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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP035301 Salmonella enterica subsp. enterica strain ST1539 chromosome, complete genome 5 crisprs PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT 0 18 11 0
NZ_CP035302 Salmonella enterica subsp. enterica strain ST1539 plasmid pST1539, complete sequence 0 crisprs cas14j 0 0 1 0

Results visualization

1. NZ_CP035301
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035301_1 599841-599941 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035301_2 949183-949760 TypeI-E I-E
9 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035301_3 965892-966716 TypeI-E I-E
13 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035301_4 966790-967367 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035301_5 1158282-1158391 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP035301_2 2.5|949459|32|NZ_CP035301|PILER-CR 949459-949490 32 NZ_CP034699 Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence 177960-177991 1 0.969
NZ_CP035301_2 2.5|949459|32|NZ_CP035301|PILER-CR 949459-949490 32 NZ_CP034710 Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence 67131-67162 1 0.969
NZ_CP035301_2 2.11|949456|32|NZ_CP035301|CRISPRCasFinder,CRT 949456-949487 32 NZ_CP034699 Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence 177960-177991 1 0.969
NZ_CP035301_2 2.11|949456|32|NZ_CP035301|CRISPRCasFinder,CRT 949456-949487 32 NZ_CP034710 Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence 67131-67162 1 0.969
NZ_CP035301_3 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966593-966624 32 CP051275 Salmonella phage SW-37, complete genome 24295-24326 1 0.969
NZ_CP035301_3 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966593-966624 32 KC139516 Salmonella phage FSL SP-016, partial genome 43971-44002 1 0.969
NZ_CP035301_3 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966593-966624 32 JQ182729 Enterobacterial phage mEp390, complete genome 23951-23982 3 0.906
NZ_CP035301_3 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966471-966502 32 MT774487 Salmonella phage MG40, complete genome 21746-21777 6 0.812
NZ_CP035301_3 3.6|966227|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966227-966258 32 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29079 7 0.781
NZ_CP035301_3 3.6|966227|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966227-966258 32 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142294-142325 7 0.781
NZ_CP035301_3 3.8|966349|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966349-966380 32 NZ_CP054841 Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence 535406-535437 7 0.781
NZ_CP035301_3 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966471-966502 32 JQ288021 Salmonella phage SPN3UB, complete genome 39452-39483 7 0.781
NZ_CP035301_3 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966471-966502 32 MH370364 Salmonella phage S107, complete genome 29959-29990 7 0.781
NZ_CP035301_3 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966471-966502 32 MH370382 Salmonella phage S135, complete genome 29959-29990 7 0.781
NZ_CP035301_3 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966471-966502 32 MH370383 Salmonella phage S137, complete genome 29959-29990 7 0.781
NZ_CP035301_4 4.1|966819|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966819-966850 32 NZ_CP013929 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence 188177-188208 7 0.781
NZ_CP035301_4 4.1|966819|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966819-966850 32 CP013931 Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence 192938-192969 7 0.781
NZ_CP035301_4 4.1|966819|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966819-966850 32 NC_019394 Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence 188204-188235 7 0.781
NZ_CP035301_2 2.9|949334|32|NZ_CP035301|CRISPRCasFinder,CRT 949334-949365 32 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 135469-135500 8 0.75
NZ_CP035301_2 2.9|949334|32|NZ_CP035301|CRISPRCasFinder,CRT 949334-949365 32 NZ_CP031801 Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence 11654-11685 8 0.75
NZ_CP035301_3 3.7|966288|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966288-966319 32 NZ_CP016179 Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence 203354-203385 8 0.75
NZ_CP035301_4 4.2|966880|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966880-966911 32 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8893 8 0.75
NZ_CP035301_4 4.2|966880|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966880-966911 32 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151600-151631 8 0.75
NZ_CP035301_4 4.8|967246|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 967246-967277 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
NZ_CP035301_3 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966105-966136 32 MT162468 Synechococcus phage S-H25, complete genome 69929-69960 9 0.719
NZ_CP035301_3 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966471-966502 32 MK448228 Klebsiella phage ST15-VIM1phi2.1, complete genome 32866-32897 9 0.719
NZ_CP035301_2 2.6|949520|32|NZ_CP035301|PILER-CR 949520-949551 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
NZ_CP035301_2 2.12|949517|32|NZ_CP035301|CRISPRCasFinder,CRT 949517-949548 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
NZ_CP035301_2 2.15|949700|32|NZ_CP035301|CRISPRCasFinder,CRT 949700-949731 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
NZ_CP035301_3 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966105-966136 32 LN681539 Clostridium phage phiCD505, complete genome 8933-8964 10 0.688
NZ_CP035301_3 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966105-966136 32 JX145341 Clostridium phage phiMMP02, complete genome 8932-8963 10 0.688
NZ_CP035301_3 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966105-966136 32 NC_011398 Clostridium phage phiCD27, complete genome 8924-8955 10 0.688
NZ_CP035301_3 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966105-966136 32 NC_048642 Clostridium phage CDKM9, complete genome 8871-8902 10 0.688
NZ_CP035301_3 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966105-966136 32 KX228400 Clostridium phage CDKM15, complete genome 9066-9097 10 0.688
NZ_CP035301_3 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 966593-966624 32 NZ_AP022571 Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence 153476-153507 10 0.688
NZ_CP035301_4 4.9|967307|32|NZ_CP035301|CRISPRCasFinder,CRT 967307-967338 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NZ_CP035301_4 4.9|967307|32|NZ_CP035301|CRISPRCasFinder,CRT 967307-967338 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
NZ_CP035301_2 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 949212-949243 32 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1885546-1885577 11 0.656
NZ_CP035301_2 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 949212-949243 32 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 56201-56232 11 0.656
NZ_CP035301_2 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 949212-949243 32 NZ_CP040822 Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence 83399-83430 11 0.656
NZ_CP035301_2 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 949212-949243 32 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1487158-1487189 11 0.656
NZ_CP035301_2 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT 949212-949243 32 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 597699-597730 11 0.656
NZ_CP035301_2 2.3|949334|35|NZ_CP035301|PILER-CR 949334-949368 35 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 135466-135500 11 0.686

1. spacer 2.5|949459|32|NZ_CP035301|PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 2.5|949459|32|NZ_CP035301|PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 2.11|949456|32|NZ_CP035301|CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

4. spacer 2.11|949456|32|NZ_CP035301|CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

5. spacer 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacgttcggcgatgttggccccatcggtccg	Protospacer
*******************************.

6. spacer 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacattcggcgatgttggccccatcggtcca	Protospacer
****.***************************

7. spacer 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ctacgttcggtgatgttggccccataggtcca	Protospacer
*.********.************** ******

8. spacer 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgg	Protospacer
 .  **********************  ****

9. spacer 3.6|966227|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

10. spacer 3.6|966227|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

11. spacer 3.8|966349|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

12. spacer 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  *** 

13. spacer 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  *** 

14. spacer 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  *** 

15. spacer 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  *** 

16. spacer 4.1|966819|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**  

17. spacer 4.1|966819|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**  

18. spacer 4.1|966819|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**  

19. spacer 2.9|949334|32|NZ_CP035301|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  . 

20. spacer 2.9|949334|32|NZ_CP035301|CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.** 

21. spacer 3.7|966288|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gaggcgtac-----aggctgttagatgagaaattacc	CRISPR spacer
-----atactaataaggctgtttgatgcgaaattacc	Protospacer
     .***     ******** **** *********

22. spacer 4.2|966880|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *. 

23. spacer 4.2|966880|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *. 

24. spacer 4.8|967246|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  . 

25. spacer 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

ttgcag----ggcgatattgttgttggtgaatggga	CRISPR spacer
----aacactgacgatattattgttggtgattgggg	Protospacer
    *.    *.*******.********** ****.

26. spacer 3.10|966471|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
tgagttcatccggcactaccggcgctggatgc	Protospacer
   ******* ************.**   ** 

27. spacer 2.6|949520|32|NZ_CP035301|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

28. spacer 2.12|949517|32|NZ_CP035301|CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

29. spacer 2.15|949700|32|NZ_CP035301|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*  

30. spacer 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

31. spacer 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

32. spacer 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

33. spacer 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

34. spacer 3.4|966105|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

35. spacer 3.12|966593|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
actcgttcggcgatgtggcccccatccaggtg	Protospacer
 * ************* * ******* .  ..

36. spacer 4.9|967307|32|NZ_CP035301|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

37. spacer 4.9|967307|32|NZ_CP035301|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

38. spacer 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

39. spacer 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

40. spacer 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgactcgatcgccttccagaccaaccttctgg	Protospacer
.   .***** ************ ****.  .

41. spacer 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

42. spacer 2.1|949212|32|NZ_CP035301|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

43. spacer 2.3|949334|35|NZ_CP035301|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 11, identity: 0.686

ccgcgtcactttctgacattttattcagttcgtta	CRISPR spacer
agaattcactatcagacattttattcagttctgcc	Protospacer
  .  ***** ** *****************  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1132135 : 1229067 88 Salmonella_phage(84.0%) plate,portal,transposase,tail,capsid,integrase,head,lysis,terminase,tRNA attL 1165975:1166021|attR 1200009:1200055
DBSCAN-SWA_2 1267409 : 1312415 56 Salmonella_phage(46.15%) plate,tail,integrase,holin,lysis attL 1259276:1259291|attR 1290851:1290866
DBSCAN-SWA_3 1679922 : 1709515 32 Salmonella_phage(38.46%) tail,protease,holin NA
DBSCAN-SWA_4 1781567 : 1790738 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_5 1859046 : 1869552 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_6 1955546 : 2006296 69 Salmonella_phage(89.06%) plate,portal,protease,tail,capsid,integrase,head,holin,lysis,terminase attL 1950124:1950138|attR 1966600:1966614
DBSCAN-SWA_7 2110340 : 2117149 11 Salmonella_phage(33.33%) integrase,tail attL 2112550:2112572|attR 2122265:2122287
DBSCAN-SWA_8 2905635 : 2990375 92 Salmonella_phage(44.44%) portal,protease,tail,integrase,holin,lysis,terminase,tRNA attL 2929729:2929748|attR 3001521:3001540
DBSCAN-SWA_9 3054541 : 3063273 7 Enterobacteria_phage(14.29%) protease,transposase NA
DBSCAN-SWA_10 4440717 : 4486032 60 Salmonella_phage(72.55%) plate,portal,protease,tail,capsid,integrase,head,holin,tRNA attL 4438961:4438976|attR 4454061:4454076
DBSCAN-SWA_11 4511877 : 4532297 26 Burkholderia_phage(45.0%) plate,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP035302
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 71819 : 81115 11 Escherichia_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage