSRDNFVQKVETIIKSQ
>NZ_CP042326.1|WP_146294273.1|250505_252812_-|glycosyltransferase
MIDIIIPIFNSYPLLKNCLESVVKHFDSEARLILLDDGSTDPNIAIYLEEIKKNAQFPVLIHQNQHNQGFVKTVNQGIQFSKENDIILLHSDTIVTQNWISKLKQAAYLKENIATVTPLSNNATIFSIPEFGKFNEIPKGYDIESFAQLVEETSCYLYPEVPVGHGFCLYIKRTTFNLLGDLDEDYNRSCGSEYDFCLRVLSYSLCNIMADDTFIYHSKNISDVNNQPFQGELLVQKYPFYWDLIQFYQKNKSNQIWDNIQVKTRQLRIGLDGRCLDDTFAGNQRYLIELIRAYTEKVTNIKVDLLVNNNRQNYVKEVLNTFGIKESPNLIEEASLQSNPKQELWDVFHITLQGTLLQNLATLRPHAKRIIITLQDFILAKNPLYFKDNNWFYYYYLIMQVYLASVDGVITISNFIKDELLSVNTFAKHENDLIHPERVKTVYHGINQRYDSISDVDESFCQEMGITPQKYLLFVGNDYLHKNLEATVKVLEKTQKLGYHYQLVIVGNTIAQGGSKQKLQESLEQETSLKENIFFLNHVSDEMLLKLYGNAGVLLYLSNSEGFGFPPLEAFAHGCPVITSNLTSIPEVVGEGAISFHPGEIEKIASTVIELIENQKQRDRAIKKGRKKVQEFDWRKTAKETINFYNHILRLPPRFQKNLPSLYLESQRLKDVQIQLRNTQNELQNTQHQLQHTKTQLQDTQHQLQHTKTQLQDTQHQLQHTKTQLQDTQHQLQDKEIEIETMKRSKFWKLREKWFKVKAWLRLAELEE
>NZ_CP042326.1|WP_146294274.1|252823_254056_-|glycosyl-transferase
MEKPPLHIFTTITANYFPKARVLAHSIKELHPSAKIYLVLCDVVPESVVLAEEPFDFIITLEQLKIPNFKSWLFQHNIIELCTAVKGIAFDYIFDKFDCKKLLFFDPDIVILSPLDSLIQKLDYHSVLLTPHQTVPESEREAIIDNEIHSLKVGVFNLGFLGIRNSEQGRKFIAWWRDRCLEFCYDDTPNGLFTDQKWVDLAPAFFSDYLVLQEPIYNVATWNLTHRRVTGSLKEGIYVNGELMCFYHFSGLDSGDQEFMLNKYGKESPVLFQLREWYLKECEHYGQREFSQIPFYYATFENGEVITQEHRLLYRHREDLKALYPNPFLTSDPDYSYYHWFLTYGDNEYIPSRYKCLQSAEQALQSKKEELAASQKEIELLKQRIQAMESSKFWRLRETWLWLKKKFRLT
>NZ_CP042326.1|WP_146294275.1|254085_255075_-|hypothetical-protein
MSNSTSPILIITGMHRSGTSLTASLLQSGGVDLGKDFNPSMESKVKEYFEDLAVVRFHENVLKAHHLPPEGWVHLEKITQIPEPYLTQAKEIIASKRDTTKGMTGWKDPRGTLFLDFWQSQLPEAQFIFLYRAPWEVVDSLYRRGDPIFTNSPQLALDFWLNYNAALINFYDRYPDKSLLLNIDRIINDPTVLSRAIAQKFRFNLSVQSEIYNSSLFQTDISHPLRCYLFQQFFPEASQLYQELQTRCEFCHSQHELSDLPMDRNWLLQDWLQMRVRQKQQQKIQQELSEKNARITELEELIKAMESSKFWKMRQFWMQLKQRFPFLNR
>NZ_CP042326.1|WP_146294276.1|255080_256424_-|ATP-binding-cassette-domain-containing-protein
MSEIAVLIENVSKCFYRYAHPVDRLKDLFFPQKTRADQFWALRNINLEIPKGETLGLVGRNGSGKSTLLQILVGTLTATSGRVKVGGRVSALLELGSGFNPEFTGRQNVFFNGRMLGLQQKEIEARFDEIASFADIGDFIDQPVKTYSSGMFIRLAFAVATSVKPDILVVDEALSVGDEVFQRKCFARIKSIQEHGGTVIFVSHSAGSIIDLCNYAALIDQGNLLMQGTPKLVVSKYHKLIYAPADKIDTIRQEIQAFDENTDRAQKSQSNASRESSPVSEDHYDPNLVPKSTLFYVSRGAEIQSPHLKNQAGEKVNLIHRNEYYIYSYEVRFTQAAYNVRFGMLIKTMSGVELGGAASHPPENAIEVITPNTIVQVDFTFYCSLLPGVYFLNAGVVGDIEGQESYLHRCIDAAMFRVQPETGLLATTIVDFQVQAKTTVNPHLIEI
>NZ_CP042326.1|WP_146294277.1|256438_257266_-|ABC-transporter-permease
MGYLQPKKYHFQQQWLKFDLLKMLVKRELEDRYKGSLLGNFWPLLTQLSHLLIYTYVFSIVLQVKLSLAGLPEDDSLIFGFWLFAGLVPWMAFTGGLVEASNTVVAQTNLVKKVVFPLSLLPLVPIFAALVESAFGLVTLIVLYALIQGTLHETLVFLPLVWMPQILFTTGLAYLTAALTVFLRDIPQTLSVIFHLWFYLTPIVYPPNVIPEQFQDVVFWVNPMAIITQLYRDTIIIGNVEHWGQLGVLTIISLLVFYGGFWTYQRLRPGFADVL
>NZ_CP042326.1|WP_146294278.1|257319_258315_+|glycosyltransferase
MNIVFGWLGPQTARLYWGRVLIDVVIVNWNAGSQLSECVESVLTYALDRVAKVIIVDNGSTDRSTDQVINMEGIEVIRAGKNLGFAAACNLGVKAGFSPYLLFLNPDTRVEAQSLTRPLEFMEQPENCDVGICGIQLRNDDDRVSYSCSRFPTLARLVLGALGVEKVPLFRRVGMQMSEWEHDETRLVDQVMGAFFMIRRDLFESLGGFDEQFFVYFEEVDLSFRACKAGWQSMFLADAQAFHAGGGTSRQVKAIRLFYSLRSRLLYGFKHFPRWQGWVLVGITSVIEPLTRTLWCLAQGDIAGVRDTWSAYRMLWRGMGRIVSGDGRFIP
>NZ_CP042326.1|WP_146294279.1|258311_259388_+|glycosyltransferase
MRVLLLSRYDDLGASSRVRYLQYLEEFKRQGWEVEISPLFSNTYINALYAGAGRERLWEVMRGYVSRFLVLLRANQFDVLIIQKELFPFLPAWFERILHRMQILYIVDYDDAQFHRYDRHSNTIIRGLFRHKIDTVMLHAELVIAGNPYIAERARTAGARQIEIIPTVVDTERYHPAVSHASSPPIVGWIGTPETSCYLLPLLPVFERLQQEMDVRFVAVGASGEDFAGTSVEAWPWSELTEVSSIQQFDIGIMPLEDSPWERGKCGYKLIQYMACAKPVVASPVGVNMKIVEPGKNGYLAETLEDWEKLLRVLLIDVDARNRMGCVGREKVVEQFSLQSQAQRFINCVERVVNSGLF
>NZ_CP042326.1|WP_146294280.1|259644_261276_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSQSNNKNPQLGSNGNGNGKISLKSAKIAQSETTTPTTYDPYEEDFDQSVILRQSPVWPRIALWTILLVITGGLAWSYFAKIEQVVEAQGQLKPTGDVKEVQSPVQGVVREIATNETIQDGENPNRQGETFEDGDLVEEGQILLHYDSETAESRLNSLENIRDELQQENSFYRQIMETATTSESAVEAEIDRLDIPTEIAMLARNRTALEDENRLYRAQAGIAEPDDNLSVDELERLEASTQEASTRREAAFFEGQGLQRELRQVQVQLADAQTQLSTEEEKLEKLRTLFEEGGISEFRYIEQRQTVEQQQAQVEQLKEEEQRVESNISRADQQLQNTEATTRKDLFDNIARNKQQIAEIDSQLTRSLNENQRRISELESEINEVEKQLDYQNLRAPISGKIFNMEVSPGSVVNSSERVMKIVPQEDLVAEVFITNQDIGFVQEGMPVDVRIDSFPFSEYGDIEGELISLGSDALPPDETHDFYRFPAKIRLDSQTLDARGRDLPLQSGMSISTNIKLREDRRVISLFLERFTQEVDNLKNVR

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Crispr_ID: NZ_CP042326_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_3

534434-535189

TypeIII

Consensus_repeat	Method
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	CRISPRCasFinder
GTTTCCAACAAAGCGACTTNACCCAGTCGCCGGGAC	CRT
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGA	PILER-CR

10 spacers

cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm6

The CRISPR arrays of NZ_CP042326_3

>merge|NZ_CP042326|3|534434-535189|CRISPRCasFinder,CRT,PILER-CR
GTTTCTAACAAAGCGACTTAACCCAGTCGCCAAGACCCTCTCCGATAAAGGAGGTAATAAGGGCATTGACCGTGTCCGGTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGACTGCCTGCCTATGCAGGAACAAGCCCACTCCCTCAGTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGACTCGGCAATTGTTAGGGCATACCGTGCTATCGCGTACGTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAACATAACAGAAAAAAATGTGTTACCCGAATGGTTAGTGTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAACTCCGAATCGAAGTGGTTGACTTTGCCATTGAGCCGTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGACGATTGATGATTACAACTGGATCGCCGTCTTTTATAAGTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGACATGTAATGATAAGTCCAAACAACTTGGAAACATTGGGTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGACATATCTAAAACATCTTCTTGATAATTCTCAGGAAGTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGACCAGAGGCTGATTCAGAGCTGGTAGAGGCTCTCTAGTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGACTACCAGTTCGTGGAGCGGGAATACCGCTTTATGGTAGGTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC

>NZ_CP042326|3|3|534434-535189|CRISPRCasFinder
GTTTCTAACAAAGCGACTTAACCCAGTCGCCAAGAC	CCTCTCCGATAAAGGAGGTAATAAGGGCATTGACCGTGTCCG
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGAC	TGCCTGCCTATGCAGGAACAAGCCCACTCCCTCA
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGAC	TCGGCAATTGTTAGGGCATACCGTGCTATCGCGTAC
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAA	CATAACAGAAAAAAATGTGTTACCCGAATGGTTAGT
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAA	CTCCGAATCGAAGTGGTTGACTTTGCCATTGAGCC
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGAC	GATTGATGATTACAACTGGATCGCCGTCTTTTATAA
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAC	ATGTAATGATAAGTCCAAACAACTTGGAAACATTGG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	ATATCTAAAACATCTTCTTGATAATTCTCAGGAA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	CAGAGGCTGATTCAGAGCTGGTAGAGGCTCTCTA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	TACCAGTTCGTGGAGCGGGAATACCGCTTTATGGTAG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC

>NZ_CP042326|3|1|534434-535189|CRT
GTTTCTAACAAAGCGACTTAACCCAGTCGCCAAGAC	CCTCTCCGATAAAGGAGGTAATAAGGGCATTGACCGTGTCCG
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGAC	TGCCTGCCTATGCAGGAACAAGCCCACTCCCTCA
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGAC	TCGGCAATTGTTAGGGCATACCGTGCTATCGCGTAC
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAA	CATAACAGAAAAAAATGTGTTACCCGAATGGTTAGT
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAA	CTCCGAATCGAAGTGGTTGACTTTGCCATTGAGCC
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGAC	GATTGATGATTACAACTGGATCGCCGTCTTTTATAA
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGAC	ATGTAATGATAAGTCCAAACAACTTGGAAACATTGG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	ATATCTAAAACATCTTCTTGATAATTCTCAGGAA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	CAGAGGCTGATTCAGAGCTGGTAGAGGCTCTCTA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	TACCAGTTCGTGGAGCGGGAATACCGCTTTATGGTAG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC

>NZ_CP042326|3|1|534512-535188|PILER-CR
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGA	CTGCCTGCCTATGCAGGAACAAGCCCACTCCCTCA
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGA	CTCGGCAATTGTTAGGGCATACCGTGCTATCGCGTAC
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGA	ACATAACAGAAAAAAATGTGTTACCCGAATGGTTAGT
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGA	ACTCCGAATCGAAGTGGTTGACTTTGCCATTGAGCC
GTTTCCAACAAAGCGACTTTACCCAGTCGCCGGGA	CGATTGATGATTACAACTGGATCGCCGTCTTTTATAA
GTTTCCAACAAAGCGACTTCACCCAGTCGCCGGGA	CATGTAATGATAAGTCCAAACAACTTGGAAACATTGG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGA	CATATCTAAAACATCTTCTTGATAATTCTCAGGAA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGA	CCAGAGGCTGATTCAGAGCTGGTAGAGGCTCTCTA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGA	CTACCAGTTCGTGGAGCGGGAATACCGCTTTATGGTAG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146294509.1\|529490_529955_-\|photosystem-II-protein-PsbQ	unknown	unknown	gnl\|CDD\|274404
NZ_CP042326.1\|WP_146294517.1\|541066_542761_+\|RAMP-superfamily-protein	unknown	unknown	gnl\|CDD\|213662
NZ_CP042326.1\|WP_146294512.1\|532416_534171_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|215160
NZ_CP042326.1\|WP_146294513.1\|537158_538154_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP042326.1\|WP_146294506.1\|526133_527198_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP042326.1\|WP_146294518.1\|543751_546334_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_CP042326.1\|WP_146294505.1\|525110_526121_-\|beta-ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|215185
NZ_CP042326.1\|WP_146294510.1\|530031_530883_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|178633
NZ_CP042326.1\|WP_146297248.1\|535665_537168_+\|CRISPR-associated-protein-Cas10	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP042326.1\|WP_146294511.1\|531085_532396_+\|response-regulator	unknown	unknown	gnl\|CDD\|226229
NZ_CP042326.1\|WP_146297249.1\|539941_541051_+\|hypothetical-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NZ_CP042326.1\|WP_146294519.1\|547893_550038_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341483
NZ_CP042326.1\|WP_146294508.1\|528432_529494_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP042326.1\|WP_146294515.1\|538965_539358_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NZ_CP042326.1\|WP_146294516.1\|539368_539902_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP042326.1\|WP_146294504.1\|524209_525094_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NZ_CP042326.1\|WP_146294503.1\|521063_524114_+\|COG1615-family-transporter	unknown	unknown	gnl\|CDD\|235047
NZ_CP042326.1\|WP_146294507.1\|527404_528436_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|226985
NZ_CP042326.1\|WP_146294514.1\|538153_538966_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_CP042326.1\|WP_146294520.1\|550001_551402_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379160

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146294509.1\|529490_529955_-\|photosystem-II-protein-PsbQ	gnl\|CDD\|274404	TIGR03042, hypothetical_protein, photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology. [Energy metabolism, Photosynthesis].	3.98529e-43
NZ_CP042326.1\|WP_146294517.1\|541066_542761_+\|RAMP-superfamily-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	9.79122e-05
NZ_CP042326.1\|WP_146294512.1\|532416_534171_-\|arginine--tRNA-ligase	gnl\|CDD\|215160	PLN02286, PLN02286, arginine-tRNA ligase.	0
NZ_CP042326.1\|WP_146294513.1\|537158_538154_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.63031e-07
NZ_CP042326.1\|WP_146294506.1\|526133_527198_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	3.5474e-163
NZ_CP042326.1\|WP_146294518.1\|543751_546334_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP042326.1\|WP_146294505.1\|525110_526121_-\|beta-ketoacyl-ACP-synthase-III	gnl\|CDD\|215185	PLN02326, PLN02326, 3-oxoacyl-[acyl-carrier-protein] synthase III.	4.48543e-169
NZ_CP042326.1\|WP_146294510.1\|530031_530883_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|178633	PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.	1.98428e-40
NZ_CP042326.1\|WP_146297248.1\|535665_537168_+\|CRISPR-associated-protein-Cas10	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.43596e-30
NZ_CP042326.1\|WP_146294511.1\|531085_532396_+\|response-regulator	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	0.00017966
NZ_CP042326.1\|WP_146297249.1\|539941_541051_+\|hypothetical-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.65338e-41
NZ_CP042326.1\|WP_146294519.1\|547893_550038_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341483	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains proteins similar to iron-containing alcohol dehydrogenase (Fe-ADH), most of which have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.	0.00209496
NZ_CP042326.1\|WP_146294508.1\|528432_529494_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.70147e-57
NZ_CP042326.1\|WP_146294520.1\|550001_551402_+\|hypothetical-protein	gnl\|CDD\|379160	pfam13395, HNH_4, HNH endonuclease. This HNH nuclease domain is found in CRISPR-related proteins.	1.11515e-08
NZ_CP042326.1\|WP_146294516.1\|539368_539902_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	5.36553e-24
NZ_CP042326.1\|WP_146294504.1\|524209_525094_-\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	4.71961e-112
NZ_CP042326.1\|WP_146294503.1\|521063_524114_+\|COG1615-family-transporter	gnl\|CDD\|235047	PRK02509, PRK02509, hypothetical protein; Provisional.	0
NZ_CP042326.1\|WP_146294507.1\|527404_528436_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	2.0692e-59
NZ_CP042326.1\|WP_146294514.1\|538153_538966_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.46147e-21

>NZ_CP042326.1|WP_146294512.1|532416_534171_-|arginine--tRNA-ligase
MYSLLEQLRQHFSQALVNAFGEEYADTDPLVTLAAKPEFGDYQSNIALSLAKPLKQKPRDTAQQIIDHLDLSELCEPPEIAGPGFINLRLKPSYLESQLKTISQDSQLGAEKAETPQNVIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREAYPEALTKADALAIGDLVTLYKEAKKRFDEDETFQKTAREEVVKLQKGAPDSVQAWELLCEQSRREFQVIYDLLGVELTERGESFYNPFLSEVVQELEAKGLVEEDQGAKCVFLEGYTNKSGERLPLIIQKSDGGYNYATTDLAAIRYRIREDGAQRVIYVTDAGQASHFDQVFQVAKRAGWVSDDVELVHVPFGLVQGEDGKKLKTRSGDTIRLRDLLDEAIARSRQDLEQRFQEEGRNESEEFIAKTAKIVGISAVKYADLSRNRTSNYVFSFDKMLALQGNTAPYLLYAYVRVQGISRKGNIDWETLNKQNITLEDNSELVLAKHILQLSDILKEVEKDLLPNRLCQYLFELSQKFNQFYDRCPILQAEADKRASRLMLADLTARTLKLGLSLLGIEVLERM
>NZ_CP042326.1|WP_146294511.1|531085_532396_+|response-regulator
MTSVLEQRLTCNRIFRHLFFYHSQQFTGKVEISGFQNQKWCFYFMLGSLIWAYGGSHPLRRWRRQFYAATGQLPQMSRINQNGECWDCTELRRLSQNRHLSSEQIQNIIKGVLLEVLFDAVQAFELPIYEHYYFKEQTKVLTITELTGIGDGIQVKCQEDIHPDPYYRLPRSLLPTLKELQETTYQTWKQWVKAGLATCSPNEAPLLVNPQALKPIVSDKVYRNLSKALQGRTTLRDLAFKFKHNGNFLKSGCALAPYVLKGLVQFEKIQDIAVSKISKDSYSTITFLDSVTDSNLLLAIDSNADNHNLLSAIALEQGYEFQVFSDSLKAILELQDNQHFQPKFIFFNPDNSIIKETEFCKILKRLGISDQVPIVIYTNEEIQNKEVKEIFSLGANEVIDSKLFTYYHLSSLLVKYRNSQQEKVLDKQTIVQNTVS
>NZ_CP042326.1|WP_146294510.1|530031_530883_-|alpha/beta-fold-hydrolase
MTNLEEKTIEIDQQQWFYRQASPKNESEAPPVVLLHGLLAHSYSWRILLEDIAEMGLMGYAPDWLGEGSSAKPSRREFPYTPEAYLAALEKLFHSLELSRFHLVVQGFVGSIGLQYAFRHPEQIERLVILNTPLSSSVRLPWLMRQWAFPLMGEMLTQDPLLVDRTLEKGSGYVISDKNLNIYREPFLKNSQAGRSLVATIKNLNLSQAMAEIEAGWKEWDKPTQIIWGMGDPWLSADVPKALADEYNHIRFVKLEEGKHYPQEHCSDEISPILLTFLRQQTA
>NZ_CP042326.1|WP_146294509.1|529490_529955_-|photosystem-II-protein-PsbQ
MLRKRSILSLLMALVAIVLVSCGGGNENTAPPTYSSEQVEQIQQALPPVKQARQRLTQLEPLLQKEKWSDAYSLLHGPLGGLRREMSYVTRNLLPTDQEKAREYAKALFEDIEKIDAAVEAEVASRALQSYDRALNDFDQYLSLIPEPKPEENS
>NZ_CP042326.1|WP_146294508.1|528432_529494_-|FAD-dependent-oxidoreductase
MKRIMIVGGGIVGATIAYELSKNSEFQITIIDKDVPAQASTGAALGLLFGVISQKKQGRAWELREISLRRYSQLLVELQEQTGETIPHLQGLIHLCFSPEEMAKWQELASLREQQGWQLELWNQSQLQAACPTLNTSQMVGAVYSPQDLQVNPQALTTTLLKAAEQNGVTLSWETEATAVSVTENGDDKHSHTVHTNQGDWEVDHLIIAAGLGSFPLTQHLKKPLPLTPVLGQAMRVRLNNDNGLSSVVTGNDVHLIPLGKNEYWVGATVEFPEQPLVDPLDKVWEQACSYYPALAEAEILETWSGERPRPSQQAAPVIEYLEGYDNVILATGHYRNGVLLAPATATKVKELL
>NZ_CP042326.1|WP_146294507.1|527404_528436_+|Rieske-2Fe-2S-domain-containing-protein
MESVRELGINLNHWYVVARSNEVTTTPYSVTLWKQPIVLYRQENGEICALEDRCPHRFVKLSSGNVSGNTLECAYHGWRFNREGKCVAVPYLNEKQKLPPCQLRQYPVQEGDGFIWLFLGERDRAPKVPRFTVPEWDHLNYIATVSIIETQAHYSYLIENLMDMYHGHLHQDWQAWTDAKLDKIDETEEEVHGYYQAQSYYRINRIWSISQLFFPQLRQLHPEPLTVSYCYPHWFSTLGEDFKIYCLFSPVNETSTRAYLIHFTSLNAFWRLHKLPIWFRRGLKNALFGSAQKLLDGLVRQDVEMIEQEQQAFLENPHQRGYEFNPVLGSVQRLIRKQALSNS
>NZ_CP042326.1|WP_146294506.1|526133_527198_-|phosphate-acyltransferase-PlsX
MGSTRAKIAVDAMGGDHAPGEIINGAIRATEELDVDILLVGDPEQINPHLERFGSSTHAHLEVVPSEGVIEMTEEPMVGLKRKRKASINVAMDMVKTERAEAVVSAGHSGAGMAAALLRLGRLKGIERPAIGAIFPTQIPNKSVIILDVGAIVDCRAKHLEQFGLMGTVYSKYVLGNNDPKVGLLNIGEESSKGNEAAIRAYQLLEANAQIPFIGNAEGRDVLSGNFDVIVCDGFVGNVVLKFAEAVGEVLLDILKEELPQGLNGQLGTALLKPNLKRIKQRVDHAEHGGGLLLGVDGICIISHGSSQAPSVYNAIRLAKDAVDEQVITRLRSFMAGKMDIHSDSTVSSQPPQG
>NZ_CP042326.1|WP_146294505.1|525110_526121_-|beta-ketoacyl-ACP-synthase-III
MYSAGMAITGTGSAAPSVKLTNQNLSQMVETSDDWITTRTGIKERSVASPQESVVSLGTQAALNALEMAQVDPKEIDLVILATSTPDDLFGSAVSIQTAVGATQAVGFDLTAACSGFVFGLVNATQFIRTGVYRKVLLVGADLLSRWVDWSDRSTCILFGDGAGAVVIEATTPDHDGLLGFELCSDAQLSHTLNLAHQGEAKTLVDQTQVSQGSYRPIAMKGKEVYRFAVEKVPEVISKALFRAELTAKDVDWLLLHQANQRIMDAVAQRLNLPRDRVISNLAHYGNTSAASIPLALDEAMRAGKLHANDIIAMSGFGAGLTWGAAIVQWQINQKE
>NZ_CP042326.1|WP_146294504.1|524209_525094_-|ACP-S-malonyltransferase
MSKLAFVFPGQGSQAVGMETDLAESAIGQERFKQAEEILGWSVLDTCRQDEENLSRTLYTQPCLYVVESILTDILIDEGGYLPQYVAGHSLGEYSALYAARVFGFDAGLRLVQQRAKLMDQAGGGKMVALMKFDRAQLEETLAKTSDVVLANDNSSQQVVISGTPEAVDSVLSEVKAKRAVPLKVSGAFHSPLMEEVAQDFQKILDEVPFGEALIPVLSNVDPIPSTDPTELKSRLMQQMTGTVRWQETLIQLAEEGVSELVEVGPGNVLTGLCKRTCPSLELKNIDRAENCQI
>NZ_CP042326.1|WP_146294503.1|521063_524114_+|COG1615-family-transporter
MTVNQSPSSFSTPRQRKILRKSYFWLKLLIITVGLITTVDLVCRFLGEWFWFQEVDYLGVWLTRLLTQISLATSVFAVSALFLGLNLFLAEKLSGFESSNYGKSYAQKKPILGKMTLRPLLTLMGLICLLISFLLLHYLQISLSFLSSILEIPFLTNLYTASDVTESYDVSNLKPFFISSLKLQDIQNLLQQIWQAKWQIPILIGFCGFLMMKRRLGLKLFAGVISVFLGLVCALNWEQLLLFLNAISFEKTDPIFSKDVGFYVFSLPIWELLDFWVGGLFLYGLCAVSLIYLGSNNSISNGQFLGFSYPQLRHLYGLGGLVLLTLSLRHALARYELLYSERGVIYGASYADAQVQLPVETFLSITAAIAGIWLFAHALIHPNRFQISGRSPWVALIIYALGLLLGVGLTPLVQQFEVLPNELEKERPYLERSITMTRAGFALDRIEEEPFDPQGDLTLADIEANDQTIRNIRLWDTRPILQTNRQLQRIRLYYEFPDADIDRYTLLKGIGDLENPNQLTERQQVIISPRELNFSAIPQQGQTWVNRHLVYTHGYGFTLSPVNQVGEGGLPYYYIQDIGTGEEEEAGKLRTANPQIRDSIPIGNPRIYYGELTQDYVMTRTGQLELDFPRGDENAYNVYGGEGGINIGSWWRRGLFAEYLKDWQMLFTQNFTTETTLLMRRNIKERVSAIAPFLGFDRDPYLVTAHTEDSLAGTSESHLYWILDAYTMNDHYPYSDPGGYGFNYIRNSVKVIIDAYDGDIQFYIADDDPIIHAWDKVFPDLFHSLEEMPITLRSHIRYPVDLFKVQSERLLNYHMTDPQVFYNREDQWEIPREIYGTQAQAVEPYYLTMKLPDAEREEFILLLPFTPPDRNNMIAWLAARSDGEFYGRQLLYQFPKQRLIFGPEQIEALINQDPVISQQISLWNRQGSQTIQGNLLVIPIEESLLYVEPVYLEAARTSLPTLIRVIVVYENRIAMAETLQEAINVIFQPEKAEDVPAILRPLEDETTPVPEELELE
>NZ_CP042326.1|WP_146297248.1|535665_537168_+|CRISPR-associated-protein-Cas10
MRYTAVTFSPIQGFIEKSRKLRDLYGGSFILSYLSHTLCDYARSNNQEVISPATINVVQGTPNQIIIKGDFSYQEARTIFDRAWKTILQSCREWLENKLPSKDYQWQQQWQAWENHTWEFFWAQGSSIGEARHALNEKKRSRNWVGINWMGESSTLSGTDAIAHPTMGKFHPKQSNYSQEIAKIEDFYQQLSHVVSESIIDPSEQLSIPELIKRLITLKPIQSQLNLSAAELPKVEIPDSFRDLKRLEENRWTGWFQGDGDRIGEYLKGLNEQGNNEAQILKKFSRAMLNWGENALKPSVENGLGRVIYAGGDDFLGIFYQNYTSDAEKQAFLGECLQWFYRFNHEVWQQHQQNITVSVGFVWAAGGVPQRDVLQHCREAEQAAKKQGRDRLAIRILFNSGNYLQWTCPWWFLEEVITGYRDRAGGQNWTHIYNDIATLENRHAFENNQNIALGLFEIYFGSQTRQRLEQNLDSVILGDSSPDINQWIINLAKVGFHLCH
>NZ_CP042326.1|WP_146294513.1|537158_538154_+|CRISPR-associated-protein-Cmr3
MSLTFQYLITIEPLGFLYGSAGRFLSPENLVGRSGTSFPPSSATLSGLYAANQEDINALIVAGPFWSEIQNPQNFRVPLPHNYLVKDQQIQHQLQWNHQQWETENGTSPTGKFDKGGGWITIDQWHSPQQVESDPWEYLPHLHPRLKTEERKVEADSDQGSLFLENAVQLDPEACLVYLSNTHLDNGWYRFGGEGHFVNLRCLPLDAETQTLLHQPCGKQFALITPAVWGSNRYSYRFPILPNQQEVTPAWSIETLLTERPQAFRYRLGGDKQAKRLSRGRYAVPAGSVYVLSEPLEPWENWEESWFPKEAYSFKRWGCGLSLPLAIGGKS
>NZ_CP042326.1|WP_146294514.1|538153_538966_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYHQAYGIIKTLAPLHVGASAGEETGNLNLIFRDQFTQTGIIPRSSIRGRFRADLRSIQKGMEAEWYGHHAVEGREDGGTTEAIVKFEYASLLWLPVFCPGQPVIWISCPRLLKRYQQISGLSTEIPQPYTSSKSLQGRQVGQGQKVLFFNLGFMEIEQETDLSPWIPQGVDLPESNLVVVGDNDIATLHDMALYRQSRVRLQDEMKKTETGAFFNVEALPEESILVFPIALKEKGWSPFGDSDRKELYFGGLESIGFGRSQVILKGEYQ
>NZ_CP042326.1|WP_146294515.1|538965_539358_+|hypothetical-protein
MAWQTYGLDQEAQKLVLNAMKRDKDSLNQGYKMRMATAYGLERFWGEHLRLEGKEQAKSDYWKETWDTLVQIMRRGGIEIPNDAVNSNNPQSIQNMSEKLWGLDLEAQRVSLAVLTQLCDCLIWWTQRYK
>NZ_CP042326.1|WP_146294516.1|539368_539902_+|Uma2-family-endonuclease
MTFTPTLSLTEFLSQPNIESSPAWELINGRTIQKPMPTLFHSRLQRNLVNYINFHTEELEAIQELRCIVSPYSPVPDIAVIIASRLPEADGAFNGAPDWLIEILSPDQSTLTVQNKILHCLNNGTQLAWLIDLTRQQIWVWQGDNLPHIYAETDVLPSLGNLPPLTVNGVIAMTNRS
>NZ_CP042326.1|WP_146297249.1|539941_541051_+|hypothetical-protein
MPNVMVSPCGTSLLTNQVSNELRTLLLETANRQKADLTPDQQEKIAEHIQQRRNTLLDPSLHLETVKKMSAELNGIITYHNGDLSPSVPEYHFLLVSDTYQGEQVGEMVAAWLRNNGLIASIIKIPDLATSEAETFRNAMSELIKWCDDTLTSYQQQGYRVIFSLTGGFKGVNGFLQAIAMFYADESVYIFQASSQLLRIPKLPINIDKEGIVGKHLTLFRKLEVNFSVTRQEARGIPETLLFPVDENVTLSEWGELVWRQAKPTYYQQKLLPPLSSRLEYSNRFQSDVAAIGSERLEILNYRLDQLSRYLESNGDYNPLSLDFKKLKGKPHPQATHECDAWSDKDAKRLYGHFEATGTFVVDSLSSHL
>NZ_CP042326.1|WP_146294517.1|541066_542761_+|RAMP-superfamily-protein
MPKLNSNLAQKVPMMFRAQIGGRCQLQRIRQDVQEQDVQRWASEWVERTDFRPPEFGEGVRVQSYPINWRFVTNGGQDDGIVRPVIGARGYPYYPGSSMKGAFRRVCTPEQVQRYCGQDLNNGDFAPGILRFHGGYPVDNSWQQRLVDIIHPQQNWQVTGIQKSSAFAQISLYQPTLQFGISSTIPLEESEWETIWQLWKKALSGGIGCRVSAGYGQPQTKTDHLPYQPQLKGQGMAAKLLDGEGEFRPNMFKAALRGHALRLFGGLTTAQQAESLVQQLFGGVQGEGTVGLLAVTFQFSPDNLTLETFGQGSYAVPAYDVTGKLCFSLTQTLSEEERTALVKVVKALTRFAMVFGGFGKSWRRADHRLFYPEYYDQGSKPLIGCHWQWEGKNTLVNNTRNGVRNLDQVPAFIKKVRNDLQAWMRLRGVNPTKNYAQSWREAWHPDQVQVWGRIAEDQEDSRAIEWLHQPYRRAMREARIQEGSIYQSSVTGKMGNIGRIWHRMYPVVKLLKSKTDPNDIIAKKSAQYFELLTFFPSASPDDKEKEFRKFLESEQEMFNKLWGN
>NZ_CP042326.1|WP_146294518.1|543751_546334_-|TIGR03960-family-B12-binding-radical-SAM-protein
MTVAVEQLITPEINRPARYLGNEQGTKHKPWESATVRWVLTYPEIYEVGASNLGHVILYNILNAQPRQLCDRAYLPAPDLASKLRETNTPLFALENRCPVTEFDILGFSLSYELGATNILEMLDLANIPLTWQEREKGDYPLIFAGGQTATSNPEPYADFFDFIALGDGEELLPEVGLIIEEGKAEGLSKEELLLDLAQVPGVYVPRFYQMGEDGSVHPIRDDVPEKIIRRVAKPMPAYSIGLVPYVETVHDRLSVEIRRGCTRGCRFCQPGMLTRPAHDVEPEQVVETIEKGIRETGYNEFSLLSLSCSDYLSLPAVGMEIKNRLQDENISLSLPSQRVDRFDENIANIIGGNRKSGLTFAPEAGTQRMRDVVNKGLSNEELLRGVKTAFEQGWEKVKLYFMIGLPGETDADVIGIAETIRWLRQECRMKGRKRLDFNVTISNFTPKPHTPFQWHSVSTSEFIRKQELLRNEFRRMKGVKVNFTDVRISAMEDFVGRGDRRLVPVVRRAWELGAGMDAWWESLEKAYNAWEQAIADAGLDWKYRQVENGEWDWETMEKGTYQDRLDAPLPWDHIDTGIDKNWLKEDLQRALEAATVPDCSYAGCSHCGVCGIDFGHNIVVEPPEIPKFEGHFQPDQTRNQRIRLRFSKEGEMRLVSHLDLVRLFDRAVRRAKLPISFTGGYHPGPRISIANALSLGMTSSGEIVDFDLTEEMDLEVFRDQLAAQLPTGINVNSVEAVNLKDSATGLLEKAEYFVTVEASQPLTELAWKEALQAVLDHDEILWEKTTKSGKKKTLNLRDRAFEISFIETLDHHTAKLRYVGSCRNDGTLLNPEHFVYMLEQVTGLDLQLNHAHRQQLILQ
>NZ_CP042326.1|WP_146294519.1|547893_550038_+|iron-containing-alcohol-dehydrogenase
MPSSLEGYVLTDRAIDSLKRIVGRFSETEGNRAWTLTSVYGTGKSAFAHYLSALVAPANHPMRKKASAIAEVGLGTESDDYQLLEENLPQQGFLRAVATGTREPISQTIVRALINGAESFWKSKKGNKPDVYRELVDIQIEISEGRIFSNQEALNLVKKVRKVAKTGIFLVLDELGKNLEYAAYQGGTEDLYLLQQLIELPEQKETPIYVLGILHQAFAEYGQRLATVERNEWAKIQGRFEDIPFTESAGQMMRLIARAIDHSQTEPIACALNSYAQEWSTQMQNTIESEEFSQEIISGVYPLHPLSAFVLPILCRRYAQNDRSLFTFLTSAEPYSFKRFLDEVSVDSDILPTLKLDQVYDYFIEAAGMGLASRPNLQRWVEIQDLIADAKHLDRDYVRTLKTIGILNLVTVTGELRATRNLVPLALCDLPSGETENDTEYWDQIIEQLLQKNLITHRRQLNELRLWQGSDFNVDSELSAYLEKEQSNLVTLLSSLQPLNPLVAQRHSYKTGTLGYFECHYLDGSFDLTQLSCSNSDCDGLVGYWLDPEMPTEIPANTADGKPLIILGTKKLEVLRLRSREYAALKKIQSSAPELVTDGVARREVRYRVQEAEQLLNDTLNQAFNIADNPNLCWVQGEISPMDRVTDFNAKLSEVCDRAYPQTPILWNELINRRQLTSQGAKARRELLEAMIERSDEEKLGLKWEEQDKHLEKF
>NZ_CP042326.1|WP_146294520.1|550001_551402_+|hypothetical-protein
MGRAGQALREVLESYSITQSQLATALGVERPIFFRWYHEQTDPSAERVTEIVQAIQAINSEASREFVEIYLGNLTTSQPQELTKFNAEQLPQSDQVDVATLSRLFSDCTTSYKYLFFLSLLDILKRRQFEVLSSISFQELIVEMLANAWYPYTYFKLSFGTQDKIAQKLDSLNLEITEPILKFTDTDKKLLRSTIASQNLSDSISHLKRYVPFRLVASFLDAELKAENVSKGRGNDLEKVIPAIAEKHFDVKKPLYKFNNTDYRDCQSLFIHPNWASYLEKHYAIIRGWASWEWVKYMQKRNPNIPNIVNKIFMPQQRGSLSPQTKYWKQILDFQPINCIYSGQPLDSKKMSLDHYLPWSFVAHDQLWNLIPTDPSINSSKSNYLPSDKYFNDFVKLQHFGLKVSSQILSYQKWLNTVESYISELKMNDPDDLLDFEKLSKAYELTIQPLISLATIQGFSPDWLYD

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Crispr_ID: NZ_CP042326_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_4

543091-543352

TypeIII

Consensus_repeat	Method
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	PILER-CR
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	CRISPRCasFinder
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	CRT

3 spacers

csm6,cmr5gr11,cmr4gr7,cmr3gr5,cas10

The CRISPR arrays of NZ_CP042326_4

>merge|NZ_CP042326|4|543091-543352|PILER-CR,CRISPRCasFinder,CRT
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGACGTTACTCAGATTGAGGTGTTCCTAGGGCGAGAGGAACAGCTCTATTGTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGACAACGAGGCTTACAGCCGCCTCGGTTGTTCACTGAAGTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGACTTGTTAAGTCCCGTAACTATTGGGCTGCCCGCGTCAGGTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC

>NZ_CP042326|4|2|543091-543352|PILER-CR
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	GTTACTCAGATTGAGGTGTTCCTAGGGCGAGAGGAACAGCTCTATT
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	AACGAGGCTTACAGCCGCCTCGGTTGTTCACTGAA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	TTGTTAAGTCCCGTAACTATTGGGCTGCCCGCGTCAG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC

>NZ_CP042326|4|4|543091-543352|CRISPRCasFinder
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	GTTACTCAGATTGAGGTGTTCCTAGGGCGAGAGGAACAGCTCTATT
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	AACGAGGCTTACAGCCGCCTCGGTTGTTCACTGAA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	TTGTTAAGTCCCGTAACTATTGGGCTGCCCGCGTCAG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC

>NZ_CP042326|4|2|543091-543352|CRT
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	GTTACTCAGATTGAGGTGTTCCTAGGGCGAGAGGAACAGCTCTATT
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	AACGAGGCTTACAGCCGCCTCGGTTGTTCACTGAA
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC	TTGTTAAGTCCCGTAACTATTGGGCTGCCCGCGTCAG
GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146294519.1\|547893_550038_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341483
NZ_CP042326.1\|WP_146294517.1\|541066_542761_+\|RAMP-superfamily-protein	unknown	unknown	gnl\|CDD\|213662
NZ_CP042326.1\|WP_146294522.1\|552413_553982_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	unknown	unknown	gnl\|CDD\|235877
NZ_CP042326.1\|WP_146294513.1\|537158_538154_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP042326.1\|WP_146294518.1\|543751_546334_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_CP042326.1\|WP_146294512.1\|532416_534171_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|215160
NZ_CP042326.1\|WP_146297248.1\|535665_537168_+\|CRISPR-associated-protein-Cas10	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP042326.1\|WP_146294511.1\|531085_532396_+\|response-regulator	unknown	unknown	gnl\|CDD\|226229
NZ_CP042326.1\|WP_146297249.1\|539941_541051_+\|hypothetical-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NZ_CP042326.1\|WP_146294521.1\|551429_552038_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224029
NZ_CP042326.1\|WP_146294527.1\|558301_559327_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376917
NZ_CP042326.1\|WP_146294515.1\|538965_539358_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NZ_CP042326.1\|WP_146294516.1\|539368_539902_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP042326.1\|WP_146294523.1\|554025_554286_-\|DUF4164-family-protein	unknown	unknown	gnl\|CDD\|235580
NZ_CP042326.1\|WP_146294525.1\|554980_556951_+\|DNA-sulfur-modification-protein-DndD	unknown	unknown	gnl\|CDD\|274475
NZ_CP042326.1\|WP_146294510.1\|530031_530883_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|178633
NZ_CP042326.1\|WP_146294524.1\|554501_554783_-\|SelT/SelW/SelH-family-protein	unknown	unknown	gnl\|CDD\|226057
NZ_CP042326.1\|WP_146294526.1\|556960_558235_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|376917
NZ_CP042326.1\|WP_146294514.1\|538153_538966_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_CP042326.1\|WP_146294520.1\|550001_551402_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379160

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146294519.1\|547893_550038_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341483	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains proteins similar to iron-containing alcohol dehydrogenase (Fe-ADH), most of which have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.	0.00209496
NZ_CP042326.1\|WP_146294517.1\|541066_542761_+\|RAMP-superfamily-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	9.79122e-05
NZ_CP042326.1\|WP_146294522.1\|552413_553982_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	gnl\|CDD\|235877	PRK06850, PRK06850, hypothetical protein; Provisional.	0
NZ_CP042326.1\|WP_146294513.1\|537158_538154_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.63031e-07
NZ_CP042326.1\|WP_146294518.1\|543751_546334_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP042326.1\|WP_146294512.1\|532416_534171_-\|arginine--tRNA-ligase	gnl\|CDD\|215160	PLN02286, PLN02286, arginine-tRNA ligase.	0
NZ_CP042326.1\|WP_146297248.1\|535665_537168_+\|CRISPR-associated-protein-Cas10	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.43596e-30
NZ_CP042326.1\|WP_146294511.1\|531085_532396_+\|response-regulator	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	0.00017966
NZ_CP042326.1\|WP_146297249.1\|539941_541051_+\|hypothetical-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.65338e-41
NZ_CP042326.1\|WP_146294521.1\|551429_552038_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	2.66634e-77
NZ_CP042326.1\|WP_146294527.1\|558301_559327_-\|hypothetical-protein	gnl\|CDD\|376917	pfam02743, dCache_1, Cache domain. Double cache domain 1 covers the last three strands from the membrane distal PAS-like domain, the first two strands of the membrane proximal domain, and the connecting elements between the two domains.	1.10221e-09
NZ_CP042326.1\|WP_146294520.1\|550001_551402_+\|hypothetical-protein	gnl\|CDD\|379160	pfam13395, HNH_4, HNH endonuclease. This HNH nuclease domain is found in CRISPR-related proteins.	1.11515e-08
NZ_CP042326.1\|WP_146294516.1\|539368_539902_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	5.36553e-24
NZ_CP042326.1\|WP_146294523.1\|554025_554286_-\|DUF4164-family-protein	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0.000222279
NZ_CP042326.1\|WP_146294510.1\|530031_530883_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|178633	PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.	1.98428e-40
NZ_CP042326.1\|WP_146294524.1\|554501_554783_-\|SelT/SelW/SelH-family-protein	gnl\|CDD\|226057	COG3526, COG3526, Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones].	1.06683e-38
NZ_CP042326.1\|WP_146294526.1\|556960_558235_-\|HAMP-domain-containing-protein	gnl\|CDD\|376917	pfam02743, dCache_1, Cache domain. Double cache domain 1 covers the last three strands from the membrane distal PAS-like domain, the first two strands of the membrane proximal domain, and the connecting elements between the two domains.	3.67952e-18
NZ_CP042326.1\|WP_146294514.1\|538153_538966_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.46147e-21
NZ_CP042326.1\|WP_146294525.1\|554980_556951_+\|DNA-sulfur-modification-protein-DndD	gnl\|CDD\|274475	TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. [DNA metabolism, Restriction/modification].	0

>NZ_CP042326.1|WP_146294517.1|541066_542761_+|RAMP-superfamily-protein
MPKLNSNLAQKVPMMFRAQIGGRCQLQRIRQDVQEQDVQRWASEWVERTDFRPPEFGEGVRVQSYPINWRFVTNGGQDDGIVRPVIGARGYPYYPGSSMKGAFRRVCTPEQVQRYCGQDLNNGDFAPGILRFHGGYPVDNSWQQRLVDIIHPQQNWQVTGIQKSSAFAQISLYQPTLQFGISSTIPLEESEWETIWQLWKKALSGGIGCRVSAGYGQPQTKTDHLPYQPQLKGQGMAAKLLDGEGEFRPNMFKAALRGHALRLFGGLTTAQQAESLVQQLFGGVQGEGTVGLLAVTFQFSPDNLTLETFGQGSYAVPAYDVTGKLCFSLTQTLSEEERTALVKVVKALTRFAMVFGGFGKSWRRADHRLFYPEYYDQGSKPLIGCHWQWEGKNTLVNNTRNGVRNLDQVPAFIKKVRNDLQAWMRLRGVNPTKNYAQSWREAWHPDQVQVWGRIAEDQEDSRAIEWLHQPYRRAMREARIQEGSIYQSSVTGKMGNIGRIWHRMYPVVKLLKSKTDPNDIIAKKSAQYFELLTFFPSASPDDKEKEFRKFLESEQEMFNKLWGN
>NZ_CP042326.1|WP_146297249.1|539941_541051_+|hypothetical-protein
MPNVMVSPCGTSLLTNQVSNELRTLLLETANRQKADLTPDQQEKIAEHIQQRRNTLLDPSLHLETVKKMSAELNGIITYHNGDLSPSVPEYHFLLVSDTYQGEQVGEMVAAWLRNNGLIASIIKIPDLATSEAETFRNAMSELIKWCDDTLTSYQQQGYRVIFSLTGGFKGVNGFLQAIAMFYADESVYIFQASSQLLRIPKLPINIDKEGIVGKHLTLFRKLEVNFSVTRQEARGIPETLLFPVDENVTLSEWGELVWRQAKPTYYQQKLLPPLSSRLEYSNRFQSDVAAIGSERLEILNYRLDQLSRYLESNGDYNPLSLDFKKLKGKPHPQATHECDAWSDKDAKRLYGHFEATGTFVVDSLSSHL
>NZ_CP042326.1|WP_146294516.1|539368_539902_+|Uma2-family-endonuclease
MTFTPTLSLTEFLSQPNIESSPAWELINGRTIQKPMPTLFHSRLQRNLVNYINFHTEELEAIQELRCIVSPYSPVPDIAVIIASRLPEADGAFNGAPDWLIEILSPDQSTLTVQNKILHCLNNGTQLAWLIDLTRQQIWVWQGDNLPHIYAETDVLPSLGNLPPLTVNGVIAMTNRS
>NZ_CP042326.1|WP_146294515.1|538965_539358_+|hypothetical-protein
MAWQTYGLDQEAQKLVLNAMKRDKDSLNQGYKMRMATAYGLERFWGEHLRLEGKEQAKSDYWKETWDTLVQIMRRGGIEIPNDAVNSNNPQSIQNMSEKLWGLDLEAQRVSLAVLTQLCDCLIWWTQRYK
>NZ_CP042326.1|WP_146294514.1|538153_538966_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYHQAYGIIKTLAPLHVGASAGEETGNLNLIFRDQFTQTGIIPRSSIRGRFRADLRSIQKGMEAEWYGHHAVEGREDGGTTEAIVKFEYASLLWLPVFCPGQPVIWISCPRLLKRYQQISGLSTEIPQPYTSSKSLQGRQVGQGQKVLFFNLGFMEIEQETDLSPWIPQGVDLPESNLVVVGDNDIATLHDMALYRQSRVRLQDEMKKTETGAFFNVEALPEESILVFPIALKEKGWSPFGDSDRKELYFGGLESIGFGRSQVILKGEYQ
>NZ_CP042326.1|WP_146294513.1|537158_538154_+|CRISPR-associated-protein-Cmr3
MSLTFQYLITIEPLGFLYGSAGRFLSPENLVGRSGTSFPPSSATLSGLYAANQEDINALIVAGPFWSEIQNPQNFRVPLPHNYLVKDQQIQHQLQWNHQQWETENGTSPTGKFDKGGGWITIDQWHSPQQVESDPWEYLPHLHPRLKTEERKVEADSDQGSLFLENAVQLDPEACLVYLSNTHLDNGWYRFGGEGHFVNLRCLPLDAETQTLLHQPCGKQFALITPAVWGSNRYSYRFPILPNQQEVTPAWSIETLLTERPQAFRYRLGGDKQAKRLSRGRYAVPAGSVYVLSEPLEPWENWEESWFPKEAYSFKRWGCGLSLPLAIGGKS
>NZ_CP042326.1|WP_146297248.1|535665_537168_+|CRISPR-associated-protein-Cas10
MRYTAVTFSPIQGFIEKSRKLRDLYGGSFILSYLSHTLCDYARSNNQEVISPATINVVQGTPNQIIIKGDFSYQEARTIFDRAWKTILQSCREWLENKLPSKDYQWQQQWQAWENHTWEFFWAQGSSIGEARHALNEKKRSRNWVGINWMGESSTLSGTDAIAHPTMGKFHPKQSNYSQEIAKIEDFYQQLSHVVSESIIDPSEQLSIPELIKRLITLKPIQSQLNLSAAELPKVEIPDSFRDLKRLEENRWTGWFQGDGDRIGEYLKGLNEQGNNEAQILKKFSRAMLNWGENALKPSVENGLGRVIYAGGDDFLGIFYQNYTSDAEKQAFLGECLQWFYRFNHEVWQQHQQNITVSVGFVWAAGGVPQRDVLQHCREAEQAAKKQGRDRLAIRILFNSGNYLQWTCPWWFLEEVITGYRDRAGGQNWTHIYNDIATLENRHAFENNQNIALGLFEIYFGSQTRQRLEQNLDSVILGDSSPDINQWIINLAKVGFHLCH
>NZ_CP042326.1|WP_146294512.1|532416_534171_-|arginine--tRNA-ligase
MYSLLEQLRQHFSQALVNAFGEEYADTDPLVTLAAKPEFGDYQSNIALSLAKPLKQKPRDTAQQIIDHLDLSELCEPPEIAGPGFINLRLKPSYLESQLKTISQDSQLGAEKAETPQNVIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREAYPEALTKADALAIGDLVTLYKEAKKRFDEDETFQKTAREEVVKLQKGAPDSVQAWELLCEQSRREFQVIYDLLGVELTERGESFYNPFLSEVVQELEAKGLVEEDQGAKCVFLEGYTNKSGERLPLIIQKSDGGYNYATTDLAAIRYRIREDGAQRVIYVTDAGQASHFDQVFQVAKRAGWVSDDVELVHVPFGLVQGEDGKKLKTRSGDTIRLRDLLDEAIARSRQDLEQRFQEEGRNESEEFIAKTAKIVGISAVKYADLSRNRTSNYVFSFDKMLALQGNTAPYLLYAYVRVQGISRKGNIDWETLNKQNITLEDNSELVLAKHILQLSDILKEVEKDLLPNRLCQYLFELSQKFNQFYDRCPILQAEADKRASRLMLADLTARTLKLGLSLLGIEVLERM
>NZ_CP042326.1|WP_146294511.1|531085_532396_+|response-regulator
MTSVLEQRLTCNRIFRHLFFYHSQQFTGKVEISGFQNQKWCFYFMLGSLIWAYGGSHPLRRWRRQFYAATGQLPQMSRINQNGECWDCTELRRLSQNRHLSSEQIQNIIKGVLLEVLFDAVQAFELPIYEHYYFKEQTKVLTITELTGIGDGIQVKCQEDIHPDPYYRLPRSLLPTLKELQETTYQTWKQWVKAGLATCSPNEAPLLVNPQALKPIVSDKVYRNLSKALQGRTTLRDLAFKFKHNGNFLKSGCALAPYVLKGLVQFEKIQDIAVSKISKDSYSTITFLDSVTDSNLLLAIDSNADNHNLLSAIALEQGYEFQVFSDSLKAILELQDNQHFQPKFIFFNPDNSIIKETEFCKILKRLGISDQVPIVIYTNEEIQNKEVKEIFSLGANEVIDSKLFTYYHLSSLLVKYRNSQQEKVLDKQTIVQNTVS
>NZ_CP042326.1|WP_146294510.1|530031_530883_-|alpha/beta-fold-hydrolase
MTNLEEKTIEIDQQQWFYRQASPKNESEAPPVVLLHGLLAHSYSWRILLEDIAEMGLMGYAPDWLGEGSSAKPSRREFPYTPEAYLAALEKLFHSLELSRFHLVVQGFVGSIGLQYAFRHPEQIERLVILNTPLSSSVRLPWLMRQWAFPLMGEMLTQDPLLVDRTLEKGSGYVISDKNLNIYREPFLKNSQAGRSLVATIKNLNLSQAMAEIEAGWKEWDKPTQIIWGMGDPWLSADVPKALADEYNHIRFVKLEEGKHYPQEHCSDEISPILLTFLRQQTA
>NZ_CP042326.1|WP_146294518.1|543751_546334_-|TIGR03960-family-B12-binding-radical-SAM-protein
MTVAVEQLITPEINRPARYLGNEQGTKHKPWESATVRWVLTYPEIYEVGASNLGHVILYNILNAQPRQLCDRAYLPAPDLASKLRETNTPLFALENRCPVTEFDILGFSLSYELGATNILEMLDLANIPLTWQEREKGDYPLIFAGGQTATSNPEPYADFFDFIALGDGEELLPEVGLIIEEGKAEGLSKEELLLDLAQVPGVYVPRFYQMGEDGSVHPIRDDVPEKIIRRVAKPMPAYSIGLVPYVETVHDRLSVEIRRGCTRGCRFCQPGMLTRPAHDVEPEQVVETIEKGIRETGYNEFSLLSLSCSDYLSLPAVGMEIKNRLQDENISLSLPSQRVDRFDENIANIIGGNRKSGLTFAPEAGTQRMRDVVNKGLSNEELLRGVKTAFEQGWEKVKLYFMIGLPGETDADVIGIAETIRWLRQECRMKGRKRLDFNVTISNFTPKPHTPFQWHSVSTSEFIRKQELLRNEFRRMKGVKVNFTDVRISAMEDFVGRGDRRLVPVVRRAWELGAGMDAWWESLEKAYNAWEQAIADAGLDWKYRQVENGEWDWETMEKGTYQDRLDAPLPWDHIDTGIDKNWLKEDLQRALEAATVPDCSYAGCSHCGVCGIDFGHNIVVEPPEIPKFEGHFQPDQTRNQRIRLRFSKEGEMRLVSHLDLVRLFDRAVRRAKLPISFTGGYHPGPRISIANALSLGMTSSGEIVDFDLTEEMDLEVFRDQLAAQLPTGINVNSVEAVNLKDSATGLLEKAEYFVTVEASQPLTELAWKEALQAVLDHDEILWEKTTKSGKKKTLNLRDRAFEISFIETLDHHTAKLRYVGSCRNDGTLLNPEHFVYMLEQVTGLDLQLNHAHRQQLILQ
>NZ_CP042326.1|WP_146294519.1|547893_550038_+|iron-containing-alcohol-dehydrogenase
MPSSLEGYVLTDRAIDSLKRIVGRFSETEGNRAWTLTSVYGTGKSAFAHYLSALVAPANHPMRKKASAIAEVGLGTESDDYQLLEENLPQQGFLRAVATGTREPISQTIVRALINGAESFWKSKKGNKPDVYRELVDIQIEISEGRIFSNQEALNLVKKVRKVAKTGIFLVLDELGKNLEYAAYQGGTEDLYLLQQLIELPEQKETPIYVLGILHQAFAEYGQRLATVERNEWAKIQGRFEDIPFTESAGQMMRLIARAIDHSQTEPIACALNSYAQEWSTQMQNTIESEEFSQEIISGVYPLHPLSAFVLPILCRRYAQNDRSLFTFLTSAEPYSFKRFLDEVSVDSDILPTLKLDQVYDYFIEAAGMGLASRPNLQRWVEIQDLIADAKHLDRDYVRTLKTIGILNLVTVTGELRATRNLVPLALCDLPSGETENDTEYWDQIIEQLLQKNLITHRRQLNELRLWQGSDFNVDSELSAYLEKEQSNLVTLLSSLQPLNPLVAQRHSYKTGTLGYFECHYLDGSFDLTQLSCSNSDCDGLVGYWLDPEMPTEIPANTADGKPLIILGTKKLEVLRLRSREYAALKKIQSSAPELVTDGVARREVRYRVQEAEQLLNDTLNQAFNIADNPNLCWVQGEISPMDRVTDFNAKLSEVCDRAYPQTPILWNELINRRQLTSQGAKARRELLEAMIERSDEEKLGLKWEEQDKHLEKF
>NZ_CP042326.1|WP_146294520.1|550001_551402_+|hypothetical-protein
MGRAGQALREVLESYSITQSQLATALGVERPIFFRWYHEQTDPSAERVTEIVQAIQAINSEASREFVEIYLGNLTTSQPQELTKFNAEQLPQSDQVDVATLSRLFSDCTTSYKYLFFLSLLDILKRRQFEVLSSISFQELIVEMLANAWYPYTYFKLSFGTQDKIAQKLDSLNLEITEPILKFTDTDKKLLRSTIASQNLSDSISHLKRYVPFRLVASFLDAELKAENVSKGRGNDLEKVIPAIAEKHFDVKKPLYKFNNTDYRDCQSLFIHPNWASYLEKHYAIIRGWASWEWVKYMQKRNPNIPNIVNKIFMPQQRGSLSPQTKYWKQILDFQPINCIYSGQPLDSKKMSLDHYLPWSFVAHDQLWNLIPTDPSINSSKSNYLPSDKYFNDFVKLQHFGLKVSSQILSYQKWLNTVESYISELKMNDPDDLLDFEKLSKAYELTIQPLISLATIQGFSPDWLYD
>NZ_CP042326.1|WP_146294521.1|551429_552038_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MGKTLIDFKQWEITYLTISGHKFYAPKGIGALVIKKGTPLEPIIYGGGHERGMRSGTLNVPGIVGLGEACRLREMEMKEDESAIAQKRDRLQALLQKEIPDLVVNGDTNSRLAGNLHISLPRIPNSAIVARIRDQLAISTGAACSSGVETPSHVLRAMNLPEEAIEGALRIGIGKFTMEEEVDQAAMILSEAAFKIRSLMDS
>NZ_CP042326.1|WP_146294522.1|552413_553982_+|DNA-phosphorothioation-system-sulfurtransferase-DndC
MSNQQLDFLNKQRSVSELVEDVNELTKQIQELYYRDNKPIIVGWSGGKDSTTVLQLFWNAIADLPVEKRTKTIHVISNDTLVENPIVSNWVRKYHKKMQEAAEQQQMPIQTHLTYPSVQDRFWVCLIGKGYPAPRNRFRWCTDRMKIQPTDSFIRKLIRDQGEVVLVLGTRKAESRTRERNMKKHRKWRVEDHLNANPSRPNSLIYLPIEDWQTNEVWLYLMQWENPWGGNNKDLLSMYQGATADNECPLVVDTSTPSCGDSRFGCWVCTMVSKDKSMEAMIQNDEEKEWMQPLLDIRNELDVENDHDRRDFRRIYGKVELFERNTGDGETAINPIPGPYTKYWREYWLRRVLEAQVEVRKNAPEGMEDITLIQPEELSEIRRIWLEEKHEFDDSLPRIYQEVTGEPFFDNRLGATNQVLGSDEWSVLEELCENEMDLELMAKLLDTERQYHTKSRRVGIYESLEKCFETSSRNKEEAIENAHLKRDLKTAVNDQDAEKVKQLTWANIKFAGNKEADNSEQD
>NZ_CP042326.1|WP_146294523.1|554025_554286_-|DUF4164-family-protein
MTTETDFAKILERLETKIDSLDEKIDTKTDSLGEKIQSLDSRLARVEENTSNLFQQFNKQHNRGFLIVLFTTILGLLGKVKLFPSQ
>NZ_CP042326.1|WP_146294524.1|554501_554783_-|SelT/SelW/SelH-family-protein
MSNRVEIHYCTQCRWLLRAAWMAQELLTTFTQDITELSLCPAEGGVFQVIANSKVVWCRKDAGRFPEITELKQLIRDEIAPEKQLGHADKKKT
>NZ_CP042326.1|WP_146294525.1|554980_556951_+|DNA-sulfur-modification-protein-DndD
MILRELVLENFGPYRGRQVIDLSPDAGEQVRPIILFGGMNGGGKTTFMDAIRLAFYGQRAQCSTRGSLSYSDFLSQAVNRHSEGKTRIELAFEEILNNQLVVFRVTRTWQKGDNKDTLSILVDDWPDRALTNTWDEYIENLLPLGISNLFLFDGEQVKELAELDVPPPQVKEAIQSLLGLELAEKLGEDLEVLVNRKRKQLANKSTLSNIEAIETKLNQQKADLNTAKEQQEQLQRKLDRAHEDHRLALENFISEGGKIASQRSQLQRKINDLKENAETEKEALRELAADMLPLALITPLLNAAKEQGEQELEYQQALMTHEVVKKRDRALLDYINQLAISATEVDKISAFLQEENQTLEAKLHPKIPPYLRSDQDTLNFLNTVLDYRLPNLLKELKTKQEKLEEIKIEIDNSDREIANAASPEIYQKLETAVKEAQNKKAEAQANYESGQRYLQELEEKIKETKQELERYSQEAIDQNNNEHIIQSAAKVQKTLEQFKEKLTLKKLNKLEIEVTECFRYLLHKSDLVHRVSIDTHNFRLSLFDTQGKPIPKHRLSAGEKQLLAIAFLWGLARVSHRQLPIAIDTPLGRLDSSHRHNLVERYFPSASHQVILLSTDTEIGEVEYQQLKSQDAIAHQYQLTYEEDTGETIVQSGYFF
>NZ_CP042326.1|WP_146294526.1|556960_558235_-|HAMP-domain-containing-protein
MKLLRKSLLFQLAGSFYILSLITLSVVAVTAYNRARAHLKNSVFERLDVAVSLKDHELEQWFDNQRRDAILLANLPETKEGIEAVTSNSEGDESEVLNDLFQEVVTLKPDIDEVSILTTGGIVLLSSDPSREGRYLGLGNTTTYFEPDETNVIPTIYQSSHAEKPRVTLATPILDSDNQRQGALATSLNLDAVDQLIRERTGLGETGETYLVNRGTGENRFISGVDSSNDLSRDTTSSQGINKALNGESGRGMYENYEGVPVIGIYQWVDHSGVALIAEISQEEAFRPARTLAREIIYIGFGVATLMLILIVLLARQLAKPILAMTTTATKIENGEFDLNALEGIKFRLDELGDLARVFENMANKIHAREHQLKQEITELRIEIDQQKKEEEVKEIVETDFFQDLENKAQSLRKRKHSKNSPNS
>NZ_CP042326.1|WP_146294527.1|558301_559327_-|hypothetical-protein
MSSYQKLNSSWSNRIGMLIDWLPLIAITAFSLSAFLVYVSMRSQIVPAVFNELNTIAEIKEEQLESWFNQQQNTVLEASEVLGESPQIVEILESGGINPEEVPTIEALLEEVDLLENSYSVSLLNQSSIIVYSTKGSIEGSYQPIQNTSTYLTPENRDQVVPNFYASRRDAMPMITFATPLHNEEDQRVGFLAVDLDLDALNQEMRELPYTLELPSEEAPSLEVYLVGRISPEKNELVAHSVESHTLGDGISSPGIDEAILHRNSNQELYLNYNRNPVIGDYRWISEYNLALLSELKQYQIFAPARRLAAWIYGLGFSITALLSMILFLFKPKVKAKTNKL

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Crispr_ID: NZ_CP042326_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_5

708154-708332

TypeV-U5

Consensus_repeat	Method
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAACC	PILER-CR
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAAC	CRISPRCasFinder

2 spacers

c2c5_V-U5

The CRISPR arrays of NZ_CP042326_5

>merge|NZ_CP042326|5|708154-708332|PILER-CR,CRISPRCasFinder
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAACCCCAATCTTTATTTCCATTTTTAATGAAATGCACTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAACTAAGAGGATAATCCGTAAGATAGTATAGGTTTTCCTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAACC

>NZ_CP042326|5|3|708154-708332|PILER-CR
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAACC	CCAATCTTTATTTCCATTTTTAATGAAATGCA
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAACT	AAGAGGATAATCCGTAAGATAGTATAGGTTTTC
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAACC

>NZ_CP042326|5|5|708154-708331|CRISPRCasFinder
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAAC	CCCAATCTTTATTTCCATTTTTAATGAAATGCA
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAAC	TAAGAGGATAATCCGTAAGATAGTATAGGTTTTC
CTTTCAATCAATCTTAAGGGCAAAACCTTATTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146294657.1\|717847_718078_+\|TIGR02450-family-Trp-rich-protein	unknown	unknown	gnl\|CDD\|370527
NZ_CP042326.1\|WP_146294655.1\|713920_714223_-\|transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP042326.1\|WP_146294646.1\|702014_702560_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612
NZ_CP042326.1\|WP_146294647.1\|702612_703878_-\|proton-extrusion-protein-PcxA	unknown	unknown	gnl\|CDD\|235046
NZ_CP042326.1\|WP_146294656.1\|715086_717366_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP042326.1\|WP_146294658.1\|718098_718584_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|213521
NZ_CP042326.1\|WP_146294650.1\|710776_711214_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP042326.1\|WP_146294644.1\|701191_701434_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294652.1\|711920_712700_+\|DUF1828-domain-containing-protein	unknown	unknown	gnl\|CDD\|378071
NZ_CP042326.1\|WP_146294651.1\|711428_711911_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294641.1\|695945_697346_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340871
NZ_CP042326.1\|WP_146294649.1\|708843_710709_-\|hypothetical-protein	c2c5_V-U5	-	gnl\|CDD\|273793
NZ_CP042326.1\|WP_146294643.1\|699083_701069_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NZ_CP042326.1\|WP_146294648.1\|704124_706188_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294642.1\|697657_698992_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340891
NZ_CP042326.1\|WP_146294645.1\|701467_701983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294654.1\|713040_713415_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146294653.1\|712696_713026_-\|DUF45-domain-containing-protein	unknown	unknown	gnl\|CDD\|320703
NZ_CP042326.1\|WP_146297262.1\|706332_707340_+\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP042326.1\|WP_146294640.1\|694778_695861_+\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146294646.1\|702014_702560_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	1.34324e-77
NZ_CP042326.1\|WP_146294647.1\|702612_703878_-\|proton-extrusion-protein-PcxA	gnl\|CDD\|235046	PRK02507, PRK02507, proton extrusion protein PcxA; Provisional.	0
NZ_CP042326.1\|WP_146294656.1\|715086_717366_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP042326.1\|WP_146294650.1\|710776_711214_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	7.20858e-16
NZ_CP042326.1\|WP_146294655.1\|713920_714223_-\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.21075e-10
NZ_CP042326.1\|WP_146294658.1\|718098_718584_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|213521	TIGR00281, Segregation_and_condensation_protein_B, segregation and condensation protein B. Shown to be required for chromosome segregation and condensation in B. subtilis. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	7.67914e-46
NZ_CP042326.1\|WP_146294641.1\|695945_697346_-\|MFS-transporter	gnl\|CDD\|340871	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters. This group includes the solute carrier 45 (SLC45) family as well as plant sucrose transporters (SUCs or SUTs) and similar proteins such as Schizosaccharomyces pombe general alpha-glucoside permease. the SLC45 family is composed of four (A1-A4) vertebrate proteins as well as related insect proteins such as Drosophila sucrose transporter SCRT or Slc45-1. Members of this group transport sucrose and other sugars like maltose into the cell, with the concomitant uptake of protons (symport system). Plant sucrose transporters are crucial to carbon partitioning, playing a key role in phloem loading/unloading. They play a key role in loading and unloading of sucrose into the phloem and as a result, they control sucrose distribution throughout the whole plant and drive the osmotic flow system in the phloem. They also play a role in the exchange of sucrose between beneficial symbionts (mycorrhiza and Rhizobium) as well as pathogens such as nematodes and parasitic fungi. There are nine sucrose transporter genes in Arabidopsis and five in rice. Vertebrate SLC45 family proteins have been implicated in the regulation of glucose homoeostasis in the brain (SLC45A1), with skin and hair pigmentation (SLC45A2), and with prostate cancer and myelination (SLC45A3). Mutations in SLC45A2, also called MATP (membrane-associated transporter protein) or melanoma antigen AIM1, cause oculocutaneous albinism type 4 (OCA4), an autosomal recessive disorder of melanin biosynthesis that results in congenital hypopigmentation of ocular and cutaneous tissues. The SLC45 family and related sugar transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.89556e-86
NZ_CP042326.1\|WP_146294649.1\|708843_710709_-\|hypothetical-protein	gnl\|CDD\|273793	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam01385, and other proteins. [Mobile and extrachromosomal element functions, Transposon functions].	0.000176109
NZ_CP042326.1\|WP_146294643.1\|699083_701069_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	1.98242e-45
NZ_CP042326.1\|WP_146294657.1\|717847_718078_+\|TIGR02450-family-Trp-rich-protein	gnl\|CDD\|370527	pfam09493, DUF2389, Tryptophan-rich protein (DUF2389). Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.	1.41505e-24
NZ_CP042326.1\|WP_146294642.1\|697657_698992_+\|MFS-transporter	gnl\|CDD\|340891	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins. This family is composed of bacterial L-fucose permease (FucP), eukaryotic Major facilitator superfamily domain-containing protein 4 (MFSD4) proteins, and similar proteins. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. The MFSD4 subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as Sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The FucP/MFSD4 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.2247e-52
NZ_CP042326.1\|WP_146294652.1\|711920_712700_+\|DUF1828-domain-containing-protein	gnl\|CDD\|378071	pfam08861, DUF1828, Domain of unknown function DUF1828. This presumed domain is functionally uncharacterized.	1.17435e-24
NZ_CP042326.1\|WP_146294653.1\|712696_713026_-\|DUF45-domain-containing-protein	gnl\|CDD\|320703	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin. M48 YhfN-like protease is considered as a CaaX prenyl protease 1 homolog, with most of the sequences in this family as yet uncharacterized. It contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is probably associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. This novel family of related proteins consist of the soluble minimal scaffold similar to the catalytic domains of the integral-membrane metallopeptidase M48 and M56, thus called minigluzincins.	2.7986e-29
NZ_CP042326.1\|WP_146297262.1\|706332_707340_+\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.00084e-72
NZ_CP042326.1\|WP_146294640.1\|694778_695861_+\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0

>NZ_CP042326.1|WP_146297262.1|706332_707340_+|DUF21-domain-containing-protein
MFVISGFFSGSETAITAFDNLKLRGLIKEKGDPRGTFRLVLENRTRFIITLLLGNNLVNNFAAVLTSNLFAIWLGNAGLGIATAVVTIIVLIFAEITPKSLAINNVMAIFKLVVGPIYLLSRLLSCFGIIYLFENIAQWTVKLFQKLLSNNDQQGESLTDLQLMIELLGGKGKLDLYKHQLLHKALMLDQLSAKDVVKPRIAMRTISHQATLQELVEFCLETGYSRVPVQGESKDEIVGIMNLKQALQYLHNLPQDASQQVLVTEVMTPPTYIPETKQVASTLKEMLQQRLHIVIVVDEYGGTVGLLTLEDILEELVGEIYDESDLPRSRQQRRI
>NZ_CP042326.1|WP_146294648.1|704124_706188_+|hypothetical-protein
MAVKHASWIVGDARSGKTTYLVENFQQWVQQKQNAIEDQSQAQWMPSVIVLAANHNTAEQLSQKLTHAGYPIATKTPLGFMEEEVNLFFPLCCEILSLTPKFPLKLRPETEQTLASSFWHSAWPEAIIPNGKVESRLVRTTLDILQLAGASGTPLEEIATRLSVTLSEEEKALIGDEALIPLMAELIVNWRDWCLKQGFLTYGLIYYLYGQVLLTHPFYQAYLQDYYQGIFADDVDDYPAIAQHLASLFLQNHAKAAFTFNPNGKIRLGLGADPDAWEKLASDCEIIRLTPSPSLDSPPQAIAPILEMIANPQIVKPLPPCIHQIETSSRSQLLRETAKTIIKLIEEENISPTDIAIIAPGLDEIARYTLIKILSDHSQPVNPLREQRPLIASSLVRALLSVTCLIYPNLGRFLTNHDVAEMLIILTEHSSHPIDPVRAGLIADYCYQADPNAPQLLEIQNFPRWDRIGYKAETAYNQLRHWIEEKKAQENPMSVTGLLNEAITKFLWKGNNISVANLANLKALTETTQHYWEVEERIAQQESKFSTESDLMANFIQLLKQGTITANPDPNSSLESDFPQGVTIANIFQYRSHRISHGYQFWLDIGSSLWEQPGVANLFASSAFIQQNPYTDSTSEDNAHLQRIINDLLGRATKNVYLCHSDLAVNGTEQNGILLSLLSAPNTIKSH
>NZ_CP042326.1|WP_146294647.1|702612_703878_-|proton-extrusion-protein-PcxA
MYLPRKIRQFVPWFSESPEESLEKAYQAALMIKLIEDEYFEQQPIQQKNSSYSDEVFSYFEQEVNRNLRIVGDNLKKFKESRSFLRWAAQDYPRNQYFKNTDLIIEKLNVAEDIISTYEKLESGKNIKQPPKEQQQKLSNIANQERSSKPRTISDQTSVLPRSLLRTLNRIKREVEKSSDAEEEVIRNFRSSRDKTAISIRFLLILIIVPLLTHQITKNFIIAPIAEHYFVQEDQQVLFINRDFREEALQELQHFEETLRFEEILGMQPEMSEAEMEEKVREKAREIAEYYRYRSLNAIENIIADICSVIAFTIIIYRSREEIAVLKSFIDEFVYGLSDSAKAFIIILSTDIFVGYHSPHGWEVILEQISRHFGLPENREFNFIFIATFPVILDTIFKYWIFRYLNRISPSAVATYRNMNE
>NZ_CP042326.1|WP_146294646.1|702014_702560_-|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MAVAKNQVTLVLGPANSGKSEWAEKLAKQSNHPVTYVATAIADPNDPGWQKKLQKHASRRPTSWQTQEIPTALAEFIAQGTAQDCLLIDSLGTWVANLLVETEAEWEVTLTHFLDTLQQTSSQVILVGEETGWGVIPAYKSGRVFRDRLGNLTRQIGENAAEVYLITGGYALPLKAIGYPL
>NZ_CP042326.1|WP_146294645.1|701467_701983_-|hypothetical-protein
MASQQQVKNYLAYWFLAGKKVYIKNGRETRQPTSVLQQEKFSSEFESCWEEILSAATGQCYLQGTEQTVEELLTSDWELNSCARCQMPIPLKHSGAKTGPCPCIDLENWPNDELPKPHLPIDNQKHLSQLSSRLKEEEANLDEIRANLETTNQKSPNFPKPQKSEKEQPRN
>NZ_CP042326.1|WP_146294644.1|701191_701434_+|hypothetical-protein
MMKLLNQRQIKNILGLVLLATPLTLSATAMSAEAASSSSLRDRAVETNTHTKAEEGSDKYAYHRRGCGHRSRRRPPKKWW
>NZ_CP042326.1|WP_146294643.1|699083_701069_-|FAD-dependent-oxidoreductase
MSLRLISAFSLVFAVTSTAISRPATAAVPSPDETVTCDIFVAGGGLAGAAAAYEGLLAGKTVCVTEITDWLGGQISSQGTSALDERPTQREQFFFPQGYLELRERIEDYYGELNPGDCWVSLSCFFPDDAHSMLQSQLEDAEREGQGTLKWFPSTVVKDLDLNADGTLMERVIGIQHEPTDDAPPLNTYHLSETIEDWYQYEDSDQFKKTIIEFMPQDDDWYVIDATETGELVGLADVPYRLGLDPRSHLEPSSVTESGDRYCTQGFTYTFAMEATEEPQDHPEPDFYAQYEPYYSYELERLASFDLVFTYRRLWSPETGEQDRFGGIGFTKPTPGDISMQNWTWGNDYRPGTAEDNFIYTREQLEESGQLSPGGWMGGLRTETLRRGEEHALGYFHWLVAGTTDSQLGDEFKEPHPNNRFLSGLDSPMGTEHGLSKYPYIREGRRIIGREGEGYPDGFTIWEVDITRNDLTDEYYQETLSDSEYQWLKQELAGTEAIAAMLGEDTDQRARSRIYPDSVGIGHYAIDFHPCMTEHPPEKPGNTEREGTRRAEGQAYPFQIPLRALIPQDIDNFLIAGKSIATSNIAAAAYRVHSFEWSVGAAAGTTAAFALEEDVYPYELVDGRFYSNEQLQGLKRRLEDNGNPTAFPDTSIFNNDWDDWR
>NZ_CP042326.1|WP_146294642.1|697657_698992_+|MFS-transporter
MSEEELLSKTEPLPKQNLNQEELSSPTSEEKVINQTEQPSSVQENSNSLLELQFSDLRIKLQIGFAFLTFVLLGANDAAIGVLLPHWGSYYNVDKAMLSLVFFAGSLGYLVAALNSNFLFRKLGNVKFLSLGKAAFLSGVIIFCFQPPLYLILTVPFLLGFGAAILEAALNAHLTKFPNKSVLLNYLHSFYGVGALLSPFLASQILEADWRWSVIYFGISALSLILLISMRWLFTSADRGNSNSDSENTPVESPLRYRFVWLFAFFLLFYAGAEISLGNWSYSFLTQYRHEDNVLAGWLMSGYWFGLTVGRVCIGPLTNKLGTRKIINLCLVGVMIGVFTLIFMSFSITSAFGLLLTGFCLGPILPTALAFLSNIIPSYLLTGAISFIASLGSLGKAFFPWIAGNIADNLGLEMFLPYIIVLTALMITLWALILARENQSYANS
>NZ_CP042326.1|WP_146294641.1|695945_697346_-|MFS-transporter
MRQNVQKIKNWQKRFKKAPLGFVQLWNMSFGFFGIQFGWTLQMANTSAIYEYLGANPEQIPILWLAAPMSGLIAQPIIGYMSDRTWTRLGRRRPYFLLGAILSSIALIIMPNSSSLWMAAGALWMLDTSVNISMEPFRAFVSDLVPKNQRTLGFGMQAFFIGLGAVMASICPWILNHWFGFNQVVTPEGEIPSTVKISYYVGAAVFLGTVLWTVFTTKEYPPQDLEALKNRQENTGGVFGIIKGIFDKVRTMPELMKQLAWVQFFTWLGIFCVFLYFPPAVGHEIFGATTESSPLYQQGIEWAGICIALYNVVCFIYSLFLSRIAAATSRKTTHAFSLFCGGAGLISLLLVENHYLLLIPMACFGLAWASALTMPYSMLSDVLPMRDTGIYMGIFNAFIVIPQIIAALGLGWVMDNLLSNNRIFALAVGGVSMVIAAVLVQWVKDVAKESQTVGKTPKLAAEPAKE
>NZ_CP042326.1|WP_146294640.1|694778_695861_+|photosystem-II-q(b)-protein
MTTTLQQQQSQNVWERFCQWVTSTNNRLYIGWFGVLMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIAFHFLIGVFCYLGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMLGVAGVFGGALFSAMHGSLVTSSLVRETTENESQNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNFNQSVIDSQGRVINTWADVLNRANLGFEVMHERNAHNFPLDLASGEATPVAMQAPEING
>NZ_CP042326.1|WP_146294649.1|708843_710709_-|hypothetical-protein
MSQITIQCRLVASEDTRHQLWQLMAQQNTPLINELLKQVAEHPEFETWRQKGKLPGGIVSQLCKPLKEDSRFIGQPARFYTSATKLVEYIYQSWLALQQRLQWRLNGQKRWLEILKSDQELCTQAECSLKTLRHQASEILASLQPSTSKSKKKSKKQKNSYGKSLFDAHDNAEDSLTRSAIAYLLKNNCKLPKEEEDPEKFAQRRRKAEIKVERLTKQIESSLPKGRDLTGEQWLETLLTAANTVPKDKEQFKSWQNILLTKPKSVPFPISYETNEDLTWSKNEKGRLCVRFSGLSKQTFQIYCDQRQLKWFQRFYEDQETKRASKKHHSSSLFTLRSARILWQEGTAKGQPWQINYLTLQCTVDTRLWTAEGTEQVKQEKSDEITKILTNMEEKDNLTQTQEAFIKRKQTTRDRLKHSYPRPSKPLYQGQPHLLLGVAFRLEKPATIAIVDGTTGKAITYRSIKQLLGENYKLLNRQRQTKKKQSHQRHKNQKKFATNQLKNSELGEYIDHLIAKAIVKVAQTYQVGSIVLPKLENLRELIQTEVKMRAEQKVPGYLEGQKQYAKQYRIEVHQWSYGRLIEQIKTKANQGGITIEQNQQTIRGSPQEEAKEIAILAYQAR
>NZ_CP042326.1|WP_146294650.1|710776_711214_+|MerR-family-transcriptional-regulator
MNKQFFTSREAAQITGCSLRQLQYWREKEVVVPTIAGTGTGRSVYYSYSELVELKLMESWLAIGFSFDRSRMLLDKLRFYKDKFDYLNPETTDRVMFYWNPDWERLLLDPFERDRAIECLDQGLAVIPLWFDQIHHQLRLKLKYS
>NZ_CP042326.1|WP_146294651.1|711428_711911_+|hypothetical-protein
MARYSDVEIDNFINEPKPLPSNFKSKIKLKCCKSSKQGSLEIASKYGNKFTVILRQSNFNRLDFSIIVAFKPSNSNKLFHLKRYDGKSHEHTNPIEDEKFYDFHIHTATERYQNYGNGEEDKYAYQTDRFSNYQKAFECMLKDCNFILPSQMQLELDIFD
>NZ_CP042326.1|WP_146294652.1|711920_712700_+|DUF1828-domain-containing-protein
MLTDTVIQDFKRKVCEEVRLLEEGNNRFRVFTPFRFDDGDHLSIVLKKEDNEWLISDEGHTYLHLSYKIHPNDLFSGTRWEIIESTLAEFQVEDRLGELIMRVENDRYGNAFYNFTQALIKISDITYLSRERVKSTFYEDFKALIEENIPKERYDFEWHDEQVDPEGVYTVDCHINNLATPLYLYAINSDNKMKDTAISIFQFEKWDKIFKPVAIFEDETKMTKKALKKFSKICTKQFPSLENNQANIIEYLKKQLQSV
>NZ_CP042326.1|WP_146294653.1|712696_713026_-|DUF45-domain-containing-protein
MVSESKANFKKKVWEWAEKLEVSVEFITLRSMRNKWASCSSTGRLTFDSSLLELPPHLQDYAIVHELLHLQIPNHGRLWQCLMEAHLGDYQSYEKELKEIVRDRMKSKN
>NZ_CP042326.1|WP_146294654.1|713040_713415_-|hypothetical-protein
MAERAKAIQDKFENRQTSTQDTLDVLLQEIERDEKRKQEQARKGFDSLSYFVYQILENAGIEDPQAVSNKIREAFIQYPNWQNSEGELRELRKKVTFAIYAEMDDLEAVTAIVEQVFTKLDQAL
>NZ_CP042326.1|WP_146294655.1|713920_714223_-|transposase
MRRTLRCWEQLLAIHNTRVKPRPNFSPKRGEGINTIEVVKRSSKAFEVLPRRWVVERTFAWLVQNRRLVIDSEKLPEISEALIEMAMTRLMLKRLAISSA
>NZ_CP042326.1|WP_146294656.1|715086_717366_+|heavy-metal-translocating-P-type-ATPase
MTTNKLEQETTTLKLEGMSCAGCASAIEKAISNVSGVETCDVNFGAEQATVGFNPETTNVERIQKAVADAGYGASVYSQDDWLGGQQDEEKAKQEAATKDLKRKTIVGGIISAILMVGGLPMMTGLDIPWIPHWLHNFWLQLVLTTPVQFWCGASFYRNSWKAFKNRAATMDTLIALGTSAAYFYSLFVTLFSGVLREQGITPEVYYETSAVIITMILLGNFFELRARDKTSEAIRKLMSLQARSARVIRDGEVQDIPIEAVQIGDVVVVRPGEKIPVDGEVIEGGSTVDESMVTGESMPVQKQAGDEVVGATINKTGSFQFRATRVGKDTVLAQIVHLVQEAQGSKAPIQNLADQITGWFVPAVIAIALLTFIIWFNAMGNLTLGIINMVAVLIIACPCTLGLATPTSIMVGTGKGAENGILIKGAESLQIAHELNTIVFDKTGTLTVGKPKVTDFVTTIGNDGKKELKLLRLVALVEQQSEHPLAEAVVEYAQSQGIQLEETIQNFNAIPGSGVEATVSDRWLQIGTARWLKEEIGINTDFFSDQAQQWEAEGKTVIWIAVDGELQGLIALADTVKPASTEAVKALRNLGLEVVMITGDNETTANAIARQVGIPRVMAQVRPDQKAEQIVALQKEGKRVAMVGDGINDAPALAQADVGIAIGTGTDIAITASDITLISGDLQGVVTAIQLSRATIRNIRQNLFFAFVYNVAGIPIAAGILYPFLGLLLNPIIAGAAMAFSSVSVVSNALRLRNFKPS
>NZ_CP042326.1|WP_146294657.1|717847_718078_+|TIGR02450-family-Trp-rich-protein
MSKKQKFPHLVGSKWTAQQKTWGWRHFEVVNRKNQGKWVFAEMVASCDPDVRFWINAQQLKDQNLWQPGWKPLKEL
>NZ_CP042326.1|WP_146294658.1|718098_718584_+|SMC-Scp-complex-subunit-ScpB
MNEPRLATKIEAILYLKAQPLSLKEVSEYTQRDRAEVEDAILELMSDYAHRDSALEVVETPNGYSLQLRSTYQNILQDLVPAELGVGALRTLAAIALKNPIRQTDLIELRGSSAYQQVQELVELELVKKRREGRSYWLEVTEKFYQYFEIDNINEQLLMNN

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Crispr_ID: NZ_CP042326_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_6

1788826-1789078

Orphan

I-D,II-B

Consensus_repeat	Method
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	CRISPRCasFinder
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	CRT
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP042326_6

>merge|NZ_CP042326|6|1788826-1789078|CRISPRCasFinder,CRT,PILER-CR
CGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAACGAAGCTGGAATTGAGTGCGTTTTCCAGTTTAGCTCTGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAACAAACTGAAAAAAGCTATCTCAAATTGTGGAGTATGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAACCTTGTCTTGGCTGTGCCTTGGGCGCATTCTTATTGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC

>NZ_CP042326|6|6|1788826-1789078|CRISPRCasFinder
CGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	GAAGCTGGAATTGAGTGCGTTTTCCAGTTTAGCTC
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	AAACTGAAAAAAGCTATCTCAAATTGTGGAGTA
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	CTTGTCTTGGCTGTGCCTTGGGCGCATTCTTAT
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC

>NZ_CP042326|6|3|1788826-1789078|CRT
CGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	GAAGCTGGAATTGAGTGCGTTTTCCAGTTTAGCTC
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	AAACTGAAAAAAGCTATCTCAAATTGTGGAGTA
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC	CTTGTCTTGGCTGTGCCTTGGGCGCATTCTTAT
TGTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC

>NZ_CP042326|6|4|1788827-1789078|PILER-CR
GTTTCAATCCCTCATAGGGATTATTGGTTATTGAAACG	AAGCTGGAATTGAGTGCGTTTTCCAGTTTAGCTCT
GTTTCAATCCCTCATAGGGATTATTGGTTATTGAAACA	AACTGAAAAAAGCTATCTCAAATTGTGGAGTAT
GTTTCAATCCCTCATAGGGATTATTGGTTATTGAAACC	TTGTCTTGGCTGTGCCTTGGGCGCATTCTTATT
GTTTCAATCCCTCATAGGGATTATTGGTTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146295584.1\|1791915_1793226_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP042326.1\|WP_146295583.1\|1790110_1791886_+\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236014
NZ_CP042326.1\|WP_146295586.1\|1794847_1795897_-\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP042326.1\|WP_146295590.1\|1800466_1801195_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180984
NZ_CP042326.1\|WP_146295587.1\|1795900_1796866_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NZ_CP042326.1\|WP_146295580.1\|1787177_1787642_-\|DUF2214-family-protein	unknown	unknown	gnl\|CDD\|378336
NZ_CP042326.1\|WP_146295582.1\|1789438_1789951_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146295588.1\|1797029_1799240_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP042326.1\|WP_146295574.1\|1781865_1782240_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377040
NZ_CP042326.1\|WP_146295577.1\|1784702_1784915_-\|DUF2555-domain-containing-protein	unknown	unknown	gnl\|CDD\|371217
NZ_CP042326.1\|WP_146295589.1\|1799343_1800249_-\|phosphorylase	unknown	unknown	gnl\|CDD\|226803
NZ_CP042326.1\|WP_146295575.1\|1782304_1782607_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225148
NZ_CP042326.1\|WP_146295572.1\|1780242_1780944_+\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|180320
NZ_CP042326.1\|WP_146295585.1\|1793372_1794842_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235998
NZ_CP042326.1\|WP_146295573.1\|1781050_1781677_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP042326.1\|WP_146295578.1\|1785179_1785968_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NZ_CP042326.1\|WP_146295581.1\|1787897_1788536_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NZ_CP042326.1\|WP_146295579.1\|1785973_1787146_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181749
NZ_CP042326.1\|WP_146295591.1\|1801253_1801934_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP042326.1\|WP_146295576.1\|1783500_1784706_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146295584.1\|1791915_1793226_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.51917e-52
NZ_CP042326.1\|WP_146295583.1\|1790110_1791886_+\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|236014	PRK07418, PRK07418, acetolactate synthase large subunit.	0
NZ_CP042326.1\|WP_146295586.1\|1794847_1795897_-\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.53478e-30
NZ_CP042326.1\|WP_146295590.1\|1800466_1801195_+\|SDR-family-oxidoreductase	gnl\|CDD\|180984	PRK07454, PRK07454, SDR family oxidoreductase.	4.6065e-127
NZ_CP042326.1\|WP_146295587.1\|1795900_1796866_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.75831e-131
NZ_CP042326.1\|WP_146295580.1\|1787177_1787642_-\|DUF2214-family-protein	gnl\|CDD\|378336	pfam09980, DUF2214, Predicted membrane protein (DUF2214). This domain, found in various hypothetical bacterial proteins, has no known function.	4.96027e-55
NZ_CP042326.1\|WP_146295588.1\|1797029_1799240_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.57904e-79
NZ_CP042326.1\|WP_146295574.1\|1781865_1782240_-\|hypothetical-protein	gnl\|CDD\|377040	pfam03448, MgtE_N, MgtE intracellular N domain. This domain is found at the N-terminus of eubacterial magnesium transporters of the MgtE family pfam01769. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.	1.44661e-12
NZ_CP042326.1\|WP_146295577.1\|1784702_1784915_-\|DUF2555-domain-containing-protein	gnl\|CDD\|371217	pfam10742, DUF2555, Protein of unknown function (DUF2555). This family is conserved in Cyanobacteria. The function is not known.	1.12609e-25
NZ_CP042326.1\|WP_146295589.1\|1799343_1800249_-\|phosphorylase	gnl\|CDD\|226803	COG4360, APA2, ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism].	1.67957e-83
NZ_CP042326.1\|WP_146295575.1\|1782304_1782607_-\|hypothetical-protein	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	0.00207197
NZ_CP042326.1\|WP_146295572.1\|1780242_1780944_+\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|180320	PRK05948, PRK05948, precorrin-2 C(20)-methyltransferase.	1.19717e-124
NZ_CP042326.1\|WP_146295585.1\|1793372_1794842_+\|amidophosphoribosyltransferase	gnl\|CDD\|235998	PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.	0
NZ_CP042326.1\|WP_146295573.1\|1781050_1781677_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	8.45377e-40
NZ_CP042326.1\|WP_146295578.1\|1785179_1785968_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	3.01677e-28
NZ_CP042326.1\|WP_146295581.1\|1787897_1788536_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	2.92941e-42
NZ_CP042326.1\|WP_146295579.1\|1785973_1787146_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181749	PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional.	0
NZ_CP042326.1\|WP_146295591.1\|1801253_1801934_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	2.05096e-122
NZ_CP042326.1\|WP_146295576.1\|1783500_1784706_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0

>NZ_CP042326.1|WP_146295581.1|1787897_1788536_-|Uma2-family-endonuclease
MESLTLNVPPAVGLTDEQFYQLCIANEPWQLELTQAGELVIMSPTGGESGIRNSNLTTDLNLWNRQAKLGKVFDSSTEFKLPSGAYRCPDVSWVKLERWQALTKEEQKRFPPICPDFVIELRGVQAAEDTSADSPSRSESDVLEKLRLKMQEYRDNGARLGWLIDPQTPLVEIYRPQQDVEVLNFSVDSPPQLFGEEVLPGFILDLTIILNP
>NZ_CP042326.1|WP_146295580.1|1787177_1787642_-|DUF2214-family-protein
MWDSAIVAYIHYLSFGLVLASLIVERQTMKSELTIRQGWVILIADGIYGTAATALLATGVLRLLYFGKGTEFYTENPVFWAKVILFFTIAGISLYPTISYLMWIGKLRQNIAPKLTPFRTNLINWIINIELVGFSAIPLLASMMARGIGLNWLS
>NZ_CP042326.1|WP_146295579.1|1785973_1787146_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MQFAQRLDRIPPYLFAEINRKAQKLRAQGVDLINLGVGDPDLATPQPILETMHEAIEDPHTHNYPPYQGTIAFRKAVTEFMARRYGITDLNPETDVISSIGSKEAIHNTFLAFVNPGDYTLIPDPGYPVYKTATLFAEGTSYPMPLKPENDFLPQLSQIPVEIAQKAKLLWLNYPNNPTGALASLDFFREAVAFCQEHDILLCHDNAYAEIAYDGYQPPSVLQVPGAKDCAIEFHSASKSYNMTGWRVGFVVGNAFGIQGLARVKSNVDSGVFQAIQRAVMTALDTPRENIEAATAVYKQRRDILVEGLKSLGWEITPPKATLYMWVPVPPRYTSQEFANLLLDKCGIIVPPGNGYGASGEGFFRLALTISADRIQEAISRMKASGIHYP
>NZ_CP042326.1|WP_146295578.1|1785179_1785968_+|HEAT-repeat-domain-containing-protein
MTAYNAETAIAHLNQTEDLSLRYYAAWWLGKFRITDSAAMTALLNALEDEADRSPDGGYPLRRNAARALGKLGNPQAVPSLIENLNCSDYYVREASAQALEEIGDSRAISPLLALLEGGVEAAKPMPGKPHLVQPYEAVIEALGSLGATIAIAQIQPFLDHPVEKVQFAAARALYQLTKEEKYGMRLVEGLKAEKLPLRRSALMDLGATDYLDAGSAIAQTPAENSLKLIALKGLLENHLQHQDQPLSPEAVQLLTLMDSLL
>NZ_CP042326.1|WP_146295577.1|1784702_1784915_-|DUF2555-domain-containing-protein
MNTISLSHEEIEALTAEDVKQLAERLDQDDYNSPFEALQDWHLLRAISFHNWELVEPYRHLLDVEAFDEA
>NZ_CP042326.1|WP_146295576.1|1783500_1784706_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MRDGKNVLISIGGGIAAYKVCQLISHLYQGEISVRVILTNAAQQFITPLTVSTLSRHHAYTDTDFWHNTARPLHIELGEWADLLVIAPLTANTLGKLVYGLADNLLTNTVLASNCPILLAPAMNTQMWEQPSVQRNWEAIRQESRYHLLEPSGGRLACDHVGKGRMAEPDQIFQTIQSLLYTQGKRDFWGKNVLINTGGTREYLDPVRFLGNPATGKMGSAIAQAALNRGATVTLVYGQSSQITVTPSPQLNLISVVTAEEMLEAMVAHFANADYTILSAAVADFKPAHYSPQKRPKQDISHSLPLKAVPDIAKTLSEQKQPQQILVGFAAQTGDFIKPAQEKLQRKNLDYIVANPIDQAEGGFGSDQNQCVILSQTGEKKEISLCSKLELAHQLLDVLIS
>NZ_CP042326.1|WP_146295575.1|1782304_1782607_-|hypothetical-protein
MPINVLQLILQQSSLEVASRCVNQVEIDKLLQSLPTLSLTQRILVLLLLEKPKACYVFNLLEREQQTQMFEAMEISEKLWLLEALETDFQDSLNHKNFNS
>NZ_CP042326.1|WP_146295574.1|1781865_1782240_-|hypothetical-protein
MYQNTLHSFFDVIAQQMSDRFRVEKVADSLSQIDIEQRILAFQLLGKGVALATLEYLTPTEQSELLLAMDADELIELLESMKPEERMELFAHLPNEVVEQLMAKLHLEFQTIIHSLFGRCLINL
>NZ_CP042326.1|WP_146295573.1|1781050_1781677_-|magnesium-transporter
MTQNQEVAQDTEKLLARDKKWSERLVTGQARYAIQLRIIFLVVTLMGGMAVGGVIEAYEGTLEAVAAAAIFIPVVMDMGGNVGTQSTTVFARGLAWQHINAGDFFPYLARELRISLAMGAILGLAGGVITYVWQAAPNDIPGLAPAVGISLFIVIVLASMLGAFLPWVMLKLGIDHGPGADPFITTIKDFVGLMIYFWLVAQLVDVSL
>NZ_CP042326.1|WP_146295572.1|1780242_1780944_+|precorrin-2-C(20)-methyltransferase
MSKLYGVSVGTGDPELITVKGLKCLQNANIIAFPEGIRGKQGIAQTIITPWLESHQTLLPLKFPYVQDETELTQAWETAAKTVLTYLQNGEDVTFACEGDISFYSTFTYLAQTVQKLDSNVVIETIPGVCSPMAAAAELGIPLTTRSQRLMILPTLYHLEELETALNTAEVVVLMKFSSLYPQIWELLDKKGLLASSQIVEKATMPDQVVYKDLRNMDQLKLSYFSIMIINHY
>NZ_CP042326.1|WP_146295582.1|1789438_1789951_+|hypothetical-protein
MIIIVPGFHPPDLTADFLQGMGWQNLSPEELLLLPEKILPYDSIQIFQYISQQVSLETPVYLIAFSAGVAGAMGAAVIWEQQGGKIEHFFALDGWGVPILPSFPTTRISHDEFTHYTSQLLGRGKQPFYCSPPVEHLALWQTPHLAYGWWEIKYGCKVYSSVAKTINEMI
>NZ_CP042326.1|WP_146295583.1|1790110_1791886_+|biosynthetic-type-acetolactate-synthase-large-subunit
MGYPDQSQKIASPPETAQTVQRATGAFALMDSLRRHGVTHIFGYPGGAILPIYDELHRAEARGDLTHILVRHEQAAAHAADGYARATGKVGVCFATSGPGATNLVTGLATAHMDSIPMVAITGQVARPAIGTDAFQETDIFGITLPVVKHSYVVRHASDMARIIAEAFHVASSGRPGPVLIDIPKDVGFEECDYVPVLPGQVNLRGFRPTQKGNARALTQAIKLIEASERPLLYVGGGAITSGAHQELQKLAEHFQIPVTTTLMGLGSFDENHPLSVSMLGMHGTAYANYAVSECDLLIAVGARFDDRVTGKLDEFASKAKVIHIDIDPAEVGKNRAPEVPVVGDVRTCLQQMLDRIAELGIPKNEERTKAWLERINGWRKTYPLVVPQYDDFLSPQEVIVEIGKQAPYAYYTTDVGQHQMWAAQFINFGPRRWISSSGLGTMGYGVPAAMGVKTAVPDQQVICVSGDASFQMNLQELGTLAQYGINVKTVIINNGWQGMVRQWQQTFFQERYSASNMQSGMPDFVKLCEAYGLKGIAVRDRANLSEAITEMLNHDGPVVLDAQVKKDENCYPMVAPGKSNSQMLGLQGQP
>NZ_CP042326.1|WP_146295584.1|1791915_1793226_-|HAMP-domain-containing-histidine-kinase
MFQTTRRRLALWYATVTAILLLFFAAGMYGYVRSTLIERIDDTLKHVVEVVERSLIIEPIATEDNGYRLNIETNFQNNTNTLEDDHIELEWFNPQGELLWSTFSETLDHPLHKDRLAETVHLKTGYLLRQITKPIKFQKQTLGYLRVSHPWFEVTKPTRQLLLDLSLGITIMVILVAGISWWLSGIAIQPVKESYNSLKQFTADASHELRNPIAMIQTNVQMALNYPDSNLQQQQLQVIERLTQRLGKLVNDLLFLARSDSGMLEIKQQSVSLDALLMEVVEEQSAIAQQKGINLNLEIPESNEDQGFMIQGDWDQLARLFTNLISNAIEHSNSDELTTSSTVTIQLSPYKRNHHHGLKVQVQDTGKGIPQEEIPHLFDRFYRVSPYPKMTETKGSTGAGLGLAIARAIVENHQGQIQVNSVPQQGTTFTVIFAQS
>NZ_CP042326.1|WP_146295585.1|1793372_1794842_+|amidophosphoribosyltransferase
MSQPTVLPSDEAPDKPEEACAVFGVYAPGQDVAKLSYFGLYALQHRGQESAGIATFNSNGVRLHKDMGLVARVFDEETLLQLPGNIAVGHTRYSTTGSSLVANAQPVVIPTRLGSLALAHNGNLVNAPQLKKCLEEDNYEFFSSTDSEMIAVAISQEVDSGKDWLEGAISAFNRCQGAYSLVIGTPKGLMGVRDPHGIRPLVIGVLADNPQHYVLASETAGLDIIGAEYVRDVEPGEIVWITEDGLASYHWSEKPEPKLCVFEMIYFSRPDSMVNNESLYSYRLRLGQQLAKESYVEADSVIPVPDSGVPAAIGFSHQSGITFEEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVISGKRIIMVDDSIVRGTTSRKIVQALRDAGATEVHMRISSPPVTHPCFYGIDTDNQDQLIAATKSVEEIAEKIGVDSLAYLSWEGMLKATGEDPDHFCSACFTGDYPIEIPDQVKQSKLLLESQHCRLPQ
>NZ_CP042326.1|WP_146295586.1|1794847_1795897_-|WD40-repeat-domain-containing-protein
MKSRIAFQPTWEKHLSDYITAVKWSKTGDYLAVSSAAGEVILFRGERLEQVLLQSPTGFSVDCLEFSHDDQFLACGGQSGTVTIWNLSTDFPQCVSNLEYPSTWIDHLTWNPVNNELVFSLGKYAQVWDAKSQEIITTLNFASSSVMDLDWRNDGLWLAVGGYKATQVWNCRDWDDDPEIVEVPSASTTVKWSPDCRYLACGDIDSTLVVTEWGNPTPWLMQGFTGKVRQLAWSAFPTRSGAPLLAAGSGCDIVVWQRSKNENVGWSDEVVSHESSISAIAFHPKTVTLASVAKDGKVNLWHRGQKLLQSLDGAFNAFTCLHWHPKGSHLVAGGEDGEIILWSNSQRHS
>NZ_CP042326.1|WP_146295587.1|1795900_1796866_-|GTP-binding-protein
MVATQTSVPVTVLTGYLGAGKTTLLNRILTHEHGKKVAVVINEYGEVGIDNQLVIDTDEEIFEMNNGCICCTVRGDLIRMIGNLMKRRDKFDHLVIETTGIADPAPVIQTFFMDEDVREQTNLDAVVTVVDAKHIHQHWDAEEAQEQIAFADVVLLNKTDLVTAEELQTLEQRIRSMNAMAKIYPTQDAKVEMDHILGVQAFNLDRALEVDPDFLGEDAHEHDETVGSIIINESGELDPEKLNNWIGELLRDRGPDIFRMKGILNVKGEENRVVFQGVHMLFDGKADRPWLPNETPKNELVFIGRNLDEAELKSGFQSCLT
>NZ_CP042326.1|WP_146295588.1|1797029_1799240_+|response-regulator
MPSDPLESKLKQLQEQQALILEQIDRAIALFDQNHCLITYNQAFASLGNFSQEWLNSHPSQAEILNQMAQEGNWSTPQQQILEDIIKKADSNPTPCNIEQPSGENLHILVTATSDGGYLLNIRQLSMKLDSEGIINRELRRLTFLLGLTERLQPATDIKTIGQFALSYLIESTNAAFGDVKVITGDGENRRAGLLVNEITSQFIATYGDMIPEMEELMKEGIPYGQGLLWEVVETGKPLFVEDYANHPQAVNTFRNPGIGQLGIFPIPGHSGEIIGVLTLESRGGNSLEDQVQEDMVLAACRTLGVAIERAKVQQNLRQANEELAQASQMKSEFLASMSHELRTPLNSILGFADLLERQRKDPLSENQIKQIQAIKRSGEHLLQLINDILDLSKIEAGKTELELQPVVIHSLCNEGLRMVQPRADKKRIALSLELDYQIEIAQLDERRVRQILINLLSNAIKFTPEEGKVKLSGSLRYGSQLLEEARPDHSPVHSSTPYLCLEVSDTGIGIPKEKQSLLFRPFQQLDSSLTRRHEGTGLGLALTKRLAELHGGTVSVESEENKGSTFRVWLPLTELRAEKEETEIIEEADSQEEINRPLGQEKSQETDSPRILVVEDQPFNQALICQVLELEGYSVEVIYDGKTMQELMEAELRSRELLPHLILLDIQLPEVDGFEILHQLRQTPYWQDLPVIAITAMAMPGDRDRCLKAGANDYLAKPLHLETVIQKVKELIMQF
>NZ_CP042326.1|WP_146295589.1|1799343_1800249_-|phosphorylase
MLLLPNQFWQSVKITQHKAIESQALQPIPTEYEIIEDQGIPFLVRILKILKKKEAEKQKQAQYQETTGKDFDPFLPYEKDLFVSDISDTHICLLNKFNVVENHLLIVTREFEEQENLINQADLTALCACLQKVNGLGFYNSGELAGASVKHKHLQFIPNSLAPNLEELPITAALKTANFLGEVGSISLFGFHHGFTWLNLDWNLSPEEIAKKVLQYYQMLLETVNGKDTTNYNFLMTREWMLIVPRKQEKFQSIGVNSLGFAGGLLVKDQEELELVKKIGPLKILEAVGYSRNYSRSNSVP
>NZ_CP042326.1|WP_146295590.1|1800466_1801195_+|SDR-family-oxidoreductase
MEESQSRQKALITGASSGIGKETALAFAKAGVDLALVGRSQEKLDAVISEVSQYSVQVKSYQIDLAATSTVKGNIKDIVTDFGSVDILVNNAGMGYTNPLSETPLEEWEQVLNLNLTSVFQCIQGVLPTMRDRARGTIINIASIAAHSPFPSWGAYSVSKAGIITLSKALSGEEKENGIRVITITPGAVNTPLWDTDSVKMELNRDAMLNPQVVAQTIVQAALLPQQAVIEEMTLMPSAGAL
>NZ_CP042326.1|WP_146295591.1|1801253_1801934_+|GTP-cyclohydrolase-I-FolE
MTTASSNSSMSNGSGKVNTQVSLNSASSVEAAVTQDSNTEEMMQAVRSILQGVGEDPDREGLKKTPKRVAEAMQFLTQGYEQSLEELVNGAIFDEGHNEMVLVRDIDVFSLCEHHMLPFMGKAHVAYIPNQKVVGLSKLARIVEMYSRRLQVQERLTRQIAEAIQSILDPQGVAVVMEATHMCMVMRGVQKPSSWTVTSAMLGVFQEEQKTREEFLNLIRHQPSFH

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Crispr_ID: NZ_CP042326_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_7

3019285-3019385

Orphan

Consensus_repeat	Method
GTCTTGAAGTTGCCAAAAATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042326_7

>merge|NZ_CP042326|7|3019285-3019385|CRISPRCasFinder
GTCTTGAAGTTGCCAAAAATCCCAATACATCAGAAGAATCACTTGAGAAACTTGCTAAAAATGAACACTGGGAAGTGCGTCTTGAAGTTGCTAAAAATCCC

>NZ_CP042326|7|7|3019285-3019385|CRISPRCasFinder
GTCTTGAAGTTGCCAAAAATCCC	AATACATCAGAAGAATCACTTGAGAAACTTGCTAAAAATGAACACTGGGAAGTGC
GTCTTGAAGTTGCTAAAAATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146296949.1\|3021070_3021892_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP042326.1\|WP_146296939.1\|3005048_3006125_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP042326.1\|WP_146296940.1\|3006145_3006829_+\|ATP-dependent-Zn-protease	unknown	unknown	unknown
NZ_CP042326.1\|WP_146296952.1\|3024186_3024510_-\|30S-ribosomal-protein-PSRP-3	unknown	unknown	gnl\|CDD\|235062
NZ_CP042326.1\|WP_146296937.1\|3003065_3003761_+\|aldehyde-oxygenase-(deformylating)	unknown	unknown	gnl\|CDD\|237879
NZ_CP042326.1\|WP_146296944.1\|3010723_3011437_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226579
NZ_CP042326.1\|WP_146296950.1\|3022166_3023621_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|214349
NZ_CP042326.1\|WP_146296956.1\|3028094_3029090_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|215135
NZ_CP042326.1\|WP_146296951.1\|3023704_3024121_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|214351
NZ_CP042326.1\|WP_146296942.1\|3007938_3009510_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042326.1\|WP_146296954.1\|3025436_3026411_+\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NZ_CP042326.1\|WP_146297383.1\|3011587_3012412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146296938.1\|3003968_3004997_+\|long-chain-acyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|184944
NZ_CP042326.1\|WP_146296953.1\|3024565_3025345_+\|TIGR01548-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|273685
NZ_CP042326.1\|WP_146296943.1\|3009533_3010562_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|177082
NZ_CP042326.1\|WP_146296947.1\|3019910_3020030_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236490
NZ_CP042326.1\|WP_146296948.1\|3020067_3021027_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042326.1\|WP_146296941.1\|3006832_3007873_-\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270284
NZ_CP042326.1\|WP_146296955.1\|3026592_3027921_-\|trans-splicing-intein-formed-DNA-polymerase-III-subunit-alpha-C-terminal-partner-DnaE-C	unknown	unknown	gnl\|CDD\|236003
NZ_CP042326.1\|WP_146296945.1\|3014443_3016969_+\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|224588

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146296949.1\|3021070_3021892_-\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	1.68767e-119
NZ_CP042326.1\|WP_146296939.1\|3005048_3006125_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP042326.1\|WP_146296948.1\|3020067_3021027_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.44451e-12
NZ_CP042326.1\|WP_146296952.1\|3024186_3024510_-\|30S-ribosomal-protein-PSRP-3	gnl\|CDD\|235062	PRK02724, PRK02724, 30S ribosomal protein PSRP-3.	2.57527e-61
NZ_CP042326.1\|WP_146296937.1\|3003065_3003761_+\|aldehyde-oxygenase-(deformylating)	gnl\|CDD\|237879	PRK14983, PRK14983, aldehyde decarbonylase; Provisional.	6.4995e-171
NZ_CP042326.1\|WP_146296944.1\|3010723_3011437_+\|hypothetical-protein	gnl\|CDD\|226579	COG4094, COG4094, Predicted membrane protein [Function unknown].	2.07196e-70
NZ_CP042326.1\|WP_146296956.1\|3028094_3029090_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|215135	PLN02244, PLN02244, tocopherol O-methyltransferase.	2.43628e-57
NZ_CP042326.1\|WP_146296951.1\|3023704_3024121_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|214351	CHL00063, atpE, ATP synthase CF1 epsilon subunit.	9.45672e-63
NZ_CP042326.1\|WP_146296942.1\|3007938_3009510_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.0535e-59
NZ_CP042326.1\|WP_146296954.1\|3025436_3026411_+\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	1.74136e-13
NZ_CP042326.1\|WP_146296938.1\|3003968_3004997_+\|long-chain-acyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|184944	PRK14982, PRK14982, acyl-ACP reductase; Provisional.	0
NZ_CP042326.1\|WP_146296953.1\|3024565_3025345_+\|TIGR01548-family-HAD-type-hydrolase	gnl\|CDD\|273685	TIGR01548, Imidazoleglycerol-phosphate_dehydratase, haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. This model represents a small and phylogenetically curious clade of sequences. Sequences are found from Halobacterium (an archaeon), Nostoc and Synechococcus (cyanobacteria) and Phytophthora (a stramenophile eukaryote). These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs. The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.	4.14972e-70
NZ_CP042326.1\|WP_146296945.1\|3014443_3016969_+\|cell-division-protein-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.29814e-56
NZ_CP042326.1\|WP_146296947.1\|3019910_3020030_+\|hypothetical-protein	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0.000118102
NZ_CP042326.1\|WP_146296950.1\|3022166_3023621_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|214349	CHL00060, atpB, ATP synthase CF1 beta subunit.	0
NZ_CP042326.1\|WP_146296941.1\|3006832_3007873_-\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270284	cd13566, PBP2_phosphate, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.05309e-33
NZ_CP042326.1\|WP_146296955.1\|3026592_3027921_-\|trans-splicing-intein-formed-DNA-polymerase-III-subunit-alpha-C-terminal-partner-DnaE-C	gnl\|CDD\|236003	PRK07373, PRK07373, DNA polymerase III subunit alpha; Reviewed.	0
NZ_CP042326.1\|WP_146296943.1\|3009533_3010562_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|177082	CHL00180, rbcR, LysR transcriptional regulator; Provisional.	0

>NZ_CP042326.1|WP_146296945.1|3014443_3016969_+|cell-division-protein-FtsK
MYFNQPESIKEIINKLRGFSILWLDTEIADWQTSNPKLSLIQVLSDPKETSGNNAYVLDVLEKPELINLFIQQIIREATIEKVFHNAAFDLKYLEKDTAKNITCTYKIAQKISKKNLGTSNLKLKTLAIELCQFSKNEVDTQQQTSDWGTRPLSEKQLYYAEMDVVYLAHVHQYLLNFKPMSDQNSFPKFTVSDVRVAFECPRLFYLSKHFGGRTLFVPSNQPKGIGQPFHKLADKFIKLAKTNPEFKELFKPSAKDLDVEYISQEMQRLFYEQTFFPILEKVATSKPETVPALQQVWEGLRGLINHWAELLVSNRFYSNYHNVISKTFVSQELSMTCDYPLPKKKTQKIEGKFDTLIRDLKKDRFCMVEYKTYAPVDSAAQLAQVALYSYILHLQKQQPVDSAVYCVLPEFKNYYYTWEELKDTVHELTPFKLQQMRDWLQWEPSQPDPPPETNQPEKLCPICPQKETCQSYFPKENQIIPSPAVEKEEEIITPSDEPIETEELGKQLENILQAYGVGVDYQGAIVGASFIRLKLKPHLGVKVVSILNRATDIQVQMGLSNLPLIAPQAGYISVDLPREKRQVLPFQDYIQRENNGFDIKIAIGVDLEGKLIEADLSDANTCHFLVGGGTGSGKSEFLKSLVLSLIERHTPEQVKIALVDPKRVTFPDFENSDWLMSPIIKERDRAIEFMEELVSKMEERYHLLEKAKCADLKRYNQQLTQQGKNPVPHLVCVFDEYADFMADKEIAKQLESSIKRLGGMARAAGIHLIISTQRPEAKIVTPIIRSNLPGRVALKTNSEGDSKIILGGNQTEAAYLLGKGDLLYLGSGNLLRLQSLLAST
>NZ_CP042326.1|WP_146297383.1|3011587_3012412_+|hypothetical-protein
METKQLKMLLKLLGEEGYNAKIRAVKPNSKSTISECNRICYQLRDRGWVDLTETIEKIKITPSGKALLKVDPSEVPMSKKELKILNRCQSRTIKTTEAETKVKPTEERNKLINSLIDRGFIAVAQAKPETITLNEAGKHFLLKEYNPKGTSPTFTLDMLGNYINFLRQHQSSVITETKPEPDHHQLSDSEILELIIQLDKEYNTNNYLPIFYLRDKLQPPLKREELDQALYRLEENDKIQLSSLTEAEHYTQKQIQAGIPQPIGGSLFFIQVVR
>NZ_CP042326.1|WP_146296944.1|3010723_3011437_+|hypothetical-protein
METSWFTSSHWVMLGLLLGFAVAHSGLAALRPWAEKLIGARLYRVGFALISIPLAVILIVYFFNHRYDGLQLWQVQGQPGVFYLVWTLSAISFLFLYPATFNLLEIAAIQKPQVHLYETGIIRITRHPQMVGQIIWCIAHTLWLGTSFTLVTSLGLIAHHLFGVWHGDRRLTNRYGNAFLEAKERTSVIPFLAILQGRQTLKLQEFLRPAYLGVALFTYGLWKAHPWLMEVTAKVNF
>NZ_CP042326.1|WP_146296943.1|3009533_3010562_-|LysR-family-transcriptional-regulator
MSDLPFSLDQLRILKAIAAEGSFKRAADTLYVSQPAISLQIQNLERQMNVPLFDRGGRRAQLTEAGQLLLTYGEKILSLCQETCRAIEDLENLQGGTLLIGASQTTGTYLLPRMLGTFRQKYSDVSVQLQVHSTRRTSWSVANGQVDLAIIGGEIPTELQDTLEIFPYAEDELALIMSGSHPMAKETAIPKEDLYKLNFITLDSQSTIRKVIDQVLTQSGINPKRLNIEMELNSIEAIKNAVQSGLGVAFASISAIEKELQMGTLYRINIEEVVVKRRLSLIINPHRYRSKAAAAFIQEILPQFCTNGWFTGTEVTPHPAHDPSQRPFPESVIENSPYPEIT
>NZ_CP042326.1|WP_146296942.1|3007938_3009510_-|protein-kinase
MKTYCTRPNCSQPINEFSELDDRAELQTSQQKYCNCCGMPQILAGRYIPQQLLGKGGFGAAYLAIDRYSTQLRQCVVKQFQPSASFREKHLKTAEKLFRREAEVLESLGNHHPQIPDLYAFFPLIASEGEEEKQFFYIVQQYIDGETLEQELQRKGRLQEAEIWDLLENLLSILKFVHEHNSIHRDIKPSNIIRDREGKIYLLDFGAVKRVTGASTGNNYSTGIFSMGFAPPEQMHGREIYPSTDLYALAATCMCLLTGQPIQELYDSYNNQWRWDICPEISEKLCQILQKMLLATPKDRFASAEGVLSAFKEEENTEVKAQITESNASEESILKQPANLQSLLSVSQPPQTNPPEKKEEQEVTPVQSSEKDVSPSTEKQVSENAPTEVKTTHQSSVRSDPPLEKTPSKRSNFPLWEILANVGFTGSEGALLLIALTSVFSFPAISVGLWGMTMGGLIYAQWKRWIEKFDLLILGGMTLGLVIFIPPLSNPPALIVVVATVVAGAGAIALVTLLRLILQLMAR
>NZ_CP042326.1|WP_146296941.1|3006832_3007873_-|phosphate-ABC-transporter-substrate-binding-protein
MAQKNENLILVPTLLITLTILSVGVWWLWQNVDDNEQYTENTDDSSLRAPNTLGEVSNVPSGSFSYFGNPAWGSIQEGIDPIIREIHPQFQIRYSTFLSQTSEQESEIVEQLKNNQIAFSQVSSPLTNEQGATTIEVDGNSLEQIPIALNVIAIAVNRNLDISGLSLEQLQGIYTGEIRNWEEVGGPNLEIIPYSDPEEEKLTVRFFLEDVLDEENLSPEVETVENPTVALRKVSENEGAIYYGKALQILRNCDIKPLPLENQENELVAPYQGSLVSPEECRETGAAHQINRDAFQNGDYPLTRPWFIVFNKNGRHNERAGRTYAKLLLTQQGQHLLRNQGLISIR
>NZ_CP042326.1|WP_146296940.1|3006145_3006829_+|ATP-dependent-Zn-protease
MQPLSLNILAIGVFAMTMFALIAPIFNIPVIYPAGVTLTVMGLLTVDTLAWENRGVTLFLDLFSTAKQRERVLHHEAGHFLVAYFLGIPITGYSLTAWEAFRQKQPGNGGVQFDTTPLENSGTQPNQINLMLDRFCTVWCAGIAAEILYYGQAEGGADDRAQLQLVLSELGYPQSQRQQKEDWAKLQAKSLLERHEETYQALVKVMRQRASVETCEQIIQYNSQLQA
>NZ_CP042326.1|WP_146296939.1|3005048_3006125_+|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MSKSNRRTFLLDFEKPLCELESRIEQIRELATENQVDVSDQIQHLEEKAVQLRKEIFSTLTPAQRLQLARHPRRPSTLDYIQAMSEEWFELHGDRAGDDDPALVGGIARLNGRPVMMLGHQKGRDTKDNVARNFGMASPSGYRKAMRLMEHANHFRMPICTFIDTPGAWAGVEAEKTGQGEAIAYNLRQMFSLDVPILCTVIGEGGSGGALGIGVGDRILMLEHAVYTVATPEACAAILWKDSGKSEQACEALKITAWDLKDLGILDQILSEPVRGAHADPITAANFLKEALISNLDELMQLSPQQRKEQRYQKFRNIGKFTDLAANGQLQLPSENETNGKSYHHIEEETSSSHFLSY
>NZ_CP042326.1|WP_146296938.1|3003968_3004997_+|long-chain-acyl-[acyl-carrier-protein]-reductase
MFGLIGHLTSLEHAQKVAKQLGYPEYHEQGLDFWCSAPPQIVDEIKVTSLTGETITGKYVESCFLPEMLTQRRIKAAIRKILNAMAQAQKANIDITALGGFSSIVFENFNLQNNRQVRNVELDFRRFTTGNTHTAYIICQQVVQGAQQIGIDISQATIAVCGATGDIGSGVCRWLNTNTAVKNLLLVARNQERLDTLQSELGRGKILPMDEALSQADIVVWVASLPKGVEISAEALKKPCLIIDGGYPKNFDSQVQHPEIAILKGGIVEHSLDIEWKIMELVNMETPNRQLFACFAEAMILEFEKWYTNFSWGRNEITVTKMDQIGEASRKHGFQPLLLLDK
>NZ_CP042326.1|WP_146296937.1|3003065_3003761_+|aldehyde-oxygenase-(deformylating)
MPDVATTPTLDYTSETYKDAYSRINAIVIEGEQEAKDNYIHLIDLLPDSKDELTRLSKMEARHKKGFQACGKNLNVTPDMEFAQEFFSELHQNFQQALAEGKVVTCLLIQALIIECFAIAAYNIYIPVADPFARKITEGVVKDEYSHLNYGEEWLKANFDSVKEELEQANKENLPLVWKMLNKVAADAEVLGMEKDALVEDFMIAYGEALSNVGFNTREIMRMSAYGLREG
>NZ_CP042326.1|WP_146296947.1|3019910_3020030_+|hypothetical-protein
MTVDQLKNLAKERGITGYSNKKKQALIKFHKDWDKNQNN
>NZ_CP042326.1|WP_146296948.1|3020067_3021027_-|tetratricopeptide-repeat-protein
MPTIPPIKCGLFQFDITDYHAILGVPLGASPEEVRKNYLKVTRILFPDVRKLETQEEEKLADQLLSKLVNPSYETLVKDQAARRDYLLVLDQISDRASNLGESILKSKAAKELLSSGETKIDLNYRKYLNTIAKKEYQEIHKTLERIALISEFNLVYLMLKSDKLTTETTPSSATQKTSQKEIEEVQKENQETTPEETTANLIDPYLRRAQNFINKKDYQKAVIDLREALKIDSKNAKAHTLLGLAYVKQNQLGMAKVHINKALQLDPENEMALEGKQVLQRLSGDSKGSNSSGKKESKEKSNKGGGLLGGLFGKKKKK
>NZ_CP042326.1|WP_146296949.1|3021070_3021892_-|inositol-monophosphatase
MESTYNLQTYLDIATEAALAAGQVLQDYWGNLNQVEEKGRSGDLVTNADRASEKVILEIIQRHFPDHSVLAEESGQQGEAQAEYLWAIDPLDGTTNYAHQYPIYAVSIGLIINGVPEVGVVYNPAQGELFRAATGLGATFNRRPMRVSTTKTLEDSLLVTGFAYDRRETEDNNYAEFCYLTHLSQGVRRSGSAALDLAAVASGRIDGYWERGLSPWDMAAGMVLVREAQGEVTAYDGGDVSLAAGRVVASNQVLHQQLTEALSNTPPIKIKLS
>NZ_CP042326.1|WP_146296950.1|3022166_3023621_+|F0F1-ATP-synthase-subunit-beta
MVSTQTKTNVGRIVQIIGPVVDVEFPTGELPEIYNALRIEEKNESGNDVAVTCEVQQLLGDRVVRSVAMSGTDGLVRGMDVTDTGAPISVPVGKATLGRIFNVLGEPVDQKGDVKSDDQFPIHRPIPKLTDLETKPSIFETGIKVIDLIAPYRRGGKTGLFGGAGVGKTVIIMELINNIAKAHGGVSVFGGVGERTREGNDLYNEMLDSNVINADDLTQSKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVGKQDVLLFVDNIFRFVQAGMEVSALLGRMPSAVGYQPTLGTDMGDLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRALASKGIYPAVDPLDSSSTMLQPDIVGEEHYNTAREVQATLQRYKELQDIIAILGLDELSEEDRLTVDRARKIERFLSQPFFVAEIFTGAPGKYVTLEETIKGFQRILSGELDDLPEQAFYLVGNIEEAIEKAQKMKEEQ
>NZ_CP042326.1|WP_146296951.1|3023704_3024121_+|F0F1-ATP-synthase-subunit-epsilon
MSLNVRVITPDNTVWDATAEEIILPSTTGQLGILSGHAPLLSALDVGVMRLRPQKDWLSISLAGGFVEVEEDEVTILVNSAERGDNIDPEEAQKDYDQAKQRLEVAQSSDQRQEIIQATQALKKARSRLQAATGKAPA
>NZ_CP042326.1|WP_146296952.1|3024186_3024510_-|30S-ribosomal-protein-PSRP-3
MEAVEISSESRFILKVLWLDENVAVAVDQVVGKGTSPLTAYFFWPRNDAWEQLKEELESKSWISEEEKIELLNKATEVINYWQENIKHTPMADAQQHFPNVIFAGSN
>NZ_CP042326.1|WP_146296953.1|3024565_3025345_+|TIGR01548-family-HAD-type-hydrolase
MSSPQAIIIFDIDGVVRDVAGSYRRALADTVEQFTQGAYRPTPEAIDDLKGEGIWNNDWEASRELIYRYFEGQGKPRKNLEIDYEELVAFFQSRYRGSDSHNWNGYIAQEPLLMSKNYLDSLTENNILWGFFSGATRDSAEYVLQHRLELLSPVLVAMEDAPGKPDPTGLFSAIAQLYEENTLPVVYVGDTVADMQTITKAKIAQPERLWLAIGVLPPHVLSSSRSQDYAQRLQEAGAMMVLNNVEELSQQVIQNLITT
>NZ_CP042326.1|WP_146296954.1|3025436_3026411_+|DUF4351-domain-containing-protein
MANQDAIDHDRLFKELISTFFLEFLELFFPQVLDYLEPESVTFQDKEVFTDVTRGERYETDLLAEVRFQEEDSYFLIHLENQASSESNFNQRMFRYFARLHEKFNLPIYPIVIFSYDQPQKQAIHYYQVEFPDFQVLQFNYRVIQLNRLNWRDFLNQANPVACALMSKMNIAPAERPRVKLECLRLLATLQLDPARMQLISGFVDTYLRLSARELEVFNQEFEQIESTTVKEEIMEITTSWKEEGKREGKREGKQEGKQEGKQEGKQELILNLLTYRFGELSSQTQAEIMSLNSSQLDELGLASYNLENEQDLRRWLANSLGNN
>NZ_CP042326.1|WP_146296955.1|3026592_3027921_-|trans-splicing-intein-formed-DNA-polymerase-III-subunit-alpha-C-terminal-partner-DnaE-C
MVKIISRQSLGRQNVYDIGVETDHNFILANGLVASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSNNTDKVEKYIDTCRRMKIDVEPPDINRSQVDFTPDNEKILFGLSAVRNLGLGAIENILKAREEAGGKFASLADLCARVDLHTVSRRALESLIYCGAFDQLMSNRNQLLHDLEPILSWAQSRAKDRASGQTNLFDNAGNEGSEINHKDAPKASPVEDLTASEKLKREKELLGFYVSDHPLKSAQNANQFLSPIVLGDKETIPKKRTVSAIVLVSEIKKIITKNNDPMAFVQLEDISGQIEGVIFPSSYERISPYLEEDARLIVWGKIDEKEDRLQMIIDDAEPVEQVKMVIVDFDVQQVRDRANQEKLQKLLKANAAKKNEAKTPVIGRVKMGGQQQLVRFGEQYWVKDPSTVTEQLQEEGFAVKAQSLI
>NZ_CP042326.1|WP_146296956.1|3028094_3029090_+|methyltransferase-domain-containing-protein
MNLVVLILGIIITLLVIGIVLYFITARRYQSGNSVANSYDQWTEDGILEFYWGEHIHLGHYGSPPQKKDFLQAKYDFVCEMANWAGLDKLPASTTVLDVGCGIGGSSRILARDYGFDVTGVTISPQQVRRAKELTPEEVNASFVAGDAMSLSFPDESFDVVWSIETGPHIPDKDSFARELLRVLKPGGILVVADWNQRDERKKPLRWWEKPVMQQLLDQWSHPAFSSIEGFSERLEGTGLVEGNVITDDWTEATLPSWLDTIWQGIIRPQGWMRYGIRGFIKSIREVPTILLMRWAFGTGLCRFGMFRAVRANTENQSQQSLAASADTATS

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Crispr_ID: NZ_CP042326_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_9

3209622-3209821

Orphan

Consensus_repeat	Method
ACCGCAATACTCCCCCTGAAATTCTCCAACAACTGGCTCAAGAT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP042326_9

>merge|NZ_CP042326|9|3209622-3209821|PILER-CR
ACCCCAACACTCCCCTTGAAATTCTCCAACAACTGGCTCAAGATCAAGATATGGAGCTACGCGGAGAAGTAGCTTCTCACCGCAATACTCCCCCTGAAATTCTCCAACAACTGGCTCAAGATGAAGGGGTGGTGGTACGTCGAGAAGTAGCTTCTCACCGCAATACTCCCCCTGAAATTCTCCAACAACTGGCTCAAGAT

>NZ_CP042326|9|6|3209622-3209821|PILER-CR
ACCCCAACACTCCCCTTGAAATTCTCCAACAACTGGCTCAAGAT	CAAGATATGGAGCTACGCGGAGAAGTAGCTTCTC
ACCGCAATACTCCCCCTGAAATTCTCCAACAACTGGCTCAAGAT	GAAGGGGTGGTGGTACGTCGAGAAGTAGCTTCTC
ACCGCAATACTCCCCCTGAAATTCTCCAACAACTGGCTCAAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146297114.1\|3211354_3212602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP042326.1\|WP_146297117.1\|3213396_3213831_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350313
NZ_CP042326.1\|WP_146297116.1\|3213169_3213400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146297105.1\|3201566_3201986_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146297107.1\|3203336_3204911_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212667
NZ_CP042326.1\|WP_146297122.1\|3220241_3221024_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP042326.1\|WP_146297109.1\|3205453_3205672_-\|DUF2997-domain-containing-protein	unknown	unknown	gnl\|CDD\|314207
NZ_CP042326.1\|WP_146297118.1\|3214627_3216307_+\|GH3-auxin-responsive-promoter-family-protein	unknown	unknown	gnl\|CDD\|377019
NZ_CP042326.1\|WP_146297115.1\|3212735_3213023_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371241
NZ_CP042326.1\|WP_146297108.1\|3204918_3205461_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NZ_CP042326.1\|WP_146297111.1\|3207546_3207921_+\|DUF1257-domain-containing-protein	unknown	unknown	gnl\|CDD\|377725
NZ_CP042326.1\|WP_146297106.1\|3202278_3202881_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP042326.1\|WP_146297403.1\|3218416_3218731_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|377609
NZ_CP042326.1\|WP_146297104.1\|3201004_3201490_+\|allophycocyanin	unknown	unknown	gnl\|CDD\|381265
NZ_CP042326.1\|WP_146297112.1\|3207997_3209104_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293787
NZ_CP042326.1\|WP_146297110.1\|3205886_3207515_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NZ_CP042326.1\|WP_146297401.1\|3201972_3202182_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146297120.1\|3217843_3218323_+\|fatty-acid-hydroxylase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP042326.1\|WP_146297119.1\|3216308_3217505_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|107206
NZ_CP042326.1\|WP_146297121.1\|3218772_3220164_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225070

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146297114.1\|3211354_3212602_+\|hypothetical-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	7.6253e-09
NZ_CP042326.1\|WP_146297117.1\|3213396_3213831_+\|PIN-domain-containing-protein	gnl\|CDD\|350313	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.60941e-59
NZ_CP042326.1\|WP_146297119.1\|3216308_3217505_-\|threonine-synthase	gnl\|CDD\|107206	cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.	5.11225e-101
NZ_CP042326.1\|WP_146297107.1\|3203336_3204911_-\|Hsp70-family-protein	gnl\|CDD\|212667	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family. HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.	7.56272e-74
NZ_CP042326.1\|WP_146297122.1\|3220241_3221024_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.62672e-14
NZ_CP042326.1\|WP_146297109.1\|3205453_3205672_-\|DUF2997-domain-containing-protein	gnl\|CDD\|314207	pfam11211, DUF2997, Protein of unknown function (DUF2997). This family of proteins has no known function.	3.52545e-16
NZ_CP042326.1\|WP_146297118.1\|3214627_3216307_+\|GH3-auxin-responsive-promoter-family-protein	gnl\|CDD\|377019	pfam03321, GH3, GH3 auxin-responsive promoter.	2.27969e-168
NZ_CP042326.1\|WP_146297115.1\|3212735_3213023_+\|hypothetical-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	0.00140909
NZ_CP042326.1\|WP_146297108.1\|3204918_3205461_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	1.98681e-07
NZ_CP042326.1\|WP_146297111.1\|3207546_3207921_+\|DUF1257-domain-containing-protein	gnl\|CDD\|377725	pfam06868, DUF1257, Protein of unknown function (DUF1257). This family contains hypothetical proteins of unknown function that are approximately 120 residues long. Family members include eukaryotic and bacterial proteins.	3.47228e-44
NZ_CP042326.1\|WP_146297106.1\|3202278_3202881_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.05039e-101
NZ_CP042326.1\|WP_146297403.1\|3218416_3218731_+\|DUF962-domain-containing-protein	gnl\|CDD\|377609	pfam06127, DUF962, Protein of unknown function (DUF962). This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein YGL010W has been found to be non-essential for cell growth.	1.66319e-06
NZ_CP042326.1\|WP_146297104.1\|3201004_3201490_+\|allophycocyanin	gnl\|CDD\|381265	cd12125, APC_alpha, Allophycocyanin alpha subunit of the phycobilisome core. Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	2.37862e-100
NZ_CP042326.1\|WP_146297112.1\|3207997_3209104_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|293787	sd00044, HEAT, HEAT repeats. The canonical HEAT repeat consists of two helices forming a helical hairpin. HEAT repeats are found in a diverse family of proteins, including the four proteins from which its name is based: Huntingtin, Elongation factor 3, the PR65/A subunit of protein phosphatase 2A (PP2A), and the lipid kinase TOR (target of rapamycin). The HEAT repeat family is related to armadillo (ARM)/beta-catenin-like repeats.	1.09247e-05
NZ_CP042326.1\|WP_146297110.1\|3205886_3207515_+\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	0
NZ_CP042326.1\|WP_146297120.1\|3217843_3218323_+\|fatty-acid-hydroxylase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	2.39509e-06
NZ_CP042326.1\|WP_146297121.1\|3218772_3220164_+\|amidohydrolase-family-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	6.26792e-10

>NZ_CP042326.1|WP_146297112.1|3207997_3209104_+|HEAT-repeat-domain-containing-protein
MTENKKPKETDAVLGGQTTPKRGAVLGGIEGLKQRLKNSNQQERVIALQQAVQYGDEGLKLVAGATFGDKCELAKADQTPPEILALLDQDPIFRLKKRSEDSNWNVRSKVASNPNTPPEILQQLARDENTNVRSKVASNPNTPPENLQQLAQDEDTNVRQKVASNPNTPSEALQQLARDKDWVVRSGVASNPNTPLELLQQLAQDKDSIVRKEVASNPNPSPKALQQLARDKYCGVRQKVASNPNTPLELLQQLARDEDGWVVRKQVASQPKTSPEILQQLAQDEDERVRARVASNPNTPLELLQQLARDEYGWVREEVTSNPNTPLELLQQLARDEHEWVRKEVASNPNTPLELLQQLARDEYGGGT
>NZ_CP042326.1|WP_146297111.1|3207546_3207921_+|DUF1257-domain-containing-protein
MSHFSTIKIQIKNGDILQQILTELGYQVETNAQVRGYQGNRTNADYVIRQNNGYDLGFRNNQGNYELVADFWGASINEKEFLNQINQKYAHRTLMETVEEEGFDVEEEEVLEDGTVKVVVGKWV
>NZ_CP042326.1|WP_146297110.1|3205886_3207515_+|AAA-family-ATPase
MTARPTSKDAVLSPQHPHQETIAQLDLMLRSRYPLIYLVATEEEPIEEVLEQVSHNSQPQRQVIYWDIVRGWSDNHKDKASIIGALSRVHTTKEDQGTLFVFRDLHGILKNPEADKNAPIIRELKNLTRELKTSRKTILLLSHRLEIPPELSEEITVLDFPLPNLKEIDYLVSQLVTPDKLKLEGLGKEQFLKACQGLSRAKIRRVLAKALAAKQEINETDIDVVLEEKRQTIRQTGILEFSPAPDSLKSVGGLENLKEWVRMRKDAFSDEAKRYGIPTPKGLLLVGIQGTGKSLSAKTIAHEWRVPLLRLDTGRLFGGIVGESESRVRQMIQLAEAMSPCILWIDEIDKAFGSISSGVSGDSGTSERVFGSLITWMQEKTQPVFIVATANNVQVLPAELLRKGRFDETFFINLPTEKERKAIFRVHLQQIRGSRLQEFNLDLLAQSSENFSGAEIQQAIIDAMHLAFGDGESGKRRDFTTEDILAALEETVPLSAIAHQQIEALKKWAAEAGARTASKDDDLLQELRNYQSSTGINPIQVD
>NZ_CP042326.1|WP_146297109.1|3205453_3205672_-|DUF2997-domain-containing-protein
MAEYQRVEYRIGKDGKITEQVIGASGESCKETTSDIESALGEVESQELLPEYYEGEENLANQETQFLQQGNE
>NZ_CP042326.1|WP_146297108.1|3204918_3205461_-|nucleotide-exchange-factor-GrpE
MSSEQELFWSSWLFLLAAIIGILWLQDQWSKPTENSKASPSTSPDTEDFKEECQRLRKQLETQRETVKEEIQQVTFEQLQSLLTQFPSARKMAEAKPNLPASNFSALFTPLENLLEEWEITPIGEVWQQVEFDPQSHQADSEEIEVGEKVYVRFVGYRQGEKILVPAKVSRTLPAGVVES
>NZ_CP042326.1|WP_146297107.1|3203336_3204911_-|Hsp70-family-protein
MTIIAVDFGTTNTVISYLPPDSETPTTVKLDQLSRVFRLRNQQGEIKEVPVIPSLLFIDSSGQPKVGELVRSRRLGLTQPQRFFKGFKQDLVADFQPPPREIDGDFYPPETVCEQFLTTIWQTLQAENWQPTQAVFTVPVGAFERYRHWFWQLSEKLRIPQLQLVDESTAAALGYAQKRPNALILVIDFGGGTLDLSLVRTAFGTNEQELKGEVIAKADAYVGGSDIDAWIVEDYLKSIGRRREEVDETTWQNLLAIAEQLKIRLSGKEEAKESWLNEETFESYEISLQRNHLEEILEVRQLLDQLREVLDDVISTALRKGIQKNEIEQVLLTGGTSLIHAVQNLVISFFGRKRVQFSNPFEAVSHGALVAASLHKLEDYLRHSYAIRLWDPALQQYQYYQLFEKGTTYPCEGETLILQVAVEGQKEIELDIGELAEVSQAGEVSYDAQGRMTAGNINHQLRFSSLAENREQVCVAHLDPVGKVGRDRAAVTFAINERRILVATVTDLLTQQVLVDHQEVVKLR
>NZ_CP042326.1|WP_146297106.1|3202278_3202881_-|superoxide-dismutase
MAYELPALPYDYTALEPAISKQTLEFHHDKHHAGYVKKFNAAVEGTEFDRKPIEDVIKAIAGDDSKTPIFNAGAQAWNHTFYWNSMKPNGGGEPSGELADKIKSDFGSLDKFKEEFKNAGTGQFGSGWAWLVLDNGTLKVTKTLNADNPLTAGQTPLLTMDVWEHAYYLDYQNLRGSYIDAFLDQLINWDFAAKNLAKAK
>NZ_CP042326.1|WP_146297401.1|3201972_3202182_-|hypothetical-protein
MLEPHYPQKVLSFDYRGFDIKITIDETDDEITYAAWIGYDYGWAMATPAAKSRSEAIQKAKQWTDTKLG
>NZ_CP042326.1|WP_146297105.1|3201566_3201986_+|hypothetical-protein
MRQFPWFSFSLLFLACTVFGWVVSTTTEAIPVLILLGSFLLLIDMGLTAPITIIELLFGSWLASDKRAFLTVLVLAFSFAVFLTWINIFARLLVLLAAGTLFRLDLQRTTFKRWQALTILLLTCASGYIGGVLIHTILA
>NZ_CP042326.1|WP_146297104.1|3201004_3201490_+|allophycocyanin
MSVVSQVILKADDQLRYPTSGELKGIEEYLKTGEQRMQIAQTLAENEKKIVDQASKELWKLHPEYIAPGGNAFGSRERSLCLRDYGWYLRLITYGVIAGDKQPIESIGLVGVREMYNALDVPVPGMADAIRCLKDASLALLSEEEAQEAAPYFDYIIQAMS
>NZ_CP042326.1|WP_146297114.1|3211354_3212602_+|hypothetical-protein
MTENKKPKETDAVLGGQTTPKRGAVLGGIEGLKQRLKNSNQQERVIALQQAVQYGQEGLKVVAEATFVEKLELVKADQTPPEILQQLAQDEYWLVRSGVGSNPNTPLELLQQLARDKNSDVRKKVGSNPNTSLELLQQLARDKDERVSRVAIESLVKVGSNPNLPLELLQQLARDKDERVSRVAIESLVKVGSNPNLPLELLQQLARDGNGWVHSRVAKNPNTPLELLQQLAQDEDCGVRLGVASNPNTPPEILQQLTQDEDFRVRINVGSNPNTSPEILQILARDEDGRVRSEVASNPNTSSEILRLLARDNNVRDKVASNPNTSSEILQQLARDKYFSVRWKVASNPNTPIEILQQLARDEILWVRQEVAFNPNTSPKILRKLARDEYWEVRDVANKSIKKRNLNSIFHFLPF
>NZ_CP042326.1|WP_146297115.1|3212735_3213023_+|hypothetical-protein
MATDTDFAQILERLEGRFDSLEGRFDSLESKFDTQNEKLQSIDSRLARVEEKTNNLSDQFNRQEGRVWNLLVTLSVALITGLLGLIGKLLLFPTA
>NZ_CP042326.1|WP_146297116.1|3213169_3213400_+|hypothetical-protein
MIPLLEKAINQLKQLPKTEQTRIASLILDNLNANKNTTTIKDSDYKLSEVLLLPELEEGEEEIFTRNQDTGRNITL
>NZ_CP042326.1|WP_146297117.1|3213396_3213831_+|PIN-domain-containing-protein
MNYLLDTCVLSEYVKKQPNTVVINWLDQQREEHLLISILSIGELKKGIIKLEKSQPVRSQRLWEWVERIGVRFEGRILTINQSVIDRWARLCGELEAKGTKLAVMDSLIAATALVYDLAVVTRNVNDFSATTVKIFNPWKLKNK
>NZ_CP042326.1|WP_146297118.1|3214627_3216307_+|GH3-auxin-responsive-promoter-family-protein
MANLPFQILTTLGHRAKNELIEQTKHPLATQEKYLKTLLQHHQKTELGRHYHLEEIKTIDQFRSRIPILPYSAYDPYTQRIAQGEKNVLTPDPVIYINITSGSTGKQKKIPVTQRFQNSLGKANLASMGFLDTALRQRGKKLEKLLVTNPALIRGYTEGGLKYGPAGPGVLHTRKWLYEWLFAHPFTTLQVADSFTRTYLCLLFSLRNEELGGLIANFPMLILRICHYLEKYAESFIQDLERGTLPKDLDLDSKMRSRLNRRFSASPKRARELREILNTEGRLTPPLAWKNLAYITTARGGTSDFYLQHFSDYDLDHLPVFGGAFASAEGTFSVYTDVNNDASALAVNTGFFEFIPESEWDQENPQTLLATEVKPGERYRILVSNYSGFYRYDIGDVVEIGDFFEQSPTLIFRHRRGGILSSTSEKTTEAHVIAVLRSLQEEWGMTIHDFFVTLSEKEFPPHYLLNIELPPESKLEESSHFLRRFDELLKETNPHYALKREGEVPPPRLRILAPGSFDIVRERLIDRGVPDSQMKLPHISEDRQLFKGLTVQQEITLET
>NZ_CP042326.1|WP_146297119.1|3216308_3217505_-|threonine-synthase
MWNRFSLRCDGCGYSVPKEKLTQFSTVKVNSQCPNPNCNQYLLNVHYDLGSDHFLNWKNQLLQRPGSLWRYWELLPLVNWDMAVTFGEGWTPLIPLKRFGSKIGLSNVYLKDERQGPTATFKDRQATVAISFLKEQGINDLVLASTGNVAIAYSAYAARAGIQVYAFFPQGVSPTKIKEASLYGAKVMAVEGTYDQAKAMAAQFAKNQGIFLDQGIKTFAGVESMKTMGFEIAEQLGWCSPDWYIQGVSGGMGPVGVAKGFKELKALGLVDKIPALGLVQSAGCAPIANSFHGGEQNVSVVNSPETAIATLATGNPGIAYHLLKQHLDTHGGNCATVTDAEAWAMVQQLATSEGLLVEPATAVTFMGVVKLAEKGIISPEETVVINCSGREKDITTVT
>NZ_CP042326.1|WP_146297120.1|3217843_3218323_+|fatty-acid-hydroxylase-family-protein
MVALIFFISAFILASLVEYWIHRLMHSSEKLGERHRDHHRRNEGQGVLWEFLDYLKGTLVIMLIPFFFSLEAGIGWMLGGIAYAAFSAYAHQLQHDNPRRCFWMKMPVHYVHHKYGMWYHNFGLGVDWWDHVFGTYKLVDWVTEEELSQQAGYFTLKWW
>NZ_CP042326.1|WP_146297403.1|3218416_3218731_+|DUF962-domain-containing-protein
MTYFQQAKESFIAGHQHPINQALHHMANLLVFIGIGLLFVDWRLTLICGILTQIFAIGGHILFEKNEPAFKQYPGIVILVSISWSLGNWFGLRQLFQQTKQQSN
>NZ_CP042326.1|WP_146297121.1|3218772_3220164_+|amidohydrolase-family-protein
MYNGLLVIDADAHKLENPLIMRDYLEAEYRDRIGLVVDSLGDQRARVVDWNPQTKENDLVRMFPKPQGLGKGGFRTLHPETTLGAMFNKIRLEHMDQEGIDIHAIYGSLNLIFSSILDKDLAIALCKAYNNYMADDCKGYNNRLQPIGVISLQDVDEAVKEMYRCVNELGMISVAVAPNLPIPHPKAPDAFPEVRTCKAISHPDFRPILQAAVDLDIGLGIHGGPGSDMVGGIADHMETFILHHIFVQRNQQQLALARMVFDGAFEEFPNLRVGFLEGGCGWIPDLAHAFHEHWEKRIRDFDPKNPYRPSLMDFTKLMVQERGGENNVNIISQARNLFDLLWNKQTDPSKIEDDSLYEHYHLRDRDPLDYFKRGQIFASFESDDPGPSYLPQAMGEMGKQIACFSGDYGHWDGVLKDCVSDAANIADYDRDYLGRLLGGNALKFYGQRLRNVIPENLAVAATY
>NZ_CP042326.1|WP_146297122.1|3220241_3221024_+|alpha/beta-fold-hydrolase
MEIKYCQHPDGTQIAYRHHPASSEQNHQPGLLFLPGYGSDMEGTKATTIFSWAKQQGVQATLMDYGGHGNSSGEFREGTLGQWTNHARYILETITSGPQILIGSSMGGWIMMLLALQYPQRISGLMGIATAIDFISELVLPNLSEQQKEALKVKGETILDYSGLPLTQRYVEEAVSHNLLKNKHLHDLTCPVTLIHGLQDSVIPWRWSCQLQQELGSDEVTLVVIKQGNHRLSDPQSLDLLVDNLARLWKRASTPFPDSL

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Crispr_ID: NZ_CP042326_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042326_8

3208232-3208454

Orphan

Consensus_repeat	Method
CGCCTCTAACCCCAACACTCCCCCTGAAATTCTCCAACAACTGGCTC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP042326_8

>merge|NZ_CP042326|8|3208232-3208454|PILER-CR
ACTCCCCCTGAAATTCTGGCATTGCTTGATCAAGATCCGATTTTTAGATTAAAAAAACGCTCGGAAGATTCTAATTGGAATGTACGCTCTAAAGTCGCCTCTAACCCCAACACTCCCCCTGAAATTCTCCAACAACTGGCTCGGGATGAAAATACTAATGTACGCTCTAAAGTCGCCTCTAACCCCAATACTCCCCCTGAAAATCTCCAACAACTGGCTCAGG

>NZ_CP042326|8|5|3208232-3208454|PILER-CR
ACTCCCCCTGAAATTCTGGCATTGCTTGATCAAGATCCGATTTTTAGATT	AAAAAAACGCTCGGAAGATTCTAATTGGAATGTACGCTCTAAAGTCGCCTCTAACCCCAACACTCCCCCTGAAATTCT
CCAACAACTGGCTCGGGATGAAAATACTAATGTACGCTCTAAAGTCGCCT	CTAACCCCAATACTCCCCCTGAAAATCTCCA
ACAACTGGCTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042326.1\|WP_146297114.1\|3211354_3212602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP042326.1\|WP_146297117.1\|3213396_3213831_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350313
NZ_CP042326.1\|WP_146297116.1\|3213169_3213400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146297121.1\|3218772_3220164_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225070
NZ_CP042326.1\|WP_146297105.1\|3201566_3201986_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146297107.1\|3203336_3204911_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212667
NZ_CP042326.1\|WP_146297118.1\|3214627_3216307_+\|GH3-auxin-responsive-promoter-family-protein	unknown	unknown	gnl\|CDD\|377019
NZ_CP042326.1\|WP_146297109.1\|3205453_3205672_-\|DUF2997-domain-containing-protein	unknown	unknown	gnl\|CDD\|314207
NZ_CP042326.1\|WP_146297113.1\|3209281_3211219_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP042326.1\|WP_146297115.1\|3212735_3213023_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371241
NZ_CP042326.1\|WP_146297108.1\|3204918_3205461_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NZ_CP042326.1\|WP_146297111.1\|3207546_3207921_+\|DUF1257-domain-containing-protein	unknown	unknown	gnl\|CDD\|377725
NZ_CP042326.1\|WP_146297106.1\|3202278_3202881_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP042326.1\|WP_146297403.1\|3218416_3218731_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|377609
NZ_CP042326.1\|WP_146297104.1\|3201004_3201490_+\|allophycocyanin	unknown	unknown	gnl\|CDD\|381265
NZ_CP042326.1\|WP_146297119.1\|3216308_3217505_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|107206
NZ_CP042326.1\|WP_146297110.1\|3205886_3207515_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NZ_CP042326.1\|WP_146297401.1\|3201972_3202182_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042326.1\|WP_146297120.1\|3217843_3218323_+\|fatty-acid-hydroxylase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP042326.1\|WP_146297399.1\|3197842_3198502_-\|DUF1524-domain-containing-protein	unknown	unknown	gnl\|CDD\|377857

Protein	Function_ID	Function_description	E-value
NZ_CP042326.1\|WP_146297114.1\|3211354_3212602_+\|hypothetical-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	7.6253e-09
NZ_CP042326.1\|WP_146297117.1\|3213396_3213831_+\|PIN-domain-containing-protein	gnl\|CDD\|350313	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.60941e-59
NZ_CP042326.1\|WP_146297121.1\|3218772_3220164_+\|amidohydrolase-family-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	6.26792e-10
NZ_CP042326.1\|WP_146297107.1\|3203336_3204911_-\|Hsp70-family-protein	gnl\|CDD\|212667	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family. HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.	7.56272e-74
NZ_CP042326.1\|WP_146297118.1\|3214627_3216307_+\|GH3-auxin-responsive-promoter-family-protein	gnl\|CDD\|377019	pfam03321, GH3, GH3 auxin-responsive promoter.	2.27969e-168
NZ_CP042326.1\|WP_146297109.1\|3205453_3205672_-\|DUF2997-domain-containing-protein	gnl\|CDD\|314207	pfam11211, DUF2997, Protein of unknown function (DUF2997). This family of proteins has no known function.	3.52545e-16
NZ_CP042326.1\|WP_146297113.1\|3209281_3211219_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	0.00155333
NZ_CP042326.1\|WP_146297115.1\|3212735_3213023_+\|hypothetical-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	0.00140909
NZ_CP042326.1\|WP_146297108.1\|3204918_3205461_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	1.98681e-07
NZ_CP042326.1\|WP_146297111.1\|3207546_3207921_+\|DUF1257-domain-containing-protein	gnl\|CDD\|377725	pfam06868, DUF1257, Protein of unknown function (DUF1257). This family contains hypothetical proteins of unknown function that are approximately 120 residues long. Family members include eukaryotic and bacterial proteins.	3.47228e-44
NZ_CP042326.1\|WP_146297106.1\|3202278_3202881_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.05039e-101
NZ_CP042326.1\|WP_146297403.1\|3218416_3218731_+\|DUF962-domain-containing-protein	gnl\|CDD\|377609	pfam06127, DUF962, Protein of unknown function (DUF962). This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein YGL010W has been found to be non-essential for cell growth.	1.66319e-06
NZ_CP042326.1\|WP_146297104.1\|3201004_3201490_+\|allophycocyanin	gnl\|CDD\|381265	cd12125, APC_alpha, Allophycocyanin alpha subunit of the phycobilisome core. Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	2.37862e-100
NZ_CP042326.1\|WP_146297119.1\|3216308_3217505_-\|threonine-synthase	gnl\|CDD\|107206	cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.	5.11225e-101
NZ_CP042326.1\|WP_146297110.1\|3205886_3207515_+\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	0
NZ_CP042326.1\|WP_146297399.1\|3197842_3198502_-\|DUF1524-domain-containing-protein	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	3.62028e-22
NZ_CP042326.1\|WP_146297120.1\|3217843_3218323_+\|fatty-acid-hydroxylase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	2.39509e-06

>NZ_CP042326.1|WP_146297111.1|3207546_3207921_+|DUF1257-domain-containing-protein
MSHFSTIKIQIKNGDILQQILTELGYQVETNAQVRGYQGNRTNADYVIRQNNGYDLGFRNNQGNYELVADFWGASINEKEFLNQINQKYAHRTLMETVEEEGFDVEEEEVLEDGTVKVVVGKWV
>NZ_CP042326.1|WP_146297110.1|3205886_3207515_+|AAA-family-ATPase
MTARPTSKDAVLSPQHPHQETIAQLDLMLRSRYPLIYLVATEEEPIEEVLEQVSHNSQPQRQVIYWDIVRGWSDNHKDKASIIGALSRVHTTKEDQGTLFVFRDLHGILKNPEADKNAPIIRELKNLTRELKTSRKTILLLSHRLEIPPELSEEITVLDFPLPNLKEIDYLVSQLVTPDKLKLEGLGKEQFLKACQGLSRAKIRRVLAKALAAKQEINETDIDVVLEEKRQTIRQTGILEFSPAPDSLKSVGGLENLKEWVRMRKDAFSDEAKRYGIPTPKGLLLVGIQGTGKSLSAKTIAHEWRVPLLRLDTGRLFGGIVGESESRVRQMIQLAEAMSPCILWIDEIDKAFGSISSGVSGDSGTSERVFGSLITWMQEKTQPVFIVATANNVQVLPAELLRKGRFDETFFINLPTEKERKAIFRVHLQQIRGSRLQEFNLDLLAQSSENFSGAEIQQAIIDAMHLAFGDGESGKRRDFTTEDILAALEETVPLSAIAHQQIEALKKWAAEAGARTASKDDDLLQELRNYQSSTGINPIQVD
>NZ_CP042326.1|WP_146297109.1|3205453_3205672_-|DUF2997-domain-containing-protein
MAEYQRVEYRIGKDGKITEQVIGASGESCKETTSDIESALGEVESQELLPEYYEGEENLANQETQFLQQGNE
>NZ_CP042326.1|WP_146297108.1|3204918_3205461_-|nucleotide-exchange-factor-GrpE
MSSEQELFWSSWLFLLAAIIGILWLQDQWSKPTENSKASPSTSPDTEDFKEECQRLRKQLETQRETVKEEIQQVTFEQLQSLLTQFPSARKMAEAKPNLPASNFSALFTPLENLLEEWEITPIGEVWQQVEFDPQSHQADSEEIEVGEKVYVRFVGYRQGEKILVPAKVSRTLPAGVVES
>NZ_CP042326.1|WP_146297107.1|3203336_3204911_-|Hsp70-family-protein
MTIIAVDFGTTNTVISYLPPDSETPTTVKLDQLSRVFRLRNQQGEIKEVPVIPSLLFIDSSGQPKVGELVRSRRLGLTQPQRFFKGFKQDLVADFQPPPREIDGDFYPPETVCEQFLTTIWQTLQAENWQPTQAVFTVPVGAFERYRHWFWQLSEKLRIPQLQLVDESTAAALGYAQKRPNALILVIDFGGGTLDLSLVRTAFGTNEQELKGEVIAKADAYVGGSDIDAWIVEDYLKSIGRRREEVDETTWQNLLAIAEQLKIRLSGKEEAKESWLNEETFESYEISLQRNHLEEILEVRQLLDQLREVLDDVISTALRKGIQKNEIEQVLLTGGTSLIHAVQNLVISFFGRKRVQFSNPFEAVSHGALVAASLHKLEDYLRHSYAIRLWDPALQQYQYYQLFEKGTTYPCEGETLILQVAVEGQKEIELDIGELAEVSQAGEVSYDAQGRMTAGNINHQLRFSSLAENREQVCVAHLDPVGKVGRDRAAVTFAINERRILVATVTDLLTQQVLVDHQEVVKLR
>NZ_CP042326.1|WP_146297106.1|3202278_3202881_-|superoxide-dismutase
MAYELPALPYDYTALEPAISKQTLEFHHDKHHAGYVKKFNAAVEGTEFDRKPIEDVIKAIAGDDSKTPIFNAGAQAWNHTFYWNSMKPNGGGEPSGELADKIKSDFGSLDKFKEEFKNAGTGQFGSGWAWLVLDNGTLKVTKTLNADNPLTAGQTPLLTMDVWEHAYYLDYQNLRGSYIDAFLDQLINWDFAAKNLAKAK
>NZ_CP042326.1|WP_146297401.1|3201972_3202182_-|hypothetical-protein
MLEPHYPQKVLSFDYRGFDIKITIDETDDEITYAAWIGYDYGWAMATPAAKSRSEAIQKAKQWTDTKLG
>NZ_CP042326.1|WP_146297105.1|3201566_3201986_+|hypothetical-protein
MRQFPWFSFSLLFLACTVFGWVVSTTTEAIPVLILLGSFLLLIDMGLTAPITIIELLFGSWLASDKRAFLTVLVLAFSFAVFLTWINIFARLLVLLAAGTLFRLDLQRTTFKRWQALTILLLTCASGYIGGVLIHTILA
>NZ_CP042326.1|WP_146297104.1|3201004_3201490_+|allophycocyanin
MSVVSQVILKADDQLRYPTSGELKGIEEYLKTGEQRMQIAQTLAENEKKIVDQASKELWKLHPEYIAPGGNAFGSRERSLCLRDYGWYLRLITYGVIAGDKQPIESIGLVGVREMYNALDVPVPGMADAIRCLKDASLALLSEEEAQEAAPYFDYIIQAMS
>NZ_CP042326.1|WP_146297399.1|3197842_3198502_-|DUF1524-domain-containing-protein
MFLLNIYDQYEDNKISLDKFLKILQYLESYFVRRLFVSITTKNLGSIFTKLYSQIKNYDDIVEGLHITLSEFEGNKRWPDDEEFRKHFVKFNLYNQNQRDRTKLILESLESWNNKEEVNPNNLTIEHIMPQKLNKPWEKMLGNNYDSIHKKCLHTVGNLTLTAYNSELSDKAFQDKKELLIRSNISLNRYFQNVSVWNEQEIQRRAHNLADKAVKIWPR
>NZ_CP042326.1|WP_146297113.1|3209281_3211219_+|HEAT-repeat-domain-containing-protein
MTENKKPKETDAVLGGQTTAPKRGAVLGGIEGLKQRLENSDPQERVIALQKAVQYGEEGLKLVAEATFGDKLELEQADQTPPEILALLDQDPVFRLKKRSENSNWKVRNEVASNPNTPLEILQQLAQDQDMELRGEVASHRNTPPEILQQLAQDEGVVVRREVASHRNTPPEILQQLAQDEGVVVRREVAFNPNTPPEILRQLARDEDWDVRKGIASNPNTPLEFLQQLAQSRNGDDVRQRDVVASNPNTPPEVLQQLARDEELVRSRVAQNPNTPLELLQQLARDESKGIRRGVASNPNTPPETLQQLARDEHKDVRREVASNPNFPLELLQQLARDEDVSLRIGVALNPNTPLELLQQLARDEHYGVRSEVALNPNTPLELLQQLARDEHYGVRSEVASNPNTPLGLLQQLARDEDKDVREGVASNPNTPPETLQQLDQDQDPSVRTKVASNPNTPLELLQQLARDEDVLVRYELASNPNIPPELLQQLLKEIILKPLYDEVPSHCNTPPEVLQQLARDKHGKVRYKVASHRNTLPEILQQLARDEDRLVRSGVASNPNLSLELLQQLARDEDWSVRKGVASNPNTPPEVLQELARDEDHRVRFWVPFNRQTPPELLQLLARDEHEWVRREANNSLRKRGFQL
>NZ_CP042326.1|WP_146297114.1|3211354_3212602_+|hypothetical-protein
MTENKKPKETDAVLGGQTTPKRGAVLGGIEGLKQRLKNSNQQERVIALQQAVQYGQEGLKVVAEATFVEKLELVKADQTPPEILQQLAQDEYWLVRSGVGSNPNTPLELLQQLARDKNSDVRKKVGSNPNTSLELLQQLARDKDERVSRVAIESLVKVGSNPNLPLELLQQLARDKDERVSRVAIESLVKVGSNPNLPLELLQQLARDGNGWVHSRVAKNPNTPLELLQQLAQDEDCGVRLGVASNPNTPPEILQQLTQDEDFRVRINVGSNPNTSPEILQILARDEDGRVRSEVASNPNTSSEILRLLARDNNVRDKVASNPNTSSEILQQLARDKYFSVRWKVASNPNTPIEILQQLARDEILWVRQEVAFNPNTSPKILRKLARDEYWEVRDVANKSIKKRNLNSIFHFLPF
>NZ_CP042326.1|WP_146297115.1|3212735_3213023_+|hypothetical-protein
MATDTDFAQILERLEGRFDSLEGRFDSLESKFDTQNEKLQSIDSRLARVEEKTNNLSDQFNRQEGRVWNLLVTLSVALITGLLGLIGKLLLFPTA
>NZ_CP042326.1|WP_146297116.1|3213169_3213400_+|hypothetical-protein
MIPLLEKAINQLKQLPKTEQTRIASLILDNLNANKNTTTIKDSDYKLSEVLLLPELEEGEEEIFTRNQDTGRNITL
>NZ_CP042326.1|WP_146297117.1|3213396_3213831_+|PIN-domain-containing-protein
MNYLLDTCVLSEYVKKQPNTVVINWLDQQREEHLLISILSIGELKKGIIKLEKSQPVRSQRLWEWVERIGVRFEGRILTINQSVIDRWARLCGELEAKGTKLAVMDSLIAATALVYDLAVVTRNVNDFSATTVKIFNPWKLKNK
>NZ_CP042326.1|WP_146297118.1|3214627_3216307_+|GH3-auxin-responsive-promoter-family-protein
MANLPFQILTTLGHRAKNELIEQTKHPLATQEKYLKTLLQHHQKTELGRHYHLEEIKTIDQFRSRIPILPYSAYDPYTQRIAQGEKNVLTPDPVIYINITSGSTGKQKKIPVTQRFQNSLGKANLASMGFLDTALRQRGKKLEKLLVTNPALIRGYTEGGLKYGPAGPGVLHTRKWLYEWLFAHPFTTLQVADSFTRTYLCLLFSLRNEELGGLIANFPMLILRICHYLEKYAESFIQDLERGTLPKDLDLDSKMRSRLNRRFSASPKRARELREILNTEGRLTPPLAWKNLAYITTARGGTSDFYLQHFSDYDLDHLPVFGGAFASAEGTFSVYTDVNNDASALAVNTGFFEFIPESEWDQENPQTLLATEVKPGERYRILVSNYSGFYRYDIGDVVEIGDFFEQSPTLIFRHRRGGILSSTSEKTTEAHVIAVLRSLQEEWGMTIHDFFVTLSEKEFPPHYLLNIELPPESKLEESSHFLRRFDELLKETNPHYALKREGEVPPPRLRILAPGSFDIVRERLIDRGVPDSQMKLPHISEDRQLFKGLTVQQEITLET
>NZ_CP042326.1|WP_146297119.1|3216308_3217505_-|threonine-synthase
MWNRFSLRCDGCGYSVPKEKLTQFSTVKVNSQCPNPNCNQYLLNVHYDLGSDHFLNWKNQLLQRPGSLWRYWELLPLVNWDMAVTFGEGWTPLIPLKRFGSKIGLSNVYLKDERQGPTATFKDRQATVAISFLKEQGINDLVLASTGNVAIAYSAYAARAGIQVYAFFPQGVSPTKIKEASLYGAKVMAVEGTYDQAKAMAAQFAKNQGIFLDQGIKTFAGVESMKTMGFEIAEQLGWCSPDWYIQGVSGGMGPVGVAKGFKELKALGLVDKIPALGLVQSAGCAPIANSFHGGEQNVSVVNSPETAIATLATGNPGIAYHLLKQHLDTHGGNCATVTDAEAWAMVQQLATSEGLLVEPATAVTFMGVVKLAEKGIISPEETVVINCSGREKDITTVT
>NZ_CP042326.1|WP_146297120.1|3217843_3218323_+|fatty-acid-hydroxylase-family-protein
MVALIFFISAFILASLVEYWIHRLMHSSEKLGERHRDHHRRNEGQGVLWEFLDYLKGTLVIMLIPFFFSLEAGIGWMLGGIAYAAFSAYAHQLQHDNPRRCFWMKMPVHYVHHKYGMWYHNFGLGVDWWDHVFGTYKLVDWVTEEELSQQAGYFTLKWW
>NZ_CP042326.1|WP_146297403.1|3218416_3218731_+|DUF962-domain-containing-protein
MTYFQQAKESFIAGHQHPINQALHHMANLLVFIGIGLLFVDWRLTLICGILTQIFAIGGHILFEKNEPAFKQYPGIVILVSISWSLGNWFGLRQLFQQTKQQSN
>NZ_CP042326.1|WP_146297121.1|3218772_3220164_+|amidohydrolase-family-protein
MYNGLLVIDADAHKLENPLIMRDYLEAEYRDRIGLVVDSLGDQRARVVDWNPQTKENDLVRMFPKPQGLGKGGFRTLHPETTLGAMFNKIRLEHMDQEGIDIHAIYGSLNLIFSSILDKDLAIALCKAYNNYMADDCKGYNNRLQPIGVISLQDVDEAVKEMYRCVNELGMISVAVAPNLPIPHPKAPDAFPEVRTCKAISHPDFRPILQAAVDLDIGLGIHGGPGSDMVGGIADHMETFILHHIFVQRNQQQLALARMVFDGAFEEFPNLRVGFLEGGCGWIPDLAHAFHEHWEKRIRDFDPKNPYRPSLMDFTKLMVQERGGENNVNIISQARNLFDLLWNKQTDPSKIEDDSLYEHYHLRDRDPLDYFKRGQIFASFESDDPGPSYLPQAMGEMGKQIACFSGDYGHWDGVLKDCVSDAANIADYDRDYLGRLLGGNALKFYGQRLRNVIPENLAVAATY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042326_1	1.1\|235935\|49\|NZ_CP042326\|CRISPRCasFinder	235935-235983	49	NZ_CP042326.1	235971-236019	2	0.959
NZ_CP042326_2	2.1\|244933\|32\|NZ_CP042326\|CRISPRCasFinder	244933-244964	32	NZ_CP042326.1	244877-244908	2	0.938

1. spacer 1.1|235935|49|NZ_CP042326|CRISPRCasFinder matches to position: 235971-236019, mismatch: 2, identity: 0.959

gcgctgttcaccaatctcaatcccacgctgttcaccgcgctgttcacca	CRISPR spacer
gcgctgttcaccaatctcaatcccacgctgttcaccacgttgttcacca	Protospacer
************************************.**.*********

2. spacer 2.1|244933|32|NZ_CP042326|CRISPRCasFinder matches to position: 244877-244908, mismatch: 2, identity: 0.938

taccaactctgataacaatagttacactagat	CRISPR spacer
taccaattttgataacaatagttacactagat	Protospacer
******.*.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	MH517022	Acinetobacter phage SH-Ab 15599, complete genome	1301-1332	7	0.781
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	LR588166	Pseudomonas phage vB_PaeM_MIJ3	182613-182644	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	MH121069	Pseudomonas phage vB_PaeM_PA5oct, complete genome	11953-11984	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	MN871480	UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome	71061-71092	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	MT133560	Pseudomonas phage fnug, complete genome	212787-212818	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	DI373487	KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof	95144-95175	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	MN871489	UNVERIFIED: Pseudomonas phage PaZh_1, complete genome	102925-102956	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	NC_042081	Pseudomonas phage SL2, complete genome	73582-73613	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	KU521356	Pseudomonas phage KTN4, complete genome	213339-213370	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	MW057919	Pseudomonas phage vB_PaeM_kmuB, complete genome	212082-212113	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	NC_042060	Pseudomonas phage PA7, partial genome	95144-95175	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	AP019418	Pseudomonas phage PA02 DNA, nearly complete genome	12556-12587	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	NC_004629	Pseudomonas phage phiKZ, complete genome	213392-213423	8	0.75
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	MF360958	Salicola phage SCTP-2, complete genome	330104-330135	9	0.719
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	97551-97582	9	0.719
NZ_CP042326_6	6.2\|1788937\|33\|NZ_CP042326\|CRISPRCasFinder,CRT	1788937-1788969	33	KJ452292	Staphylococcus phage 23MRA, complete genome	33445-33477	9	0.727
NZ_CP042326_6	6.2\|1788937\|33\|NZ_CP042326\|CRISPRCasFinder,CRT	1788937-1788969	33	AY508486	Bacteriophage 77, complete genome	9519-9551	9	0.727
NZ_CP042326_6	6.2\|1788937\|33\|NZ_CP042326\|CRISPRCasFinder,CRT	1788937-1788969	33	NC_005356	Staphylococcus phage 77, complete genome	9519-9551	9	0.727
NZ_CP042326_6	6.2\|1788937\|33\|NZ_CP042326\|CRISPRCasFinder,CRT	1788937-1788969	33	NC_048634	Staphylococcus phage P282, complete genome	9464-9496	9	0.727
NZ_CP042326_6	6.5\|1788938\|33\|NZ_CP042326\|PILER-CR	1788938-1788970	33	KJ452292	Staphylococcus phage 23MRA, complete genome	33445-33477	9	0.727
NZ_CP042326_6	6.5\|1788938\|33\|NZ_CP042326\|PILER-CR	1788938-1788970	33	AY508486	Bacteriophage 77, complete genome	9519-9551	9	0.727
NZ_CP042326_6	6.5\|1788938\|33\|NZ_CP042326\|PILER-CR	1788938-1788970	33	NC_005356	Staphylococcus phage 77, complete genome	9519-9551	9	0.727
NZ_CP042326_6	6.5\|1788938\|33\|NZ_CP042326\|PILER-CR	1788938-1788970	33	NC_048634	Staphylococcus phage P282, complete genome	9464-9496	9	0.727
NZ_CP042326_5	5.1\|708192\|32\|NZ_CP042326\|PILER-CR	708192-708223	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	344680-344711	10	0.688

1. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to MH517022 (Acinetobacter phage SH-Ab 15599, complete genome) position: , mismatch: 7, identity: 0.781

ccaatctttatttccatttttaatgaaatgca	CRISPR spacer
acactctttatttacatttttaatagatttca	Protospacer
 ** ********* **********..* * **

2. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to LR588166 (Pseudomonas phage vB_PaeM_MIJ3) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca	CRISPR spacer
aatttttttatttccatttttaataaaatata	Protospacer
    *.******************.****..*

3. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to MH121069 (Pseudomonas phage vB_PaeM_PA5oct, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca	CRISPR spacer
aatttttttatttccatttttaataaaatata	Protospacer
    *.******************.****..*

4. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to MN871480 (UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

5. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to MT133560 (Pseudomonas phage fnug, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

6. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to DI373487 (KR 1020130142837-A/1: Bacteriophage of Pseudomonas aeruginosa and uses thereof) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

7. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to MN871489 (UNVERIFIED: Pseudomonas phage PaZh_1, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

8. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to NC_042081 (Pseudomonas phage SL2, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

9. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

10. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to MW057919 (Pseudomonas phage vB_PaeM_kmuB, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

11. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to NC_042060 (Pseudomonas phage PA7, partial genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

12. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to AP019418 (Pseudomonas phage PA02 DNA, nearly complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

13. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to NC_004629 (Pseudomonas phage phiKZ, complete genome) position: , mismatch: 8, identity: 0.75

ccaatctttatttccatttttaatgaaatgca-	CRISPR spacer
gtcatctttatatccatttttagtg-attacat	Protospacer
 . ******** **********.** * *.**

14. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 9, identity: 0.719

ccaatctttatttccatttttaatgaaatgca	CRISPR spacer
aaaaactttatttccatttttaatgctaattt	Protospacer
  ** ********************  *  .

15. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 9, identity: 0.719

ccaatctttatttccatttttaatgaaatgca	CRISPR spacer
attttatttttttccattttaaatgaaattcg	Protospacer
 .  * *** ********** ******** *.

16. spacer 6.2|1788937|33|NZ_CP042326|CRISPRCasFinder,CRT matches to KJ452292 (Staphylococcus phage 23MRA, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

17. spacer 6.2|1788937|33|NZ_CP042326|CRISPRCasFinder,CRT matches to AY508486 (Bacteriophage 77, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

18. spacer 6.2|1788937|33|NZ_CP042326|CRISPRCasFinder,CRT matches to NC_005356 (Staphylococcus phage 77, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

19. spacer 6.2|1788937|33|NZ_CP042326|CRISPRCasFinder,CRT matches to NC_048634 (Staphylococcus phage P282, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

20. spacer 6.5|1788938|33|NZ_CP042326|PILER-CR matches to KJ452292 (Staphylococcus phage 23MRA, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

21. spacer 6.5|1788938|33|NZ_CP042326|PILER-CR matches to AY508486 (Bacteriophage 77, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

22. spacer 6.5|1788938|33|NZ_CP042326|PILER-CR matches to NC_005356 (Staphylococcus phage 77, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

23. spacer 6.5|1788938|33|NZ_CP042326|PILER-CR matches to NC_048634 (Staphylococcus phage P282, complete genome) position: , mismatch: 9, identity: 0.727

aaactgaaaaaagctatctcaaattgtggagta	CRISPR spacer
ggtttgaaaaaagctatatcaaattggggtaaa	Protospacer
.. .************* ******** ** . *

24. spacer 5.1|708192|32|NZ_CP042326|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 10, identity: 0.688

ccaatctttatttccatttttaatgaaatgca	CRISPR spacer
aaaatctttatttcaatttttattgtcttaat	Protospacer
  ************ ******* **   *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

124005 : 175701

Cedratvirus(14.29%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146294178.1\|124005_124701_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_146294179.1\|124712_125426_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_146297225.1\|125573_127121_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA
WP_146294180.1\|127150_127771_-	TenA family transcriptional regulator	NA	NA	NA	NA
WP_146294181.1\|128182_128713_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_146294182.1\|128755_130105_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_146294183.1\|130123_131407_-	FAD-binding protein	NA	NA	NA	NA
WP_146294184.1\|131467_132061_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA
WP_146294185.1\|132068_132680_+	alpha-ketoglutarate-dependent dioxygenase AlkB	A0A1M7XU11	Cedratvirus	1.5e-17	34.2
WP_146294186.1\|132764_133052_+	DUF3082 domain-containing protein	NA	NA	NA	NA
WP_146294187.1\|133038_134922_-	hypothetical protein	NA	NA	NA	NA
WP_146294188.1\|135229_136501_+\|transposase	transposase	A0A1L2BWU7	Bacteriophage	1.6e-90	44.8
WP_146294189.1\|136900_139618_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_146294190.1\|139829_140462_+	DUF3038 domain-containing protein	NA	NA	NA	NA
WP_146294191.1\|140458_141463_+	DUF4335 domain-containing protein	NA	NA	NA	NA
WP_146294192.1\|141412_142957_-	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_146294193.1\|143010_143856_+	prephenate/arogenate dehydrogenase	NA	NA	NA	NA
WP_146294194.1\|143952_144168_-	hypothetical protein	NA	NA	NA	NA
WP_146294195.1\|144289_145429_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_146294196.1\|145535_146186_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_146294197.1\|148355_149120_-	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_146294198.1\|149206_150637_-	MFS transporter	NA	NA	NA	NA
WP_146294199.1\|150868_151876_-	sirohydrochlorin chelatase	NA	NA	NA	NA
WP_146297226.1\|151949_153092_-	murein transglycosylase	NA	NA	NA	NA
WP_146294200.1\|153229_153922_-	hypothetical protein	NA	NA	NA	NA
WP_146297227.1\|153918_154323_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_146297228.1\|154779_155115_-	hypothetical protein	NA	NA	NA	NA
WP_146294201.1\|155201_155630_-	MerR family DNA-binding protein	NA	NA	NA	NA
WP_146294202.1\|155646_155928_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_146294203.1\|156043_158794_+	HAD-IC family P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	5.9e-69	28.8
WP_146294204.1\|158836_159952_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.5e-58	40.8
WP_146294205.1\|160179_160731_-	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA
WP_146294206.1\|160868_162920_-	DUF255 domain-containing protein	NA	NA	NA	NA
WP_146294207.1\|163002_163326_-	hypothetical protein	NA	NA	NA	NA
WP_146294208.1\|163605_164889_-	insulinase family protein	A0A2K9L1M6	Tupanvirus	2.1e-29	24.6
WP_146294209.1\|165145_165448_-	hypothetical protein	NA	NA	NA	NA
WP_146294210.1\|165684_167775_-	universal stress protein	NA	NA	NA	NA
WP_146297229.1\|167930_169721_+	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	1.9e-23	42.6
WP_146294211.1\|169721_170510_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_146294212.1\|170517_171462_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_146294213.1\|171477_172557_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_146294214.1\|172624_172990_-	DUF760 domain-containing protein	NA	NA	NA	NA
WP_146294215.1\|173350_174295_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_146294216.1\|174316_175222_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D8KN85	Synechococcus_phage	2.2e-36	36.2
WP_146297230.1\|175221_175701_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_2

955123 : 1003922

Tupanvirus(50.0%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146294856.1\|955123_956134_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_146294195.1\|956162_957302_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_146294857.1\|957402_957741_-	hypothetical protein	NA	NA	NA	NA
WP_146294858.1\|957836_958043_-	hypothetical protein	NA	NA	NA	NA
WP_146294859.1\|958433_958973_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_146294724.1\|959026_960061_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	2.8e-48	32.6
WP_146294860.1\|960261_960471_-	hypothetical protein	NA	NA	NA	NA
WP_146294861.1\|960600_961449_-	AAA family ATPase	NA	NA	NA	NA
WP_146294862.1\|963593_964910_+	phosphorylase kinase	NA	NA	NA	NA
WP_146294863.1\|964966_966367_+	DUF697 domain-containing protein	NA	NA	NA	NA
WP_146294864.1\|966380_967370_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.9e-55	38.4
WP_146294865.1\|967476_968403_+	EamA family transporter	NA	NA	NA	NA
WP_146294866.1\|968382_969288_-	AAA domain-containing protein	NA	NA	NA	NA
WP_146294867.1\|969338_970247_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_146294868.1\|970370_970868_-	DUF427 domain-containing protein	NA	NA	NA	NA
WP_146294869.1\|971181_971922_-\|transposase	transposase	NA	NA	NA	NA
WP_146294870.1\|972286_972643_+	hypothetical protein	NA	NA	NA	NA
WP_146297280.1\|972722_974159_+	LytR family transcriptional regulator	A0A1X9I5X1	Streptococcus_phage	4.0e-08	24.7
WP_146294871.1\|974160_975060_-	acetylglutamate kinase	NA	NA	NA	NA
WP_146294872.1\|975067_975628_-	AAA family ATPase	NA	NA	NA	NA
WP_146294873.1\|975608_976433_-	hypothetical protein	NA	NA	NA	NA
WP_146294874.1\|976562_977120_+	methylmalonic aciduria and homocystinuria type D protein	NA	NA	NA	NA
WP_146294875.1\|977152_977614_+	regulatory protein RecX	NA	NA	NA	NA
WP_146294876.1\|977799_978174_+	DUF4359 domain-containing protein	NA	NA	NA	NA
WP_146294877.1\|978247_979027_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_146294878.1\|979039_979624_-	fibrillin	NA	NA	NA	NA
WP_146294879.1\|979686_980649_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_146294880.1\|980716_981682_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_146294881.1\|981733_982783_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_146294882.1\|982787_983159_+	hypothetical protein	NA	NA	NA	NA
WP_146294883.1\|984307_985321_+	hypothetical protein	NA	NA	NA	NA
WP_146294884.1\|985520_986534_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.3e-42	35.3
WP_146294885.1\|986652_987330_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_146294886.1\|987347_988559_+	amidohydrolase	NA	NA	NA	NA
WP_146294887.1\|988670_990314_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_146294888.1\|990493_991060_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_146294889.1\|991325_992102_+	hypothetical protein	NA	NA	NA	NA
WP_146294890.1\|992640_993009_+	hypothetical protein	NA	NA	NA	NA
WP_146294891.1\|993058_993667_+	type II secretion system protein	NA	NA	NA	NA
WP_146294892.1\|993647_994136_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_146294893.1\|994054_994765_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_146294894.1\|994876_996223_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_146294895.1\|996669_997788_-	metallophosphoesterase	NA	NA	NA	NA
WP_146294896.1\|997830_998541_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146294897.1\|998539_999316_+	hypothetical protein	NA	NA	NA	NA
WP_146294898.1\|999292_999922_-	DUF98 domain-containing protein	NA	NA	NA	NA
WP_146294899.1\|1001256_1001646_+	hypothetical protein	NA	NA	NA	NA
WP_146294900.1\|1001806_1002019_+	DUF2862 domain-containing protein	NA	NA	NA	NA
WP_146294901.1\|1002025_1003126_+	ArsA family ATPase	NA	NA	NA	NA
WP_146294902.1\|1003280_1003922_+\|protease	ATP-dependent protease	NA	NA	NA	NA

DBSCAN-SWA_3

1865254 : 1874816

Bacillus_virus(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146295699.1\|1865254_1866967_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.3e-86	36.7
WP_146295701.1\|1867108_1868716_+	Hsp70 family protein	F2Y2E1	Organic_Lake_phycodnavirus	3.5e-13	22.3
WP_146295703.1\|1868785_1871803_-	exonuclease subunit SbcC	G3MAB6	Bacillus_virus	3.0e-21	34.1
WP_146295704.1\|1871848_1872937_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	3.9e-24	30.3
WP_146295706.1\|1873074_1873611_+	phycobiliprotein lyase	NA	NA	NA	NA
WP_146295708.1\|1873655_1874816_-	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	4.6e-15	27.7

DBSCAN-SWA_4

2569651 : 2617030

Bacillus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146296559.1\|2569651_2570443_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_146296560.1\|2570804_2571944_-	glycosyltransferase	NA	NA	NA	NA
WP_146296561.1\|2571943_2572861_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_146296562.1\|2572908_2573799_-	glycosyltransferase	NA	NA	NA	NA
WP_146296563.1\|2573795_2574887_-	agl cluster protein AglQ	NA	NA	NA	NA
WP_146296564.1\|2575102_2576131_-	hypothetical protein	NA	NA	NA	NA
WP_146294724.1\|2576247_2577282_+\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	2.8e-48	32.6
WP_146297357.1\|2577786_2578041_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_146297358.1\|2578204_2578906_-	hypothetical protein	NA	NA	NA	NA
WP_146296565.1\|2579164_2579494_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_146296566.1\|2579493_2579739_-	hypothetical protein	NA	NA	NA	NA
WP_146296567.1\|2579903_2580737_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.1e-21	52.3
WP_146296568.1\|2580848_2581427_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_146296569.1\|2581443_2581854_-	PIN domain-containing protein	NA	NA	NA	NA
WP_146296570.1\|2581856_2582078_-	hypothetical protein	NA	NA	NA	NA
WP_146296571.1\|2582632_2584504_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.8e-45	29.4
WP_146296572.1\|2584734_2585196_-	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_146296573.1\|2585182_2585410_-	UPF0175 family protein	NA	NA	NA	NA
WP_146296574.1\|2585569_2586304_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_146296575.1\|2586752_2587184_-	DUF29 family protein	NA	NA	NA	NA
WP_146296576.1\|2587408_2588158_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_146296577.1\|2588240_2589689_+	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA	NA	NA	NA
WP_146296578.1\|2589694_2592154_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_146294195.1\|2592432_2593572_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_146296579.1\|2593824_2594040_-	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_146296580.1\|2594518_2594866_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_146296581.1\|2594852_2595071_-	hypothetical protein	NA	NA	NA	NA
WP_146296582.1\|2595321_2595885_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_146296583.1\|2598129_2598387_+	hypothetical protein	NA	NA	NA	NA
WP_146296584.1\|2598367_2598799_+	PIN domain-containing protein	NA	NA	NA	NA
WP_146296585.1\|2599042_2599528_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_146297359.1\|2599517_2599718_+	hypothetical protein	NA	NA	NA	NA
WP_146294359.1\|2600038_2600500_+	hypothetical protein	NA	NA	NA	NA
WP_146295249.1\|2600433_2601240_+	hypothetical protein	NA	NA	NA	NA
WP_146296586.1\|2601294_2601783_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_146297360.1\|2601930_2602371_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_146294359.1\|2602972_2603434_+	hypothetical protein	NA	NA	NA	NA
WP_146295249.1\|2603367_2604174_+	hypothetical protein	NA	NA	NA	NA
WP_146296587.1\|2604242_2604815_+	hypothetical protein	NA	NA	NA	NA
WP_146296588.1\|2605106_2606315_-	phosphotransferase	NA	NA	NA	NA
WP_146296589.1\|2606563_2607778_-	phosphotransferase	NA	NA	NA	NA
WP_146296590.1\|2607880_2608126_-	hypothetical protein	NA	NA	NA	NA
WP_146296591.1\|2608122_2608449_-	hypothetical protein	NA	NA	NA	NA
WP_146296592.1\|2608432_2608657_-	hypothetical protein	NA	NA	NA	NA
WP_146297361.1\|2609016_2609226_-	transferase hexapeptide repeat containing protein	NA	NA	NA	NA
WP_146296593.1\|2609259_2609484_-	hypothetical protein	NA	NA	NA	NA
WP_146296594.1\|2609591_2609855_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	A0A1S5SB46	Streptococcus_phage	8.0e-08	33.7
WP_146296595.1\|2609854_2610070_-	hypothetical protein	NA	NA	NA	NA
WP_146296596.1\|2610726_2610930_+	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_146296597.1\|2611130_2611619_-	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_146296598.1\|2611609_2611864_-	UPF0175 family protein	NA	NA	NA	NA
WP_146296599.1\|2612092_2613103_+\|transposase	transposase	A0A1L2BWN4	Bacteriophage	1.4e-71	53.3
WP_146297260.1\|2615710_2617030_+\|transposase	IS701 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3116227 : 3166177

Ralstonia_phage(16.67%)

holin,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146297033.1\|3116227_3116578_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_146297034.1\|3116924_3117590_+	nitroreductase family protein	NA	NA	NA	NA
WP_146297035.1\|3117593_3117971_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_146297036.1\|3119774_3120395_+	DUF1997 domain-containing protein	NA	NA	NA	NA
WP_146297037.1\|3120472_3121840_+	DUF697 domain-containing protein	NA	NA	NA	NA
WP_146294195.1\|3122283_3123423_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_146297038.1\|3123574_3124639_+\|transposase	transposase	NA	NA	NA	NA
WP_146297039.1\|3124619_3125108_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146297040.1\|3125344_3125920_-\|transposase	transposase	NA	NA	NA	NA
WP_146297041.1\|3126316_3128320_-	NAD-dependent DNA ligase LigA	A0A0A8J9A9	Ralstonia_phage	3.0e-115	37.8
WP_146297042.1\|3128328_3129276_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_146297043.1\|3129287_3129938_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_146297044.1\|3130016_3130457_+	DUF3119 family protein	NA	NA	NA	NA
WP_146297045.1\|3130491_3131565_+	DUF3086 domain-containing protein	NA	NA	NA	NA
WP_146297046.1\|3131867_3132866_-	patatin family protein	NA	NA	NA	NA
WP_146297047.1\|3132979_3133834_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_146297048.1\|3133858_3134503_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_146297389.1\|3134540_3135626_-	hypothetical protein	NA	NA	NA	NA
WP_146297049.1\|3135871_3136963_+	AAA family ATPase	NA	NA	NA	NA
WP_146297050.1\|3136968_3138195_+	(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_146297051.1\|3138197_3139463_-	hypothetical protein	NA	NA	NA	NA
WP_146297052.1\|3139633_3141250_+	MFS transporter	NA	NA	NA	NA
WP_146297053.1\|3141428_3144923_-	GAF domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.3e-08	64.7
WP_146297054.1\|3144953_3145814_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_146297055.1\|3146151_3147477_+	response regulator	NA	NA	NA	NA
WP_146297391.1\|3147487_3148972_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_146297056.1\|3149103_3150822_+	urease subunit alpha	NA	NA	NA	NA
WP_146297057.1\|3150895_3151357_-	hypothetical protein	NA	NA	NA	NA
WP_146297393.1\|3152406_3153729_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_146297058.1\|3153902_3154652_+	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-19	32.8
WP_146297059.1\|3154903_3156601_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_146297060.1\|3156611_3157397_-	hypothetical protein	NA	NA	NA	NA
WP_146297061.1\|3157448_3158600_+	DNA polymerase III subunit beta	A0A1L2BX73	Bacteriophage	1.7e-46	32.1
WP_146297062.1\|3158604_3159255_+	hypothetical protein	NA	NA	NA	NA
WP_146297063.1\|3159321_3159573_+	hypothetical protein	NA	NA	NA	NA
WP_146297064.1\|3159630_3160098_-	Hsp20 family protein	NA	NA	NA	NA
WP_146297065.1\|3160194_3160446_-	hypothetical protein	NA	NA	NA	NA
WP_146297066.1\|3160588_3161218_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.5e-39	46.4
WP_146297067.1\|3161254_3161719_+	DUF1768 domain-containing protein	A0A1X7QH77	Faustovirus	5.5e-28	45.4
WP_146297068.1\|3161869_3162490_-	cyanoexosortase A system-associated protein	NA	NA	NA	NA
WP_146297069.1\|3162514_3162751_-	hypothetical protein	NA	NA	NA	NA
WP_146297070.1\|3162770_3163862_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_146297071.1\|3164181_3164394_+	hypothetical protein	NA	NA	NA	NA
WP_146297072.1\|3164449_3164710_+	BrnT family toxin	NA	NA	NA	NA
WP_146297073.1\|3164699_3164921_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_146297074.1\|3165085_3166177_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP042327

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042327_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042327_1

39246-39889

TypeIII

Consensus_repeat	Method
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	PILER-CR
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CRISPRCasFinder
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CRT

8 spacers

cas2,cas1,csx1,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,WYL

The CRISPR arrays of NZ_CP042327_1

>merge|NZ_CP042327|1|39246-39889|PILER-CR,CRISPRCasFinder,CRT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACCCGTAGGACAAGGGTTGAGGTATGTATAGGTTAGGATGGGGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACCTGAATGTACATATTGGTCTCCTTTGATTATTAATGGTCAACTAGGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACCCCCGTGCTAGAAGTCGGTTTAACTGGGACTCAGACAGGAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTTGACTTTAGGTTTATCCCCTTGAAAGACGTTGATAAAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACAAATGTCAGACATAGTGTCCTCCGATTGAATTCATCAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTTGTGCTTGCATTTTAAGTGACCTCGAATTCGTCACTTAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTGGTAAATGGAAAGATAATAACACTTCTCTAAAGAAGAAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTAGAGGGACACTACATAGGAGGAATTAAAACTTGAGAGAGTTGTCGCTTCCCTACGGGGAAGTGGAATTAAAAAAACC

>NZ_CP042327|1|1|39246-39811|PILER-CR
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCGTAGGACAAGGGTTGAGGTATGTATAGGTTAGGATGGG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTGAATGTACATATTGGTCTCCTTTGATTATTAATGGTCAACTAG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCCCGTGCTAGAAGTCGGTTTAACTGGGACTCAGACAGGA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTGACTTTAGGTTTATCCCCTTGAAAGACGTTGATAAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AAATGTCAGACATAGTGTCCTCCGATTGAATTCATCA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTGTGCTTGCATTTTAAGTGACCTCGAATTCGTCACTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TGGTAAATGGAAAGATAATAACACTTCTCTAAAGAAGAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC

>NZ_CP042327|1|1|39246-39889|CRISPRCasFinder
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCGTAGGACAAGGGTTGAGGTATGTATAGGTTAGGATGGG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTGAATGTACATATTGGTCTCCTTTGATTATTAATGGTCAACTAG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCCCGTGCTAGAAGTCGGTTTAACTGGGACTCAGACAGGA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTGACTTTAGGTTTATCCCCTTGAAAGACGTTGATAAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AAATGTCAGACATAGTGTCCTCCGATTGAATTCATCA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTGTGCTTGCATTTTAAGTGACCTCGAATTCGTCACTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TGGTAAATGGAAAGATAATAACACTTCTCTAAAGAAGAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TAGAGGGACACTACATAGGAGGAATTAAAACTTGAGAGAGTT
GTCGCTTCCCTACGGGGAAGTGGAATTAAAAAAACC

>NZ_CP042327|1|1|39246-39889|CRT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCGTAGGACAAGGGTTGAGGTATGTATAGGTTAGGATGGG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTGAATGTACATATTGGTCTCCTTTGATTATTAATGGTCAACTAG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCCCGTGCTAGAAGTCGGTTTAACTGGGACTCAGACAGGA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTGACTTTAGGTTTATCCCCTTGAAAGACGTTGATAAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AAATGTCAGACATAGTGTCCTCCGATTGAATTCATCA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTGTGCTTGCATTTTAAGTGACCTCGAATTCGTCACTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TGGTAAATGGAAAGATAATAACACTTCTCTAAAGAAGAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TAGAGGGACACTACATAGGAGGAATTAAAACTTGAGAGAGTT
GTCGCTTCCCTACGGGGAAGTGGAATTAAAAAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042327.1\|WP_146297498.1\|45475_46609_-\|CRISPR-associated-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP042327.1\|WP_146297492.1\|42128_42308_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042327.1\|WP_146297478.1\|33976_34840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042327.1\|WP_146297472.1\|32191_32788_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270691
NZ_CP042327.1\|WP_146297500.1\|46613_49601_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NZ_CP042327.1\|WP_146297480.1\|34927_36850_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350690
NZ_CP042327.1\|WP_146297474.1\|32838_33378_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270695
NZ_CP042327.1\|WP_146297554.1\|44011_44416_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NZ_CP042327.1\|WP_146297469.1\|27239_30128_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|334157
NZ_CP042327.1\|WP_146297488.1\|39953_41681_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187877
NZ_CP042327.1\|WP_146297486.1\|38769_39048_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP042327.1\|WP_146297502.1\|49873_51934_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|226986
NZ_CP042327.1\|WP_146297496.1\|44618_45476_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NZ_CP042327.1\|WP_146297482.1\|37093_37564_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042327.1\|WP_146297470.1\|30186_32079_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226481
NZ_CP042327.1\|WP_146297494.1\|42398_43997_-\|CRISPR-associated-protein-Cmr6	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187792
NZ_CP042327.1\|WP_146297490.1\|41719_42136_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224761
NZ_CP042327.1\|WP_146297476.1\|33424_33946_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270695
NZ_CP042327.1\|WP_146297504.1\|53396_55199_-\|SWIM-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP042327.1\|WP_146297484.1\|37782_38766_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633

Protein	Function_ID	Function_description	E-value
NZ_CP042327.1\|WP_146297498.1\|45475_46609_-\|CRISPR-associated-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.85582e-31
NZ_CP042327.1\|WP_146297500.1\|46613_49601_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	9.89608e-38
NZ_CP042327.1\|WP_146297472.1\|32191_32788_-\|hypothetical-protein	gnl\|CDD\|270691	cd05121, ABC1_ADCK3-like, Activator of bc1 complex (ABC1) kinases (also called aarF domain containing kinase 3) and similar proteins. This family is composed of the atypical yeast protein kinase Abc1p, its human homolog ADCK3 (also called CABC1), and similar proteins. Abc1p (also called Coq8p) is required for the biosynthesis of Coenzyme Q (ubiquinone or Q), which is an essential lipid component in respiratory electron and proton transport. It is necessary for the formation of a multi-subunit Q-biosynthetic complex and may also function in the regulation of Q synthesis. Human ADCK3 is able to rescue defects in Q synthesis and the phosphorylation state of Coq proteins in yeast Abc1 (or Coq8) mutants. Mutations in ADCK3 cause progressive cerebellar ataxia and atrophy due to Q10 deficiency. Eukaryotes contain at least two more ABC1/ADCK3-like proteins: in humans, these are the putative atypical protein kinases named ADCK1 and ADCK2. In algae and higher plants, ABC1 kinases have proliferated to more than 15 subfamilies, most of which are located in plastids or mitochondria. Eight of these plant ABC1 kinase subfamilies (ABC1K1-8) are specific for photosynthetic organisms. ABC1 kinases are not related to the ATP-binding cassette (ABC) membrane transporter family.	1.13891e-05
NZ_CP042327.1\|WP_146297484.1\|37782_38766_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	8.5716e-106
NZ_CP042327.1\|WP_146297480.1\|34927_36850_-\|AAA-family-ATPase	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.21123e-06
NZ_CP042327.1\|WP_146297474.1\|32838_33378_-\|protein-kinase	gnl\|CDD\|270695	cd05144, RIO2_C, C-terminal catalytic domain of the atypical protein serine kinase, RIO2 kinase. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH domains may be involved in RNA recognition. RIO2 is essential for survival and is necessary for rRNA cleavage during 40S ribosomal subunit maturation. RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. The RIO2 kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K).	1.69794e-08
NZ_CP042327.1\|WP_146297469.1\|27239_30128_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|334157	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyze ATP dependent unwinding of double stranded DNA to single stranded DNA. Some members have large insertions near to the carboxy-terminus relative to other members of the family.	7.22824e-12
NZ_CP042327.1\|WP_146297488.1\|39953_41681_-\|hypothetical-protein	gnl\|CDD\|187877	cd09746, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems.	0.00248708
NZ_CP042327.1\|WP_146297486.1\|38769_39048_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.26717e-32
NZ_CP042327.1\|WP_146297496.1\|44618_45476_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	8.85383e-32
NZ_CP042327.1\|WP_146297470.1\|30186_32079_+\|AAA-family-ATPase	gnl\|CDD\|226481	COG3972, COG3972, Superfamily I DNA and RNA helicases [General function prediction only].	1.12668e-11
NZ_CP042327.1\|WP_146297494.1\|42398_43997_-\|CRISPR-associated-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	8.31845e-14
NZ_CP042327.1\|WP_146297502.1\|49873_51934_+\|WYL-domain-containing-protein	gnl\|CDD\|226986	COG4639, COG4639, Predicted kinase [General function prediction only].	1.59123e-21
NZ_CP042327.1\|WP_146297476.1\|33424_33946_-\|hypothetical-protein	gnl\|CDD\|270695	cd05144, RIO2_C, C-terminal catalytic domain of the atypical protein serine kinase, RIO2 kinase. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH domains may be involved in RNA recognition. RIO2 is essential for survival and is necessary for rRNA cleavage during 40S ribosomal subunit maturation. RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. The RIO2 kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K).	1.5088e-07
NZ_CP042327.1\|WP_146297504.1\|53396_55199_-\|SWIM-zinc-finger-domain-containing-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	2.95818e-70
NZ_CP042327.1\|WP_146297490.1\|41719_42136_-\|PIN-domain-containing-protein	gnl\|CDD\|224761	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	1.43485e-07

>NZ_CP042327.1|WP_146297486.1|38769_39048_+|CRISPR-associated-endonuclease-Cas2
MQLYVVTYDIPCDKRRKKVAELLEGYGQRVQLSVFECCLEKQKYEALKKRLQKLVKLDEDSVRFYPLSAHSLSQVEIWGGVPLSQPPGSTII
>NZ_CP042327.1|WP_146297484.1|37782_38766_+|CRISPR-associated-endonuclease-Cas1
MHTLYVAQQGCYVCREQQKLLIKKGEDVLGEVQIPLLEQVLVFGRSQITTQAIQVCLQEDIPIAFLSRMGYCYGRIMPIERGYRQLSRYQQQLTPQERLIIAQRIVETKLKNSRVFLMRQYRTCQKESISLAIKSLNYFAQKTLTVSHLDQLMGIEGSGAVQYFQALGECIAYDEFKLLARTRRPPTNPTNALLSFGYQILWNHLLTLIEMQGLDPYYACLHQGSERHAALASDLIEEFRVPIVDSLVLWLINTRTMNPEQDFRYQEGGCFLNAVGRKKFLNAWLKRMEQPVGTEKQPRWDMLTRQIRQYKEFVYHPVQGYTPYEIQ
>NZ_CP042327.1|WP_146297482.1|37093_37564_-|hypothetical-protein
MMKPFLREQPIPYQEKFFLAIRAGEGNSLEKEVNNENNQVRKSSKTMTQPLELEQQKQQRLSKKRIWISSVLGFFIPIAPYLYTQRWKPLLWLGGTAFGVVFLMETVAPTDNMKNAFQRGQNIGPIMSLITITDNWLAISRARKRFQGDDDNASES
>NZ_CP042327.1|WP_146297480.1|34927_36850_-|AAA-family-ATPase
MTLMKTQTRFISPALNELSSLRTPLTWGEQKVLELFHEKLSPNWEIYIQPHLNGLRPDFVLLNPRVGIAVFEVKDWNLDAMPYRVKFSKTGLPELWATSKTGKDFPVKDNPIEKVMQYKESLVNLYCPRIANKAVANYQYKAVITAGVIMTKAPTQKVKNLFQPFVEDFKLNEKYYPIVGQEALEQKDIKAVFPSARWNSSKLMEPQLAKDLRHWLIEPNIAKTQRQPLELNKKQKELVNSRTDTGFRRIKGSAGSGKSLVLAGRAAQLSAEGKDVLVVSYNITLWHYLRDLAVRHQVPGQKINNVVWCHFHEWCKQVCYDVGWQNKYRELWKQLEGIQDQKEYQEILTKILEVELVQLTKQAINQNLESVPTFDAILVDEGQDYNLDWWNTLRQVCREDGEMLLVADETQDLYQRTQAWTEESMNGAGFRGDWVRLDTCYRTPNQLIPSLQQFAETYLENSVINLPEPETAQTEINVAPVKMRWIQVDNQKDITSITTKAVLKMPVWSEPDTLSYSDIVLLTQDHPSGLKCVEMLKQNRVKVAHVFGKNHEEKKGRKLEFYMGDARVKAATIHSFKGWESSAMVIQINRVDSEQDLATIYVAISRLKRQINGSYLTVVCSAPELEDFGQTWEQFEKINV
>NZ_CP042327.1|WP_146297478.1|33976_34840_-|hypothetical-protein
MKATTEKTVQLETNQCHCQLEFMRRSDNNELYPFYELRLTIAPDLRKALDTMSLNDFFYLVRGGKRSLKQWAQQHPYCFLCLYKDTVWFRFFDHLGFICDGRADTYIAYVDGQGNFTSFPKMLNLVNKEHLYTNELWRLIKDYPEYYEGEFFNPVDRFTKIIESSGLGGNRPEIIIEQDNSRFIQKFLEKTQGKRTTRLTCHYALPLGGKGSLRATTLGSNELSIWVFRARTMFRPRTKIATIYQNYIYVQGFIIHEEDGIKYELTPEIANIIVKAINDINLEECED
>NZ_CP042327.1|WP_146297476.1|33424_33946_-|hypothetical-protein
MFDENLYTKLAFNCPIKDRFEQGYWSDVTLSWPGTVKKTTNSNFGLEQEYAVMLSLWEAGFHDMPKPIQLKDDGDSIVMAEILYGTPLEELLTLVEAGEIPKFLFKHILDILREVLERFWATGFAHNDLHTNNILIGVDQVGNWRVWLIDFGTSLQGDPEKDKTQMRRFFDDL
>NZ_CP042327.1|WP_146297474.1|32838_33378_-|protein-kinase
MFQKEYINLVFNSSKQERFNLGGCAYIYPYLPGKVRKVTKIEFDLKFEYETMVALWRKGFHSMPKPLGISKDKNSILMEEIQDGVPLQEFLSLYQRGQISEACTTHIIELLQKVLSEFWSKEAVHGDLHANNILIGKDIQGAWKVWIIDFGATFFGGDYQIDRSRLQIFLEHYGVSALS
>NZ_CP042327.1|WP_146297472.1|32191_32788_-|hypothetical-protein
MFNQELVTLYNHLLSRQTIQERFATGGTADLLLLTPGLVAKADKKGYQFVEREYHLMRELWDSGFRKMPQPHEDWGLGFTPEATLVMDEIQHSVQLEEVANAYLEGIVPKFVMKHILDLKEEVFADFWSRGAVHADPHLKNILVNLDQQQNWQVWLIDFGMSFWEGNDDRVFPTTTGSIAKDREKHSFYLSQFGLDEL
>NZ_CP042327.1|WP_146297470.1|30186_32079_+|AAA-family-ATPase
MAITIPSSIPNKASAGEKRLFNVLANNLPDTFRVWYEPFINERRPDFIILGPEFGLLVIEVKGWYGSQIVKANADSFEILPRNQDINTPQLHQSPLRQGRNYLDSLSQNLETYKVLLQQKGRYQGHLAFPVGVGVVMSNLSQKQASELALEEILPFPTVAYSDELREWETIDSEALIQRLEQMLITRFSFSPLTEDQISTIKGVIYPEIVIGSKSASPQSIPGGVSPLPNHLILSTLDAKQEALAKSIGGGHRIFFGVSGSGKTLLLLSRAKMLVQQNSQARILVLCFNISLSSMLRSILDQASDDNRAIEVHHFHAWAKEVVGKPITSKSGVNYDEYVGQQILENLRSYPQQQKWDAILIDEAHTFLPIWFQCCVQALKDPENGDLMIVADGSQSIYKRSDFTWKSVGIKAQGRTISKKFDLDRNYRNTKEILTAAWSILQTGPKVAQNSDSDEITFPIVEPSQALRQGKLPQIDSLSSKISLETTVAQKVKTQLDAGYNESEIAIIYRKASEQQLKQLQNELQEVGIEFFWVSKNQKNKANYRIEKPGIRLITTLSCLGLEFEVVLIPWMENFSDCSKRTEGATLARRELYVAMTRAKQELYLFSSQKNHFLQELENSNCFNVTSSNS
>NZ_CP042327.1|WP_146297469.1|27239_30128_+|UvrD-helicase-domain-containing-protein
MTLPVIIHPDVISFFNNSSQTDFGNRVWKCIDKLKKRQFDGGLRVKKLQGTTKRVWEARVTQAVRLIFTYTKSIQADTGEPQVYLTIQDLCLDHDDVSRQVKARQRTPDHQWLDAEELETVGSLETERTSLTPDEQSAIDQAEAEELQISEEVVDELVGNIQWRVVESESEWQQAITNQDVDLPLKLTPEEYELVNHYGNLLLSGNAGTGKTTVGLYRLLKSLENLPEGKRLYVAYNPVLVKEAKQKFNRLVGAKISEVESLFEFKTIRELCLDILEEAGETYFEANEVTYQAFDHLYRRAERNQYPSALVWDEIRSIIKGSYLETDQNLLSKNQYKQLGKKRSSTISTDQRPKIYELAEWYQKQLDTDERFDEIDLARQVLKLIKQGTGNRYEMIICDEVQDLTELQLHLLLQLITPNGHLFFAGDLNQIVSSSGFRWKELKSKLYRNKRPVKQETLYFNFRSVGSLTQLANQVLKLKSRLLNETVEQSNQAVNSYGEWARLINASSSELQPTLEQLNPEDAILVRTEANKDEISDKFQSSFVFTIEEAKGLEFDTVFLVEFFQVNSNLWQKVLEGKGTLKDKEKPALRRELNLLYVAITRTRRILNIWETQLSSLWTQEEVDSFTEQIEPESVREVRIEPTAEMWKERGLYYLEAKFYRQAIECFKFSGDFQLQRQSEAKLFLQEGKESEAIEIFVELGNHEKVAQLFEKQKQWEKAAEQYNLAGLEEKVTECREKNQQKHNLNNNTNKKSYFKRKRKSKIINKSKIDTKEQQSAIYIDTIFLNQALFYTGQVYQKLHPNLFSKNEWSKKLNVMNISELVPFLIEYISPEHPNYKWPGLSSDKRIDVFAFKCSEVWGQITVDPDQFSVNDKECRIQLFEVDLVAPSIQSHIVKNIQQYKGICIVGNDLLYDIMIKQGIEKGFSFSRYKSHHMEDKITAQVPFQYIAYPIGRSWGLQSYEL
>NZ_CP042327.1|WP_146297488.1|39953_41681_-|hypothetical-protein
MTILIANIGTSDLAVNVEGYYLPIRFDRNEPNLDESQLTEEEKIVWDQEYRQSDVIDKLCPELGVETKPEGREKFFFRDFTEKLLAAYEQDEGKWHSRISPGRLQGIVTTAKNQFQARSAFIFVTDQPQKHKDDSIHLFKILKKWFWREMEFELIPKYIPSDTDDFAVNLDLLLDFYYRFFHELNSQEEILVSIKGGTPQMQNALRLQAVSSTIPKQLFVEPKLSVKNILAGQPSECELTAYWKYMRNQKYQTVQQLLDRWDFDGAISILKSWHSILTFLDNKDVLRKGEIKQSRKRLDLVIAGLSIARSLFNLDIKGGRSIINDDKTDQSSLNQYFRFSDFLDEGNYDSLLNLYTQCRIYYELSQTANFLARVGSFYENAIIRLIEKRGGYHYLDQWKINVNQLQNKIGNPLLQEFRKLEGKGSLENPYSIKFSRYSKCNYLDILIKHRAQTNSNLQSDLDNWNQHQFQFSGRTFNGILGLFKALDYWIEKRNDLVHNAEGLSQVRIKDFNRDRPQEACTYDDIIPILTEILKNPLVALNRNYRQEFVENNHYYIYSNTKESAIALLMTDASDN
>NZ_CP042327.1|WP_146297490.1|41719_42136_-|PIN-domain-containing-protein
MSNELLVDTNILVYAIDEDSQFYATSRSVLQKKDKTLFTTSKNITEFLTVMTRSSGYGLSTETALNLLQKLIQQLEIIYPTPDSLATFLELVASYQPSGLKLHDFEIISIALANGICDIATFNQKDFQTITEITLFEL
>NZ_CP042327.1|WP_146297492.1|42128_42308_-|hypothetical-protein
MITKDDLKKEIDHLSEADLKKVYWYLVTLKKHQSEALNLPAMKLQGRLDNQDIRAIANE
>NZ_CP042327.1|WP_146297494.1|42398_43997_-|CRISPR-associated-protein-Cmr6
MVNPLQELNSKNFETDQDRNQSLESVANAEGKCGKVYQQLTQKTENLADETLKVTFSWRVRVGGMRGFQELLLPVFHPVYGVPYIPSSSLKGALLAQAKKHAKNEEISLAEVKRILGDIDQGIGTVQILDAFPTEPCLSVDMANPQWSWKDNQVQYNPVPHPLLSMEEPEILIGLVSTSRGRYQQQKNDDLQTVKGWLKQALHAGIGSRVSAGYGRTTVKGNLPHSSTHHFQFYSQGMFGASNQDKTFRPVALRGILRYWFRAIALGLYNNQTAQEFENELFGQLSQEGSFRLGVELTEEDMGNRNNPYFCQGNILIEAKTEKHHKAIEQTLLLASHLGGIGRGSRRPLHWNNGRLRGCLWKFPDQILPCDEVEWSELIEDTLDSFKAVYSAQPPDHHPLIIDVQEKGKTVKRRCQDVLNNNDAIIYLVPSPGLKYPEAVNNWNSEGHQHKVIGQGLGLLYSSDHYKGYNNFTRRGNKNVGGKLGIPSYVWIQSNFPDDDDPYQVVSVFGAGHPQRDRFIQALPNDSIQVYP
>NZ_CP042327.1|WP_146297554.1|44011_44416_-|hypothetical-protein
MKLDTRQFSLEAYEGLTEVKERLTKELSEDYCKRASSLVQGLTAYISTWGLHRLSGDMKKFLNGTGSDTKYKGIVYQVFLNRLKTFSNGNFDPNNESTLIQLPLREYTVLNRLSIQLAKEWSFWAVAVLGEAKE
>NZ_CP042327.1|WP_146297496.1|44618_45476_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTQQLTYMYLLTPLHTGASADEGNLMGIAREVHTEFPYLPASSLRGKIRAELEASHGEEEAGIFFGQKIKDGQQPTEGEVWFADATLLFFPIASLSHHLIWITCPLFLERWNRWLDQNPLSHFIAQCRSKITDNTPALVSFDTNELLLQNAKLSRNHLNHQPVTEIANNLKHLPSQNGMISQILDNLVIVSDEDCISLIETGLQREVRVTLEEREKTVKDGSFRSEEAIPPEAVLFFPWGMKPAKDEANTNNIRTATQQLLDDKLQFGGLEGLGRGWAYLNTVND
>NZ_CP042327.1|WP_146297498.1|45475_46609_-|CRISPR-associated-protein
MQWYTMTPLDVLLFRESKPFTPGDGSWAQGQFPPLPTTVFQALRSALPVYEESQRDLEFLGPFLMDEENTLWLATPQDLLCIGEKSSEETPEDEYEDTADTWQETVRLIPNTSEVLVNENTSLSQAWQYLKSSQSFAVMVPPPLNENQFICGRPQPWIKAEALLDYLQGKSLSDPNAFHADPWSSQVLPHIHMETGKRQVKAEEGYFTEVATRLHPGWRLVMACSANIEEETVIRLGGEGHRALLSAIAPPSVWKQLEELNTPDSDRNCAYVLTPGLAQRIPHEPIYGTYPYYWQEALESYVSDRALLWGGVSQIQRQTKGETEFSLLPQRAFVPPGTLYQFRELPERTDSLLPPQGGVLLHTLQQLNYGKLLWGKN
>NZ_CP042327.1|WP_146297500.1|46613_49601_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MIRRKLYALIQTYSTSGNSICSQLHCLEGHLEELQQWWNVNRLSQDIASSSDRVNLETDQEPQQIKHPISGQSQRLSGEKADHLPDLTSIAQESDPEKVFWWFWRFFPEAQVNPNQQAFLPAHAVLPDCPLYSYSSTVSALVGAMNSETGTPQHPYLLLFTFSPVQEFIKASRKFLDFWAGSYLLHYLGAKIAWEIAQQYGPDAVITPSLWSQEIIDALLQQKYPDFETFFQEYTGNDPVSRFNDQESTSLSTAGFPNMITAVVPGEKAAQELGDHLKQTLNITWTGIGEKVRETIKNRVMTALDTAEKRQNLWTAIKDEFSENPELYRQELEKWQQGGCWEWNRLWNAQLEHTWEPYWTAIPLGSPEMGLEISLQDEAFSQWREQQDQLSQTRQTIPTTAETNVYENINIGTWWGSLQQRLGQSIQAVKNTRTWAIPASPGERSTLSGHYSAVHPNLLYKDHFREGGGLAGGSMRLFWRVIAEVFPGLFNGSEKLNALELTKRMAWVYGGVGESLGIKTRETTQEETPNYEQAIRFPNLSSIAAARFAHNHPEKVKSYWHTLEPLIRSYFSRKQRDRFGSLTRRPFQVPKVDQVFDKNNPFNGVMFSSKWLGDDLNLTTEQEKAELQNCIDQAHQENGFGNSSPADWWVIVLGDGDGMGQYVSGRKLEFYESYLDTNVISPEVQQTQGYEELLHQTKKRMGPATHVGLNRALLDFSNRLVPYLTQERCCGKVIYSGGDDVMTVLPIEDLSLFLRSLRAAWCGGNDPIGEFDDSPDDNASDSCGYWYPKQDQDIPLVNRPYFTMGKGATMSLGIVIAHKSVPLPTVLQNLWSAESDRAKELAGAKETQKQETIPPKDGLCFRVIYGSGNVLESLMKGHLLDAWCDLLENAPPQAFSGLLYRLAEELPKRCPVTPNLKLFREATQVILNRRDQGLDQEQSEQLLNWLDQWEDWAYRANPSKDPNIIGTTPEDLGKILRFTAFWVTRLEERQKWTGE
>NZ_CP042327.1|WP_146297502.1|49873_51934_+|WYL-domain-containing-protein
MSLLCHILIGCPSSGKSSLARAIAQESPHYRIISTDQIRAELFGDQTIQGNWSQVEAKVYEAIDQALKAGFPIIYDATNAKRAWRMGLLEHLRQYRDVDWMGWYLKTPLETCLQWNKKRDRQVPEAVIQRMNHWLKQFPPDDGEGFTALHTLKPDTLDSWLQQINQGINKLPKTKINRENCNRPLTFHTYSRLLDFERLMYLIRLLIQYPGLGNLQTASPEIIEKVLGEEQTFEDEIEEICAFLAKTADPLYADPKAVAQDLQWLESNGLLGGNNLQQPLELGIYQSQDYPTHHYSDIEPFLRLINTIRLILHEPFIREPNSTTLKSFVHRLQFEGLIKHQAEEKQISNLRKDIEKVLKPYEILPHFSMRRGYFMGTAILSFPELVKVFRLLESQAKSLEDPESLEIYQLFQERMQWSQLADTQSYPVRAIHNRNIVNLEKLSPSALALNIKKLEVAIEQGQLLELGRIIGSGRYQSGEDNYFFAYPLQLVFHNIGWYLGLERYDGNHQGLLQFERVDRLLLGRTPSQKRPLSEQWSALKRLRKLYEYSGGIYLGKDVKQQKNYLSREPSQRKMAEVTVELWINDAMFRFISEGTKRFPLKQMKMSKSFNPDLNRKNKTLFSLKTTNDPNFPNRYQVKLPCWCVDDYDFHRWILGFGGQVKVMSPDSLKTIIQEKGTAIAQLYNQE
>NZ_CP042327.1|WP_146297504.1|53396_55199_-|SWIM-zinc-finger-domain-containing-protein
MAIPNLTYAVIEENTRPQSLERGQDYFHTGAVFSVTQRKQTIFSQVEGNEIDPYHLTITFDDHGITHTTCTCAYNFEGWCKHIVATLLFCLNQPEEIQERPSLNELLDQLNLVQTQNLIQALVENDPTLIEEIDFQVSRLLSSTPSPTESKSSKAQPKRTTVDSAPLKRRVEQILYDTAVAWENGWDDNDVELRLCQLIDEARTFAERGDGNNALTILQGIIEGCFENWDVVSDYGLEPEDIDIDFDRACTEAILSGDFTEEEVLLWQETIEMWQEEWGSFAMALEALRQGWDYPPLLKVLSEETPEQRPWQGEPPQWAEDLSRVRLRILERQERYEEYLRLAQAEGQIKDYLIMLARLGRVEQVMTLAPTVIDSFVEAKALAETLWEKQYQSQALTIAQLGLELCFDPQDNNFLVRDSGFAIWTSKLAETIGDSEAALDARIIAFKMEPSFSDYERLEALAHNWSELKTELLQSLRETDSWRAEHAKVNIFLKEGLIEDAIAIVSDLSSYHTQLIFKVMDQVLESHSQWVIDDAKARAESIIERSHAKLYELAVQWLKRVHAAYLAMNQESEWLRYREELVKAHGRKRKLMGLMENRRL

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Crispr_ID: NZ_CP042327_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042327_2

52227-53166

TypeIII

Consensus_repeat	Method
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	PILER-CR
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CRISPRCasFinder
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CRT

12 spacers

WYL,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csx1,cas2

The CRISPR arrays of NZ_CP042327_2

>merge|NZ_CP042327|2|52227-53166|PILER-CR,CRISPRCasFinder,CRT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTCCTTTCTCCAGTAATTGGAAGCCTTCTGTCTGAAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTTCTAGAACAGTACCAAACTCATCATCGCTCCAATGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACACATATCTGACGTTGTAGATTGATGCAGGGACTCGGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACAAGAGGTCTTCTGTTCCAGCCTCTTTGTGAGCTTTTAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTTCTTTGGGATTTAGACTTGTGTTCTTTTTCAGTCGCGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACCTGAATTTGGCAATGAAGTCACCAGACCGCTCTGGCTTGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACCTTAGAAGACCCTAAGGAGAATGGCTTAGCTCCCTTTAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACTTCTTAGCTTCCTGATTAACTTTATTTACATCAGCATTGTTGTAGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACATCCTTAGTCAACCCATCAGGGGCATTAATCCGACTACCGCTGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACAGGTTTACGCGATTAGTTAGCTTGATGAAATCTTTCAGTCGCTTCCCTACGGAGAAGTGGAATTAATGGAAACTACATCTGTGTGTTAGGCTTGCTAGACTTAATATAATGTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAACCCCCTAACGAGCACCAGACTCGATTTACAGGGGCGAGGACTACTTCCTCATCCTTCTGTCGCTTTCCTACGGGGAAGTGGAATTAATGCCACT

>NZ_CP042327|2|2|52227-53000|PILER-CR
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TCCTTTCTCCAGTAATTGGAAGCCTTCTGTCTGAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTAGAACAGTACCAAACTCATCATCGCTCCAAT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	ACATATCTGACGTTGTAGATTGATGCAGGGACTCG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AAGAGGTCTTCTGTTCCAGCCTCTTTGTGAGCTTTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTTTGGGATTTAGACTTGTGTTCTTTTTCAGTCGC
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTGAATTTGGCAATGAAGTCACCAGACCGCTCTGGCTT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTTAGAAGACCCTAAGGAGAATGGCTTAGCTCCCTTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTTAGCTTCCTGATTAACTTTATTTACATCAGCATTGTTGTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	ATCCTTAGTCAACCCATCAGGGGCATTAATCCGACTACCGCT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AGGTTTACGCGATTAGTTAGCTTGATGAAATCTTTCA
GTCGCTTCCCTACGGAGAAGTGGAATTAATGGAAAC

>NZ_CP042327|2|2|52227-53166|CRISPRCasFinder
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TCCTTTCTCCAGTAATTGGAAGCCTTCTGTCTGAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTAGAACAGTACCAAACTCATCATCGCTCCAAT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	ACATATCTGACGTTGTAGATTGATGCAGGGACTCG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AAGAGGTCTTCTGTTCCAGCCTCTTTGTGAGCTTTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTTTGGGATTTAGACTTGTGTTCTTTTTCAGTCGC
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTGAATTTGGCAATGAAGTCACCAGACCGCTCTGGCTT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTTAGAAGACCCTAAGGAGAATGGCTTAGCTCCCTTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTTAGCTTCCTGATTAACTTTATTTACATCAGCATTGTTGTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	ATCCTTAGTCAACCCATCAGGGGCATTAATCCGACTACCGCT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AGGTTTACGCGATTAGTTAGCTTGATGAAATCTTTCA
GTCGCTTCCCTACGGAGAAGTGGAATTAATGGAAAC	TACATCTGTGTGTTAGGCTTGCTAGACTTAATATAAT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCCCTAACGAGCACCAGACTCGATTTACAGGGGCGAGGACTACTTCCTCATCCTTCT
GTCGCTTTCCTACGGGGAAGTGGAATTAATGCCACT

>NZ_CP042327|2|2|52227-53166|CRT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TCCTTTCTCCAGTAATTGGAAGCCTTCTGTCTGAA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTAGAACAGTACCAAACTCATCATCGCTCCAAT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	ACATATCTGACGTTGTAGATTGATGCAGGGACTCG
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AAGAGGTCTTCTGTTCCAGCCTCTTTGTGAGCTTTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTTTGGGATTTAGACTTGTGTTCTTTTTCAGTCGC
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTGAATTTGGCAATGAAGTCACCAGACCGCTCTGGCTT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CTTAGAAGACCCTAAGGAGAATGGCTTAGCTCCCTTTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	TTCTTAGCTTCCTGATTAACTTTATTTACATCAGCATTGTTGTA
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	ATCCTTAGTCAACCCATCAGGGGCATTAATCCGACTACCGCT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	AGGTTTACGCGATTAGTTAGCTTGATGAAATCTTTCA
GTCGCTTCCCTACGGAGAAGTGGAATTAATGGAAAC	TACATCTGTGTGTTAGGCTTGCTAGACTTAATATAAT
GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC	CCCCTAACGAGCACCAGACTCGATTTACAGGGGCGAGGACTACTTCCTCATCCTTCT
GTCGCTTTCCTACGGGGAAGTGGAATTAATGCCACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042327.1\|WP_146297498.1\|45475_46609_-\|CRISPR-associated-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP042327.1\|WP_146297500.1\|46613_49601_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NZ_CP042327.1\|WP_146297518.1\|59092_59329_-\|DUF2283-domain-containing-protein	unknown	unknown	gnl\|CDD\|378367
NZ_CP042327.1\|WP_146297510.1\|56458_56647_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377095
NZ_CP042327.1\|WP_146297490.1\|41719_42136_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224761
NZ_CP042327.1\|WP_146297502.1\|49873_51934_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|226986
NZ_CP042327.1\|WP_146297554.1\|44011_44416_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NZ_CP042327.1\|WP_146297492.1\|42128_42308_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042327.1\|WP_146297488.1\|39953_41681_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187877
NZ_CP042327.1\|WP_146297486.1\|38769_39048_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP042327.1\|WP_146297514.1\|58036_58414_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|223792
NZ_CP042327.1\|WP_146297496.1\|44618_45476_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NZ_CP042327.1\|WP_146297506.1\|55530_55830_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NZ_CP042327.1\|WP_146297494.1\|42398_43997_-\|CRISPR-associated-protein-Cmr6	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187792
NZ_CP042327.1\|WP_146297512.1\|56850_57726_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271195
NZ_CP042327.1\|WP_146297516.1\|58477_58744_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042327.1\|WP_146297522.1\|59741_60002_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|373040
NZ_CP042327.1\|WP_146297504.1\|53396_55199_-\|SWIM-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP042327.1\|WP_146297520.1\|59485_59752_+\|BrnT-family-toxin	unknown	unknown	gnl\|CDD\|367913
NZ_CP042327.1\|WP_146297508.1\|55813_56221_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786

Protein	Function_ID	Function_description	E-value
NZ_CP042327.1\|WP_146297498.1\|45475_46609_-\|CRISPR-associated-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.85582e-31
NZ_CP042327.1\|WP_146297500.1\|46613_49601_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	9.89608e-38
NZ_CP042327.1\|WP_146297518.1\|59092_59329_-\|DUF2283-domain-containing-protein	gnl\|CDD\|378367	pfam10049, DUF2283, Protein of unknown function (DUF2283). Members of this family of hypothetical bacterial proteins have no known function.	5.94767e-05
NZ_CP042327.1\|WP_146297510.1\|56458_56647_+\|hypothetical-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	7.73618e-07
NZ_CP042327.1\|WP_146297490.1\|41719_42136_-\|PIN-domain-containing-protein	gnl\|CDD\|224761	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	1.43485e-07
NZ_CP042327.1\|WP_146297502.1\|49873_51934_+\|WYL-domain-containing-protein	gnl\|CDD\|226986	COG4639, COG4639, Predicted kinase [General function prediction only].	1.59123e-21
NZ_CP042327.1\|WP_146297488.1\|39953_41681_-\|hypothetical-protein	gnl\|CDD\|187877	cd09746, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems.	0.00248708
NZ_CP042327.1\|WP_146297506.1\|55530_55830_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	3.48928e-37
NZ_CP042327.1\|WP_146297514.1\|58036_58414_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	2.60341e-41
NZ_CP042327.1\|WP_146297496.1\|44618_45476_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	8.85383e-32
NZ_CP042327.1\|WP_146297486.1\|38769_39048_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.26717e-32
NZ_CP042327.1\|WP_146297494.1\|42398_43997_-\|CRISPR-associated-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	8.31845e-14
NZ_CP042327.1\|WP_146297512.1\|56850_57726_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	7.19788e-49
NZ_CP042327.1\|WP_146297520.1\|59485_59752_+\|BrnT-family-toxin	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	1.83083e-33
NZ_CP042327.1\|WP_146297522.1\|59741_60002_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|373040	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system. BrnA is family of antitoxins that neutralizes the toxin BrnT, pfam04365. It consists of 3 alpha-helices and a C-terminal ribbon-helix-helix DNA binding domain. As in other toxin-antitoxin systems, BrnA negatively autoregulates the brnTA operon and has higher affinity for the DNA operator when complexed with BrnT. It dimerizes with two molecules of its toxin BrnT.	3.56067e-09
NZ_CP042327.1\|WP_146297504.1\|53396_55199_-\|SWIM-zinc-finger-domain-containing-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	2.95818e-70
NZ_CP042327.1\|WP_146297508.1\|55813_56221_+\|transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	1.51512e-17

>NZ_CP042327.1|WP_146297502.1|49873_51934_+|WYL-domain-containing-protein
MSLLCHILIGCPSSGKSSLARAIAQESPHYRIISTDQIRAELFGDQTIQGNWSQVEAKVYEAIDQALKAGFPIIYDATNAKRAWRMGLLEHLRQYRDVDWMGWYLKTPLETCLQWNKKRDRQVPEAVIQRMNHWLKQFPPDDGEGFTALHTLKPDTLDSWLQQINQGINKLPKTKINRENCNRPLTFHTYSRLLDFERLMYLIRLLIQYPGLGNLQTASPEIIEKVLGEEQTFEDEIEEICAFLAKTADPLYADPKAVAQDLQWLESNGLLGGNNLQQPLELGIYQSQDYPTHHYSDIEPFLRLINTIRLILHEPFIREPNSTTLKSFVHRLQFEGLIKHQAEEKQISNLRKDIEKVLKPYEILPHFSMRRGYFMGTAILSFPELVKVFRLLESQAKSLEDPESLEIYQLFQERMQWSQLADTQSYPVRAIHNRNIVNLEKLSPSALALNIKKLEVAIEQGQLLELGRIIGSGRYQSGEDNYFFAYPLQLVFHNIGWYLGLERYDGNHQGLLQFERVDRLLLGRTPSQKRPLSEQWSALKRLRKLYEYSGGIYLGKDVKQQKNYLSREPSQRKMAEVTVELWINDAMFRFISEGTKRFPLKQMKMSKSFNPDLNRKNKTLFSLKTTNDPNFPNRYQVKLPCWCVDDYDFHRWILGFGGQVKVMSPDSLKTIIQEKGTAIAQLYNQE
>NZ_CP042327.1|WP_146297500.1|46613_49601_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MIRRKLYALIQTYSTSGNSICSQLHCLEGHLEELQQWWNVNRLSQDIASSSDRVNLETDQEPQQIKHPISGQSQRLSGEKADHLPDLTSIAQESDPEKVFWWFWRFFPEAQVNPNQQAFLPAHAVLPDCPLYSYSSTVSALVGAMNSETGTPQHPYLLLFTFSPVQEFIKASRKFLDFWAGSYLLHYLGAKIAWEIAQQYGPDAVITPSLWSQEIIDALLQQKYPDFETFFQEYTGNDPVSRFNDQESTSLSTAGFPNMITAVVPGEKAAQELGDHLKQTLNITWTGIGEKVRETIKNRVMTALDTAEKRQNLWTAIKDEFSENPELYRQELEKWQQGGCWEWNRLWNAQLEHTWEPYWTAIPLGSPEMGLEISLQDEAFSQWREQQDQLSQTRQTIPTTAETNVYENINIGTWWGSLQQRLGQSIQAVKNTRTWAIPASPGERSTLSGHYSAVHPNLLYKDHFREGGGLAGGSMRLFWRVIAEVFPGLFNGSEKLNALELTKRMAWVYGGVGESLGIKTRETTQEETPNYEQAIRFPNLSSIAAARFAHNHPEKVKSYWHTLEPLIRSYFSRKQRDRFGSLTRRPFQVPKVDQVFDKNNPFNGVMFSSKWLGDDLNLTTEQEKAELQNCIDQAHQENGFGNSSPADWWVIVLGDGDGMGQYVSGRKLEFYESYLDTNVISPEVQQTQGYEELLHQTKKRMGPATHVGLNRALLDFSNRLVPYLTQERCCGKVIYSGGDDVMTVLPIEDLSLFLRSLRAAWCGGNDPIGEFDDSPDDNASDSCGYWYPKQDQDIPLVNRPYFTMGKGATMSLGIVIAHKSVPLPTVLQNLWSAESDRAKELAGAKETQKQETIPPKDGLCFRVIYGSGNVLESLMKGHLLDAWCDLLENAPPQAFSGLLYRLAEELPKRCPVTPNLKLFREATQVILNRRDQGLDQEQSEQLLNWLDQWEDWAYRANPSKDPNIIGTTPEDLGKILRFTAFWVTRLEERQKWTGE
>NZ_CP042327.1|WP_146297498.1|45475_46609_-|CRISPR-associated-protein
MQWYTMTPLDVLLFRESKPFTPGDGSWAQGQFPPLPTTVFQALRSALPVYEESQRDLEFLGPFLMDEENTLWLATPQDLLCIGEKSSEETPEDEYEDTADTWQETVRLIPNTSEVLVNENTSLSQAWQYLKSSQSFAVMVPPPLNENQFICGRPQPWIKAEALLDYLQGKSLSDPNAFHADPWSSQVLPHIHMETGKRQVKAEEGYFTEVATRLHPGWRLVMACSANIEEETVIRLGGEGHRALLSAIAPPSVWKQLEELNTPDSDRNCAYVLTPGLAQRIPHEPIYGTYPYYWQEALESYVSDRALLWGGVSQIQRQTKGETEFSLLPQRAFVPPGTLYQFRELPERTDSLLPPQGGVLLHTLQQLNYGKLLWGKN
>NZ_CP042327.1|WP_146297496.1|44618_45476_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTQQLTYMYLLTPLHTGASADEGNLMGIAREVHTEFPYLPASSLRGKIRAELEASHGEEEAGIFFGQKIKDGQQPTEGEVWFADATLLFFPIASLSHHLIWITCPLFLERWNRWLDQNPLSHFIAQCRSKITDNTPALVSFDTNELLLQNAKLSRNHLNHQPVTEIANNLKHLPSQNGMISQILDNLVIVSDEDCISLIETGLQREVRVTLEEREKTVKDGSFRSEEAIPPEAVLFFPWGMKPAKDEANTNNIRTATQQLLDDKLQFGGLEGLGRGWAYLNTVND
>NZ_CP042327.1|WP_146297554.1|44011_44416_-|hypothetical-protein
MKLDTRQFSLEAYEGLTEVKERLTKELSEDYCKRASSLVQGLTAYISTWGLHRLSGDMKKFLNGTGSDTKYKGIVYQVFLNRLKTFSNGNFDPNNESTLIQLPLREYTVLNRLSIQLAKEWSFWAVAVLGEAKE
>NZ_CP042327.1|WP_146297494.1|42398_43997_-|CRISPR-associated-protein-Cmr6
MVNPLQELNSKNFETDQDRNQSLESVANAEGKCGKVYQQLTQKTENLADETLKVTFSWRVRVGGMRGFQELLLPVFHPVYGVPYIPSSSLKGALLAQAKKHAKNEEISLAEVKRILGDIDQGIGTVQILDAFPTEPCLSVDMANPQWSWKDNQVQYNPVPHPLLSMEEPEILIGLVSTSRGRYQQQKNDDLQTVKGWLKQALHAGIGSRVSAGYGRTTVKGNLPHSSTHHFQFYSQGMFGASNQDKTFRPVALRGILRYWFRAIALGLYNNQTAQEFENELFGQLSQEGSFRLGVELTEEDMGNRNNPYFCQGNILIEAKTEKHHKAIEQTLLLASHLGGIGRGSRRPLHWNNGRLRGCLWKFPDQILPCDEVEWSELIEDTLDSFKAVYSAQPPDHHPLIIDVQEKGKTVKRRCQDVLNNNDAIIYLVPSPGLKYPEAVNNWNSEGHQHKVIGQGLGLLYSSDHYKGYNNFTRRGNKNVGGKLGIPSYVWIQSNFPDDDDPYQVVSVFGAGHPQRDRFIQALPNDSIQVYP
>NZ_CP042327.1|WP_146297492.1|42128_42308_-|hypothetical-protein
MITKDDLKKEIDHLSEADLKKVYWYLVTLKKHQSEALNLPAMKLQGRLDNQDIRAIANE
>NZ_CP042327.1|WP_146297490.1|41719_42136_-|PIN-domain-containing-protein
MSNELLVDTNILVYAIDEDSQFYATSRSVLQKKDKTLFTTSKNITEFLTVMTRSSGYGLSTETALNLLQKLIQQLEIIYPTPDSLATFLELVASYQPSGLKLHDFEIISIALANGICDIATFNQKDFQTITEITLFEL
>NZ_CP042327.1|WP_146297488.1|39953_41681_-|hypothetical-protein
MTILIANIGTSDLAVNVEGYYLPIRFDRNEPNLDESQLTEEEKIVWDQEYRQSDVIDKLCPELGVETKPEGREKFFFRDFTEKLLAAYEQDEGKWHSRISPGRLQGIVTTAKNQFQARSAFIFVTDQPQKHKDDSIHLFKILKKWFWREMEFELIPKYIPSDTDDFAVNLDLLLDFYYRFFHELNSQEEILVSIKGGTPQMQNALRLQAVSSTIPKQLFVEPKLSVKNILAGQPSECELTAYWKYMRNQKYQTVQQLLDRWDFDGAISILKSWHSILTFLDNKDVLRKGEIKQSRKRLDLVIAGLSIARSLFNLDIKGGRSIINDDKTDQSSLNQYFRFSDFLDEGNYDSLLNLYTQCRIYYELSQTANFLARVGSFYENAIIRLIEKRGGYHYLDQWKINVNQLQNKIGNPLLQEFRKLEGKGSLENPYSIKFSRYSKCNYLDILIKHRAQTNSNLQSDLDNWNQHQFQFSGRTFNGILGLFKALDYWIEKRNDLVHNAEGLSQVRIKDFNRDRPQEACTYDDIIPILTEILKNPLVALNRNYRQEFVENNHYYIYSNTKESAIALLMTDASDN
>NZ_CP042327.1|WP_146297486.1|38769_39048_+|CRISPR-associated-endonuclease-Cas2
MQLYVVTYDIPCDKRRKKVAELLEGYGQRVQLSVFECCLEKQKYEALKKRLQKLVKLDEDSVRFYPLSAHSLSQVEIWGGVPLSQPPGSTII
>NZ_CP042327.1|WP_146297504.1|53396_55199_-|SWIM-zinc-finger-domain-containing-protein
MAIPNLTYAVIEENTRPQSLERGQDYFHTGAVFSVTQRKQTIFSQVEGNEIDPYHLTITFDDHGITHTTCTCAYNFEGWCKHIVATLLFCLNQPEEIQERPSLNELLDQLNLVQTQNLIQALVENDPTLIEEIDFQVSRLLSSTPSPTESKSSKAQPKRTTVDSAPLKRRVEQILYDTAVAWENGWDDNDVELRLCQLIDEARTFAERGDGNNALTILQGIIEGCFENWDVVSDYGLEPEDIDIDFDRACTEAILSGDFTEEEVLLWQETIEMWQEEWGSFAMALEALRQGWDYPPLLKVLSEETPEQRPWQGEPPQWAEDLSRVRLRILERQERYEEYLRLAQAEGQIKDYLIMLARLGRVEQVMTLAPTVIDSFVEAKALAETLWEKQYQSQALTIAQLGLELCFDPQDNNFLVRDSGFAIWTSKLAETIGDSEAALDARIIAFKMEPSFSDYERLEALAHNWSELKTELLQSLRETDSWRAEHAKVNIFLKEGLIEDAIAIVSDLSSYHTQLIFKVMDQVLESHSQWVIDDAKARAESIIERSHAKLYELAVQWLKRVHAAYLAMNQESEWLRYREELVKAHGRKRKLMGLMENRRL
>NZ_CP042327.1|WP_146297506.1|55530_55830_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MRIISYKTLRVAANKHPDLKQPLDDWYKIAKSANWTSLNDVRKTFKSADSVGNFTVFNIKGNHYRLIVGIDYQKQIIFIKYVLTHAEYDKEAWKNDPYY
>NZ_CP042327.1|WP_146297508.1|55813_56221_+|transcriptional-regulator
MTRTTNQNLTDITDIFPFVIKTEKQYNKALSITESLFFKENRNQEEEQALDVWTVLIEMYENQQFSPGSEATPVSILNTLMESQGITQADLVREGIGSSGVVSEMVNNKRTISNKQAKKLAKIFHVSPEVFIHFD
>NZ_CP042327.1|WP_146297510.1|56458_56647_+|hypothetical-protein
MALLEAGEISSGKAGSLLGLPRNEVIERMEKWGIPLFDNSLELGELQQEVEQANRALDKDSK
>NZ_CP042327.1|WP_146297512.1|56850_57726_+|tyrosine-type-recombinase/integrase
MSKRSKDTRRVYSNDLQWFFYAVSGEVSAGAVRAFLALPRIQALRVLMGYQDSLAANGYAGSTINRKVSAVKSLVEYAYRIGECEWQLPRLKREREQRYKDTTGVSVEQIRLMMAVPDRATAKGKRNYAILRLLWENGLRRGEIAKITCGEIDWEEQRITIYGKGRREEGEEIDVSDRALEAIRDWLTVRPQSEYDVLFTSLDHNTLGKPLSLTSIYRMVRRLGEKAGIKKIVSPHKIRHSAITAYLDASDGDMRGGASFARHSDLSVTQVYDDNRKRQQKKATKILSDLA
>NZ_CP042327.1|WP_146297514.1|58036_58414_-|6-carboxytetrahydropterin-synthase-QueD
MDQWVIYKEFYFEAAHQLPNHNGKCRRLHGHSWVGRVYLQGKTLHQHGSQQGMLMDYGEIKKYIQPLLDHYLDHYYLNETTGLENPTSEEIAKWIFNQLEKAGCPNLYAVEIQETCTSGCKYIKD
>NZ_CP042327.1|WP_146297516.1|58477_58744_+|hypothetical-protein
MNETDFPRILLLTSCTGEKRYKPTNPLAQSDFRLSVCDSSGTRKPRREEELAEFATPASNIYTGAQHRQAMEGVKALRQALGSQAKAV
>NZ_CP042327.1|WP_146297518.1|59092_59329_-|DUF2283-domain-containing-protein
MEKNLTFRYDKVGDILYIDVCSPYPEQESEEIADQIVARLNPQSGEVENLEVLFFSKRLEDKNPLQLPVEAALRLVDI
>NZ_CP042327.1|WP_146297520.1|59485_59752_+|BrnT-family-toxin
MDVEYDPKKAQINWQKHGVSFAEAEFVFYDPLAVHDIDPDASEEERFIALGMSSSGLLLVIVYTIRGDAFRLISARRATRQEAKAYEG
>NZ_CP042327.1|WP_146297522.1|59741_60002_+|ribbon-helix-helix-protein,-CopG-family
MRDEYDFSKGKRGPAIPSKGKTRITIYLDDEILESFRERAEARGLGYQTLINEALKAHLQNSPEQPLTESDLRRVLREELVNRTSD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP042327_1	1.1\|39282\|40\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	39282-39321	40	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39282-39321	1.0
NZ_CP042327_1	1.2\|39358\|45\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	39358-39402	45	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39358-39402	1.0
NZ_CP042327_1	1.3\|39439\|40\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	39439-39478	40	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39439-39478	1.0
NZ_CP042327_1	1.4\|39515\|38\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	39515-39552	38	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39515-39552	1.0
NZ_CP042327_1	1.5\|39589\|37\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	39589-39625	37	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39589-39625	1.0
NZ_CP042327_1	1.6\|39662\|39\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	39662-39700	39	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39662-39700	1.0
NZ_CP042327_1	1.7\|39737\|39\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	39737-39775	39	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39737-39775	1.0
NZ_CP042327_1	1.8\|39812\|42\|NZ_CP042327\|CRISPRCasFinder,CRT	39812-39853	42	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	39812-39853	1.0
NZ_CP042327_2	2.1\|52263\|35\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52263-52297	35	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52263-52297	1.0
NZ_CP042327_2	2.2\|52334\|35\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52334-52368	35	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52334-52368	1.0
NZ_CP042327_2	2.3\|52405\|35\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52405-52439	35	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52405-52439	1.0
NZ_CP042327_2	2.4\|52476\|37\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52476-52512	37	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52476-52512	1.0
NZ_CP042327_2	2.5\|52549\|37\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52549-52585	37	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52549-52585	1.0
NZ_CP042327_2	2.6\|52622\|38\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52622-52659	38	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52622-52659	1.0
NZ_CP042327_2	2.7\|52696\|38\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52696-52733	38	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52696-52733	1.0
NZ_CP042327_2	2.8\|52770\|44\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52770-52813	44	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52770-52813	1.0
NZ_CP042327_2	2.9\|52850\|42\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52850-52891	42	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52850-52891	1.0
NZ_CP042327_2	2.10\|52928\|37\|NZ_CP042327\|PILER-CR,CRISPRCasFinder,CRT	52928-52964	37	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	52928-52964	1.0
NZ_CP042327_2	2.11\|53001\|37\|NZ_CP042327\|CRISPRCasFinder,CRT	53001-53037	37	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	53001-53037	1.0
NZ_CP042327_2	2.12\|53074\|57\|NZ_CP042327\|CRISPRCasFinder,CRT	53074-53130	57	NZ_CP042327	Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence	53074-53130	1.0

1. spacer 1.1|39282|40|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ccgtaggacaagggttgaggtatgtataggttaggatggg	CRISPR spacer
ccgtaggacaagggttgaggtatgtataggttaggatggg	Protospacer
****************************************

2. spacer 1.2|39358|45|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgaatgtacatattggtctcctttgattattaatggtcaactag	CRISPR spacer
ctgaatgtacatattggtctcctttgattattaatggtcaactag	Protospacer
*********************************************

3. spacer 1.3|39439|40|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ccccgtgctagaagtcggtttaactgggactcagacagga	CRISPR spacer
ccccgtgctagaagtcggtttaactgggactcagacagga	Protospacer
****************************************

4. spacer 1.4|39515|38|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgactttaggtttatccccttgaaagacgttgataaa	CRISPR spacer
ttgactttaggtttatccccttgaaagacgttgataaa	Protospacer
**************************************

5. spacer 1.5|39589|37|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

aaatgtcagacatagtgtcctccgattgaattcatca	CRISPR spacer
aaatgtcagacatagtgtcctccgattgaattcatca	Protospacer
*************************************

6. spacer 1.6|39662|39|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtgcttgcattttaagtgacctcgaattcgtcactta	CRISPR spacer
ttgtgcttgcattttaagtgacctcgaattcgtcactta	Protospacer
***************************************

7. spacer 1.7|39737|39|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

tggtaaatggaaagataataacacttctctaaagaagaa	CRISPR spacer
tggtaaatggaaagataataacacttctctaaagaagaa	Protospacer
***************************************

8. spacer 1.8|39812|42|NZ_CP042327|CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

tagagggacactacataggaggaattaaaacttgagagagtt	CRISPR spacer
tagagggacactacataggaggaattaaaacttgagagagtt	Protospacer
******************************************

9. spacer 2.1|52263|35|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctttctccagtaattggaagccttctgtctgaa	CRISPR spacer
tcctttctccagtaattggaagccttctgtctgaa	Protospacer
***********************************

10. spacer 2.2|52334|35|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ttctagaacagtaccaaactcatcatcgctccaat	CRISPR spacer
ttctagaacagtaccaaactcatcatcgctccaat	Protospacer
***********************************

11. spacer 2.3|52405|35|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

acatatctgacgttgtagattgatgcagggactcg	CRISPR spacer
acatatctgacgttgtagattgatgcagggactcg	Protospacer
***********************************

12. spacer 2.4|52476|37|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

aagaggtcttctgttccagcctctttgtgagctttta	CRISPR spacer
aagaggtcttctgttccagcctctttgtgagctttta	Protospacer
*************************************

13. spacer 2.5|52549|37|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ttctttgggatttagacttgtgttctttttcagtcgc	CRISPR spacer
ttctttgggatttagacttgtgttctttttcagtcgc	Protospacer
*************************************

14. spacer 2.6|52622|38|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgaatttggcaatgaagtcaccagaccgctctggctt	CRISPR spacer
ctgaatttggcaatgaagtcaccagaccgctctggctt	Protospacer
**************************************

15. spacer 2.7|52696|38|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

cttagaagaccctaaggagaatggcttagctcccttta	CRISPR spacer
cttagaagaccctaaggagaatggcttagctcccttta	Protospacer
**************************************

16. spacer 2.8|52770|44|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcttagcttcctgattaactttatttacatcagcattgttgta	CRISPR spacer
ttcttagcttcctgattaactttatttacatcagcattgttgta	Protospacer
********************************************

17. spacer 2.9|52850|42|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

atccttagtcaacccatcaggggcattaatccgactaccgct	CRISPR spacer
atccttagtcaacccatcaggggcattaatccgactaccgct	Protospacer
******************************************

18. spacer 2.10|52928|37|NZ_CP042327|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

aggtttacgcgattagttagcttgatgaaatctttca	CRISPR spacer
aggtttacgcgattagttagcttgatgaaatctttca	Protospacer
*************************************

19. spacer 2.11|53001|37|NZ_CP042327|CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

tacatctgtgtgttaggcttgctagacttaatataat	CRISPR spacer
tacatctgtgtgttaggcttgctagacttaatataat	Protospacer
*************************************

20. spacer 2.12|53074|57|NZ_CP042327|CRISPRCasFinder,CRT matches to NZ_CP042327 (Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence) position: , mismatch: 0, identity: 1.0

cccctaacgagcaccagactcgatttacaggggcgaggactacttcctcatccttct	CRISPR spacer
cccctaacgagcaccagactcgatttacaggggcgaggactacttcctcatccttct	Protospacer
*********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042326

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP042327

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection