CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP039379	Pediococcus pentosaceus strain SL001 plasmid pSL001-1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP039378	Pediococcus pentosaceus strain SL001 chromosome, complete genome	3 crisprs	WYL,csn2,cas2,cas1,cas9,DEDDh,cas3,csa3,DinG	0	11	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039378_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039378_1

239435-239540

Orphan

Consensus_repeat	Method
CAGATGCTCTACCAACTGAGCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP039378_1

>merge|NZ_CP039378|1|239435-239540|CRISPRCasFinder
CAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAA

>NZ_CP039378|1|1|239435-239540|CRISPRCasFinder
CAGATGCTCTACCAACTGAGCTAA	CGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGG
CAGATGCTCTCCCAACTGAGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039378.1\|WP_029257840.1\|251879_254099_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_CP039378.1\|WP_023440211.1\|251486_251675_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039378.1\|WP_069825221.1\|254153_254516_-\|DUF1634-domain-containing-protein	unknown	unknown	gnl\|CDD\|377927
NZ_CP039378.1\|WP_146419326.1\|224566_225406_+\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_CP039378.1\|WP_146419334.1\|248504_249278_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP039378.1\|WP_146419330.1\|233584_234775_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP039378.1\|WP_002833897.1\|245125_246160_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP039378.1\|WP_146419332.1\|235748_237482_-\|pyruvate-oxidase	unknown	unknown	gnl\|CDD\|213733
NZ_CP039378.1\|WP_002833901.1\|249350_251075_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP039378.1\|WP_146419329.1\|231433_231997_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377744
NZ_CP039378.1\|WP_146419333.1\|247239_248415_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340844
NZ_CP039378.1\|WP_002833746.1\|228045_230463_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP039378.1\|WP_002833902.1\|251074_251341_-\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NZ_CP039378.1\|WP_002833747.1\|226156_227842_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP039378.1\|WP_146419331.1\|234947_235679_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039378.1\|WP_011673185.1\|232043_233510_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP039378.1\|WP_146419328.1\|230808_231441_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP039378.1\|WP_002833898.1\|246173_247190_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP039378.1\|WP_146419327.1\|225428_226148_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP039378.1\|WP_146419335.1\|254515_255361_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|376667

Protein	Function_ID	Function_description	E-value
NZ_CP039378.1\|WP_029257840.1\|251879_254099_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP039378.1\|WP_069825221.1\|254153_254516_-\|DUF1634-domain-containing-protein	gnl\|CDD\|377927	pfam07843, DUF1634, Protein of unknown function (DUF1634). This family contains many hypothetical bacterial and archaeal proteins. A few members of this family are annotated as being putative transmembrane proteins, and the region in question in fact contains many hydrophobic residues.	3.05549e-28
NZ_CP039378.1\|WP_146419326.1\|224566_225406_+\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.40886e-76
NZ_CP039378.1\|WP_146419334.1\|248504_249278_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.97929e-25
NZ_CP039378.1\|WP_146419330.1\|233584_234775_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP039378.1\|WP_002833897.1\|245125_246160_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.50457e-33
NZ_CP039378.1\|WP_146419332.1\|235748_237482_-\|pyruvate-oxidase	gnl\|CDD\|213733	TIGR02720, Pyruvate_oxidase, pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. [Energy metabolism, Aerobic].	0
NZ_CP039378.1\|WP_002833901.1\|249350_251075_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP039378.1\|WP_146419329.1\|231433_231997_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	1.87997e-73
NZ_CP039378.1\|WP_146419333.1\|247239_248415_-\|glycosyltransferase	gnl\|CDD\|340844	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	3.52112e-136
NZ_CP039378.1\|WP_002833746.1\|228045_230463_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP039378.1\|WP_002833902.1\|251074_251341_-\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	1.69391e-54
NZ_CP039378.1\|WP_002833747.1\|226156_227842_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.23891e-136
NZ_CP039378.1\|WP_002833898.1\|246173_247190_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.79241e-34
NZ_CP039378.1\|WP_146419328.1\|230808_231441_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.53968e-52
NZ_CP039378.1\|WP_011673185.1\|232043_233510_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.50566e-64
NZ_CP039378.1\|WP_146419327.1\|225428_226148_-\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	8.81456e-88
NZ_CP039378.1\|WP_146419335.1\|254515_255361_-\|TSUP-family-transporter	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	8.30056e-35

>NZ_CP039378.1|WP_146419332.1|235748_237482_-|pyruvate-oxidase
MTEKINASDAMIKVLESWGVHNVYGLPGGSFDSTMNALYNRKSTINYVQVRHEEVGALAAVGEAKVTGKLGVTFGSAGPGAVHLLNGLYDAKHDHMPVLALVGQVPTTLMNTDYFQELNENPIFTDVAVYNRTVMTAEQMPHVVDEAIRQAYKYSGVAVVTIPKDLGWQPIEDNYVSSANLYQAPILPEPDVKQVDEALEILSNAKHPVMYIGQGTRGAGSDIIALSEKLHIPIVTSALAKGIVPDSYKANMGSAGRVATKPGVEVLQAADAVMFVGSDFPFQPYFVAPDAKYIQVDIDASKFGRRHVVDLAILADSRKFLKVMLEKAETTAESKWYKAALENKKNWEEWKNSFVGQQDTPLNVENVFAKINALATDDAIFQVDVGNVTIDGMRFLKADQAQRFTTSGWYATMGYALPAAIGAQAEYPDRQVWSISGDGGYAMVMQDVLTQVKYHMPIINVILTNESLGFIEAEQDDSKQPHSGVDLIDADYGTSAQALGAEGFEVRTYDELEQAFEKAKDRKGPVVIDVKITNLRPLPVEQLLLDKETQDPEAVEQFVKKYHAESLIPFRKLLEEA
>NZ_CP039378.1|WP_146419331.1|234947_235679_+|hypothetical-protein
MNKINLPKFNYPIEKKSYLPAINALLLSVVPWYLSSHFSSEIFSKHLSIQILFFLATFMVNFLTIDRLTNKTNLRLMAPLAIIPILTFIILLFSENTYVALLGLLSFVPFLTTFLPFEQKNGVGLLTFSLSVGTLAPLAFFYIRNGFVTSILLKMGLLLSLMIIIILFAIFIKTSFKFAIFALALTLIITIFAFILLKSWTALIYPILAVFSWFIPKLHLPRNFTLLVLIALIGLASFFMTIN
>NZ_CP039378.1|WP_146419330.1|233584_234775_-|methionine-adenosyltransferase
MSERHLFTSESVSEGHPDKIADQISDSILDELLKNDPDARVACETTVTTGLVVVVGEISTTAYIDIQKVVRKTIKDIGYVGGEYGFDGENCAVIVAIDEQSPDIAQGVDDSLETREGHEDRLNQIGAGDQGLMFGYATNETEELMPLPIMLSHHLMQRIAKLRKEQVISYLRPDAKAEVTVEYDDNDHPVRVDTVVLSTQHDPDVTLERIRQDVIEQVIKAVIPATLLDENTNFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGAARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAKLAERVEVQIAYAIGVAEPVSVMVDTFGTGTVSEEKLTQAVRKIFDLRPAGIIEMLDLKRPIYKQTAAYGHFGRTDVELPWEKTDKVEALNDFFKN
>NZ_CP039378.1|WP_011673185.1|232043_233510_-|MFS-transporter
MEKKQTNVVVVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVSLMNWVISIFLLTNAIFTPIYGKLSDIFGRKRVFIFGIIIFLIGSMLSGMAHSMGFLILWRALQGIGAGSIMPVSNTIIADIYPIEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNLSWHWIFFINLPIGIITIFLIQFFLKEEVSVHSKKIDYLGSFWLMVALLGLMYGFQLMGESSFSWITLVISFVIFIVGAGLFIRQEKRAEDPIIFLDLFNNRTFVIQNVATMLVSGLLIGFEVYLPSWTQGILGVPASLAGFAVTPSSILWIFGSFLAGRMIVKLKANQILTISLSILAVGSLLLALVPASTPFLAFFFIAAILGVGFGITITSTLVISQQLVTKDRIGVATSFNTLAKTLGQTIMMSVFGIIMNGTMNAGVKANPKINMDMMNKVINPQTAKTLPETLLPTLRNVLYQALHNIYIGCFILIVVALIINAFDRRSKDNI
>NZ_CP039378.1|WP_146419329.1|231433_231997_+|methyltransferase-domain-containing-protein
MLDNAMQYSHQLLTEIVQPGDVVIDATMGNGHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFEHQHQPLTNVELIHASHDQIDHYVTEPITGAIFNLGYLPGGDKSIITHPTSTISAAQQSLNQLKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQHHYSCLRYEFINQINNPPILLCIERKK
>NZ_CP039378.1|WP_146419328.1|230808_231441_+|phosphatase-PAP2-family-protein
MHSRKYTHLLINILPTLLFILIVSLVIFKPSWAHAYDNSISSLVQSVRTPGFNQVVSIYTQLGNSIPYIIISLIVCLILILKHLKKAALFLACNIVLGNGLNHLIKQIIQRQRPEFRLISIGGYSFPSGHSVAAMVLFGSLIFITFQVVHHQLKRNLLALIYLILMLGIGLSRIYLNVHFPTDVTAGFLLGLIVLQFTTYLFYGRKIKNA
>NZ_CP039378.1|WP_002833746.1|228045_230463_-|leucine--tRNA-ligase
MAYNHKDIEQKWQQFWSDNETFKTVEDADKPKYYALDMFPYPSGQGLHVGHPEGYTATDIMSRMKRMQGYKVLHPMGWDAFGLPAEQYAMKTGNNPRDFTAKNIQNFKRQIQSLGFSYDWSREVNTTDPAYYKWTQWIFEQLYKKGLAYEKETLVNWAPDLMGGTVVANEEVVDGKTERGGFPVYRKPMKQWILKITAYADRLIDDLDLVDWPDSIKEMQKNWIGRSVGASVFFNVEDSEKQIEVFTTRPDTLFGATYLVISPEHDLVDQITTPESKAAVEEYKKAVATKSDLERTDLNKDKTGVFTGAYAVNPVNGKKIPVWISDYVLASYGTGAVMAVPAHDGRDYEFAKKFKIDMVPVYEGGNLEDGVLDSEGGLINSGFLDGMDKQTAIDTMISWLEEHGVGHKKVNYRLRDWVFSRQRYWGEPIPVIHWEDGETTLIPEDELPLRLPAATDIRPSGTGESPLANLDDWVNVVDENGRKGRRETNTMPQWAGSSWYFLRYVDPKNDQKIADEDLLKEWLPVDLYVGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLVNQGMILGSNHEKMSKSKGNVVNPDDIVERFGADTLRLYEMFMGPLTESVAWSEDGLNGSRKWIDRVWRLMIDDENQLRDHIVTENDGSLDMIYNQTVKKVTDDYENMRFNTAISQMMVFVNEAYKADKLPAVYMEGLVKMLAPIIPHVAEELWSLLGHEGGISYAEWPTYDESKLVEATVQVILQVNGKVRSKITVDKDIAKEELEKLALADAKIQQWTADKTVRKVIVIPNKIVNIVVG
>NZ_CP039378.1|WP_002833747.1|226156_227842_-|polysaccharide-biosynthesis-protein
MDKQSEMDNSESLYMGSQPLRDNSGKSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVIWFGVYSDQANALFTKGYNIYSFFLIAAIAGIPSAISKQVSHYNAINEFALGQRLYKRGLLLSVGTGIICAAILYFGAPFLKDGDPNVITVLHALAWAVLVIPTMSLTRGFFQGYQEMGPSAVSQFIEQLARVIYMLTTAYFIMGKSGQGDWVYGVSQSTFAAFIGALGGLLVLGIYFIKYRKRLSYLSQHSANELVVSTSTLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMNAVSDYSTAVLNNMYAIFAFNANKLVMIVISLASAMAVTSVPILSEAKTRGDRAEISRQVTDSILLFAFLMIPAALGMAAVAQPAYTLFYHLSDVGTAILQFNSYVAIVLGLFTVISAIMQGIGENVLAVKYFCVGMIVKFIFQFPMVALFSAVGSLISTAIGFMVVNWLILRHINLEYGLDYRRINTFIGKIITYAFGTFLIAMVVTNGLYIVMDPASKVQSLLVIAAAVVLGGAFYLYFVLKSRLADEIVGARAAGLRRMLKIS
>NZ_CP039378.1|WP_146419327.1|225428_226148_-|pseudouridine-synthase
MRVDKFLHDMNMGTRTQIRKMIKDKLIFVNDTIVKTGRVKVDPVVDEVRLKDQVIEYQQYFYFMMNKPLGVLTATEDRKQKTVMDLFNKVDLRSDLFPVGRLDKDTQGLLLITNNGQLAHDLLAPERHVDKTYEAVVTGKITDQAVEEFQKGITLKDGTTLKPAQLIIEHYSELDDQTVVKVILKEGKYHQVRRMFGSLGEKVVTLRRTSFGPLELDVGLLPGTYRELTDDEINRLVEG
>NZ_CP039378.1|WP_146419326.1|224566_225406_+|NAD(P)H-hydrate-dehydratase
MLKINQDGLNDLWPVRSNDSHKGSYGRILIVAGNDQYGGAGILSSSAAVYAGGGLVTLATDKSNFTAVRSTLAEVMLLDFLDFDALKAALKKSTGVVIGPGLGTNATSLKILKLVLDHVQPQTPLVIDGSAIDLIATHQIQVDHPQTIFTPHQMEWQRLSGIKIADQAPTLNQRAVDHLKAIVVLKHYETEIYAPHTDFRQIMAGNPGMATGGSGDALTGVIIALVNQVDSLALGVTLGTFLHSYTADQIYQKEAVVLPHRLIRRLPFTLKQLQKNKLL
>NZ_CP039378.1|WP_002833897.1|245125_246160_-|flippase-like-domain-containing-protein
MSRRNKVVLAVMILAGIIIFGFSLRNVNLNQMARDVVHLNMWWLLVALGCIVLYLGLEAVATKMLIQSNGDRLSWRDAIRIPLIEQLFNGITPFSSGGQPAQLVALMQNGIEGGRASSVLLMKFVVFQSMVVINFIFSLLIGFQYLEEKIRFLSWFVLFGFLIHLAVIIGLLMIMYWHNFTKRLISAIFIPIKHFVSKERYTTWKVTLNEKVDSFYQESVRMKSQWRLLAKVALVTFLQLLFYYLIPYFILLALGKSDVNIVMVTCLHVLIFMVISLFPIPGGAGGAEYGFSVIFAQFVGNNSKLVLAMMIWRILTYYFGMFAGMVATVVKPHKVNRVKVVKNE
>NZ_CP039378.1|WP_002833898.1|246173_247190_-|glycosyltransferase-family-4-protein
MPIKVNMFSSASKVKGQGVGSAYEELIRLLKTHFPKQIDVSINKFTKADISHYHTIDPNFYLSTFSKKRGIKVGYVHFLPETIEGSLNIPQPFRSIFYKYIISFYKRMDHIVVVNPTFIDKLVAYGISRDIITYIPNFVRKNEFYRFTEANRDAVRERLEVNNRFTVLGIGQVQERKGVKDFIKLAENNPDKYFIWAGGFSFGRLTDGYADLKQVVDNPPRNLKFTGIVDRNALVEYYNAADLFLLPSYNELFPMSVLEAFSCGVPVMLRDLELYHSIIKGYYIPTQDYEDMNTQLKLVSEDKERLNKFKQLSDEASEEYSEDHLADIWLDFYSSLTK
>NZ_CP039378.1|WP_146419333.1|247239_248415_-|glycosyltransferase
MNIGLFTDTYFPQVSGVATSIKTLRDQLEKQGHQVYIFTTTDPKVDTNVYERNIFRFTSVPFVSFTDRRIAVSGFIRAAQLAKELNLDIVHTQTEFSLGWMGKFVAKSLKIPLIHTYHTMYEDYLHYVANGKLLKPYHVKQMTRAFCYHIDGIVAPSERVLDTIEGYGINVPIRVIPTGVNLEQYQKPNKRKQWREKLGYDESSPILLSLSRLAYEKNIQEVIDSFPAILKEVPNAQLLIVGDGPARASLENQVHDLHLEDSVQFTGEINNDHVYGFYQLADLFVSASDTESQGLTYIEALASNLKVVAKSGPYTDELLDDISLGKVFNTEEQLVAAIKDYIEHPDAYNDPAPREKKLYEISADYFGKQVVDYYSSAISTYTDLELDEDSE
>NZ_CP039378.1|WP_146419334.1|248504_249278_-|alpha/beta-fold-hydrolase
MKLKLKSGAQIFFEDEGQGTPILFLTGFGGNTEIWSGQVNFFLQRGYRVIRLDYLNHGQSDRVDGELQTGDLADEVLQLVDYLQLKEPIGIGNSMGAAVLWNIINLRGWDFLNKAIFVDQSPKMLNDQQWYLGFKNLAEDNFDEVMNEPIVRPAYKHIDDFVFKNSKAIDSAYPFSQPRNRALVKGHAKKDWRFVLEQATKPVLFIMGEKSPFFDSTRTAELSALNANITVNIMKNVGHIPMAEDPTEFNRLVLQFV
>NZ_CP039378.1|WP_002833901.1|249350_251075_-|phosphoenolpyruvate--protein-phosphotransferase
MAGTLKGIAASDGIAIAKAYLMVDPDLSFEKKNITDVDAEIKRLHDALEKSKEELSLIKAKAAENLGAEEAEVFEAHLTILSDPELIGNIEDKIKNDTINAEEATKEVTDNFISMFEAMTDNAYMQERAADIRDVTKRLMSHLLGVELPNPALIDSEVVIVAHDLTPSDTAQLDRRYVKGFITDIGGRTSHSAIMSRTLEIPAVVGSEKATTSVKQGEMMIVDGLTGDAIIAPTDDEIKAYQQKGEEFKAQKAEWEKLKNEKTVSKDGVHFDLAANIGTPDDLQGVLDNGGEAVGLFRSEFLYMNASELPSEDEQFEAYKKVVEGMNGKQVVVRTMDIGGDKELPYLPLPEEMNPFLGYRAIRISLDRTDLFRTQLRALLRASAFGKLAIMFPMIATVAEFKKARAIYDDERQKMVDAGQEVGEIQVGMMMEIPAAAMIADKLAKYVDFFSIGTNDLIQYSFAADRGNEKVSYLYQPYNPSLLRLIKQTIDASHAEGKWTGMCGEMAGDQIAVPILMGLGLDEFSMSATSILKTRSLMKKLTTDDMKKLAEKAVTEAETNEDVIKLVQETVDNI
>NZ_CP039378.1|WP_002833902.1|251074_251341_-|phosphocarrier-protein-HPr
MEKRDFHVIAETGIHARPATLLVQSASKFNSDIQLTYKDKSVNLKSIMGVMSLGVGQGADVTISADGDDEADAIAALEDTMKKEGLSD
>NZ_CP039378.1|WP_023440211.1|251486_251675_-|hypothetical-protein
MRDYLQLLNDLKDGSIKELKITAEEFQDFQPRFMEFPERKQVIGKADRGGVVVYHFERIKDK
>NZ_CP039378.1|WP_029257840.1|251879_254099_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MLCQNCQKNEASIHLYTNVNGQRTEVNLCQNCYQLLKNQRNNNINRNGGARMAQDPFGFGNLDDIFRAMQGGNMGQPENLYGQQVPPTQPGGGNGSGGNPNNRGNGGSLLSQYGLNLTDLAKQGKIDPVIGRDSEIERVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQRIVEGSVPQKLVNKQIVRLDVVSLVQGTGIRGQFEQRMQQLMKEVQANKDMVVFIDEIHEIVGAGNAEGGMDAGNVLKPALARGDFQLVGATTLKEFRDIEKDAALARRLQPVQVDEPSEEEAIKILKGIQKKYEDYHHVHYTDDAIEAAVKLSKRYIQDRFLPDKAIDLLDEAGSKKNLTINIADPETIQKKIDEAEAQKKAALQSEDYEKAAYYRDQVSKLEKNKDGATSSEEQPTVTEEDMEKIIETKTDIPVGDLQKQEQEQLQNLSENLKDHVIGQDEAVDKISRAIRRNRIGLNGTGRPIGSFLFVGPTGVGKTELAKQLAQQLFGSKDSMIRFDMSEYMEPHSISKLIGSPPGYVGYEEAGQLTEQVRRHPYSLVLLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGTGDVQADVGFGAAAQGKTHSVLDKLGNYFKPEFLNRFDDIVEFQALTKENLMQIVDLMIADVNSMLATQGLHVDVTKPVEERLVDLGYNPKMGARPLRRVIQEQIEDRIADFYLDHPAEKQLNAKIKDDQIEITGAPKKD
>NZ_CP039378.1|WP_069825221.1|254153_254516_-|DUF1634-domain-containing-protein
MNAKKQEMQHVELVIGRVLQVGVYISALVILLGIGLWLFKNGSGYSGALPTRITPIFHGVLAFKPYAVLMFGIFLLILTPVLRVIVSIYAFTKEGDRLYVVITTIVLVILIIGMAIGYRG
>NZ_CP039378.1|WP_146419335.1|254515_255361_-|TSUP-family-transporter
MTSHLIILLLVGLMAGIFGAILGIGGGMIITPVLTVAMGLDIKYAIGASIIAVIATSSGATIAYLKDEMLNLRVAMFLEIATTVGAIVGAIMTGIFNSTVLFVLFGSFLVFSSWNMYRKLRRGGGEEGSTKNDRLANQLNLNGSYYDKALKKNVDYQVENVPGGSAVMFGAGLASGLLGIGSGAFKVMAMDNIMKMPLKPSSATSNLMMGVTAAASAMVYFFNGSIHADIAGPLAIGILFGAQLGSRIMQHLQPRWIRMIFIPVLLYMGLQMILKGFGVNI

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Crispr_ID: NZ_CP039378_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039378_2

331449-332870

TypeII

Consensus_repeat	Method
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	PILER-CR
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CRISPRCasFinder
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CRT

21 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP039378_2

>merge|NZ_CP039378|2|331449-332870|PILER-CR,CRISPRCasFinder,CRT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTCATTCCAGATTCTTTTACCTCTTTGACAAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTATCCCACCTTTACCCATTTGTTATTGATGGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACAATAGTTGCAGCGCTAACCATATTCTTAGCGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACATCGGGAAGCTTGCCTTGGAACCAATAATTGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACCTATCGAAAATTCTGAAATCACCGAACTACGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACCAGTTATGAAAATATGCAGCCGTATTTAGAGGGCTTAACCTTATTGATTTAACATCCTTCTAAAACAGGGCAATGTACCACTTGAAAACACCATCGGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTAGATGATACAGAAGTGTACATTCCTACACGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTTAACCGAGGATCAAAGGCGCGAACGATTGAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACGTGCAATTGTTAATGGAGAAGATGGCACTGGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTGCACGACGTTTTAATGGTCATTGCTAAAAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACCAACTAATCAAAGTATCTCATTAACTGGTAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTCTTAGTCCAAATAAAAGCTGATTTACTTAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACACACCGAAGATGATTTAAAAACGCTATTGGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACCAAATTTTTGGCCTTTCAAATCGTTACGGAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTTTAGTACCTTCCTCTACTTTTACCTCTGTGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTCCTGCTACTGGTGGTGGTTATAATGACCAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTTGGTACACGCATATTATTTTGTTTCTTTTGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACTAAAAAAGGCGGGTTCAGTGACGAAGCTAGGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACCAACGGTGCGGTCACATGGGATAGTATCAAGGGTTTAACCTTATTGATTTAACATCCTTCTAAAACCCACAAGCTAGATAACATCTCCGAAATTGTGGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC

>NZ_CP039378|2|1|331449-332870|PILER-CR
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCATTCCAGATTCTTTTACCTCTTTGACAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TATCCCACCTTTACCCATTTGTTATTGATG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	AATAGTTGCAGCGCTAACCATATTCTTAGC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	ATCGGGAAGCTTGCCTTGGAACCAATAATT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CTATCGAAAATTCTGAAATCACCGAACTAC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAGTTATGAAAATATGCAGCCGTATTTAGA
GGGCTTAACCTTATTGATTTAACATCCTTCTAAAAC	AGGGCAATGTACCACTTGAAAACACCATCG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TAGATGATACAGAAGTGTACATTCCTACAC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTAACCGAGGATCAAAGGCGCGAACGATTGA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	GTGCAATTGTTAATGGAGAAGATGGCACTG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TGCACGACGTTTTAATGGTCATTGCTAAAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAACTAATCAAAGTATCTCATTAACTGGTA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCTTAGTCCAAATAAAAGCTGATTTACTTA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	ACACCGAAGATGATTTAAAAACGCTATTG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAAATTTTTGGCCTTTCAAATCGTTACGGA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTTAGTACCTTCCTCTACTTTTACCTCTGT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCCTGCTACTGGTGGTGGTTATAATGACCA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTGGTACACGCATATTATTTTGTTTCTTTT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TAAAAAAGGCGGGTTCAGTGACGAAGCTAG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAACGGTGCGGTCACATGGGATAGTATCAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CCACAAGCTAGATAACATCTCCGAAATTGT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC

>NZ_CP039378|2|2|331449-332870|CRISPRCasFinder
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCATTCCAGATTCTTTTACCTCTTTGACAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TATCCCACCTTTACCCATTTGTTATTGATG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	AATAGTTGCAGCGCTAACCATATTCTTAGC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	ATCGGGAAGCTTGCCTTGGAACCAATAATT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CTATCGAAAATTCTGAAATCACCGAACTAC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAGTTATGAAAATATGCAGCCGTATTTAGA
GGGCTTAACCTTATTGATTTAACATCCTTCTAAAAC	AGGGCAATGTACCACTTGAAAACACCATCG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TAGATGATACAGAAGTGTACATTCCTACAC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTAACCGAGGATCAAAGGCGCGAACGATTGA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	GTGCAATTGTTAATGGAGAAGATGGCACTG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TGCACGACGTTTTAATGGTCATTGCTAAAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAACTAATCAAAGTATCTCATTAACTGGTA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCTTAGTCCAAATAAAAGCTGATTTACTTA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	ACACCGAAGATGATTTAAAAACGCTATTG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAAATTTTTGGCCTTTCAAATCGTTACGGA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTTAGTACCTTCCTCTACTTTTACCTCTGT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCCTGCTACTGGTGGTGGTTATAATGACCA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTGGTACACGCATATTATTTTGTTTCTTTT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TAAAAAAGGCGGGTTCAGTGACGAAGCTAG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAACGGTGCGGTCACATGGGATAGTATCAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CCACAAGCTAGATAACATCTCCGAAATTGT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC

>NZ_CP039378|2|1|331449-332870|CRT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCATTCCAGATTCTTTTACCTCTTTGACAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TATCCCACCTTTACCCATTTGTTATTGATG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	AATAGTTGCAGCGCTAACCATATTCTTAGC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	ATCGGGAAGCTTGCCTTGGAACCAATAATT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CTATCGAAAATTCTGAAATCACCGAACTAC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAGTTATGAAAATATGCAGCCGTATTTAGA
GGGCTTAACCTTATTGATTTAACATCCTTCTAAAAC	AGGGCAATGTACCACTTGAAAACACCATCG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TAGATGATACAGAAGTGTACATTCCTACAC
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTAACCGAGGATCAAAGGCGCGAACGATTGA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	GTGCAATTGTTAATGGAGAAGATGGCACTG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TGCACGACGTTTTAATGGTCATTGCTAAAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAACTAATCAAAGTATCTCATTAACTGGTA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCTTAGTCCAAATAAAAGCTGATTTACTTA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	ACACCGAAGATGATTTAAAAACGCTATTG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAAATTTTTGGCCTTTCAAATCGTTACGGA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTTAGTACCTTCCTCTACTTTTACCTCTGT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TCCTGCTACTGGTGGTGGTTATAATGACCA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TTGGTACACGCATATTATTTTGTTTCTTTT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	TAAAAAAGGCGGGTTCAGTGACGAAGCTAG
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CAACGGTGCGGTCACATGGGATAGTATCAA
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	CCACAAGCTAGATAACATCTCCGAAATTGT
GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039378.1\|WP_146419389.1\|343010_343325_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212144
NZ_CP039378.1\|WP_146419387.1\|340713_341160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039378.1\|WP_146419379.1\|326004_326517_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP039378.1\|WP_146419378.1\|322854_324477_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350691
NZ_CP039378.1\|WP_146419384.1\|332898_333570_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP039378.1\|WP_158632725.1\|322529_322640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039378.1\|WP_146419383.1\|330463_331306_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP039378.1\|WP_146419391.1\|345380_346043_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039378.1\|WP_146419390.1\|343553_344723_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277347
NZ_CP039378.1\|WP_146419382.1\|330158_330410_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP039378.1\|WP_146419385.1\|333849_334755_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP039378.1\|WP_146419380.1\|326513_327365_-\|sialate-O-acetylesterase	unknown	unknown	gnl\|CDD\|377084
NZ_CP039378.1\|WP_158632719.1\|327459_330045_-\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|378760
NZ_CP039378.1\|WP_146419386.1\|334963_339073_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP039378.1\|WP_146419375.1\|319928_321083_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP039378.1\|WP_087069523.1\|333566_333872_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP039378.1\|WP_158632720.1\|341358_343011_+\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NZ_CP039378.1\|WP_158632721.1\|344995_345157_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039378.1\|WP_146419377.1\|322114_322540_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039378.1\|WP_146419376.1\|321730_321961_+\|excisionase-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935

Protein	Function_ID	Function_description	E-value
NZ_CP039378.1\|WP_146419379.1\|326004_326517_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.19276e-09
NZ_CP039378.1\|WP_146419378.1\|322854_324477_+\|AAA-family-ATPase	gnl\|CDD\|350691	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins. RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.86841e-13
NZ_CP039378.1\|WP_146419384.1\|332898_333570_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.62821e-94
NZ_CP039378.1\|WP_146419383.1\|330463_331306_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.04741e-139
NZ_CP039378.1\|WP_146419389.1\|343010_343325_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212144	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs. RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.	9.68683e-20
NZ_CP039378.1\|WP_146419390.1\|343553_344723_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.11031e-05
NZ_CP039378.1\|WP_146419382.1\|330158_330410_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.17963e-08
NZ_CP039378.1\|WP_146419380.1\|326513_327365_-\|sialate-O-acetylesterase	gnl\|CDD\|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	1.25075e-69
NZ_CP039378.1\|WP_158632719.1\|327459_330045_-\|DUF3427-domain-containing-protein	gnl\|CDD\|378760	pfam11907, DUF3427, Domain of unknown function (DUF3427). This presumed domain is functionally uncharacterized. This domain is found in bacteria and archaea. This domain is typically between 243 to 275 amino acids in length. This domain is found associated with pfam04851, pfam00271.	2.24728e-85
NZ_CP039378.1\|WP_146419386.1\|334963_339073_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	3.59547e-142
NZ_CP039378.1\|WP_146419375.1\|319928_321083_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.14685e-45
NZ_CP039378.1\|WP_087069523.1\|333566_333872_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.40266e-28
NZ_CP039378.1\|WP_158632720.1\|341358_343011_+\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	9.10645e-40
NZ_CP039378.1\|WP_146419385.1\|333849_334755_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.58968e-98
NZ_CP039378.1\|WP_146419376.1\|321730_321961_+\|excisionase-family-DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.47876e-08

>NZ_CP039378.1|WP_146419383.1|330463_331306_+|IS3-family-transposase
MCRILGVSRAQYYRYRSPKPSKRRAEDVDLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQRRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYTQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHICHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
>NZ_CP039378.1|WP_146419382.1|330158_330410_+|transposase
MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLDSLSEENEILKKALGFLAQK
>NZ_CP039378.1|WP_158632719.1|327459_330045_-|DUF3427-domain-containing-protein
MFKELLKIPNLEVRVLKQSDSFHAKGYIFDKGEYQSMIIGSSNLTETALIRNYEWNLRITSYENAALTDQVINEVEQQWQRAAALTPEWITDYEADYQTIVFNRQKNEPIETVAEESADYIAITPNHMQKDALKSLNFLRHEGHQKALIVSATGTGKTYLDAFDVKRVNPKKFLFIVHREQILKKAKASFHQVLGGDWSEYGILSGNENQRDARYLFATIQTLAKENTLSQFDPEEFDYLMIDEAHKSGTSSYHRVIDYFKPQFLLGMTATPERTDDFNIYELFDYNLAYEIRLQDALEEDMLAPFHYIGVTDYELNGEIGEEKTPLQNLVSSERMDYVEQQLNYYGYAGDQVHGLIFCSRKDEAKEVARIMTAKGYPSVALTGEDSVDYREQVIRDFEAGKYQYIVTVDIFNEGIDIPCINQVVMLRNTQSSIIFIQQLGRGLRKFPRKDFVTVIDFIGNYKNNYLIPIALTGDHSRNKNSLRSKLSTDQIIGMSTINFTEVAKQRVYDSINNSNLTELKQLRDDYQDLKKRLGRVPLLFDFTTHGSIDGSVLVAKYDNYYQFLLKMKEDVHLSIDEDMVLRMLSKELLNGMRIHELLLLKLLFEKDGVVSVGDFKKALEQVNARVDQKTLDSMLLILSLSFFKAADQDKYGRDACVTLDNNQYRLNGRIKTAYQTNSFFKLLVDDVLATGLFKADGYDQTVPLTIGKKYTRKDACRLLGWEKDQTSTIYGYKTAYGTCPLFITYAKSQDIDDGIKYEDEFLNSQTMRMFTRHPRKIESPEVQTMVQGNASGELKMPLFVKKSDDEGIDFYYLGLVDIDQKSLRQESMVVKDGKIDPVVTMNLILEKPVQYSLYLNLTKD
>NZ_CP039378.1|WP_146419380.1|326513_327365_-|sialate-O-acetylesterase
MMKSILLVGQSNMAGRGFIQDVPGLRHERVKMLRNGRWQMMAEPIHFDREVAGVGPAASFAAAWVQAHPDEELGLIPCAEGGSTIDEWASDELLMRHAITEAKFAQESSELIGVLWHQGESDSLNGGYQTYAAKLTAVFNHLRVALGQPDLPIIAGQLPAFLGKAGFGASATEFNEINREMAQVVAQDPHSYLVNAAELTANPDGIHIDAASQRRFGIRYFQAFEQHQDVPDVLADEAVQLDQLYQRPESQQEKMYRLSRDFAFGQMSYADFIAQLTGKETSK
>NZ_CP039378.1|WP_146419379.1|326004_326517_-|PadR-family-transcriptional-regulator
MIQFLILGLLKKKPGAYGYELLADMESQYYAFFVNFTKGSFYYNLQQLAEKVLIEKVADDVPDKRKKNRYQLTAAGITAFEQQFAHYGRQNKPITFPFYTPLLFTDQVAPEQMDKLLKSQIEQTQAKIRAIDAALANPADLQPMFIKMMTNSKRHHEVNLEWLQEQLENQ
>NZ_CP039378.1|WP_146419378.1|322854_324477_+|AAA-family-ATPase
MENNKISISINCGEPGSGKTTKLIEEAMEILAKGENLYILSPTHKSKSQLNKAINKAVETTGDNTYKELFSSLHVLGNNYVGEANILLDEISMLSLDNFYSILFKARHHAKKMLMFGDIGQLPPPRGVGTLEYLLRYNSRVLNIDPHNFWKGISSLYEHSTNIELNIPRQWKDDIYSINLNILQKNYRLNAKSGLTHYDDNFYDHVFNSIIEKDDHTQELVNSLRENRLIIAPSHSLINSIDDLLQSHYGNNYNQVAPFVRVGSRGPGGKTYVNPEHPHYAQLLNRFYSIGAMPNNTMENYTPTSAVTAHYIEGIENDGVTFYLGKREITSSNNNTHFLNNNMLYTAVSRAKSPNKVVLLGKRETFEKMRQTMPIEIDITANNIVNQNAKKNTMTKIKNSSNILSVDDIYNLFLEEFEKEKVQGKYDDLLDLTPEKPRYIMNQFNPRCKNFKTLPQGYGQHYDNWNKEQLNKGNSKGGKNKKGRGKVQQYVADLFHNNLEEFNALKEEALSKVSPNDFQNHRGYNKYSVKDAITKIEAIN
>NZ_CP039378.1|WP_158632725.1|322529_322640_-|hypothetical-protein
MTVLVRLLTCKNHKLITVRVIATRNSPIRYLILIKI
>NZ_CP039378.1|WP_146419377.1|322114_322540_+|hypothetical-protein
MNRTREHFSATVIGFDMFKEITGEKRPIVYLRNIGSDTHNFNFGWITYTKEIREKLGLLQKWDWIKFEARIPNKPHFSNAMPSKIELKNPTKVFLPKLDNRIKPVSKAKVMTMIDKFVAEKDKAKRDKELAQERNKLPFRF
>NZ_CP039378.1|WP_146419376.1|321730_321961_+|excisionase-family-DNA-binding-protein
MELTQITENKELMEQLAIMFNPAPRYMNKKEACKYMGVCYRTLQKAIAEGLPSVLIGGVLRFDRLTIDEYLKNNQI
>NZ_CP039378.1|WP_146419375.1|319928_321083_-|tyrosine-type-recombinase/integrase
MAKIKKYTTKTGKIRYEFQVYAGVDSLTGRQKTTRRRGFKTRKEASIVLSRLELEIEKRGLQEDERRFFRDVCAEWMEQYRLTVRESTLEKTQRIIRVHVLPAFGDMLIDQVTPNVCQKVVNKWFLEAKSYKKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQERAGEKPENFWTRDELNTFFDYMTPKRDVEQFTMFRVLAYSGIRKGELLALTWKDIDFECNTLRVNKTLTQGLGGKLVVQPPKSSAGRRMINLDDSTMRYLRQWKGVQRETFLGMGFNTNNTSQLVFASNRNHFRSMNTPTKWLNKAIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTLDVYTHTTEQQNVAALQRFEDYVEAK
>NZ_CP039378.1|WP_146419384.1|332898_333570_-|type-II-A-CRISPR-associated-protein-Csn2
MKISYAAHKEIELGSKRPTVIATNNPAVYHDFIVGLSSFNDKVKLFDDAFESLEVKDAIDWQGDVGLSDGASEKYSSGIYKQLEAVLTDDQRKSITDINSQLYTCVQKCLFMIDLPLEVTYDWDLKKLFKYCKIHFNADTMQNPYAIIESIIKIHLECGLKSAVGLTNVAHYLNQQQLTDLSKLTSSTAISTLLVEFTDMKSQELYTNCDFYYIDEDFVDWHS
>NZ_CP039378.1|WP_087069523.1|333566_333872_-|CRISPR-associated-endonuclease-Cas2
MRLMVMFDLPVETSEDRRNYRKFRKALINEGFLMIQFSVYVRVCVNKKSADFMEKRIAAIAPPEGLIQSLIMTEKQYNDMHFIAGKPKEDVRNSSERTIIL
>NZ_CP039378.1|WP_146419385.1|333849_334755_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSVVVSQHAKMSYSSRNMIVQTMDGINQVPIEDIDLLLVSTTQAVITTALISELVKSQVKIIFTDNASEPVCEAVGYYPNNRDVDLIKKQFKWDAKRQQLLWTKIVASKIVNQINVLSIYGVENADLIAELDKLEVDDVTNREAVVARKYFPLLFDNKFSRRDCSPVNTALNYGYSILLSNVNREIVSNGYLTYLGIHHHSNDNQFNLGSDLMEPFRPVIDYWLANQNFKELTPDVKFGLVDLLNLEMTFNGKEMLFRNIISEHVRNCLKYLSGETDGIQIEVELKNEVPNNAINGNV
>NZ_CP039378.1|WP_146419386.1|334963_339073_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKVNNYHIGLDIGTSSIGWVAMGEDGKPLRVKGKNAIGARLFREGNSAADRRMFRTTRRRLNRRKWRLKLLDELFDPYITPVDSTFFARLKQSNLSPKDSRKVFKDSTLFPDLTDKQYHLDYPTIYHLRHALMTQDKQFDIRMVYLALHHIVKYRGNFLNSTPVDSFKASKVNFDDQFKKLNELYTAINPEESFQINLANSEKIGQQFLDPSIRKFDKKKQISKIVPVTMDDKAVDKLNGKIASEIVNAILGYKSKLDVAVQCDPEDSKPWAVKFDDEDIDAKLQKILPEMDENQQSIIGIIQDLYSQVTLNQIVPNGMSLSESMIKKYNDHHDHLKLYKKLIGQISDSKKKTALKKAYDQYVGNDGKVIEQDDFYSSVKKNLDDSELSKQIMDLIDADKFMPKQRTSQNGVIPHQLHQRELDEIIEHQSKYYPWLAESNPNKHDLHLAKYKIEELVAFRIPYYVGPMITPEDQKKSGAAVFSWMKRKEPGQITPWNFDQKVDRMESANKFIKRMTTKDTYLIGEDVLPDESLLYEKFKVLNELNMVRVNGDSLKVADKQAIYQDLFENYKHISVKKMQNYIKDKTGLPNNPDISGLSDPDHFNNSLGTYNDFKKLFGDKVDDPDLQDDLEKIVEWSTVFEDKKILRDKLNEISWLSDKQKDDLESSRYQGWGRLSKKLLTGIVNDQGERIIDELWNTNKNFMQIQSDDDFAKRIHEANADQMKATDVEDVLADAYTSPQNKKAIRQVVKVVDDIQRAMGGVAPKFISIEFTRSEDRNPRRTISRERQLEDTLKDTAKTLVKSMNPDILSELDNASKSKKGLTDRLYLYFTQLGRDMYTGKPINIDEISNYDIDHILPQAFIKDDSLSNRVLVSKAVNNGKSANVPLKLFGVKMAHFWKQLAEAGLINKRKLKNLQTNPDTISKFAMHGFIRQQLVETSQVIKLVANILGDKYRNDDTKIIEITARMNHQMRDEFAFIKNREINDYHHAFDAYLTAFLGRYLYHRYIKLRPYFVYGDFKKFREDKVTMRNFNFLHDLTDDTQARIADTETGEVIWDRETSIKQLRDVYHYKFMLISQEVYTLRGAMFNQTIYPADEAGRKKLIPTKADKAVDVYGGYSGSTAAYMAIVRIHDKKGDKYKVVGVPMRALDRLNAAKNVSDAKYDQVLKDVLAPQFTKSKKSRKTGEISQTVEDFEVVLGKVMYRQLVIDGDKKFMLGSSTYQYNAKQLVLSDESVKTLASKGKLDEAQESAAYDNVYDEILDKVDRYFALYDQRNYRTNLHEGEQKFIGLPLHDTFDGSKKVANGKRETISDILNGLHANATMTNLKVLGISSPFGMFQSHGPINLNPETIILCQSPTGLFERRIILRDL
>NZ_CP039378.1|WP_146419387.1|340713_341160_-|hypothetical-protein
MKTFYRTVEELKKLSDDNKLAALLWHHEHGMVKIDHSDSEYMSWKNSLPVLLNVLCNSGLSNLVMVLEYGTPLGARIDAVLLGYNHKHGDQIMLFDLKQWSRIKSTNNLSVVQVSVGINAQGKRIWDSRLHPLQQLLTYEKYLKQNHR
>NZ_CP039378.1|WP_158632720.1|341358_343011_+|DUF2075-domain-containing-protein
MSPILGEHLRLRDKQALEKNNAIYIYLGPKNVYVGQTKHFFSRHKQHVQESNHRYINGSYTKVIVVFGILINQLSLDDIEKKLITYITADYEDDRNMTVNNGTSGNESPAYQNQDDVLTDFINPFWEELFSKGYVLKKNLAAVKESILFKYSPFTSLSEEKNNIINEIIRQPQNYIVSGLAGTGKTVVLTNLAARLSQTHPNKRIAVVVKTNWVKSAQKIFQAYSVKNIDVFTAYKLIKSGEQYDYVLVDEAHRLRRYYSKGNHVTQDIFNKDENQNELKLLGELNPCFILFYDPAQTVRPSDIPKEDYDTFLTDNEFKELKLTKEYRVNINELNKTYTSDDFMTGIQEFLQIDSSNAKFDHNIFQSYLTNPDAYFGVVNSIHELFDYLDDCENYEPATQNRVMAGYTREWASHQKKNRDRNDVYDWVEGNYHWKWNSDSENWLMKKNSRIEIGSIHAVQGIDLNYAGVIISTDISIDNTGKIIGIPENYKDRNGQYKSDDYSKEGFSNFIKNIYYVLLTRGIDGVRVYFEDKKMQQYFYDFMGINKEIQ
>NZ_CP039378.1|WP_146419389.1|343010_343325_+|nucleotide-pyrophosphohydrolase
MNYEAVLAKLIEFRDRKQWQEYHTLISLSRALSIESSEVERVFLWKRNDEDLDSSDIVNLKMEVADVLTYAYYLCEKLGENPNDLVNEKLEINQTRHWKFDHKE
>NZ_CP039378.1|WP_146419390.1|343553_344723_+|serine/threonine-protein-phosphatase
MKIKFLTKKFFRPRLSEFISVQTDNFLRKLKPRPFFTEYIEQVFRKNVDPNVSQNCLTLSVLTDTHEKAVASSSYYGLNGVRHIIEANKACDSLPVDYNIHLGDLIDGSDKPEISRGLLQFTMENYQNSQRPFYVLEGNHDENDKYDEHKFITSASFRRDDYYNLVTKLDFEQPEIKRLSLGSKVAWIDKGDIRIIFLNTSDIPYILNGGTKKYDFKKVRGIREQQIGDLISILEKTIDKHVVVFGHANLISQSGRSALDFNGDLVQKIFTSFNNKDSGQLKNELSGDFGVNVRYNFTDTGISTISNYICGHMHYEKCYKVNGINHIILNCSALMGKKHGVTTDYNKKWDRRYNEISELAGYFININPDKMLLQIFGYGAATRFVSFEI
>NZ_CP039378.1|WP_158632721.1|344995_345157_-|hypothetical-protein
MAKLLAMFYKKICLRDHNLIGSRIFGVGKYFHSKSTRPFLITKRHLSLPSAML
>NZ_CP039378.1|WP_146419391.1|345380_346043_-|hypothetical-protein
MKKINDFFDEMSTFEIIVSVTILGVMLGCFAFTVKLEIFISIINTILLFITLVTTWRIYKDEHRYNLKIGFNITNIISSDDGKITRYRIDSKNKRIGVWAANSGKVPGSFYFVGVCKPLKDSEYKLLETNNDSPNTFDPVVYQLKDLDKGLSEEIDFEKLEPGCVSKTVYFNISEIRSHFKNYNDVIMFDVVFADPFGHFYHRTLKDGLTDVKKTATQNE

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Crispr_ID: NZ_CP039378_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039378_3

1004064-1004176

Orphan

Consensus_repeat	Method
GGCGTTCAACAATTAGATTCAGGAAGTCA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP039378_3

>merge|NZ_CP039378|3|1004064-1004176|CRISPRCasFinder
GGCGTTCAACAATTAGATTCAGGAAGTCACACATTGAATAGCGGACTTCAAACTCTAAATGGAAGCACAGGAACCTTGATTAGCGGCGTTCAACAGTTAGATTCAGGAAGTCA

>NZ_CP039378|3|3|1004064-1004176|CRISPRCasFinder
GGCGTTCAACAATTAGATTCAGGAAGTCA	CACATTGAATAGCGGACTTCAAACTCTAAATGGAAGCACAGGAACCTTGATTAGC
GGCGTTCAACAGTTAGATTCAGGAAGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039378.1\|WP_060743518.1\|999810_1000674_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP039378.1\|WP_002834264.1\|995288_996401_+\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NZ_CP039378.1\|WP_060743520.1\|1005211_1005847_+\|DUF4767-domain-containing-protein	unknown	unknown	gnl\|CDD\|374270
NZ_CP039378.1\|WP_011673877.1\|1001288_1001609_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP039378.1\|WP_088355890.1\|998768_999608_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841
NZ_CP039378.1\|WP_002834275.1\|988002_988806_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293819
NZ_CP039378.1\|WP_060743524.1\|1009063_1010407_+\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP039378.1\|WP_141822893.1\|1011685_1012804_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP039378.1\|WP_146419538.1\|1015095_1016502_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP039378.1\|WP_002834268.1\|993531_994257_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP039378.1\|WP_011673888.1\|988918_990169_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP039378.1\|WP_060743521.1\|1006106_1006760_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NZ_CP039378.1\|WP_146419536.1\|992332_993535_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP039378.1\|WP_094104217.1\|996543_998349_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP039378.1\|WP_002834184.1\|1012806_1013787_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP039378.1\|WP_146419537.1\|1013779_1015093_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP039378.1\|WP_141822895.1\|1007666_1009049_+\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|225343
NZ_CP039378.1\|WP_036673200.1\|1010687_1011674_+\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920
NZ_CP039378.1\|WP_049752783.1\|1000693_1001197_+\|DUF1836-domain-containing-protein	unknown	unknown	gnl\|CDD\|378076
NZ_CP039378.1\|WP_141822897.1\|1006793_1007507_-\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225099

Protein	Function_ID	Function_description	E-value
NZ_CP039378.1\|WP_060743518.1\|999810_1000674_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.84768e-94
NZ_CP039378.1\|WP_002834264.1\|995288_996401_+\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	1.87144e-45
NZ_CP039378.1\|WP_060743520.1\|1005211_1005847_+\|DUF4767-domain-containing-protein	gnl\|CDD\|374270	pfam15983, DUF4767, Domain of unknown function (DUF4767). This domain family is found in bacteria, and is approximately 140 amino acids in length. There is a single completely conserved residue Q that may be functionally important.	3.84102e-47
NZ_CP039378.1\|WP_011673877.1\|1001288_1001609_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	8.63436e-15
NZ_CP039378.1\|WP_088355890.1\|998768_999608_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	1.0117e-39
NZ_CP039378.1\|WP_002834275.1\|988002_988806_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.24674e-67
NZ_CP039378.1\|WP_060743524.1\|1009063_1010407_+\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	3.60599e-117
NZ_CP039378.1\|WP_141822893.1\|1011685_1012804_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	8.19984e-159
NZ_CP039378.1\|WP_146419538.1\|1015095_1016502_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP039378.1\|WP_002834268.1\|993531_994257_+\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	3.15771e-22
NZ_CP039378.1\|WP_011673888.1\|988918_990169_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.64249e-82
NZ_CP039378.1\|WP_060743521.1\|1006106_1006760_+\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	3.0082e-40
NZ_CP039378.1\|WP_146419536.1\|992332_993535_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	9.02633e-50
NZ_CP039378.1\|WP_094104217.1\|996543_998349_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	1.17059e-114
NZ_CP039378.1\|WP_002834184.1\|1012806_1013787_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	2.88289e-177
NZ_CP039378.1\|WP_146419537.1\|1013779_1015093_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.31108e-159
NZ_CP039378.1\|WP_141822895.1\|1007666_1009049_+\|family-1-glycosylhydrolase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	4.52665e-172
NZ_CP039378.1\|WP_036673200.1\|1010687_1011674_+\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	7.17989e-88
NZ_CP039378.1\|WP_049752783.1\|1000693_1001197_+\|DUF1836-domain-containing-protein	gnl\|CDD\|378076	pfam08876, DUF1836, Domain of unknown function (DUF1836). This family of proteins are functionally uncharacterized.	9.77839e-38
NZ_CP039378.1\|WP_141822897.1\|1006793_1007507_-\|UTRA-domain-containing-protein	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	5.94431e-56

>NZ_CP039378.1|WP_011673877.1|1001288_1001609_+|winged-helix-turn-helix-transcriptional-regulator
MVKNNAALAAFKKNIPLLDALSDERRQQIMITLGESDAGLTVSELTKLIGLSQPAVSHHIKQLKDLNLVSVRKVGTSNIYQLTIKDALAQVQELIDILRKDKKLLR
>NZ_CP039378.1|WP_049752783.1|1000693_1001197_+|DUF1836-domain-containing-protein
MDSKQLENFAKMSLPKWDELPNIELHLDQVIDLANNYLRPLEVDLLTPTMMHNYLKQAVIIRPQGKLYGRMQLAAVIIIGCLKSILSLDEIKRGFEAELKLTSSRRAYNNFVNAFNEEVQRISQHGPRNLWNELLAETAVVSLQHSAIISMLTKKMAKDLLSDLEEK
>NZ_CP039378.1|WP_060743518.1|999810_1000674_+|DegV-family-protein
MLKQKIAVLVDSCSDVPAEIANREYFEMIPMGVFFGEEEYQDRVNIEPDEFYQKLAKANPLPTTASPKGELITKALDNLSKRGFTKIIAVCISSGLSGTAQQVKIYAKNYPQLQIEVIDTKNIGIASGFAAVRASEVIEEGWEFDQIVEEVQRVANQTKVFFYVPTLKYLIAGGRIGRVAGLVGSIINLKPIISCDDEGIYYPVAKAHGEKKALKKMLQLVDDTLKNAQKFNLAVVHGLNEGLMNQISTEFKNKYPNMGKIYNGDISPALGVHTGPGLIGIGVQIIK
>NZ_CP039378.1|WP_088355890.1|998768_999608_-|methyltransferase-domain-containing-protein
MNKIELATQFIQRHLHQFQCPICKSNFNEVQSGTLICNNQHSFNIAKKGSLFFLNNPVNTEYTNEMLTYRNQFLTAGFFNPMLEEVINNISGDLILDAGCGEGTTTKWMASHFDGDFVGLDISKPAINIAGSGIAPQPYPLFMVGDLAQLPFTDQGLTSIVNILSPANYQEFDRTLATHGELIKVIPGNHYLSELRQLVYPDGEHATYDNAPVKNHFIEHYEYVEFSKISYKFPLDDKLFTALFNMTPLTWQAQDRKEAILQDGLKEITAEFEIGVVRK
>NZ_CP039378.1|WP_094104217.1|996543_998349_+|DUF2207-domain-containing-protein
MKFFTKRTFLLLVTMLTFGIFWNVKTVKADYEISQFRMQINVNKDGSANINQSVLYDFDDDYHGVYLTQDLRGTAGAELEGITVSNNKGTQNQVPINNSGENLTAKVESSKKQMKIKVYNAVSSDDQTKITYHYRINGVVTNYKDTAEINWKVIGSGWDVPLEDAQVTIKLPGKNVKGLHAWSHGEAAGYTTVDKAKGKVTLDIGDNPENTFVEAHMVFPTALTPDNKKIVNQNHLAAVKKQEYQLVKRENEAQARARRIAAYAKITSAIISVLILIGMMGWLKKHGYHRYDIPTPMEHSFDVPSISPAEAEALFNKSKADTKGVSAEMLVLAAEGKLKFKQILYGKRGKETTEIERQGKFNMSFVDRCLDRIGDGQQVTIKQINDYAKKDKKNNVATWYKEWQSEVDANLARFKDTYNISYRHGLLGLAITTPILAFIVGIIGRFGEVTNLYWIGGIVLTLIIEAWVLATWDKVSMYNEAGLQQYNQIRGFKQMMKDIAHFNTAEIGDLILWEQILPYATAFGLAEKVAKKLKTDFGTQLNENVPFYAYYYGINGMHVGIANSISTSISHSVSASSSGSSGGFSGGSSGGFGGGSGGGAF
>NZ_CP039378.1|WP_002834264.1|995288_996401_+|low-temperature-requirement-protein-A
MKNELLKKVSMIELFYDLVFVYMISQVTGLIHHLQNGVISPSALSIFTLVVIVSINSWMVQTVFNNRYGKSQWSNVILSFVDMAIVLYMSNAFSDTFDRHLIGFFIAAGLLSLTLAIQYLLVFVQTKNEYDRNIAMAFMRILFFRTACLLAGGVLAGRWGTTIALFGIITSWIIPAFTGKHTQKHPIIFSHLLERLTALIIIMFGETIVGISKYFTQNTFSIQSIMIFIIVVSLFFTYIVEFDHLIEEQRTHETGNLLIYLHYFILFGLSLVTVALDFIHESEANAIFSITCLYVGIALFYIGIVIASYYNKTTLKLENYVVVAFIVVTLMGYFTSMCFATFSIIAGVTALTTLINAVVITLSLVRRYER
>NZ_CP039378.1|WP_002834268.1|993531_994257_+|EAL-domain-containing-protein
MSELEQKLEGICFYEQPIFLIDAAEKEEKKVIGSELLLRKTGGENRFPAMLYKEYMRDDASNLVFCTWLVKNIIEIINDNPGIQYSFNLDPQQLLYDSTFEAMKGLIPYCDRVMIEVTESIPSNRDIDQYFNYSVRDQIKRIHEMGFSVAVDDVSSGMNSFNAVREYTQDIDRLKLSLIQLRNVEEGMITVTISLWKALAANTGIDLVIEGIDSLEVSKWLLENGLEKQQGYYFATPRKLK
>NZ_CP039378.1|WP_146419536.1|992332_993535_+|diguanylate-cyclase
MENTVMNTIIYWAKGFFSFNTVVIAAITVGVLFMLAAGTYVVEMNMDKTKTSSTLIEELLWGVGLTIAMVFLQNVFTHLYSTIASSELGWEYSTAQFMVLFYCLYIVHRKVVLWFNIILPMYVYGLGIVRGQIGFDIAPILAILVIILISYTIYQQNDTLIDENVKYYSTLIMFGLAWWFVLKDIHHLTIVDIMCLTLEFLIAMSIVHFGNKKVRMIMKQYLNLMQEVDTDALTGVYNRNSFNKVVEGVFEFYSNNDAPLTMVMFDIDHFKQFNDQYGHQVGDKVLRLVADRFSYELVDRKAHGQLFRVGGEEFAIIFRGRTADDCEKIVRAIRDDLVKETIRVNNHDRVGIKVSIGISQLRDDDFDFQTFYKRVDDYLYQSKRNKRNSITVEGKVASLN
>NZ_CP039378.1|WP_011673888.1|988918_990169_+|PDZ-domain-containing-protein
MKTNKLVIVAAIAGLLGGGVAYGGASFIHNQMESSSTAVPTGSNTTGTTKTSNVKVNVSSQSSKAFSTIKDSVVSVINLQKANTNDSDSIISSIFGNESSSSSKSSSSSSELETASEGSGVIYKKSGDTAYIVTNNHVVSGSSSLEIIMSNGKKLPAKIVGTDSVTDLAVLKINSSAVTTVASFGNSDNIKVGETALAIGSPLGSEYATSLTQGIISAKKRTVETTTENGQNNGEATVIQTDAAINAGNSGGPLINLAGQVIGINSMKLSASGSDSTTVEGMGFAIPSNEVVTIIDQLVKNGKITRPALGVALVDLTQVSSTQQKSILKLPSNVTDGTVLMQVNNGPAKTAGLKKYDVITKIDDKAITDTAGLREALYKHKINDKITVGYYRDGKYKTTVVTLTKTSTTTSSTTTK
>NZ_CP039378.1|WP_002834275.1|988002_988806_+|MBL-fold-metallo-hydrolase
MSEDGLKVSVLASGSTGNVTYIETPERKVLVDAGLSGKKIAGLMDSVGRDISEVDSLFVTHEHSDHIQSVGVLARKYGIDIYANQGTWDAIGGKIGKVPTEQKFIFDPNTTKSLDDLDIESFSVSHDAAEPQFYEFHHAGKSFVILTDTGYVSDRIAGTIRNADGYLFEVNHDTEMLRMGGYPWPLKQRIMGDHGHLSNEDGANALMDVIGNRTKKIYLGHLSLHNNMKELAHLTVSSMMQNHDLAVGHDFEILDTDHEIADPLTLI
>NZ_CP039378.1|WP_060743520.1|1005211_1005847_+|DUF4767-domain-containing-protein
MRHMKKPEKRSFGSINSVVWVILALIVVIAGYKFFYPNHVTNTTSSSDRSSSTKVIKVEEGKSSSSKAQSSSKKTKKTEKKIWTDKQDSELAAFISSWQQTMGQTYTGTNTNASVSFGGVSFPDYLSKGQIYVNQQEVSMQWTRSEKSDSEYKVVAVYTGDQYMYLFTFHNGQPEVLVTSQSASNGMNFKVTENADLVAEFQKVAAENTDK
>NZ_CP039378.1|WP_060743521.1|1006106_1006760_+|nitroreductase
MEVKQAIQKRHSVRHFTDQKIDSKQLKEMIGIAQKAPSWVNSQPQKVYVAQGETLEAIRKQQQELTITGAKTNSDIPPMSRKLWSEQAQKNMAEWSHGIPAVLGDNWQETLGKEASQLYNAQAVVYLTLPKGYTPWSLFDLGAFSQNILLATTEQGIDSIVAYNFVKYPQILREELKIPDDEEIIVGIGLGFEDEQAQVNRITSKRMDTESILKIKK
>NZ_CP039378.1|WP_141822897.1|1006793_1007507_-|UTRA-domain-containing-protein
MYKYEKISQAIRKQIIEQKIKPGALLPDQNQLAKEFNTTRITIGKALQSLIIEGLIYSKRGAGTFVRKDAHLNDEFTNDVDKPLGTTSTHPHSKVTSKYIHLTARIANEVEKKNLLLEDGETVYVIKRTRFIEGKAYSYEQTIMPTKIATITEEVLKKSIYQYLENEYHLELAGSHRQITARKVSEEDAKFLGEKLGDPILVISQTSYLVDGTPFEFSESRFPYQSSAVSADVNLLE
>NZ_CP039378.1|WP_141822895.1|1007666_1009049_+|family-1-glycosylhydrolase
MKGKLPDNFLWGNSTSSMQTEGGVHEGGKGPSVYDTYEATETTSNWDVAIDNYHHYEEDLDLMANQGMNCYRFQISWSRVNPTGDGDFNEEGIQYYDRLINDLLKRGIKPMICLYHFDMPLHLAEKYNGFMSRHVVDAFVRFGKKMVDCFSDRVKLWVTFNEQNLYSQTEAFHIAGYLKGDQTDEELQLIAHHVMTAHAQVTNYVHETSDAQIGGMLAYVESYPKNCRPHDVYVARQIDEFLNRNLLEVWVHGHYSTEVTQYIKNHHFDIDFTEQDQIAFEKLKSDFISFSYYASNVVDSTKIPQGTMPNRYLDYGGVENPYLKATDWGWNIDPLGFRDVITKTYNEYGIPMFPIENGIGYREAFDGTEIQDDYRIEYHRDHIQAMIDAVVEDGVPVLGYLGWGLIDIPSSSGNMEKRYGMVYVNRGNHELRDMKRVPKKSYKWFKKVIETNGNDLENDL
>NZ_CP039378.1|WP_060743524.1|1009063_1010407_+|PTS-sugar-transporter-subunit-IIC
MGSSNKESVNDKMQNSKFIAKFTEISVKVGNWVYLRSLRDAFAVILPMFIVAGIGVLLNNVVFTWFLSGDMLTKFQVIGNAIVNGTLNVAGILVAPMIGYSLARNKGFNNPIAAAAMSLASIFILMPGSIQLGTVASAGAKMATVTGGLSYLNTGTQGMFGGIFVGLIATGLFIKLASIKKLQIHLGENVPPAVAASFSVLIPAILLMSFFAIIAALLAGFFNTDLINLIKTWIQEPLRGFNTSIVGYCVIYTLANFLFGLGIHQTVLSGALLDPLVLVNMNENMTAYAHHQAIPNIITTSFVSNYTLIGGSGSTIALIIAILIFSKAKSSRQIAGLSLAPGIFNINEPMIFGFPIVFNLPLIIPFVLFPVVGSLMGYFATLWGWVSRTVVLVPWTTPPLIGPYLSTAGDWRAVILQILIIVVGVFLYLPFLKISERVSEIQAEENL
>NZ_CP039378.1|WP_036673200.1|1010687_1011674_+|lipoate--protein-ligase
MRYVTYMGTDAYTNIATDTWLLNNLNAKEPVFALWQNNNAIIVGQNQNTFGEVNQDFVDEHQIEVVRRVTGGGAVYHDLGNLNFTLFVPIESAANVDFKKFSEPVLRALHTLGIDAEASGRNDLLVNGKKISGVAQRYAKGYLMHHGTLLFDSNVDTMVRSLNVADEKFISKAAKSVRSRVGMIKDAAPKGLTLQDFWDAVQYELTDHGKDQEIVLTPQQKQEIIQLTADKFSTWDWNYGRSPEFNFKNHAKYDGGIIDVQVQAEGGTIRDINFTGDFLGLRDWREIKDQFIGLPFETAEIKTVFERNHEGRYFGNITDDELIKLFEA
>NZ_CP039378.1|WP_141822893.1|1011685_1012804_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MAVKDDNKQVLDFNLQIEKQTDSFPMLQVLNNDGEIVDEDALKEAGLNEDQLVELMKQMVFSRVLHERSTKLAKQGRLGFYAPTIGEEASQIASNYAFEKGDWLFPGYRDIPQLVMKGWPIYKAFLWSRGHYEGNEFDDVNGWMPQIIIGAQYVEAAGAALGLKMRKQPNVAYAYTGDGGTSQGDFYEGMNFAGAYNAPAVFFSQNNEYAISTPRKLQTKAPHLAAKGWAAGLPSLVVDGMDPIAMYLASKKARQWAVDGNGPVFIETITNRLGAHSMSGDDPLRYRTQEEIDEWTKKEPLIRFRKYLEGLGLWSEEIENDWTEVVNEQIDDGVKQADGIDKQKISDFIEQTLEVPGQAAQEQINKFRGEGK
>NZ_CP039378.1|WP_002834184.1|1012806_1013787_+|alpha-ketoacid-dehydrogenase-subunit-beta
MAQKTYIQAITEAQDLALANDENVVIFGEDVGKNGGVFRATDGLQAKYGEDRVFNTPLAESGIGGMAIGMTTQNYRPIMEIQFFGFVYEVMDSLAGQMARGRFRFHGTRTFPIVVRSPYGGGTKTPEMHADSLEGLVAQTPGLRVVMPATPADAKGLLLSAVESNDPVIFLENLRLYRSIRGDVPEGYYTTPLDKANVIREGKDVSIITYGGMVHTSLAAAEELAKDGIDAEVVDLRTVSPLDLDTIGESVEKTGRVVVAQEAQRQAGIGAMVMSEISERFIMSLKAPIGRVAAPDSVYPFALAENEWLPKADDIIEKVKEVVNFD
>NZ_CP039378.1|WP_146419537.1|1013779_1015093_+|2-oxo-acid-dehydrogenase-subunit-E2
MTEIFKMPDIGEGMAEGEIANWLVKVGDTIKEEDAVAEVQNDKLLQEILSPYGGKITKLFVEAGTVVKVGEPLIEFDGDGSDAGAESEAPKETPASTEPEPESSAPVNQTAPEVTKVGAEYTSNGQLLAMPSVREYARKNDIDLTQVPATGRHGHITMADVENFKASPASAPTASPAPAASVPETESEKAPSAPATPAAPAEVKAGRVPLSPVRKVIAKTLTNQVQTIPHVTIMDEVEVSKLMDLRNQFKEQAKQKGYKLTYMPFIAKALAGAAHKYPELSAMVDIEKQEIVYYEDTNVSFAVDTDNGLFVPNVKNVKSKSIMEVAQEIDDMAIRGRAGDLKPNELKGGTVTITNIGSESGSGFFTPIINPGESAILGIGRIRKTPVVNEDGELAVGNTLKLSLSFDHRLIDGALAQKIMNELKALLSNPAYMLMEV
>NZ_CP039378.1|WP_146419538.1|1015095_1016502_+|dihydrolipoyl-dehydrogenase
MVVGTQAINVDTLIIGSGPGGYVAAIRAAELGQKVVIVERDYIGGVCLNVGCIPSKALIQAGHLYSTLQHGNPFGVSVSESKIDFTKTQEWKQNQVVNKLTGGVELLLKKHKVEIVRGEAYFNDNETVNVINGDDSHVYRFKRALIATGSRPVEIPHFKFSGRVIDSTGALNLKDVPEHLIIIGGGVIGAELAGAYMNLGSKITIIEGLDHILNGFDGELIQPVLNNFKKNGVEIVTEATAVEANQTDKDVTVTYEADGTTKTVTGDYCLVSVGRRPNTDQLGLNNTNIKLSKRGLIEVNDSMQTSVKHVYAIGDVVAGPALAHKASFEAKVAAAAMGGEDAHDTHYVLPAVAYTNIELATVGETPQSIAEKKLDAKSSKFPFAASGRAMTMDQTEGFIRLITDNPTGGIIGAQIVGPEASNLISELTLAIENGLTIKDIELTIHPHPTLGEEIMDAAELAAGLPIHV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039378_2	2.5\|331749\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331749-331778	30	KP942676	Pectobacterium carotovorum plasmid Drgb1, complete sequence	93310-93339	5	0.833
NZ_CP039378_2	2.13\|332278\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332278-332307	30	MN694626	Marine virus AFVG_250M967, complete genome	15486-15515	5	0.833
NZ_CP039378_2	2.16\|332475\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332475-332504	30	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	33777-33806	5	0.833
NZ_CP039378_2	2.6\|331815\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331815-331844	30	NZ_CP045267	Bacillus megaterium strain FDU301 plasmid pFDU301E, complete sequence	2832-2861	6	0.8
NZ_CP039378_2	2.14\|332344\|29\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332344-332372	29	NZ_LR699116	Aquicella lusitana strain SGT-39 plasmid 3	30071-30099	6	0.793
NZ_CP039378_2	2.14\|332344\|29\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332344-332372	29	NZ_CP019642	Planococcus sp. Y42 plasmid unnamed2, complete sequence	35240-35268	6	0.793
NZ_CP039378_2	2.16\|332475\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332475-332504	30	MH598805	Pelagibacter phage HTVC109P, complete genome	34605-34634	6	0.8
NZ_CP039378_2	2.16\|332475\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332475-332504	30	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	130821-130850	6	0.8
NZ_CP039378_2	2.18\|332607\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332607-332636	30	MN694375	Marine virus AFVG_250M985, complete genome	28030-28059	6	0.8
NZ_CP039378_2	2.18\|332607\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332607-332636	30	MN694123	Marine virus AFVG_250M986, complete genome	12092-12121	6	0.8
NZ_CP039378_2	2.18\|332607\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332607-332636	30	MN693659	Marine virus AFVG_250M987, complete genome	12103-12132	6	0.8
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	NC_020879	Aeromonas phage Aes012, complete genome	85045-85074	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	MH179477	Aeromonas phage 60AhydR15PP, complete genome	18366-18395	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	NC_008208	Aeromonas phage 25, complete genome	84271-84300	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	NC_014635	Aeromonas phage phiAS4, complete genome	83760-83789	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	DQ529280	Aeromonas salmonicida bacteriophage 25, complete genome	84271-84300	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	MF479730	Aeromonas phage AS-gz, complete genome	1410-1439	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	JX306041	Stenotrophomonas phage IME13, complete genome	88192-88221	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	MH179476	Aeromonas phage 50AhydR13PP, complete genome	144285-144314	8	0.733
NZ_CP039378_2	2.2\|331551\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331551-331580	30	NC_019543	Aeromonas phage Aes508, complete genome	83464-83493	8	0.733
NZ_CP039378_2	2.5\|331749\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331749-331778	30	NZ_LN890333	Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid III, complete sequence	2222-2251	8	0.733
NZ_CP039378_2	2.10\|332080\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332080-332109	30	MN693708	Marine virus AFVG_250M278, complete genome	13150-13179	8	0.733
NZ_CP039378_2	2.10\|332080\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332080-332109	30	MN693408	Marine virus AFVG_25M188, complete genome	10203-10232	8	0.733
NZ_CP039378_2	2.10\|332080\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332080-332109	30	MN693471	Marine virus AFVG_25M187, complete genome	21951-21980	8	0.733
NZ_CP039378_2	2.10\|332080\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332080-332109	30	MN693736	Marine virus AFVG_250M277, complete genome	13138-13167	8	0.733
NZ_CP039378_2	2.10\|332080\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332080-332109	30	MN693559	Marine virus AFVG_25M310, complete genome	11452-11481	8	0.733
NZ_CP039378_2	2.10\|332080\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332080-332109	30	MN693567	Marine virus AFVG_25M189, complete genome	10370-10399	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	AP013857	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S26-C134, * SEQUENCING IN PROGRESS *	3624-3653	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	AP014471	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, * SEQUENCING IN PROGRESS *, 8 ordered pieces	7977-8006	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	JX519265	Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence	14694-14723	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	AP013862	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S45-C148, * SEQUENCING IN PROGRESS *	11774-11803	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	AP014470	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, * SEQUENCING IN PROGRESS *, 7 ordered pieces	24362-24391	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	KT001919	Klebsiella phage Miro, complete genome	170137-170166	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	AP013858	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S28-C98, * SEQUENCING IN PROGRESS *	11774-11803	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	MH598801	Pelagibacter phage HTVC200P, complete genome	36172-36201	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	AP013859	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C166, * SEQUENCING IN PROGRESS *	9152-9181	8	0.733
NZ_CP039378_2	2.17\|332541\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332541-332570	30	AP013708	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S26-C16, * SEQUENCING IN PROGRESS *	5534-5563	8	0.733
NZ_CP039378_2	2.18\|332607\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332607-332636	30	AP019525	Tenacibaculum phage PTm5 DNA, complete genome	78173-78202	8	0.733
NZ_CP039378_2	2.18\|332607\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332607-332636	30	AP019524	Tenacibaculum phage PTm1 DNA, complete genome	78182-78211	8	0.733
NZ_CP039378_2	2.4\|331683\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	331683-331712	30	NC_014023	Bacillus megaterium QM B1551 plasmid pBM700, complete sequence	35544-35573	9	0.7
NZ_CP039378_2	2.10\|332080\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332080-332109	30	NZ_LR134412	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 3	8996-9025	9	0.7
NZ_CP039378_2	2.16\|332475\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332475-332504	30	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	19466-19495	9	0.7
NZ_CP039378_2	2.19\|332673\|30\|NZ_CP039378\|PILER-CR,CRISPRCasFinder,CRT	332673-332702	30	NZ_LT960615	Hartmannibacter diazotrophicus strain E19T plasmid HDIAp1, complete sequence	58530-58559	9	0.7

1. spacer 2.5|331749|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to KP942676 (Pectobacterium carotovorum plasmid Drgb1, complete sequence) position: , mismatch: 5, identity: 0.833

ctatcg-aaaattctgaaatcaccgaactac	CRISPR spacer
-gatggtaagattctaaaatcaccgaactac	Protospacer
  ** * **.*****.***************

2. spacer 2.13|332278|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN694626 (Marine virus AFVG_250M967, complete genome) position: , mismatch: 5, identity: 0.833

tcttagtcc--aaataaaagctgatttactta	CRISPR spacer
--tgagttctgaaataaaagctgatttaatta	Protospacer
  * ***.*  ***************** ***

3. spacer 2.16|332475|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 5, identity: 0.833

tttagtaccttcctctacttttacctctgt	CRISPR spacer
tttagttccttcctctaattttactcttgt	Protospacer
****** ********** ******...***

4. spacer 2.6|331815|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045267 (Bacillus megaterium strain FDU301 plasmid pFDU301E, complete sequence) position: , mismatch: 6, identity: 0.8

cagttatgaaaatatgcagccgtatttaga	CRISPR spacer
taaatttgaaaatatgcagccgttttttga	Protospacer
.*. * ***************** *** **

5. spacer 2.14|332344|29|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699116 (Aquicella lusitana strain SGT-39 plasmid 3) position: , mismatch: 6, identity: 0.793

acaccgaagatgatttaaaaacgctattg	CRISPR spacer
aacttgaaggtgatttaaaaacgctactg	Protospacer
*  ..****.****************.**

6. spacer 2.14|332344|29|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019642 (Planococcus sp. Y42 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

acaccgaagatgatttaaaaacgctattg	CRISPR spacer
acactgaagatgatttaaaaaaagaatta	Protospacer
****.**************** .  ***.

7. spacer 2.16|332475|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MH598805 (Pelagibacter phage HTVC109P, complete genome) position: , mismatch: 6, identity: 0.8

tttagtaccttcctctacttttacctctgt	CRISPR spacer
agtaacaccttcccctactttaacctctgt	Protospacer
  **..*******.******* ********

8. spacer 2.16|332475|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

tttagtaccttcctctacttttacctctgt-	CRISPR spacer
cttagtacattcctctactttt-cctaaatc	Protospacer
.******* ************* ***  .*

9. spacer 2.18|332607|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN694375 (Marine virus AFVG_250M985, complete genome) position: , mismatch: 6, identity: 0.8

ttggtacacgcatattattttgtttctttt	CRISPR spacer
cttgtctacgtatgttattttgtttctttt	Protospacer
.* ** .***.**.****************

10. spacer 2.18|332607|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN694123 (Marine virus AFVG_250M986, complete genome) position: , mismatch: 6, identity: 0.8

ttggtacacgcatattattttgtttctttt	CRISPR spacer
cttgtctacgtatgttattttgtttctttt	Protospacer
.* ** .***.**.****************

11. spacer 2.18|332607|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN693659 (Marine virus AFVG_250M987, complete genome) position: , mismatch: 6, identity: 0.8

ttggtacacgcatattattttgtttctttt	CRISPR spacer
cttgtctacgtatgttattttgtttctttt	Protospacer
.* ** .***.**.****************

12. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NC_020879 (Aeromonas phage Aes012, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

13. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MH179477 (Aeromonas phage 60AhydR15PP, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

14. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NC_008208 (Aeromonas phage 25, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

15. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NC_014635 (Aeromonas phage phiAS4, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

16. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to DQ529280 (Aeromonas salmonicida bacteriophage 25, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

17. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MF479730 (Aeromonas phage AS-gz, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

18. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to JX306041 (Stenotrophomonas phage IME13, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

19. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MH179476 (Aeromonas phage 50AhydR13PP, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

20. spacer 2.2|331551|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NC_019543 (Aeromonas phage Aes508, complete genome) position: , mismatch: 8, identity: 0.733

tatcccacctttacccatttgttattgatg	CRISPR spacer
tatcccacccttacccatttgtatgctgta	Protospacer
*********.************   . .*.

21. spacer 2.5|331749|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN890333 (Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid III, complete sequence) position: , mismatch: 8, identity: 0.733

ctatcgaaaattctgaaatcaccgaactac	CRISPR spacer
aagataaaaattctgaaatgaacgaactac	Protospacer
  . ..************* * ********

22. spacer 2.10|332080|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN693708 (Marine virus AFVG_250M278, complete genome) position: , mismatch: 8, identity: 0.733

gtgcaattgttaatggagaagatggcactg	CRISPR spacer
gaaaatttgttaaaggagaagatggcagat	Protospacer
* . * ******* *************

23. spacer 2.10|332080|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN693408 (Marine virus AFVG_25M188, complete genome) position: , mismatch: 8, identity: 0.733

gtgcaattgttaatggagaagatggcactg	CRISPR spacer
tattgatacttaatggagaagatagcactg	Protospacer
   ..**  **************.******

24. spacer 2.10|332080|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN693471 (Marine virus AFVG_25M187, complete genome) position: , mismatch: 8, identity: 0.733

gtgcaattgttaatggagaagatggcactg	CRISPR spacer
tattgatacttaatggagaagatagcactg	Protospacer
   ..**  **************.******

25. spacer 2.10|332080|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN693736 (Marine virus AFVG_250M277, complete genome) position: , mismatch: 8, identity: 0.733

gtgcaattgttaatggagaagatggcactg	CRISPR spacer
gaaaatttgttaaaggagaagatggcagat	Protospacer
* . * ******* *************

26. spacer 2.10|332080|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN693559 (Marine virus AFVG_25M310, complete genome) position: , mismatch: 8, identity: 0.733

gtgcaattgttaatggagaagatggcactg	CRISPR spacer
tattgatacttaatggagaagatagcactg	Protospacer
   ..**  **************.******

27. spacer 2.10|332080|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MN693567 (Marine virus AFVG_25M189, complete genome) position: , mismatch: 8, identity: 0.733

gtgcaattgttaatggagaagatggcactg	CRISPR spacer
tattgatacttaatggagaagatagcactg	Protospacer
   ..**  **************.******

28. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP013857 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S26-C134, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tggagctactggtggtggttctgatgaagt	Protospacer
*   **************** *.****

29. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP014471 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tggagctactggtggtggttctgatgaagt	Protospacer
*   **************** *.****

30. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to JX519265 (Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tggagctactggtggtggttctgatgaagt	Protospacer
*   **************** *.****

31. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP013862 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S45-C148, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tggagctactggtggtggttctgatgaagt	Protospacer
*   **************** *.****

32. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP014470 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tggagctactggtggtggttctgatgaagt	Protospacer
*   **************** *.****

33. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to KT001919 (Klebsiella phage Miro, complete genome) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tacttctactggtggtggttctaatatatc	Protospacer
* ** *************** ****.  .

34. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP013858 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S28-C98, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tggagctactggtggtggttctgatgaagt	Protospacer
*   **************** *.****

35. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to MH598801 (Pelagibacter phage HTVC200P, complete genome) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
caatgttactggtggtggttatactgttta	Protospacer
.  **.***************** ** ..*

36. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP013859 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C166, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
tggagctactggtggtggttctgatgaagt	Protospacer
*   **************** *.****

37. spacer 2.17|332541|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP013708 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S26-C16, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tcctgctactggtggtggttataatgacca	CRISPR spacer
ttttagtactggtggtggtgataatgaaag	Protospacer
*..*. ************* *******  .

38. spacer 2.18|332607|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP019525 (Tenacibaculum phage PTm5 DNA, complete genome) position: , mismatch: 8, identity: 0.733

ttggtacacgcatattattttgtttctttt	CRISPR spacer
cctcatcacgcttatcattttgtttctttt	Protospacer
..    ***** ***.**************

39. spacer 2.18|332607|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to AP019524 (Tenacibaculum phage PTm1 DNA, complete genome) position: , mismatch: 8, identity: 0.733

ttggtacacgcatattattttgtttctttt	CRISPR spacer
cctcatcacgcttatcattttgtttctttt	Protospacer
..    ***** ***.**************

40. spacer 2.4|331683|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NC_014023 (Bacillus megaterium QM B1551 plasmid pBM700, complete sequence) position: , mismatch: 9, identity: 0.7

atcgggaagcttgccttggaaccaataatt	CRISPR spacer
cattctaagcttgccttagaaccaacaatg	Protospacer
  .   ***********.*******.***

41. spacer 2.10|332080|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134412 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 3) position: , mismatch: 9, identity: 0.7

gtgcaattgttaatggagaagatggcactg	CRISPR spacer
cacaaattgttaatgcaggagatggcaaga	Protospacer
    *********** **.********  .

42. spacer 2.16|332475|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 9, identity: 0.7

tttagtaccttcctctacttttacctctgt	CRISPR spacer
tttagtagcttcttctacttttaaagtata	Protospacer
******* ****.**********   .

43. spacer 2.19|332673|30|NZ_CP039378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT960615 (Hartmannibacter diazotrophicus strain E19T plasmid HDIAp1, complete sequence) position: , mismatch: 9, identity: 0.7

taaaaaaggcgggttcagtgacgaagctag	CRISPR spacer
cggaaaaggcgggatcggtgacgaagtatt	Protospacer
...********** **.*********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7173 : 42934

Lactobacillus_phage(56.0%)

terminase,holin,integrase,portal,tail,capsid

attL 12410:12426|attR 43980:43996

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146419205.1\|7173_7425_-\|holin	holin	NA	NA	NA	NA
WP_146419677.1\|7424_7652_-	hypothetical protein	NA	NA	NA	NA
WP_146419206.1\|7758_7905_-	XkdX family protein	NA	NA	NA	NA
WP_146419207.1\|7904_8213_-	DUF2977 domain-containing protein	NA	NA	NA	NA
WP_146419208.1\|8224_8992_-	hypothetical protein	NA	NA	NA	NA
WP_146419209.1\|8981_10811_-	hypothetical protein	A0A2K9VBY4	Lactobacillus_phage	3.9e-24	27.4
WP_146419210.1\|10810_11086_-	hypothetical protein	NA	NA	NA	NA
WP_146419211.1\|11075_11402_-	hypothetical protein	NA	NA	NA	NA
WP_146419212.1\|11391_12528_-	hypothetical protein	O03938	Lactobacillus_phage	1.7e-54	40.0
12410:12426	attL	NA	NA	NA	NA
WP_146419678.1\|12536_13334_-\|tail	phage tail family protein	D2KRB8	Lactobacillus_phage	2.0e-57	41.9
WP_146419213.1\|13386_18654_-	peptidoglycan DD-metalloendopeptidase family protein	A7DYB8	Streptococcus_phage	9.3e-55	26.3
WP_146419214.1\|18657_19290_-	hypothetical protein	U3PFU8	Lactobacillus_phage	3.3e-23	33.5
WP_146419215.1\|19296_19734_-	hypothetical protein	NA	NA	NA	NA
WP_146419216.1\|20386_20782_-\|capsid	capsid protein	Q5YA65	Bacillus_phage	1.7e-22	39.7
WP_146419217.1\|20768_21119_-\|capsid	capsid protein	U3PIU9	Lactobacillus_phage	5.1e-18	53.7
WP_146419218.1\|21118_21466_-\|capsid	capsid protein	O03932	Lactobacillus_phage	1.9e-20	44.4
WP_146419219.1\|21462_21879_-	hypothetical protein	NA	NA	NA	NA
WP_146419220.1\|21977_22889_-	hypothetical protein	Q6SED2	Lactobacillus_prophage	8.1e-108	64.3
WP_158632712.1\|22901_23459_-\|capsid	capsid protein	Q9T1B8	Listeria_phage	3.1e-25	41.4
WP_146419222.1\|23558_24692_-\|capsid	capsid protein	O03929	Lactobacillus_phage	3.9e-67	41.8
WP_146419223.1\|24688_26245_-\|portal	phage portal protein	O03928	Lactobacillus_phage	1.5e-157	57.2
WP_146419679.1\|26238_27597_-\|terminase	PBSX family phage terminase large subunit	A4L7R3	Lactococcus_phage	7.0e-156	59.3
WP_146419224.1\|27608_28109_-\|terminase	terminase small subunit	O03926	Lactobacillus_phage	1.9e-50	64.5
WP_146419225.1\|28260_29370_-	hypothetical protein	A0A2I6PCS6	Staphylococcus_phage	5.2e-08	30.5
WP_146419226.1\|29736_30180_-	hypothetical protein	NA	NA	NA	NA
WP_158632713.1\|30551_30695_-	hypothetical protein	NA	NA	NA	NA
WP_146419227.1\|30870_31107_-	hypothetical protein	NA	NA	NA	NA
WP_146419228.1\|31099_31345_-	hypothetical protein	O03923	Lactobacillus_phage	3.1e-14	45.2
WP_146419229.1\|31337_31871_-	DUF1642 domain-containing protein	A0A2P0ZKS6	Lactobacillus_phage	1.1e-11	50.7
WP_146419230.1\|31870_32233_-	hypothetical protein	NA	NA	NA	NA
WP_146419231.1\|32398_32716_-	hypothetical protein	NA	NA	NA	NA
WP_146419232.1\|32727_33252_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	4.6e-39	52.3
WP_146419233.1\|33271_33532_-	hypothetical protein	NA	NA	NA	NA
WP_146419234.1\|33500_34202_-	hypothetical protein	E9LUU3	Lactobacillus_phage	9.1e-83	65.0
WP_146419235.1\|34205_35078_-	helix-turn-helix domain-containing protein	A0A0P0I7Q1	Lactobacillus_phage	5.3e-40	37.8
WP_146419236.1\|35084_35852_-	single-stranded DNA-binding protein	Q8SDH6	Lactococcus_phage	1.3e-13	38.6
WP_146419237.1\|35851_36745_-	DUF1351 domain-containing protein	NA	NA	NA	NA
WP_146419238.1\|37103_37349_-	hypothetical protein	NA	NA	NA	NA
WP_146419680.1\|37349_37673_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_146419239.1\|37881_38103_-	hypothetical protein	NA	NA	NA	NA
WP_146419240.1\|38171_38459_+	hypothetical protein	NA	NA	NA	NA
WP_146419241.1\|38585_38807_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146419242.1\|38950_39274_+	helix-turn-helix domain-containing protein	A0A059T669	Listeria_phage	2.4e-22	56.6
WP_146419243.1\|39280_39673_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTX7	Clostridium_phage	8.3e-09	38.0
WP_146419681.1\|40006_40216_+	hypothetical protein	E9LUL0	Lactobacillus_phage	6.8e-18	70.5
WP_158632714.1\|40291_41119_+	DUF4393 domain-containing protein	NA	NA	NA	NA
WP_146419245.1\|41415_41664_+	hypothetical protein	NA	NA	NA	NA
WP_146419682.1\|41761_42934_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9I5C3	Streptococcus_phage	2.7e-39	29.9
43980:43996	attR	NA	NA	NA	NA

DBSCAN-SWA_2

54347 : 146630

116

Lactobacillus_phage(52.27%)

terminase,head,holin,tRNA,portal,integrase,tail,protease,capsid

attL 92569:92593|attR 135629:135653

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011673299.1\|54347_55085_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_011673298.1\|55084_55600_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_011673297.1\|55674_55947_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_002833575.1\|56305_57736_-	signal recognition particle protein	NA	NA	NA	NA
WP_002833574.1\|57753_58095_-	putative DNA-binding protein	NA	NA	NA	NA
WP_060743712.1\|58100_59321_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	2.7e-13	35.9
WP_146419247.1\|59338_62869_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_002833571.1\|62878_63577_-	ribonuclease III	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	2.6e-21	31.9
WP_002833570.1\|63673_63916_-	acyl carrier protein	M4QDG5	Prochlorococcus_phage	9.0e-06	49.3
WP_002833569.1\|63954_64998_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_146419248.1\|65014_67042_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_060743715.1\|67092_68787_-	DAK2 domain-containing protein	NA	NA	NA	NA
WP_002833566.1\|68808_69171_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_011673291.1\|69470_69656_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_060743716.1\|69699_70341_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_002833563.1\|70340_70988_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_060743717.1\|70984_71914_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_146419249.1\|71924_73448_-	Stk1 family PASTA domain-containing Ser/Thr kinase	A0A0H4Y184	Salmon_gill_poxvirus	9.1e-19	28.5
WP_002833560.1\|73444_74191_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	G9BWD9	Planktothrix_phage	2.8e-05	24.2
WP_146419250.1\|74199_75534_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_060743718.1\|75517_76480_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	5.7e-11	39.3
WP_146419251.1\|76502_78923_-	primosomal protein N'	NA	NA	NA	NA
WP_146419252.1\|78937_80131_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	5.6e-40	30.6
WP_002833554.1\|80242_80452_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002833553.1\|80453_81068_-	guanylate kinase	A0A223FN12	Murmansk_poxvirus	1.8e-18	32.9
WP_011673284.1\|81363_81699_+	hypothetical protein	NA	NA	NA	NA
WP_060743721.1\|81770_83447_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002833550.1\|83458_83917_-	arginine repressor, DNA-binding domain protein	NA	NA	NA	NA
WP_146419253.1\|83925_84744_-	TlyA family rRNA (cytidine-2'-O)-methyltransferase	NA	NA	NA	NA
WP_023440278.1\|84757_85648_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_002833547.1\|85640_85877_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_002833546.1\|85876_87220_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	2.1e-43	30.9
WP_002833545.1\|87220_88072_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.9e-38	39.7
WP_002833544.1\|88197_88599_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_002833543.1\|88598_89027_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_002833542.1\|89044_89608_-	elongation factor P	NA	NA	NA	NA
WP_002833541.1\|89732_90020_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_011673282.1\|90043_90370_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_002833539.1\|90391_90700_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_011673281.1\|90829_91459_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_146419254.1\|91791_92304_-	hypothetical protein	NA	NA	NA	NA
92569:92593	attL	NA	NA	NA	NA
WP_146419255.1\|92869_93481_+	hypothetical protein	NA	NA	NA	NA
WP_146419256.1\|93505_94645_-	N-acetylmuramoyl-L-alanine amidase	Q9MCC6	Lactobacillus_phage	7.1e-93	49.0
WP_146419257.1\|94628_94868_-\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	5.0e-09	54.4
WP_146419683.1\|94867_95152_-	hypothetical protein	NA	NA	NA	NA
WP_146419258.1\|95201_95348_-	XkdX family protein	NA	NA	NA	NA
WP_146419259.1\|95347_95656_-	DUF2977 domain-containing protein	Q7M292	Lactobacillus_phage	6.7e-14	52.0
WP_146419260.1\|95667_96435_-	hypothetical protein	NA	NA	NA	NA
WP_146419261.1\|96424_98248_-	hypothetical protein	A0A2K9VBY4	Lactobacillus_phage	3.8e-24	27.6
WP_146419262.1\|98249_98576_-	hypothetical protein	NA	NA	NA	NA
WP_146419263.1\|98572_99343_-	hypothetical protein	D2KRC0	Lactobacillus_phage	2.5e-17	28.2
WP_146419264.1\|99326_101300_-	hypothetical protein	E9LUJ4	Lactobacillus_phage	1.0e-99	33.9
WP_005917197.1\|101296_102133_-\|tail	phage tail family protein	A0A0M7RF73	Lactobacillus_phage	3.4e-44	35.8
WP_146419684.1\|102144_106128_-\|tail	phage tail tape measure protein	A0A2P0ZLF1	Lactobacillus_phage	1.6e-152	53.3
WP_146419265.1\|106634_106847_-\|tail	phage tail tape measure protein	A0A2P0ZLD9	Lactobacillus_phage	8.4e-16	60.9
WP_146419266.1\|106888_107200_-	hypothetical protein	NA	NA	NA	NA
WP_146419267.1\|107257_107551_-	collagen-like protein	NA	NA	NA	NA
WP_146419268.1\|107563_108217_-\|tail	phage tail protein	A0A2P0ZLF5	Lactobacillus_phage	9.7e-71	67.2
WP_146419269.1\|108229_108643_-	hypothetical protein	A0A2P0ZLE4	Lactobacillus_phage	2.1e-26	45.0
WP_146419270.1\|108639_109047_-	hypothetical protein	A0A2P0ZLD7	Lactobacillus_phage	2.7e-39	60.9
WP_146419271.1\|109022_109424_-	hypothetical protein	A0A2P0ZLD1	Lactobacillus_phage	6.9e-27	45.9
WP_146419272.1\|109389_109698_-\|head,tail	phage gp6-like head-tail connector protein	A8ATA0	Listeria_phage	3.9e-14	45.7
WP_146419273.1\|109834_111019_-\|capsid	phage major capsid protein	A0A2P0ZLD6	Lactobacillus_phage	4.4e-114	56.9
WP_146419274.1\|111043_111802_-\|protease	Clp protease ClpP	A0A2P0ZLE3	Lactobacillus_phage	1.9e-94	71.6
WP_146419275.1\|111785_112931_-\|portal	phage portal protein	A0A2P0ZLC9	Lactobacillus_phage	1.3e-110	53.2
WP_146419276.1\|112952_114635_-\|terminase	terminase large subunit	A0A2P0ZLE5	Lactobacillus_phage	1.9e-198	60.0
WP_146419277.1\|114631_114952_-\|terminase	P27 family phage terminase small subunit	A0A2P0ZLC8	Lactobacillus_phage	2.5e-11	44.6
WP_158632715.1\|115296_115440_-	hypothetical protein	NA	NA	NA	NA
WP_146419685.1\|115430_115757_-	HNH endonuclease	A0A2P0ZLC6	Lactobacillus_phage	7.3e-27	59.1
WP_146419279.1\|115741_116170_-	hypothetical protein	NA	NA	NA	NA
WP_158632716.1\|116173_116332_-	hypothetical protein	NA	NA	NA	NA
WP_099299940.1\|116328_116511_-	hypothetical protein	NA	NA	NA	NA
WP_146419280.1\|116572_116986_-	hypothetical protein	NA	NA	NA	NA
WP_146419686.1\|117411_117819_-	DUF1492 domain-containing protein	A0A2P0ZLC0	Lactobacillus_phage	7.7e-42	64.7
WP_146419281.1\|118204_120076_-	DNA primase	A0A1B1P7L5	Bacillus_phage	7.3e-228	60.7
WP_146419282.1\|120084_120414_-	hypothetical protein	NA	NA	NA	NA
WP_146419283.1\|120491_122177_-	hypothetical protein	A0A1B1P7M5	Bacillus_phage	2.7e-197	58.4
WP_146419284.1\|122182_122383_-	hypothetical protein	NA	NA	NA	NA
WP_146419285.1\|122383_122662_-	hypothetical protein	NA	NA	NA	NA
WP_146419286.1\|122662_122971_-	hypothetical protein	NA	NA	NA	NA
WP_146419287.1\|123004_124126_-	DNA polymerase III subunit beta	NA	NA	NA	NA
WP_146419288.1\|124297_124492_-	hypothetical protein	NA	NA	NA	NA
WP_146419289.1\|124488_124728_-	hypothetical protein	NA	NA	NA	NA
WP_146419290.1\|124727_124946_-	hypothetical protein	NA	NA	NA	NA
WP_146419291.1\|124938_125484_-	DUF1642 domain-containing protein	NA	NA	NA	NA
WP_146419292.1\|125487_125682_-	hypothetical protein	NA	NA	NA	NA
WP_146419293.1\|125683_125878_-	hypothetical protein	NA	NA	NA	NA
WP_146419294.1\|125937_126414_-	DUF669 domain-containing protein	A0A1B1P7N3	Bacillus_phage	7.4e-36	52.2
WP_146419295.1\|126413_126689_-	hypothetical protein	NA	NA	NA	NA
WP_146419296.1\|126681_126948_-	hypothetical protein	NA	NA	NA	NA
WP_146419297.1\|126947_128771_-	AAA family ATPase	A0A1B1P7N0	Bacillus_phage	9.4e-164	56.0
WP_146419298.1\|129103_129436_-	hypothetical protein	NA	NA	NA	NA
WP_146419299.1\|129438_130671_-	DEAD/DEAH box helicase	A0A1B1P7L4	Bacillus_phage	8.6e-169	69.8
WP_146419300.1\|130798_131338_+	hypothetical protein	NA	NA	NA	NA
WP_146419301.1\|131415_131661_-	hypothetical protein	A0A182BQC3	Lactococcus_phage	2.4e-14	60.3
WP_158632717.1\|131763_132105_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_146419303.1\|132250_132439_-	XRE family transcriptional regulator	A0A2P0ZL97	Lactobacillus_phage	2.8e-07	43.5
WP_069824988.1\|132739_133081_+	helix-turn-helix transcriptional regulator	A0A1S5SEP7	Streptococcus_phage	2.6e-19	40.7
WP_146419304.1\|133090_133525_+	ImmA/IrrE family metallo-endopeptidase	A0A0M7RF74	Lactobacillus_phage	8.0e-05	30.2
WP_146419305.1\|133585_134242_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_146419306.1\|134388_135528_+\|integrase	tyrosine-type recombinase/integrase	E9LUK6	Lactobacillus_phage	1.6e-89	49.6
WP_023440273.1\|135865_136069_+	membrane protein	NA	NA	NA	NA
135629:135653	attR	NA	NA	NA	NA
WP_002833535.1\|136208_136436_-	hypothetical protein	NA	NA	NA	NA
WP_146419307.1\|136739_137279_-	2-deoxyuridine 5-triphosphate nucleotidohydrolase	A0A290GJJ6	Caldibacillus_phage	2.8e-07	25.7
WP_002833533.1\|137288_138206_-	hypothetical protein	NA	NA	NA	NA
WP_002833532.1\|138198_139074_-	hypothetical protein	NA	NA	NA	NA
WP_002833531.1\|139222_140563_-	type I glutamate--ammonia ligase	M1NM71	Moumouvirus	2.5e-12	22.8
WP_023440271.1\|140597_140963_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_146419308.1\|141043_142300_-	aluminum resistance protein	NA	NA	NA	NA
WP_060743724.1\|142283_143216_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_055126203.1\|143217_143952_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.2e-13	35.2
WP_002833525.1\|144034_144211_+	DUF3042 family protein	NA	NA	NA	NA
WP_002833524.1\|144264_144684_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_002833523.1\|144715_145678_-	ROK family glucokinase	NA	NA	NA	NA
WP_002833522.1\|145695_145908_-	YqgQ family protein	NA	NA	NA	NA
WP_060743725.1\|145940_146630_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

311942 : 321083

Brochothrix_phage(14.29%)

integrase

attL 305416:305430|attR 327721:327735

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
305416:305430	attL	NA	NA	NA	NA
WP_061812609.1\|311942_312134_-	hypothetical protein	D7RWL9	Brochothrix_phage	6.0e-05	42.6
WP_061812608.1\|312136_312442_-	hypothetical protein	NA	NA	NA	NA
WP_061812607.1\|312709_313030_-	hypothetical protein	NA	NA	NA	NA
WP_158632718.1\|313043_313676_-	hypothetical protein	NA	NA	NA	NA
WP_146419371.1\|313672_314548_-	ATP-binding protein	A0A2D1GQF9	Lysinibacillus_phage	1.2e-12	24.7
WP_146419372.1\|314550_315495_-	DUF4373 domain-containing protein	A8ATL0	Listeria_phage	2.6e-16	27.3
WP_146419373.1\|315507_315975_-	hypothetical protein	NA	NA	NA	NA
WP_146419374.1\|316191_316797_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	8.2e-40	43.3
WP_061812601.1\|316860_317127_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_055126102.1\|317142_317370_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064635649.1\|317536_318184_+	helix-turn-helix transcriptional regulator	Q8LTN5	Lactococcus_phage	6.6e-11	50.7
WP_055126101.1\|318449_319598_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	9.4e-61	36.7
WP_146419375.1\|319928_321083_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	6.8e-59	36.6
327721:327735	attR	NA	NA	NA	NA

DBSCAN-SWA_4

397021 : 406260

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002834073.1\|397021_397615_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.6e-56	54.3
WP_002834074.1\|397662_397935_-	hypothetical protein	NA	NA	NA	NA
WP_146419413.1\|398019_400314_-	N-acetylmuramidase	A0A0N7IR99	Lactobacillus_phage	5.0e-37	47.4
WP_002834077.1\|400490_401420_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	4.0e-54	39.4
WP_023440059.1\|401432_402434_-	YvcK family protein	A1IMD5	Streptococcus_phage	3.9e-95	56.7
WP_002834080.1\|402430_403318_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-11	33.1
WP_023440058.1\|403416_406260_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.9e-304	54.9

DBSCAN-SWA_5

417462 : 425080

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023440049.1\|417462_418221_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-18	30.5
WP_060743357.1\|418234_419035_-	phosphate ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.4e-09	42.0
WP_002834456.1\|419052_419940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_011673073.1\|419940_420849_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_060743355.1\|420848_421730_-	phosphate ABC transporter substrate-binding protein PstS family protein	H6WG65	Cyanophage	2.7e-07	25.5
WP_146419418.1\|421891_423277_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	6.3e-27	33.3
WP_002834460.1\|423248_423953_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.9e-38	37.3
WP_146419419.1\|423963_425080_-	peptide chain release factor 2	B5LLF2	Mycobacterium_phage	1.9e-05	47.1

DBSCAN-SWA_6

795132 : 841838

Enterococcus_phage(33.33%)

integrase,bacteriocin,transposase

attL 788449:788463|attR 825940:825954

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
788449:788463	attL	NA	NA	NA	NA
WP_146419488.1\|795132_795990_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.1e-146	97.4
WP_146419489.1\|796810_798487_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_011673114.1\|798507_799488_-	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	9.3e-17	27.2
WP_146419490.1\|799468_800974_-	sucrose-6-phosphate hydrolase	NA	NA	NA	NA
WP_055126657.1\|801229_803185_+	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA
WP_055126658.1\|803204_805364_+	alpha-galactosidase	NA	NA	NA	NA
WP_055126659.1\|805443_806310_+	ROK family protein	NA	NA	NA	NA
WP_021730470.1\|806387_806594_-	integral membrane protein	NA	NA	NA	NA
WP_146419491.1\|806691_807621_+\|transposase	IS30 family transposase	H7BW47	unidentified_phage	3.0e-25	34.4
WP_055126660.1\|808861_811063_-	alpha-galactosidase	NA	NA	NA	NA
WP_011673107.1\|811120_813049_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_011673106.1\|813284_814115_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_055126661.1\|814561_814786_-	hypothetical protein	NA	NA	NA	NA
WP_003606447.1\|815377_815626_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_146419492.1\|817116_818490_-	MFS transporter	NA	NA	NA	NA
WP_056979404.1\|818529_820059_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_055126665.1\|820185_820377_+	hypothetical protein	NA	NA	NA	NA
WP_146419493.1\|822053_822728_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q716C2	Shigella_phage	8.1e-12	31.8
WP_060743983.1\|822783_823734_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	9.4e-99	54.6
WP_060743984.1\|823748_824675_-	ribonucleoside-diphosphate reductase	A0A096XT60	Enterococcus_phage	4.3e-40	33.0
WP_146419494.1\|824782_826951_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.6e-255	60.2
825940:825954	attR	NA	NA	NA	NA
WP_146419495.1\|826957_827410_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_146419496.1\|828284_829622_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_146419497.1\|829687_831160_-	amino acid permease	NA	NA	NA	NA
WP_146419498.1\|831326_831638_+	hypothetical protein	NA	NA	NA	NA
WP_146419499.1\|832450_833044_-	AlwI family type II restriction endonuclease	NA	NA	NA	NA
WP_060743990.1\|833556_834507_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_146419500.1\|836732_837662_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	7.4e-24	28.9
WP_002834573.1\|837808_838147_-	pediocin PA-1 immunity protein	NA	NA	NA	NA
WP_146419695.1\|838184_838373_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_146419502.1\|838888_840238_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_094104182.1\|840303_840741_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_146419503.1\|840968_841838_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	3.2e-29	31.2

DBSCAN-SWA_7

1060649 : 1068905

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023440818.1\|1060649_1061501_+	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	2.1e-12	34.9
WP_002834122.1\|1061514_1061700_+	DUF951 domain-containing protein	NA	NA	NA	NA
WP_060743550.1\|1061916_1063023_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_023440817.1\|1063051_1063756_+	DUF1129 domain-containing protein	NA	NA	NA	NA
WP_146419697.1\|1063777_1064920_+	guanosine monophosphate reductase	A0A1V0SHK8	Klosneuvirus	5.3e-64	33.8
WP_146419545.1\|1065050_1065548_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EI66	Megavirus	2.2e-14	38.1
WP_002834114.1\|1065630_1066320_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.7e-37	37.3
WP_011673829.1\|1066331_1067468_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.8e-25	25.8
WP_060743552.1\|1067648_1068905_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.8e-07	23.1

DBSCAN-SWA_8

1292246 : 1301113

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146419581.1\|1292246_1294412_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.1e-248	59.9
WP_011673696.1\|1294513_1294744_-	glutaredoxin-like protein NrdH	A0A0M7REK7	Lactobacillus_phage	8.0e-12	48.1
WP_146419582.1\|1294955_1295561_+	methyltransferase	NA	NA	NA	NA
WP_060743850.1\|1295553_1296039_+	nucleoside deaminase	A0A2H4PQS8	Staphylococcus_phage	1.8e-05	31.6
WP_060743849.1\|1296250_1297996_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.8e-56	48.4
WP_002833269.1\|1298011_1298326_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_002833270.1\|1298352_1298952_+	recombination protein RecR	NA	NA	NA	NA
WP_002833271.1\|1299116_1299746_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.0e-52	52.7
WP_002833272.1\|1299761_1300097_+	hypothetical protein	NA	NA	NA	NA
WP_060743848.1\|1300096_1301113_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.3e-33	30.8

DBSCAN-SWA_9

1309942 : 1318506

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011673684.1\|1309942_1310425_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.6e-20	42.9
WP_060743844.1\|1310408_1311548_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_060743843.1\|1311547_1312276_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	3.6e-42	43.0
WP_011673681.1\|1312268_1312523_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_060743842.1\|1312525_1313200_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_146419585.1\|1313217_1315425_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-146	41.6
WP_023440671.1\|1315409_1316879_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-56	33.3
WP_060743839.1\|1316878_1317928_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D8KLC2	Synechococcus_phage	5.2e-58	40.2
WP_060743838.1\|1317924_1318506_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.7e-23	35.2

DBSCAN-SWA_10

1682438 : 1692056

Staphylococcus_phage(37.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002833201.1\|1682438_1682909_+	nucleoside deoxyribosyltransferase	A0A1G5S9Z4	Enterococcus_phage	3.8e-16	40.1
WP_002833200.1\|1682963_1683848_-	YitT family protein	M1Q1P6	Streptococcus_phage	2.1e-52	38.1
WP_060743606.1\|1684101_1685310_+\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	3.8e-36	30.5
WP_146419638.1\|1685312_1687190_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.9e-51	30.5
WP_011673474.1\|1687202_1688153_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	3.4e-117	62.7
WP_146419639.1\|1688181_1688667_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	6.0e-25	39.6
WP_060743608.1\|1688788_1690240_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_023440467.1\|1690236_1690974_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-34	40.4
WP_060743609.1\|1691210_1692056_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.3e-16	34.4

DBSCAN-SWA_11

1811599 : 1817953

Lactobacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002833631.1\|1811599_1812121_-	DUF4373 domain-containing protein	A0A0P0HRQ2	Lactobacillus_phage	4.0e-43	57.1
WP_060744016.1\|1812244_1812985_-	3-oxoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	4.9e-18	31.3
WP_060744015.1\|1812985_1813207_-	DUF2829 domain-containing protein	G3MBC9	Bacillus_virus	3.9e-08	32.6
WP_011673329.1\|1813223_1813706_-	QueT transporter family protein	E7DN70	Pneumococcus_phage	4.9e-11	35.0
WP_002833627.1\|1813942_1814413_+	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_146419673.1\|1814541_1814769_+	DUF378 domain-containing protein	NA	NA	NA	NA
WP_060744014.1\|1814872_1815997_-	molecular chaperone DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	1.3e-22	33.2
WP_011673326.1\|1816093_1817953_-	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	5.3e-138	47.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039378

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection