CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042344	Comamonas sp. NLF-7-7 strain NLF 7-7 chromosome, complete genome	4 crisprs	Cas9_archaeal,csa3,DEDDh,RT,PD-DExK,DinG	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042344_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042344_1

2309586-2309706

Orphan

Consensus_repeat	Method
GCTTCGACGATGCACGGATTTAGCCGGCTAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042344_1

>merge|NZ_CP042344|1|2309586-2309706|CRISPRCasFinder
GCTTCGACGATGCACGGATTTAGCCGGCTAAATTGAGCTCCCTAATGCACTCTAGTCCGTGAGCGCTGTATGGCACAGTACAACTGCAGCTTCGACGATGCACCGATTTAGCCGGCTAAAT

>NZ_CP042344|1|1|2309586-2309706|CRISPRCasFinder
GCTTCGACGATGCACGGATTTAGCCGGCTAAAT	TGAGCTCCCTAATGCACTCTAGTCCGTGAGCGCTGTATGGCACAGTACAACTGCA
GCTTCGACGATGCACCGATTTAGCCGGCTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042344.1\|WP_146913124.1\|2301572_2302868_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP042344.1\|WP_146913135.1\|2319587_2321276_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913127.1\|2305535_2306513_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP042344.1\|WP_146913132.1\|2312029_2312251_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|283558
NZ_CP042344.1\|WP_146913120.1\|2298866_2299685_-\|zinc-dependent-peptidase	unknown	unknown	gnl\|CDD\|377621
NZ_CP042344.1\|WP_146913126.1\|2304003_2305380_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP042344.1\|WP_146911817.1\|2318520_2319504_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP042344.1\|WP_146913122.1\|2300466_2300994_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP042344.1\|WP_146913128.1\|2306564_2307524_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP042344.1\|WP_146913125.1\|2302908_2303877_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042344.1\|WP_146913133.1\|2312466_2313258_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376986
NZ_CP042344.1\|WP_146913123.1\|2301003_2301576_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP042344.1\|WP_146914178.1\|2313654_2314920_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP042344.1\|WP_146913134.1\|2314935_2315349_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913131.1\|2310606_2310924_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP042344.1\|WP_146913130.1\|2310238_2310610_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NZ_CP042344.1\|WP_146914179.1\|2315974_2318419_+\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|274228
NZ_CP042344.1\|WP_146913136.1\|2321868_2322615_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913121.1\|2299684_2300464_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP042344.1\|WP_146913129.1\|2307579_2308839_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843

Protein	Function_ID	Function_description	E-value
NZ_CP042344.1\|WP_146913124.1\|2301572_2302868_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.36616e-19
NZ_CP042344.1\|WP_146913127.1\|2305535_2306513_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP042344.1\|WP_146913132.1\|2312029_2312251_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|283558	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	1.21526e-10
NZ_CP042344.1\|WP_146913120.1\|2298866_2299685_-\|zinc-dependent-peptidase	gnl\|CDD\|377621	pfam06167, Peptidase_M90, Glucose-regulated metallo-peptidase M90. MtfA (earlier known as YeeI) is a transcription factor A that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (ptsG) system, the major glucose transporter in E.coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in Escherichia coli. MtfA is found to be a glucose-regulated peptidase, whose activity is regulated by binding to Mlc available in the cytoplasm, which in turn has been released from EIICBGlc during times when no glucose is taken up. A physiologically relevant target for this peptidase is not yet known.	1.91625e-94
NZ_CP042344.1\|WP_146913126.1\|2304003_2305380_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP042344.1\|WP_146911817.1\|2318520_2319504_-\|IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	4.32595e-35
NZ_CP042344.1\|WP_146913122.1\|2300466_2300994_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	2.00197e-75
NZ_CP042344.1\|WP_146913128.1\|2306564_2307524_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.40063e-60
NZ_CP042344.1\|WP_146913125.1\|2302908_2303877_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.55884e-10
NZ_CP042344.1\|WP_146913133.1\|2312466_2313258_+\|hypothetical-protein	gnl\|CDD\|376986	pfam03090, Replicase, Replicase family. This is a family of bacterial plasmid DNA replication initiator proteins. pfam01051 is a similar family. These RepA proteins exist as monomers and dimers in equilibrium: monomers bind directly to repeated DNA sequences and thus activate replication; dimers repress repA transcription by binding an inversely repeated DNA operator. Dimer dissociation can occur spontaneously or be mediated by Hsp70 chaperones.	6.73169e-37
NZ_CP042344.1\|WP_146913123.1\|2301003_2301576_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	8.1136e-80
NZ_CP042344.1\|WP_146914178.1\|2313654_2314920_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.02363e-129
NZ_CP042344.1\|WP_146913131.1\|2310606_2310924_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	6.83885e-31
NZ_CP042344.1\|WP_146913130.1\|2310238_2310610_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	1.89577e-55
NZ_CP042344.1\|WP_146914179.1\|2315974_2318419_+\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	1.16299e-17
NZ_CP042344.1\|WP_146913121.1\|2299684_2300464_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	5.19948e-83
NZ_CP042344.1\|WP_146913129.1\|2307579_2308839_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0

>NZ_CP042344.1|WP_146913129.1|2307579_2308839_+|aspartate-kinase
MALYVHKYGGTSMGSTERIRNVARRVAKWVRAGHQVVVVPSAMSGETNRLLGLAKEIWPGKAGDAYHRELDQLAATGEQASSALLAIALQAEGLQAVSFTGWQVPVRTDSSYTKARIESIDDQHVRAELDAGKVVIVTGFQGIDAGNNITTLGRGGSDTSAVAIAAAIRAHECLIYTDVDGVYTTDPRVVPEARRLNTLSFEEMLEMASLGSKVLQIRSVEFAGKYKVPLRVLSSFTPWDIDIEEEAKSGTLITLEEDEQMEKAIVSGIAFSRDEAKISILGVPDHPGVAYRILGAVADARVDVDVIIQNVSKDGKTDFSFTVPRADLERASLLLRDKVLPELGTDQLVTDAKIAKVSIVGIGMRSQVGVASTMFRTLSEEGINIKMISTSEIKTSVVIDEKYVELAVRALHRAFGLDQ
>NZ_CP042344.1|WP_146913128.1|2306564_2307524_+|tRNA-lysidine(34)-synthetase-TilS
MTQPFEAAIAAFAPGLPLAVGLSGGADSSALLLACARRWPGQVHAFHVHHGLQQAGDDFVRHCEALCNRLQVPLQVARVDARHAPGQSPEDAARRARYQAFSALAQSASGQPAIKNIALAHHADDQVETLLLALSRGAGMAGLAAMPARWQREGLLWHRPLLQVAGGAVRQWLAEQGVGWIQDPSNRDERYTRNRIRLRLLPVLDEVFPQFRDTFARSSRHAAEATALLRELAEADLAQVGVPPAIRALQQLGAARQANVLRHWLREHCATTPSSAQLQALLAQIKACTTRGHCIHLKVGSGFVQRNNAVLDWYNSALL
>NZ_CP042344.1|WP_146913127.1|2305535_2306513_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MAKKTFLDFEQPIAELESKIEELRYVDSESAVDISEEIGQLTKKSQQLTKDIYSNLTPWQITKIARHPDRPYTLDYVAEIFTEFTELHGDRHFADDQSIIGGLARFNGNACMVIGHQKGRGTKERAARNFGMTRPEGYRKALRLMKTAERFKLPVFTFVDTPGAFPGIDAEERGQSEAIGRNIYEMARLEVPIITTIIGEGGSGGALAISVADQLIMLQYSVYSVISPEGCASILWKTSERAQDAAEAMGVTAHRLKALGVIDKIVNEPVGGAHRDPKQMAAYLKRALGDAWRQLADLKLKELLDRRYERLRSYGRFTDTKAESR
>NZ_CP042344.1|WP_146913126.1|2304003_2305380_+|cysteine--tRNA-ligase
MSLRIYSTLGRAVQPFAPMQPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRTSGWRVTYVRNITDIDDKIIQRAVENGESIRSLTNRMIAALHEDADALGIERPTHEPRATDYVPQMLTLIGRLQDRGLAYQAGEGGDVNFAVRNFPGYGRLSGKTLDELNAGERVAVQDGKRDPLDFVLWKSAKPAEPEEVKWASPWGPGRPGWHIECSAMGCALLGESFDIHGGGADLAFPHHENEIAQSEGASGKPFARVWMHNGFINVDNEKMSKSLGNFFTIRDVLKVYDAETVRFFIVRSHYRSPLNYSDVHLDDARAALKRLYTALDAVAPEPIELDWSEPHAARFKAAMDEDFGTPEAVAVLFDLAGEVNRSRSGALAGLLKALGACLGLLQADPQSFLQAGGQLDEAAISAQIAARSAAKAARDWAAADRIRAQLLESGIVLKDGPEGTTWEAL
>NZ_CP042344.1|WP_146913125.1|2302908_2303877_-|tetratricopeptide-repeat-protein
MLPLRHPLARLLQTAAALLLCTAAVHASDYADITALLRDGKASQALVQVEQRLAATPKDPQLRFLHGVAQSESRQTRAAIETFTELTRDYPELPEPYNNLAVLYAQENQLDKARAALEMAIRTNPSYATAHENLGDIYAKLAGQAYNKALQLDGSSSESLKPKLALIRDLVPARPVNTAEATPAAQASPAPAAAPAAATSPDASAADAQAAEQAVAHAVQAWARAWSDKDMQAYLGAYADDFSPAGQQSRTAWEKDRHARIVGKSQISVKLHDLKIKVQGEQASASFRQEYQGDALRVNSSKTLTLIRQDGNWKITRESVGR
>NZ_CP042344.1|WP_146913124.1|2301572_2302868_-|L,D-transpeptidase-family-protein
MQPFMTDFARHHGRFALVVLALAALLAGPVPAFAQPGSTAARTHKKPAKARTPAPAQGADAEARLLAVYALTRAGQAGKALEQAQKLVRDYPNFHLAQLTLGDLLSARMRPLRQLGDVPQAPPGTALQELRTESRQRVAAHGQLAQRPPGSIPTQFLQLAPRYRHAIAVDASLSRLYLFENTAAGLRLVADYYASVGKLGIEKSSEGDQRTPLGVYFITARLDPATLQDIYGIGALPLNYPNALDQARGKTGSGIWLHGTPSNQFARAPLATDGCVALSNPDLARLLQRVEPRTTPVVIAGALQWQAPAAQQSERERREFQAVLEDWSRAKTRGNLQQLISYYAPDFRARKNRVELGLSDWALELQNETTALAGRVLQLKELSLLRWVDTHETMVVTFGEVAQGERTGPVRRQYWTRQGTQWRIFYEGIIG
>NZ_CP042344.1|WP_146913123.1|2301003_2301576_-|peptidyl-prolyl-cis-trans-isomerase
MTSRRSACLALLVTAAALPAHAADDSQPKVKLATSLGDIVVQLDCAKAPKTVDNFLQYVREQHYDGTIFHRVINGFMIQGGGFTTDMVQKPTRAPVPLEADNGLKNDAYTIAMARTANPNSATAQFFINVKDNDGLNAPKPDGHGYAVFGKVIEGKEVVDKIKTVATGNRGPHQNVPTTPVVIESATIVP
>NZ_CP042344.1|WP_146913122.1|2300466_2300994_-|peptidyl-prolyl-cis-trans-isomerase
MSHPQVQLNLTLNTADGAKPGVIVLELDSDKAPESSANFLAYVNKGHYDGTIFHRVIKNFMIQGGGFTADMQQKPTDAPIKNEAANGLKNDKYTVAMARTGDPHSATAQFFINVVDNDFLNHTAPSGQGWGYAVFGKVVQGQDVVDEIRKVRTTRKGYHDDVPSEAVVIDKAVAL
>NZ_CP042344.1|WP_146913121.1|2299684_2300464_-|UDP-2,3-diacylglucosamine-diphosphatase
MPAATPPIARLDVPAQWRAVDCISDLHLDAAHPATLAALLDYLATTPADAVCILGDLFEVWVGDDVLQDAASFEARACALLRQARERLPIWFMHGNRDFLIGAGFARATGIALLEDPTLLQLGEQRWLLSHGDALCLEDTPYQQFRAMVRAPDWQSRWLSQSLTQRQAQARAMRGESEARKHAQALWADVDAAAAGAWLQAAGAQTLVHGHTHRPAEHALAAGRRRLVLSDWDLDHAPRRAQALRLGTTGAQRIELAGG
>NZ_CP042344.1|WP_146913120.1|2298866_2299685_-|zinc-dependent-peptidase
MRRAVARLLQRLVAMVAPVRPISDALWLPTIAHYGFLRALSLQEQAKLRVLAALFLRRKEFTGAHGLEVSDAMAVAIAAQACLPLLHWGEPRQALAWYDDFVGIVVHPTEALALRSSMDAAGVVHHYHEVLLGEAMEHGPIMLVWPAVHEAGQRHSSVVIHEFMHKIDMKAGRADGCPPLPPGFMGMDSVREARRLWRRVWSAAYVDFRDRVRMAERFGEPWPWLDAYGASAPGEFFAVACEAWFVDPPRFAEEFPALVPLLKAFFQPVQPG
>NZ_CP042344.1|WP_146913130.1|2310238_2310610_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTRVFKTRHFQRWMRKTELTDAVLCKAVQEMAAGLIDADLGGSVVKKRVGLAGRGKRGGVRTLVATNKGNRWFFMFGFEKNERANISDEELEGLQIIAADLLARTGPQLDEAVADGALQEICQ
>NZ_CP042344.1|WP_146913131.1|2310606_2310924_+|helix-turn-helix-domain-containing-protein
MTTKTKSRILEAVHETAGDLHRLGFIDKRKMQKYDALCLEPVQDYDASKVKALRERLHLSQAVLASVLNTSTSTVRKWEVGDKRPSGPSQKLLDILERKGLEAVL
>NZ_CP042344.1|WP_146913132.1|2312029_2312251_+|AlpA-family-phage-regulatory-protein
MKTLIIPEAQQLVRIGTVLQILPVSQSAWYRMITEGYAPKPIRLGPRSVAWRLDDILSLARGEWHPSEQRAAA
>NZ_CP042344.1|WP_146913133.1|2312466_2313258_+|hypothetical-protein
MQLNPPAAWAWLVLDIDRLGGALAWERGSLPPPTYVAANRENGHAHIGYALASPVCTTQAARLLPLRYLASVSQAYIDAAGADGAFRGPLAKNPLHERWRVWEPAGMQVYELSYLAEFVKLLPLRPRPVGLGRNCDLFDSLRMWAYSAVRDFWRPTGEKAWRNACERRAASLNTFAEPLPLAEVRAIARSVAKYVWGKFTPAGFRAVQAARGKKGGVASARVRAAASEDKRASARLIRAAGMSVRAIAAELCAPKSSVARWIA
>NZ_CP042344.1|WP_146914178.1|2313654_2314920_+|IS256-family-transposase
MKNAAIAAKMAALPAIPKELIEQFVSGPMTSDAVNAATVAFKKALIERALGAEMSHHLGYPNGASKPEAGTANQRNGRSAKTVLTDDGPLRIEVPRDRAGSFEPVLIPKHERRFTGFDDKIVAMYARGMTMREIQGFLLESYAVEVSPEFISSVTDAVMAEVSAWQARPLEPMYPVVFFDALRVKIKEDAVVRNKAIYLALGVLPDGTRDILGLWIEGTEGAKFWMKVFNDLKTRGVNDILIAVTDGLKGMPEALAAVYPATTLQTCIVHLIRNSLDYASWKDRKLLAAAIRPIYTATSAEAAQVELEAFEQGPWGTKFPTVVAAWRRAWDRVIPFFAFPPSIRRVIYTTNAIESINARLRKIIKTRGHFPSDDAASKLIWLALRNITADWGRAAKDWKEAMNQFAILYEDRFTQPAHGAN
>NZ_CP042344.1|WP_146913134.1|2314935_2315349_+|hypothetical-protein
MNTWLNQGRLRRPGRGLKKWEKLVESKSTNRLEHKNPDTPEAWVSGGITFLYDVDLRTAYTRPPTSRKPSAAKLAEERRERLCSEWEHLKDQALFSVRDYFKEGGSGAKIPDIFHVKLDSYSRGLNNRSAKFWLNHG
>NZ_CP042344.1|WP_146914179.1|2315974_2318419_+|HigA-family-addiction-module-antidote-protein
MDTSEVRHPGERIKAEVFPANMSVTKAAELIGVGRPALSNLLNGKASLTADMATRIEKAFGFPRKDLLEMQAQYDAFKAKQKSIPTNAKAYVPPFLAIKANDIESWASHNIVARSRFAVFLRTLVHSTGSGLTEVDFPGNDDSQRAGWDGRIVANEGTAWVPAGHSGWEFGTNEDPKTKADKDYKKSVAATDANDRASMEFVFVTPRRWAGKNAWVTEKKKEGSWKDVRAYDSSDLEQWVDQSLPGQVWFANETGSPTQSVRSLDKCWTDWANVATPPLPGSLFSSAIEDAKRKLASRLAKGPKGPIVVAADSTNEALAFVAQCFGPEGSAELEPYRYQILVFDKAGVLPKLAGGTRPIIPVVHSREVELELAPYAEQLHSIVVYPRNSVNAEPDIVLEPVSFETFDSALKGIGKNRDEIKSLANESGRSLTVLRRRLATVEAVRMPLWATQQQAPENLIAFMLVGAWHALNETDMAGLSLLAGDRAYEALEKDFQRLIQLNDSPLWSIGTYRGVVSKIDLLYAIARYVTRDDLKRYFDVARMVLGEDDPSLDLAEDQRWAASIHGKTREFSPAFRQGISETLVLLAVHGVGLFKARLGIDTEVEAALVVRDLLSDPLTTRTLEANDRDLPLYAEAAPTEFLSIIERDLKTSSPAVFGLLRPAGSGIFGSPSRTGLLWALEGLAWNPETLPRTVMILARLAQIEINDNWVNKPAHSLAAIFRSWMPQTAANNDERLALVKVLFNRFPDVAWTLCVAQFGNHHQVGDYSHKPTWRPDGYGHGEPFPTWGPILEFAGKMIELGKVCTTRLMAQADA
>NZ_CP042344.1|WP_146911817.1|2318520_2319504_-|IS5-family-transposase
MKQMSLATSGFELSPKRTRKRAFLDEMDAVIPWPDLLALIAPHAPAGKTGRPPFALETMLRIHLLQQFFGHSDPAMEEALHDVPLYREFAHLDAGITRLPDESTILRFRHLLERNELAAQILATVNAQLAARGLLLKSGTVVDATLIAAPSSTKNKDGQRDPEMHQTKKGNQWHFGMKAHIGVDADSGLVHTVTTTAANAHDITQAAALLHGEETQVFADSGYRGVDKRGEVQDQHPDTRWHIAMMPGKRKKLDKNRPLDVLLDQMETVKARIRAKVEHQFRVLKCQFGHRKVRYKGLAKNTSQLLVLFALSNLWMVRKRILQGARA
>NZ_CP042344.1|WP_146913135.1|2319587_2321276_+|hypothetical-protein
MLSDLIDRLHDLADADQDRAWALVEAWAKTASDSDKIALREKIRVSTLSRRATLRARKSSKQSRVAAAAKHIHTALEPSNLLDKHAWLFKGTWIEESAGELEDLENIDYEEREARIRKQRSDALKEIHGQYGVAGLLDTAIRSGASGIIGALVAERVLDEEELLALATQAFQKRSESESATRASEWLIQGALGVMPNDKKREAFLSSAITAIGPDNAARFLALAPFGEGTWSLVSSYGEEVETRYWKEVVPGWMRDSPAEIAKAVDMLMKARRPRAAFALAKYHPEKLPVHTLFQLLTVMAQDGDDKAGEYLLEHYHVERAFECINKTSELSLEQKAGLEFAYLEVLDRGWDRRAKSAIPNLERYVEDHPEVLVQAIVWTYKRSDRAEDPPEFRVEAEKARPMAERGYKLIQAMKRIPGSDEQGSIDAERLAKWTETVRKSCAELSRIGIADVVIGELLASAQIGKDGAWPCEAVRTVMEDLQSEDMMRGAHTGVYNSRGVHTRGPGGDQERQLAEKYRKWAQQLRMSSPYVASELLMKLTDTYEREAAREDTEARINQRLR
>NZ_CP042344.1|WP_146913136.1|2321868_2322615_-|hypothetical-protein
MAQSSQRFEPPRKPGRFTRDKLGAAKPDRAEAQAAKDELDALLLFKRDLGTYVRVYAFLGQLFDYGNTAIEKRAIFFKRLLPLLDFGREREGIDLSKVVLTHHKLKDQGQRALVLNDSGGEHKLQPMTETGGGKMQDKEKLLLSEILAKLNDLFEGDLSEGDQLSYVNTLKAKLDESEVLVQQARNNEKPQFEASPDLDAELENAIIDAFEAHQVMSRQALNSTVVRAGLKAILLGPAGLYEALKSQG

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Crispr_ID: NZ_CP042344_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042344_2

2482980-2483081

Orphan

Consensus_repeat	Method
CGCTGCTGCCCGCAGCAGCGCGGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042344_2

>merge|NZ_CP042344|2|2482980-2483081|CRISPRCasFinder
CGCTGCTGCCCGCAGCAGCGCGGCCTGTGGCGCAAGGCCGCTTGAAGTTGCTGCGCACCTTCAAGGTTTACAACCCCGCTGCTGCCCGCAGCAGCGCGGCCT

>NZ_CP042344|2|2|2482980-2483081|CRISPRCasFinder
CGCTGCTGCCCGCAGCAGCGCGGCCT	GTGGCGCAAGGCCGCTTGAAGTTGCTGCGCACCTTCAAGGTTTACAACCC
CGCTGCTGCCCGCAGCAGCGCGGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042344.1\|WP_146913249.1\|2474965_2475586_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP042344.1\|WP_146913254.1\|2479654_2481295_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP042344.1\|WP_146913260.1\|2486734_2487460_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP042344.1\|WP_146913251.1\|2476470_2477316_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP042344.1\|WP_146913263.1\|2489271_2489922_+\|sulfoxide-reductase-heme-binding-subunit-YedZ	unknown	unknown	gnl\|CDD\|235452
NZ_CP042344.1\|WP_146913250.1\|2475582_2476296_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|172475
NZ_CP042344.1\|WP_146913259.1\|2486140_2486725_+\|BioY-family-transporter	unknown	unknown	gnl\|CDD\|224187
NZ_CP042344.1\|WP_146913255.1\|2481375_2481666_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP042344.1\|WP_146914194.1\|2485212_2486082_+\|lipid-A-biosynthesis-acyltransferase	unknown	unknown	gnl\|CDD\|180770
NZ_CP042344.1\|WP_146913248.1\|2473030_2474941_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|341271
NZ_CP042344.1\|WP_146913252.1\|2477330_2478212_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP042344.1\|WP_146913258.1\|2484370_2485213_+\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|236348
NZ_CP042344.1\|WP_146914193.1\|2472359_2472962_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP042344.1\|WP_146913266.1\|2491484_2493857_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|227342
NZ_CP042344.1\|WP_146913253.1\|2478326_2479478_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP042344.1\|WP_146913261.1\|2487535_2488156_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP042344.1\|WP_146913256.1\|2481852_2482893_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|235436
NZ_CP042344.1\|WP_146913264.1\|2489963_2491259_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NZ_CP042344.1\|WP_146913265.1\|2491255_2491462_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338858
NZ_CP042344.1\|WP_146913262.1\|2488279_2489272_+\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	unknown	unknown	gnl\|CDD\|235431

Protein	Function_ID	Function_description	E-value
NZ_CP042344.1\|WP_146913249.1\|2474965_2475586_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	7.58582e-39
NZ_CP042344.1\|WP_146913254.1\|2479654_2481295_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP042344.1\|WP_146913260.1\|2486734_2487460_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.05787e-93
NZ_CP042344.1\|WP_146913251.1\|2476470_2477316_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	5.64696e-136
NZ_CP042344.1\|WP_146913263.1\|2489271_2489922_+\|sulfoxide-reductase-heme-binding-subunit-YedZ	gnl\|CDD\|235452	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ.	1.42e-64
NZ_CP042344.1\|WP_146913250.1\|2475582_2476296_-\|glutathione-S-transferase	gnl\|CDD\|172475	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional.	6.99375e-63
NZ_CP042344.1\|WP_146913259.1\|2486140_2486725_+\|BioY-family-transporter	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	4.70027e-35
NZ_CP042344.1\|WP_146913255.1\|2481375_2481666_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	7.41178e-54
NZ_CP042344.1\|WP_146914194.1\|2485212_2486082_+\|lipid-A-biosynthesis-acyltransferase	gnl\|CDD\|180770	PRK06946, PRK06946, lipid A biosynthesis lauroyl acyltransferase; Provisional.	8.22569e-90
NZ_CP042344.1\|WP_146913248.1\|2473030_2474941_+\|acetate--CoA-ligase	gnl\|CDD\|341271	cd05967, PrpE, Propionyl-CoA synthetase (PrpE). EC 6.2.1.17: propanoate:CoA ligase (AMP-forming) or propionate#CoA ligase (PrpE) catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of Salmonella enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency.	0
NZ_CP042344.1\|WP_146913252.1\|2477330_2478212_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	3.02887e-153
NZ_CP042344.1\|WP_146913258.1\|2484370_2485213_+\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|236348	PRK08905, PRK08905, lysophospholipid acyltransferase family protein.	1.11827e-104
NZ_CP042344.1\|WP_146914193.1\|2472359_2472962_+\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.40997e-51
NZ_CP042344.1\|WP_146913266.1\|2491484_2493857_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP042344.1\|WP_146913253.1\|2478326_2479478_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	4.8987e-126
NZ_CP042344.1\|WP_146913261.1\|2487535_2488156_+\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.26926e-22
NZ_CP042344.1\|WP_146913256.1\|2481852_2482893_-\|NUDIX-domain-containing-protein	gnl\|CDD\|235436	PRK05379, PRK05379, bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase.	7.03133e-136
NZ_CP042344.1\|WP_146913264.1\|2489963_2491259_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP042344.1\|WP_146913265.1\|2491255_2491462_-\|hypothetical-protein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000223572
NZ_CP042344.1\|WP_146913262.1\|2488279_2489272_+\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	0

>NZ_CP042344.1|WP_146913256.1|2481852_2482893_-|NUDIX-domain-containing-protein
MDHHRFDIAVLIGRFQPVHKGHLALLQEAARQARLVVVVLGSAFQARTPRNPFTWQERAELLRASVEPSLRERLIPCPVRDYYDEPRWADAVRRAVAQHAGPEARVALVGHFKDASSEYLRAFPGWQLLSLPRMGAIDSTQLRDAWLGAAQADLASALAPFADQAPPATLALLRRMASQAPYQHLQAEWRMLRDYRQAWAAAPYPPVFVTVDALLRCRDQVLLVQRAQAPGQGLWALPGGFLEPHDTLWQSCLRELREETGCALTEGRLAQSLRSVQVFDHPDRSQRGRTITHVHHIDLDDATPPAVQGGDDAAQARWVALHELPDMEARFFEDHFQILDKFLHLL
>NZ_CP042344.1|WP_146913255.1|2481375_2481666_-|co-chaperone-GroES
MKLRPLHDRVVVKRLENETKTASGIVIPDNAAEKPDQGEVLAVGPGRLDEDGDRIKMDVKVGDRVLFGKYSGQTVKVDGDELLVMKEDDLFAVVEK
>NZ_CP042344.1|WP_146913254.1|2479654_2481295_-|chaperonin-GroEL
MAAKDVVFGGDARARMMEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTNDIAGDGTTTATVLAQAIVREGTKYVAAGLNPMDLKRGIDKAVIALVEQLKQASKATTTSKEIAQVGSISANADESVGKIIADAMDKVGKEGVITVEDGKSLDNELEVVEGMQFDRGYLSPYFINNPEKQVAILENPFVLLYDKKISNIRDLLPTLEQVAKASRPLLIIAEDVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLSLEKATLADLGQAKRVEIAKENTTIIDGAGSADDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVAFLRAKQAIGDLKGDNAEQDAGIKLVLKAIEAPLREIVANAGGEPSVVVNKVLEGKGNYGFNAANDTYGDMLEMGILDPTKVTRAALQHAASVASLLLTTEAMVVEAPKEEAPAPGMPGGMGDMGGMGM
>NZ_CP042344.1|WP_146913253.1|2478326_2479478_-|ABC-transporter-substrate-binding-protein
MEISRKLFVAAVVAGIGSIGVSSGALAQEQVIKIGHIGPVSGPQAHFGKDDENGVRMAIEDLNAKGMEIGGKKIKFEIVAEDDGADPKQGTAASQKLCDQKVAGAVTFVNSGVAIPSSKVFHDCGIPMITGAATNPDLTKPGWDTTYRVIANDNALGAALANYTAKTLGLKQVAVVDDRTPYGQGIASVYKRDLEKLGVKVVANEFTNDKATDFMAILTSIKAKKPQAIFYGGMYGQAGPMLRQMAQLGMNDVKMFGGDGMCVPELAKVAAGAKTLENVVCADGGSSIEKMPGGIEWKKRYDEKYPGQFQVYSPYFYDGVMLLADAMKRANSWDPKVYIPFLQKSDYQGVTSHIRFEANGEMKDPTYTLSKFVDGKKTAIDVK
>NZ_CP042344.1|WP_146913252.1|2477330_2478212_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MNAPAPTPGTPYGTLPTAAPLPQRRPVSLPRMAQMREAGEKITMLTAYDATFAAVADAAGVECILVGDSLGMVCQGLASTVGVTLETMCYHMASVSRGVRRVQGTAWLIGDLPFGSYGESPQQALHSATRLMQAGAHMVKLEGGGWTAPTVRYLVERGIPVCAHLGLTPQTVHALGGYRVQGRGDEAAATLRSHALELQDAGAEMIVLEMVPAQLAASLTEELPRCHTIGIGAGKGTAGQVLVLHDMLGMNLGKMPRFVRNFMPDAGSIKGAIEAYVQAVKGGSFPDDAVHAW
>NZ_CP042344.1|WP_146913251.1|2476470_2477316_-|pantoate--beta-alanine-ligase
MQVVHTISDLRAALHGRGRPAFVPTMGNLHDGHLALVRQARPLGEVLVASIFVNRLQFLPHEDFDSYPRTLQADCSRLEAESCDIVFAPAERDLYPEPQTFTVTPDPALANILEGQFRPGFFTGVCTVVMKLLWCVFAGSGGTAVFGRKDYQQQMVIRRMVRQFALPVEIVSADICRAADGLALSSRNAYLSDEERARAVQLSRTLAWLSQAALEPGSKLGALEAQAMQRLGDGGWQPDYLVVRQRSDLQPPTAETLRAGQLVALGAARLGQTRLIDNLEF
>NZ_CP042344.1|WP_146913250.1|2475582_2476296_-|glutathione-S-transferase
MITLYTAATPNGHKVSIALEELGLPYALKVLDLSQGEQKRPEFLAINPNGRIPAIVDHDAGDFAVFESGAILIYLAEKTGRLMPADAKGRSRVLQWLMFQMGGVGPMMGQANVFYRYFPTRIPAAIERYQAESRRLFEVLDTHLAHHEWLAGHYSIADIANWAWVRTHRWSGVPIEGLPHLKRWRDAIRARPAVQRGIERPPAKIDLSRDGEAGSREFSEQARSMVMMGRTSQESQQ
>NZ_CP042344.1|WP_146913249.1|2474965_2475586_-|glutathione-S-transferase-family-protein
MKLYTATRAPNPRRVLMFMAEKGITGIDFVTIDLNAGEHKAPAYQARVPVSRVPALELDDGRTLSETRAICTYLEGLYPQNPLMGVDFDERAFIEMHDRRVEWYWLLPIANCVRHTHPGLATLEKPQFPDFGQSQGQKVRESARWLDATLSTQDWIAGERFTIADITAFCALEFARLMKFNAGEEGFAALQAWRDRVAARESARAM
>NZ_CP042344.1|WP_146913248.1|2473030_2474941_+|acetate--CoA-ligase
MDMAGSYEKTRAAALADPAGFWAEVARGIDWVKPWDKVVDDARKPFYRWFAGAELNTCYNCLDRHVERGRADQLALVYDSPLAGAQRKFTYRELRDEVARCAGVLRGMGVQKGDRVVIYMPMVAEAAIAMLACARIGAVHSVVFGGFAAPELAKRVVDARPKVMMSASCGLLPGKAVPYKPLLDEALEIAGAPDTPCLVLQRPELRCEMVAGRDVDWQDAMSRAEPADCVPVAATDPLYVIYTSGTTGKPKGVVRDNGGHAVALRWSMEAVFGAQPGDVYWAGSDVGWVVGHSYIVYGPLLQGCTTILYEGKPVGTPDAGAFWRVCAEHGVNVFFTAPTAFRAIKKEDPEGALVKRYDLSRFRTLFLAGERGDPDTIEWAQRILGVPAIDNWWQTELGWPAISNCMGIEVLPVHPGSPTKPVPGFDIRILDEEGNEKPAGEIGSLVIKLPMPPGTLYTLWNNEKGYEETYLSRYPGYYLSGDAGFVDAEGYGWVMSRIDDIINVAGHRLSTGQMEEILASHPDVAEAAVVGVADALKGQVPLGLVVLKSGVKHSDEEVCRDLVARVRSQLGAVADFKSVHVVARLPKTRSGKVLRVTIRTMADGGEVKVPATIEDDAVLPEIKAALAALGYPRAPA
>NZ_CP042344.1|WP_146914193.1|2472359_2472962_+|isochorismatase-family-protein
MLLQADESQLVLVDYQERLMPAICESQAVLANARRLGQAARRLGVPVWGTEQNPERLGPNDPQLRALSDKTLAKMHFSAVADGLAQWLAPTVTPARGNARSLPRHLRQSESQKAQRCSIVLGGCEAHVCLLQTALELIDEEWEVWVVTDACGSRTERNRDAAFDRLAGAGAELVTTEMVIFEWLRSCEHADFKELQALIK
>NZ_CP042344.1|WP_146913258.1|2484370_2485213_+|lysophospholipid-acyltransferase-family-protein
MPLIFRFLSLLPLWLLHGLGALLGWLVFALSPTYRRRFIAHARLAGYSLRAVGSAVGHAGRMVAEAPRLWLRAALPPCEVRGAECVEQAWAAGRGIVFLTPHIGCFELSVQEGARRWAPGHGPFTILYRPARQAWLARMLAQARQRPGIRAVPTNLQGVRQMIKALRRGGAVGLLPDQVPPRGMGVWAPFFGREAYTMTLAARLVQQTGAAVILARCERLRLGRGYVLHLQALEQALAPEVDAAVRQINAALEAQIRQCPQQYLWGYGRYKQPREPEVAA
>NZ_CP042344.1|WP_146914194.1|2485212_2486082_+|lipid-A-biosynthesis-acyltransferase
MTRLAIAALNLLARLPLPWLRALGTGLGRVLFVLARSRRAVALRNLQLCFPELPEPQRRAWARASFEAFCQTFLDRGWLWSGSEALLRARVKLTGAVAELDDPSPIIVFAPHFYGMDAGGLALPLRTRREFTSIYTANSNPVLDAWLTEGRQRFGASRMLNRAEGVKPIISCLRKGGLLYLLPDMDHGAAGSLFVPFFAVPDAATLPSLSRFARLGRAKVLALYTRITPQGYEARLTPAWQDFPTDDVAADTARMNRELEAAIRTMPAQYYWVHRRFKTRPPGQESVYR
>NZ_CP042344.1|WP_146913259.1|2486140_2486725_+|BioY-family-transporter
MSETLSRERSHAMVQVALFAALTAVLGLIPKLDLPFGVPITLQSLGPMLAGCFLGARRGFQAMALFELAVAAGLPLLAGGRGGLGAFAAPTSGYLVGFILAAAATGLLMGRLPRATPLQAAISAFVASAVGGVLLLHASGILGLMQFAAMPLQKALLLDLAFVPGDLLKCAVCALVVHAVAKAMPDWPLGGRRR
>NZ_CP042344.1|WP_146913260.1|2486734_2487460_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MPPSSPADTTSTAPLCIDGRAAMAWMHTARFFTTAAQLHQLPEVQVPEIAFVGRSNAGKSTAINTLAQQRQLAFASKKPGRTQHINLFALGRQGAMDAVLADLPGYGYAAVSREDKLRWQRVMLNYLVQRESLSAFVLLCDPRLGLTELDEALLDALRPRVQAGLRFLVLLTKADKLTRAQQAKALSITRLQAGGGEVRLFSALSKQGVEEVAQLLWQWTRPEANAAADAEAAPPAPPEQA
>NZ_CP042344.1|WP_146913261.1|2487535_2488156_+|c-type-cytochrome
MKLIASLLMSAALAVSSVSAIAADGPAKPDPAQGEASYTAVCAACHGADGNSMLPNTPSLAQQFPEYLAKQLHEFKSGKREDAVMQGMAATLDDDGIRNVSAWLGAQKAKDSAAKDAELAAVGERIYRGGAQDRGVAACAGCHSPNGAGIPAQYPRLAGQHQDYTIKQLAEFRDGKRANSATMHDVAKYLTDREVQALADYIAGLR
>NZ_CP042344.1|WP_146913262.1|2488279_2489272_+|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP
MLLLPQPTESTAIRPSEITPEPLYLRRRSWLRKAGRAGAGLALARWLPAAQARQMAEADLAPLKGEPSKVDAAMTMEPLTRFEDATGYNNFYEFGSGKTDPAEHAHRLRTRPWTVEVGGLAHKPQTFDIDALLRLGAMQERIYRLRCVEGWSMVIPWVGYSLSALLARVQPMGSARYVQFETLADKASMPGVRSSILQWPYVEGLRLDEAMHPLTLLAFGMYGRVLPPQNGAPLRVVVPWKYGFKSAKSIVRIRLVEQQPPTAWNVAAPQEYGFYSNVNPEVPHPRWSQASERRIGEGGLFAKRRPTLPFNGYANQVAELYAGMDLKKYY
>NZ_CP042344.1|WP_146913263.1|2489271_2489922_+|sulfoxide-reductase-heme-binding-subunit-YedZ
MAARQWQAPAGRALKPLLFVLCLLPMLYLAWGAATDGLGANPAERLIRDSGDWTLRLLCATLAVTPLRRLLAWPALARLRRMLGLFTFSYACLHLSCYAVLDMGLDVPAIVGDVLQRPFILVGMVAYALLLLLWLTSFATVIRRLGGRTWQTLHRSIYLVALLAMVHFFLMRAGKRDFAEVFAYGVLLAALLGARLPWWRRARWSAARRPGSLSQK
>NZ_CP042344.1|WP_146913264.1|2489963_2491259_-|diaminopimelate-decarboxylase
MNDAAPLPGRPHLHYRSGALHLEDARLADLAREYGTPLYVYSRAAMLDALAAYQRGFAGRRARICYAMKANSSLAVLQVFARAGCGFDIVSGGELQRVLAAGADPATVVFSGVGKTRGEMRQALQAGIACFNVESEAELEVLSAVAQALGMRAPVSIRVNPNVDAHTHPYISTGLKDNKFGVAHERVLATYRRAAQLPGLQVKGIDCHIGSQITEETPYLDAMDKVLDLVQAVEAQGIALEHIDFGGGLGIDYQGDTPPAADALWAKLLARVDQRGYGQRLLMVEPGRSLVGNAGVCLTEVLYLKPGEQKNFCIVDAAMNDLPRPMMYEAYHAIVPLDQASSAPHQTYDVVGPICESGDWLGRERSLAVRPGDWLAVLSAGAYCSAMGSTYNTRARAAEVLVDGAQVHLVRERESVSDIFRCERLLPAEKI
>NZ_CP042344.1|WP_146913265.1|2491255_2491462_-|hypothetical-protein
MPTIRQHSLSASLTLAACALLLASCGQRGPLYLPAPEAAGVPAQAPAAASAPAPQTTQDAATPARKQP
>NZ_CP042344.1|WP_146913266.1|2491484_2493857_-|PBP1A-family-penicillin-binding-protein
MPSDPEHTPPPARRPGAWRWLWRPLAWLVGLAAAGVLAAALLVAIGLAMAYPKLPDVSDLANYRPKLPLRVFSVEGALLGEFGEERRNLTPIGDIPKVMTDAVLAVEDARFFEHGGVDYKGVARAALANLGRVKSQGASTITMQVARNVYLSSEKTFTRKIYELLLTFKLEHLLSKNQILEIYMNQIYLGNRAYGFASAAETYFGKPLKSITIAEAAMLAGLPKAPSAYNPISNPKRARARQLYIIDRMLENGFISAEQAREAKAEPLKLRGPGESRTRVHAEYVAEMARQMVYAQYGADTYTRGLNVYTTLQAGEQDAAYKALRQGIMNYERRQHYRGPEAFVSLPAQAEAAEDVIDDTLLNHPDNGEVLAAVVLQVEPKKVTVARPDGQVIEVTGDGLKPVQSGLAAKAPAEIKLRRGAVVRIVQTPKQSWEITQLPEVEGAFVAMDPRSGAIRALVGGFDFEKNKFNHVTQAWRQPGSSFKPFIYSAALEKGFTPSTVVDDAPLYFSAEQTGGKPWEPKNYDGKYDGPMPLRTGLAKSKNMVSIRVLQAIGPKTAQTWATHFGFEADKHPAYLTMALGAGSVTPMQMARAYSVFANGGHLVNPYLIERITDQQGNVLNEYQPPAADTLPQAISPRNAFVMDSLLQEVARSGTAARAQATLKRPDLYGKTGTTNDAVDAWFAGFQPTLAAITWIGYDTPRNLGSRETGGGLSLPIWIDFMQYALKGVPVTQPTVPPGVTNVGGEWYYDEYARGAGVASLLDGSASGSDATPVRPTSEERNRILDLFRN

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Crispr_ID: NZ_CP042344_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042344_3

2670153-2670263

Orphan

Consensus_repeat	Method
GCAGGTGCTGGTGCGCCACCACTACCTGAGCCTGGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042344_3

>merge|NZ_CP042344|3|2670153-2670263|CRISPRCasFinder
GCAGGTGCTGGTGCGCCACCACTACCTGAGCCTGGACCAGCGCGCGCTCACGCCGGGCGGCGTCGTCCACCATGCAGGTGCTGGTGCGCCACCACTACCTGAGCCTGGACC

>NZ_CP042344|3|3|2670153-2670263|CRISPRCasFinder
GCAGGTGCTGGTGCGCCACCACTACCTGAGCCTGGACC	AGCGCGCGCTCACGCCGGGCGGCGTCGTCCACCAT
GCAGGTGCTGGTGCGCCACCACTACCTGAGCCTGGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042344.1\|WP_146913418.1\|2659967_2660756_+\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP042344.1\|WP_146913433.1\|2677797_2678085_-\|DUF2274-domain-containing-protein	unknown	unknown	gnl\|CDD\|370791
NZ_CP042344.1\|WP_146913432.1\|2677342_2677612_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP042344.1\|WP_146913420.1\|2662362_2662971_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP042344.1\|WP_146913425.1\|2669137_2669932_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|181295
NZ_CP042344.1\|WP_146913430.1\|2675360_2675834_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913416.1\|2658184_2659051_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP042344.1\|WP_146913423.1\|2667491_2668118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913426.1\|2671149_2672052_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180458
NZ_CP042344.1\|WP_146913421.1\|2663068_2664334_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP042344.1\|WP_146913417.1\|2659140_2659926_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NZ_CP042344.1\|WP_146913424.1\|2668105_2669008_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP042344.1\|WP_146913431.1\|2676385_2677165_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP042344.1\|WP_146914204.1\|2675853_2676315_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP042344.1\|WP_146913428.1\|2672963_2673800_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|223986
NZ_CP042344.1\|WP_146913422.1\|2664442_2666869_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP042344.1\|WP_146913429.1\|2673864_2675280_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP042344.1\|WP_146913434.1\|2678081_2679350_-\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|225499
NZ_CP042344.1\|WP_146913427.1\|2672082_2672967_+\|EI24-domain-containing-protein	unknown	unknown	gnl\|CDD\|377798
NZ_CP042344.1\|WP_146913419.1\|2660950_2662261_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956

Protein	Function_ID	Function_description	E-value
NZ_CP042344.1\|WP_146913418.1\|2659967_2660756_+\|serine-O-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	1.88622e-89
NZ_CP042344.1\|WP_146913433.1\|2677797_2678085_-\|DUF2274-domain-containing-protein	gnl\|CDD\|370791	pfam10038, DUF2274, Protein of unknown function (DUF2274). Members of this family of hypothetical bacterial proteins have no known function.	7.06005e-26
NZ_CP042344.1\|WP_146913432.1\|2677342_2677612_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	4.06056e-15
NZ_CP042344.1\|WP_146913420.1\|2662362_2662971_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.20962e-150
NZ_CP042344.1\|WP_146913425.1\|2669137_2669932_+\|glucose-1-dehydrogenase	gnl\|CDD\|181295	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional.	2.22906e-159
NZ_CP042344.1\|WP_146913427.1\|2672082_2672967_+\|EI24-domain-containing-protein	gnl\|CDD\|377798	pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family contains a number of eukaryotic etoposide-induced 2.4 (EI24) proteins approximately 350 residues long as well as bacterial CysZ proteins (formerly known as DUF540). In cells treated with the cytotoxic drug etoposide, EI24 is induced by p53. It has been suggested to play an important role in negative cell growth control.	1.02981e-11
NZ_CP042344.1\|WP_146913416.1\|2658184_2659051_-\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	7.99267e-121
NZ_CP042344.1\|WP_146913421.1\|2663068_2664334_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP042344.1\|WP_146913417.1\|2659140_2659926_+\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.51384e-75
NZ_CP042344.1\|WP_146913424.1\|2668105_2669008_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.06991e-99
NZ_CP042344.1\|WP_146913431.1\|2676385_2677165_-\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	2.01073e-130
NZ_CP042344.1\|WP_146914204.1\|2675853_2676315_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	4.0522e-67
NZ_CP042344.1\|WP_146913428.1\|2672963_2673800_+\|competence/damage-inducible-protein-A	gnl\|CDD\|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	4.41014e-61
NZ_CP042344.1\|WP_146913422.1\|2664442_2666869_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP042344.1\|WP_146913426.1\|2671149_2672052_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180458	PRK06194, PRK06194, hypothetical protein; Provisional.	9.63498e-171
NZ_CP042344.1\|WP_146913434.1\|2678081_2679350_-\|TrbI/VirB10-family-protein	gnl\|CDD\|225499	COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion].	4.07407e-89
NZ_CP042344.1\|WP_146913429.1\|2673864_2675280_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP042344.1\|WP_146913419.1\|2660950_2662261_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.59154e-172

>NZ_CP042344.1|WP_146913425.1|2669137_2669932_+|glucose-1-dehydrogenase
MKARSVQQLFDLSGRTALVTGGSRGLGLQMARALGEAGARIMLASRKAEELEQAAAELQAADIDARWVAADCAQEADIQRLASETLQRMGEVDILVNNAGASWGAPAEDHPLAAWDKVMNLNVRGYFLLSQALGKASMIPRGKGAIINLASIAALGGNPLAMKTIAYNTSKGAVLNFTRALAGEWGHYGIRVNAICPGFFRTKMASVLIDTVGEDKMKAGAPLGRLGDDEDLKGLTLLYASDAGKHITGQWMAVDGGVSAIIAA
>NZ_CP042344.1|WP_146913424.1|2668105_2669008_-|glutamate-racemase
MPFPPSHAPIGVFDSGIGGLSVLRALREELPQERFVYLADSAHTPYGEKGERFVRQRSLAIARRLVHEHAIKLLVVACNTATAAAVSALRENFTSLPIVGVEPALKPAALCSRTGHVGVLATHGTVQSTRFAELLARQGTLARFSVQACDGLAQAIEQATLPTAAPDEVLERTRALCARYVSALGSFGTKEGEIDTLVLGCTHYVFVQPMLQELAGPQVTLIETGAAVARQARRKLQQHGPLADGFRGGRGEQLRLLTTGSLAALQAAAARWLALPPEACSAVALVDEMAESREHVLQCR
>NZ_CP042344.1|WP_146913423.1|2667491_2668118_+|hypothetical-protein
MSDYNAPFEIHVHGQVQLRLGVDFAQLQDALKPLWKYAGARSLADGSVSAYEEEPGIQFEPKERLLQMCWTVRGDEDFRQSLDEMCMSLNEIADQGAAIEVTFYDTEFDEDEAEEAEDESESRDDFLMLFVGPTPAAIMQVQRDMLVQDVINVMERHFDAAELSGVVAEIDKLFTERFDALVSSLDLSRRPRGTGGRGGSNRRPRHLH
>NZ_CP042344.1|WP_146913422.1|2664442_2666869_+|endopeptidase-La
MPGQTPLPDAPLVFPLLPLRDVVVFPHMVIPLFVGRSKSIKALEAAMGADRQIMLVAQKAASKDEPQAEDMFEIGCVSTILQMLKLPDGTVKVLVEGQQRARLVEVSDSESHFTGAARPLLVPVVARETAEIEALRRAVMQQFDQYVKLNKKIPTEISASIAGIEDAGRLADTIAAHMPFKLEDKQHVLDLTDVKARLENLFEQLEHEVDILNVDKRIRGRVKRQMEKNQRDFYLNEQVKAIQKELGEGEEGADIEEIAKRIKAARMPREALRKAEAELKKLKLMSPMSAEATVVRNYIDVLTGLPWSKRTKVRHDLALAEEVLNADHYGLEKVKDRILEYLAVQQRVDKLKAPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGMRDEAEIRGHRRTYIGAMPGKVLQSLSKAGTRNPLFLLDEIDKLGMDFRGDPSSALLEVLDPEQNSRFADHYVELEFDLSDVMFVATSNSMNIPAALLDRMEVIRLAGYTEEEKTNIATRYLLPKQMQANGLKEGELQVQEAAIVDIVRYYTREAGVRSLERELSKICRKVVKGLLLGKLKPGVKVTPKKLADYLGVRKFDYGRAEQKNQIGQVVGLAWTEVGGDLLTIEVATMPGKGAIQRTGSLGDVMKESVEAARTVVRSRAHMLGLRDEVFEKRDLHIHVPDGATPKDGPSAGIAMAVAMVSALTGIAVRADVAMTGEITLRGEVTAIGGLKEKLLAALRGGIRTVMIPEENVKDLQEIPENVKKGLEIVPVRWIEKVLEIALERKPVPLTEEELAAAAAVVPALAPASAAGSVKH
>NZ_CP042344.1|WP_146913421.1|2663068_2664334_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MAEKKGSSSEKTLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEQPGSDNAQGGNGDLPTPADIKANLDSYVIGQEPAKRTLAVAVYNHYKRLRHKEKAGKEDVELSKSNILLVGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYDVERAQRGIVYIDEIDKITRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQVDTTNILFICGGAFAGLEKVIEDRTEASGIGFGATVRSKKQRSLSEVFQDIEPEDLIKYGLIPELVGRMPVVAALAELGEDALVRILTEPKNALVKQYGALLEMEGVELEIRPAALKAIARKAIARKTGARGLRSILEQSLIGTMFDLPNAANVEKVVVEEATIDEARAPLLVYREAAKKA
>NZ_CP042344.1|WP_146913420.1|2662362_2662971_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSAQETKALGLIPMVVEQSGRGERSYDIYSRLLKERVVFLVGEVNDQSANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTMCVGFAASMGAFLLAAGAKDKRYSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKEQMNRILAERTGQSYEKIVHDTERDYFMTADEAKDYGIVDQVIARRS
>NZ_CP042344.1|WP_146913419.1|2660950_2662261_+|trigger-factor
MAVTVETLEKLERKITLSLPVQSIKSEVDGRLKRLARTVKMDGFRPGKVPLGVVAQRYGYSVQYEVINDKVGEAFAQAANEAKLRVAGQPRISEKDGAPEGEMAFDAVFEVFPEVKLGDLSGAEVQKLSAEVDDAAIDRTLDILRKQRRTFAQRAQGTPAEDGDRVTVDFDGKIDGEPFDGGKAEAFQFLVGEGQMLKEFEDAVRGMKVGESKTFPLAFPEDYHGKDVAGKTADFLVTLKNLEAAHLPEVNEQFVKSLGIEGGTVESLRADVRKNLEREVKFRLQARNKQAVMDALLAHAELDLPNAIVQAEIERLLEGARADLKARGIKDADKADIPEDVVRPQAERRVRLGLVVAELVRANELQAKPEQLKAHVEELASSYEKPQDVVKWYYGDRDRLAEVEAVVVENNVTDFVLGKAQVTDKVVSFDELMAQN
>NZ_CP042344.1|WP_146913418.1|2659967_2660756_+|serine-O-acetyltransferase
MFPRIRSDIQCILDRDPAARNAWEVVTCYPGLHAIWLHRPAHWCWTHGLRWLGRFISHLARWATGIEIHPGAKLGERVFIDHGMGVVIGETAEIGDGCTIYHGVTLGGTTLYKGAKRHPTLGRDVVVSAGAKVLGGFVVGDGAKIGSNAVVIKPVPAGATAVGIPARIIASHKEHGADVTEAQHEEQQKFSAYGVTPQQADPLAQALRTLADSASAQERQIALLWQALQKLSAGEPAPGCVPPQAQVSGRCEAEKVKEILGK
>NZ_CP042344.1|WP_146913417.1|2659140_2659926_+|RNA-methyltransferase
MRTRFVLVQTSHPGNVGAAARAMKTMGFGDLVLVAPRWPNLLRREIAIQRASGALDVLERARVVATLEEALEGMHHLCATAMTPRDFGPPTRTPREHFDLLLNEELAALDTQGLEADSSKNSTSDFGVAFLFGSERFGMANADVYRCHVALSIPTSPHFGSLNLAAAVQVIAYEWRLALGGFAVRDATPAAALADSAQLAGMLAHWEQALTQIGFLDPGAPKKLMPRLNQLFNRAHPTREEVHILRGIARAMLDAPRPGAR
>NZ_CP042344.1|WP_146913416.1|2658184_2659051_-|inositol-monophosphatase
MSSHLHPMLNTAIKAARAAGAIINRAALDVEAVRVAQKQINDYVTEVDQASEAAIIETLLTAYPGHGILAEESGRQHGAKNSEFVWIIDPLDGTTNFIHGFPYYCVSIALSVRGKVEHGVVYDPTRNDLFTATRGRGAFMNDRRVRVSKRTRLSECLLGTGFPYRPGDDFAGYLKMMADVMQHTHGLRRPGAAALDLAYVAAGFTDGFFETGLSIWDVAAGGLLVTEAGGLVGNFTGEANYLEQRECLAAPPRIYGQMVGLIGKYSKFAGVADKMTVQAAGSAEGRAD
>NZ_CP042344.1|WP_146913426.1|2671149_2672052_+|SDR-family-NAD(P)-dependent-oxidoreductase
MIDDFAGKTAVLTGAGSGFGLECARIAARRGMRLVLVDVQQEALDRAVAELEALDVPLLARRVDVSSGTQMQALADAVQQRFGAPHLVFNNAGVGAAGLVWENSEADWQWVLGVNLWGVIHGVRLFTPLMLTAARADPLWRGHIVNTASMAGLVSMPNMGVYNTSKHAVVALTETLHQDLQLVTTQVGASVLCPYFVPTGIGRSERNRPAALQGAALTTSQRVGQAMLDKAVAHGKVSAAEVAAKVFDAVAQGHFYIYSHPQALSSVAERMQAIVQARNPPDPFASRPEVGAQLRSALRT
>NZ_CP042344.1|WP_146913427.1|2672082_2672967_+|EI24-domain-containing-protein
MSPLIDSFWRAAGYCLMPRVIALSLLPLVLIGVVTAAAGYFFWAGAVAWMQSLLDGTAWLGTVWGWLAHLGVSDVPAVLAPLLVLLLTLPVVVFVCVLAVSVLMVPAIVDLVAKRRFAQMQRRHGAGVLASIWWSASSTVVALVLLLLSVPLWLIPPLVLILPPLIWGWLTYRVMAFDALAEHASSEERKTIFARHRASLLVIGVLCGLLGAAPAVVWASGVVFVAAFFVLIPVAIWIYTLVFAFSSLWFTHYCLQALHRLRSLQPPPAPGAAVTSEPVIDVAARPLAPPPLQP
>NZ_CP042344.1|WP_146913428.1|2672963_2673800_+|competence/damage-inducible-protein-A
MSPDFGLLIVGDEILSGKRADKHLPAVVRLLGERGLALSWAQVVGDEPRRITEVLARAFAGSEVVFCCGGIGATPDDHTRQCAAQALGVPLVAHREAQALITERMQDMAHEQGVPFDAMRADNVQRLQMGVLPQGARLIPNPYNKIAGFSCIGAAGAAVHFVPGFPVMAWPMIEWVLENTCARWFHRNPQAEHSVVLHGATESALTPLMQRIEAEHPGVRVFSLPSVDHPVYGAHIELGVKGEAARVPAAWQALLAGLQAQAIALGPQIERRCPSAAP
>NZ_CP042344.1|WP_146913429.1|2673864_2675280_+|type-I-glutamate--ammonia-ligase
MAKTVADVMRMVQDSEVRFIDLRFTDTRGKEHHVTIPASHFDEDKFASGHAFDGSSMPGWKGIEASDMQLMPDPQTANIDPFFEQTTLILQCDVVEPGDGKAYDRDPRSIAKRAEAYLKASGLGDTAYFGPEPEFFMFDSVRWATEPGKVFFEIDEYEAPWNTGARMEGGNRGHRPATKGGYQPVPPVDSAQDIRAEMSSVLESLGIPVEVFHHEVGGAGQNEIGTRFSTLVQRADWTQLMKYVIWNVADSYGKTVTFMPKPYAGDNGSGMHVHQSIWKDGKNLFAGDGYAGLSDFALHYIGGLIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPYVANPRGRRVEARFPDPLMNPYLGFAALMMAGLDGVENQIHPGEAATKDLYHLPPEEDSLVPTVCASLEEALTALDADRGFLTRGGVFSDGMLDAYIELKQAEVRRLRMTPHPAEFDMYYAL
>NZ_CP042344.1|WP_146913430.1|2675360_2675834_+|hypothetical-protein
MKNPLFVLPILALALVWQPAGAQDRIYRCGNEYTNNASEAKERGCKLVEGGNVTVLQSSRPAAPAAAAPPASAPKVSAADQKARDSDRQAILQDELRKAEARLAELTKEYNNGFPQKSALEMRNAQAYQERTAELKANMDRAQADVDGIRRELERAK
>NZ_CP042344.1|WP_146914204.1|2675853_2676315_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MVCMGNICRSPTAEGVLRRMAREAGLAHRLQIDSAGTHDYHIGAAPDARACRHAGARGYDLSALRARQLVREDFERFDLVLVMDAANEAAARALCPPQWASRIARLTDFCSTQACTEVPDPYYGAGEGFERVLDLVEDACRGLLQQLRAQGST
>NZ_CP042344.1|WP_146913431.1|2676385_2677165_-|exodeoxyribonuclease-III
MQIATWNINSLTVRLPQVLAWLQVNPVDVLALQELKLGDDRFPHDAFGPAGYHSSCFGQKTYNGVALLTRAPVREVVRNIPGFEDPQARTIAATLDAPGGQLRLINGYFVNGQAPGSDKFAYKMRWLAALHQWVKEELARHPRLVLLGDFNIVPDDRDTWDPVGLAGTILHTPEERAHFQALLALGLSDSFRLFEQAPQTFSWWDYRMLGFQKNRGMRIDHILVSEALKDHARACEVDRSPRKNRQPSDHAPVVLTLDA
>NZ_CP042344.1|WP_146913432.1|2677342_2677612_-|AlpA-family-phage-regulatory-protein
MFQALHAADRPATAPTFPTPAFFRMVDVVRITALSRATVYRRIAEGRFPPPVHLGGRACGWPPSDLQRWIDDPQSYRSGETGSAAPTGG
>NZ_CP042344.1|WP_146913433.1|2677797_2678085_-|DUF2274-domain-containing-protein
MNVTKKLRLGPLPKTESVKLIFACPASLRADLDRYAALHAQAYGEAVDATTLIPHMLEAFIAGDRGFKRSGSIQTEALRDARASADAGISDRPPP
>NZ_CP042344.1|WP_146913434.1|2678081_2679350_-|TrbI/VirB10-family-protein
MNQDDSPDLAPQAGKVAPEAVALRAQPRPVTRLNRRTLAILVGGLSVAVLGATIWSLQPHQRGAGEQTELYNVDRVSKSEGLDGLPTDYSKLPPKVPELGPPLPGDLGPAIVKSQQPVTPTYAPPGHDPADALRKEADAAAASSVFFRSGAQGKAAAPGTAQIAAATPGSALAGFDPLAAGPASTAAQPSDPTAVQNRQDQKEAFLKGGSTETRNSGNLQIPSSPYQVMAGTVIAGALVTGIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGRYNSQVSYGQSRVQVVWNRIILPDTSSLKLDNLAGTDPAGYSGLEDGVDWHWDRVFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLPVRIIVNRDLVLRPYQPLFFNRGAMR

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Crispr_ID: NZ_CP042344_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042344_4

3172311-3172396

Orphan

Consensus_repeat	Method
TGGGAGAGGGCCGGGGTGAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042344_4

>merge|NZ_CP042344|4|3172311-3172396|CRISPRCasFinder
TGGGAGAGGGCCGGGGTGAGGGCCGCTCACCCACGGCATCCCTTGCTGCCCTCCCTCCCCCCCTGGGAGAGGGCCGGGGTGAGGGC

>NZ_CP042344|4|4|3172311-3172396|CRISPRCasFinder
TGGGAGAGGGCCGGGGTGAGGGC	CGCTCACCCACGGCATCCCTTGCTGCCCTCCCTCCCCCCC
TGGGAGAGGGCCGGGGTGAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042344.1\|WP_146913863.1\|3166292_3166676_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315853
NZ_CP042344.1\|WP_146914228.1\|3166678_3167308_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381606
NZ_CP042344.1\|WP_146913876.1\|3172750_3173989_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376229
NZ_CP042344.1\|WP_146913893.1\|3179013_3179958_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146914229.1\|3167799_3168069_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182903
NZ_CP042344.1\|WP_146913868.1\|3168421_3168736_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913881.1\|3175989_3176400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913878.1\|3174204_3174765_+\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
NZ_CP042344.1\|WP_146913889.1\|3178346_3178766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913859.1\|3164637_3165621_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913872.1\|3169335_3171009_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226810
NZ_CP042344.1\|WP_146913891.1\|3178783_3179017_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227315
NZ_CP042344.1\|WP_146913883.1\|3176439_3177333_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370823
NZ_CP042344.1\|WP_146913887.1\|3177797_3178334_+\|DUF1320-domain-containing-protein	unknown	unknown	gnl\|CDD\|369176
NZ_CP042344.1\|WP_146913885.1\|3177362_3177650_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375408
NZ_CP042344.1\|WP_146913870.1\|3168745_3169336_+\|DUF3486-family-protein	unknown	unknown	gnl\|CDD\|371834
NZ_CP042344.1\|WP_146913880.1\|3174813_3175965_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370822
NZ_CP042344.1\|WP_146913864.1\|3167304_3167739_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377333
NZ_CP042344.1\|WP_146913861.1\|3165634_3166189_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042344.1\|WP_146913866.1\|3168065_3168425_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042344.1\|WP_146913863.1\|3166292_3166676_+\|hypothetical-protein	gnl\|CDD\|315853	pfam13272, Holin_2-3, Putative 2/3 transmembrane domain holin. Holin_2-3 is a putative holins with 2 or 3 transmembrane segments. It consists of many proteobacterial proteins ranging in size from about 70 aas to 120 aas. They have 2 or 3 predicted TMSs. Although some are annotated as phage proteins or holins, none appears to be functionally characterized.	2.65914e-26
NZ_CP042344.1\|WP_146914228.1\|3166678_3167308_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381606	cd13403, MLTF-like, membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins. This subfamily includes membrane-bound lytic murein transglycosylase F (MltF, murein lyase F) that degrades murein glycan strands. It is responsible for catalyzing the release of 1,6-anhydromuropeptides from peptidoglycan. Lytic transglycosylase catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do goose-type lysozymes. However, in addition, it also makes a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	3.13127e-23
NZ_CP042344.1\|WP_146913876.1\|3172750_3173989_+\|hypothetical-protein	gnl\|CDD\|376229	pfam18810, PBECR2, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages. The predicted active site contains a conserved arginine and threonine residues.	1.12024e-29
NZ_CP042344.1\|WP_146914229.1\|3167799_3168069_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|182903	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein.	2.30728e-13
NZ_CP042344.1\|WP_146913883.1\|3176439_3177333_+\|hypothetical-protein	gnl\|CDD\|370823	pfam10124, Mu-like_gpT, Mu-like prophage major head subunit gpT. Members of this family of proteins comprise various caudoviral prophage proteins, including the Mu-like prophage major head subunit gpT.	8.29691e-169
NZ_CP042344.1\|WP_146913878.1\|3174204_3174765_+\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	9.66345e-25
NZ_CP042344.1\|WP_146913872.1\|3169335_3171009_+\|hypothetical-protein	gnl\|CDD\|226810	COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General function prediction only].	5.57961e-113
NZ_CP042344.1\|WP_146913891.1\|3178783_3179017_+\|hypothetical-protein	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0.00164647
NZ_CP042344.1\|WP_146913887.1\|3177797_3178334_+\|DUF1320-domain-containing-protein	gnl\|CDD\|369176	pfam07030, DUF1320, Protein of unknown function (DUF1320). This family consists of both hypothetical bacterial and phage proteins of around 145 residues in length. The function of this family is unknown.	3.83494e-17
NZ_CP042344.1\|WP_146913885.1\|3177362_3177650_+\|hypothetical-protein	gnl\|CDD\|375408	pfam17891, FluMu_N, Mu-like prophage FluMu N-terminal domain. Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain which comprises a three-stranded antiparallel beta-sheet packed against an alpha-helix.	0.000483268
NZ_CP042344.1\|WP_146913870.1\|3168745_3169336_+\|DUF3486-family-protein	gnl\|CDD\|371834	pfam11985, DUF3486, Protein of unknown function (DUF3486). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are about 190 amino acids in length.	1.28796e-30
NZ_CP042344.1\|WP_146913880.1\|3174813_3175965_+\|hypothetical-protein	gnl\|CDD\|370822	pfam10123, Mu-like_Pro, Mu-like prophage I protein. Members of this family of proteins comprise various viral Mu-like prophage I proteins.	8.73448e-124
NZ_CP042344.1\|WP_146913864.1\|3167304_3167739_+\|hypothetical-protein	gnl\|CDD\|377333	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase. This is a family of bacterial putative uroporphyrinogen-III C-methyltransferase proteins. It forms one of the members of a complex of proteins involved in the biogenesis of the inner membrane in E.coli. Uroporphorphyrin-III C-methyltransferase (HemX) is a single spanning inner membrane protein that regulates the activity of NAD(P)H:glutamyl-tRNA reductase (HemA) in the tetrapyrrole biosynthesis pathway.	0.00954041

>NZ_CP042344.1|WP_146913872.1|3169335_3171009_+|hypothetical-protein
MASIIQPLASTLRVVEWDELPPRARAIPANFDPVAEGVLMLHQRQVVAMTQSIIAIPKGRRTGITFAVMLRKTLVAAASKEAGGDNVYYIGDTKEKGLEAIGYCARFARVIARAQGEVSNIEEFLFEDQDPQTGKTRHITAYRIRFASGFQVCALSSRPANIRGLQGHVVIDEAAFHPDVQGVLDAASALLIWGGQITVISSHNGKANPFAQFCRDIEAGRYGEDAAVFTVTFDDAVANGLYERVCWMKGETPTPEGKAKWYAKIRNAYGVRKAAMREELDAIARDGNGVALPGVWIEQAMVLPPSSVLRLALDDDFVRKAPAEREAWVADWIKRYLAPALDRLDKNERHVFAHDYARHRDFSVWGALALGAGMRRQLPLSIEMHKVPYAQQRQITWYAIEHLPRRCGGAMDAGGNGETLAEETADKFGHTHVHQVKLARAWYGTWMPKLVQAFEDGMLDIPADPNYAQDLRAIEEVDGIPMVVKARRKDVKDPDLFRHGDSAVMLCLGWFATLNLGGAIEFTPVPAFPRGFDNLAGDASDQGDDDLGLLREPHATW
>NZ_CP042344.1|WP_146913870.1|3168745_3169336_+|DUF3486-family-protein
MGRKSTVSRLPAEIKSYIEAMLATGAQTLDELIADLQARYPAESHAGQLPSRSALHRYGAKLDRRLAAIRASTEAAKLIQQHAGDDKDARSEALTAMVQSELFEAILALQEADEIGEDGEKADPGERVALLSKAAKNIATLTRSSINLKEFQARIEEATRKKLLAEQQANLEKIAKSQGMGREQVDFWIKEFLGVR
>NZ_CP042344.1|WP_146913868.1|3168421_3168736_+|hypothetical-protein
MTTSIDTSRLRREALRWLVLLTLNNARPIGAFEGPVLSVAQAEYPDCTALELRRELEYLHERALIELQRQPSGRWFAKLTRHGIDLAEYTTDCEPGIARPAKYW
>NZ_CP042344.1|WP_146913866.1|3168065_3168425_+|hypothetical-protein
MTVGVDFWQLVGFGISLLGGFATIIFTAGKLIAGQFERRMQERFAALQTTREAELSGLSRLERELLTLQAELPLQYVRREDYVRGQSIVEAKLDGLATKIDNVQLRARVFSRDSDHPTP
>NZ_CP042344.1|WP_146914229.1|3167799_3168069_+|TraR/DksA-family-transcriptional-regulator
MAGHGGPAVTDDIDRAQAREAELLADALHSQHRRAGLTGKTMADSAEHCQARGCAEPIPEPRRRALPGVRLCVACQARLEKTSKGKKAQ
>NZ_CP042344.1|WP_146913864.1|3167304_3167739_+|hypothetical-protein
MSRAAIALAALVLALAAGAAGYARGHADGKAAEAARQDAATVKAMGEQLQAHADLLKRSNVASQAMRAAATRLESANQQTTREMSDALFATAPSRTDCMFPDGVMRGLGAARDRAAQAAASGIRGALPAAATAAQEHAGRPDRP
>NZ_CP042344.1|WP_146914228.1|3166678_3167308_+|transglycosylase-SLT-domain-containing-protein
MRARLLDALAVTALVALCYLATLWLAGTAQAQVPPAANAYKRTLIRAAQAEWGLGAPVAVFAAQVHQESGWRPDAVSHVGALGLAQFMPATAQWWCDSMGLPARQCQPHNPTWALRALVGYDRYLHDRTPARYTPQDRMWVALRAYNGGLAHWQAEARSTGLREPTRAQVDAACGQARRSPVHCAENLGYPRRILLVLQPRYASWGPGL
>NZ_CP042344.1|WP_146913863.1|3166292_3166676_+|hypothetical-protein
MSQFFQNKLPRLTSWWVIALLLSLLVFFIAPQQLPVSLYKLNLIALAAVAGYWIDRSVFPYARPRLDALRALDDPVDDGEAVEHEGPEGAELLVAVSNTPALYFMLGCMWRRAVIMAAAIVAVSLGA
>NZ_CP042344.1|WP_146913861.1|3165634_3166189_+|hypothetical-protein
MLDLVRPFSFLTIRHPSRLPLWINWLLPALATLVVLVVLARLGSSVNVFGSQGLLDRLLGFTQTLAGFYIAALAAVSSFNSPHLDRTMPNPAPTMYIKYNGVMQKVAATRRRFLTSMFAYLTALSFLFTLAAIATLVLAPALGKSMASSLHWPGLGMFLFAIIQMTCVTFWGLFYLGERMLTPD
>NZ_CP042344.1|WP_146913859.1|3164637_3165621_+|hypothetical-protein
MSLSLRKRTVHFYEIHLRSYTKAAIESPSCAPFADLLKCFTGLAAGSKLPQTIRKSQQLHTVLADWGYDKTSNCYQLLISKANAALSDVALRDLGTAKVRKAGKTKAEGIEISAHALVRPNADGKTAAMLLTMQAGVAAKDIEILLRRLSKEAARNRRNRALFYFDDPSGAKNSEGKPLQYQVNYGFTAFAHQGQTLADALHTGEFEGMELIAQERSRFDTGGNLQVVERSLSVQAAIPKAVTGAGLRDAVRYFKSRPDGAEYTKLRLHYKTVAGKKTSATLDINNLDAAFTLRDHIEFDTDVESQQEALSPVILAGMRPLLQSVPS
>NZ_CP042344.1|WP_146913876.1|3172750_3173989_+|hypothetical-protein
MSSAAYGSLPFAETAQFFRRKLNLPTTGWTDIYTWMHDWAFVVAGANRDAIVADFRAAVEKAILGGSTLQDFRRDFDRIVATHGWDYNGGRDWRSRVIYDTNLATSYAAGRWQQLQAAPYWQYEHQDWVQQPREQHVAWDGLLLERDDPWWQTHFPPNGWGCHCTVRGRWASDLVRLGKSGPDQAPPVQWVQRTIGQRSINGPRTVRVPEGIDPGFEYAPGSARLKSAIPPERPTPPIPGSTGGQGLPNRRPLDVLPPARNVPAADLLPAGLPPQDYARAFLEILGATLQTAAIIKDVLGERIVVGADLFKDAAGEWKADKRGRGRFMPLLAHALLAPDEIWTRVEWLYGQQRAVVRRRYIARFVVEGEAAPALVVFENGADGWSGVTAFAGPNQAPEGWRIGVRLYRRGQE
>NZ_CP042344.1|WP_146913878.1|3174204_3174765_+|phage-virion-morphogenesis-protein
MAGTHLTITVDDAQARARLARLAELGMASLMPRLGEYLTESAQRRFTTQTAPDGAPWAPLQARYARRKKYNQDKILTLRGYLRSQIHYQVTDARTVEVGSNQEYAAIHQLGGTIEQHAQSRKTRYRSVAGRVLFAKKSHTRGVTERWVTRGAYQVKIPARPFLGISAEDERKIRDILAHWLDGADG
>NZ_CP042344.1|WP_146913880.1|3174813_3175965_+|hypothetical-protein
MPSPNTHRERSAVAIAACTFAVQAAGDSAGLLRRVQFFPAGPFRSGDTRPEDVSAWRIDAASAARVIERFKARRKPLVIDYEHQTLHKEKNGQPAPAAGWPKSLEWVEGQGLFGTVEMTARAAAAIDAREYLYFSPVFTYSTVDGSVLEILMGALTNDPGIQGMQPLSLMAAATAAFLPDPLPQEPSVNPLLKALLAALGLPETTTEEAATAALAALGPLPSLKDRAAVATAACSALQLAADASAEAVTGAVASLRASQADPARFVPVEAVTALQSQIAALTARQQAADVQALIEPALADGRLLPAMETWARELGKTDVAALTAYLQTAQPVAALAGTQTGGLPPGGTAKGDAQLSSAELAVCTAMGLTPEQYKAGASATAAA
>NZ_CP042344.1|WP_146913881.1|3175989_3176400_+|hypothetical-protein
MTALTQDRNTLRRDGLQIEPPVAAGARIFTGALVAINAAGYAVPGSTSATLKGAGTALAVADNTLGGAGALRCRVDRRPARFANSAAADAITLADLGSDCYIVDDQTVAKTHASNTRSRAGKVFDVDADGVWVDFR
>NZ_CP042344.1|WP_146913883.1|3176439_3177333_+|hypothetical-protein
MQINHSNLAILNQAFSGAFRGALAQAAPMWSQAATLVPSTTAETKYAWLGQITRFREWIGERQIQNLVLHDYAIKNKTFENTVAVGREEIEDDQYGVYTPVIQQLGQDAALHPDELVFGLLNAGFSTPCYDGQYFFDTDHPVGAPGAQASVSNFQGGAGTAWFLLDTSKVIKPVLYQKRRDYAFTAKTSLTDENVFSRNEFIWGADGRGNAGLGLWQLAYASKEALTVQSYADARAAHQSLRGDNGKPLVIQSKELWVPPNLEQAALEVVQAERLAGGATNVMRGLSKVVVCSWLTA
>NZ_CP042344.1|WP_146913885.1|3177362_3177650_+|hypothetical-protein
MATQRNNSAKGAPAPATKGDGATRQVLQVVSKRDGFRRAGRAWSGTTTVALDELTQEQVEQLSTEPMLVTLLLEVPADQGAELPSAGGASAATEN
>NZ_CP042344.1|WP_146913887.1|3177797_3178334_+|DUF1320-domain-containing-protein
MSYITPAELAERPGAREIAQTASAAHQMVRDDALMDATLRGLERSAWTGEDIAAADAALARVQDAVSEAGALIDGHLVQRGYQLPLQLPEGSAGRSMLTVWARAITRYYLNKDRMTDEAKDPVARDYRDALRLLGLLAVGKFSLGEGDPAASVNASSTDVRFQSAPLVFGREQMRAFR
>NZ_CP042344.1|WP_146913889.1|3178346_3178766_+|hypothetical-protein
MDLQAILQRLRTELADLALREIEPAAGLDAAMRANRAVPAAYLIPLSERGQASGHTGEVDQIEHRLFAVVQAVDVGNAHGVVDLKTLRQRVKRALVGFVPDPSMGDPVLFVGGELVEFEGNGRLLWSDEFGYSGYFSNP
>NZ_CP042344.1|WP_146913891.1|3178783_3179017_+|hypothetical-protein
MSLRNAKPTQAQTPPAAPETANTAADVATAVVQPPAPASASPRPPDAAHGRGGLYTVKAGRRVLVQATQSPALKEQA
>NZ_CP042344.1|WP_146913893.1|3179013_3179958_+|hypothetical-protein
MSAPKFIKKMAVLVAIEATVGTIVVPVAADAIEVSDVTLTPIEGDEVDQGVIRPYFGASETTLVTLYRKIAFSVGLAGVAAVGDLPGWATLMRACAASCTNTPAPDVDAGTVFAPVTDNIESVTIYAVVDKLLYKMAGARANVKAAVDAKQIPKWQYEFTGSFLPVEDVGAMPAVSYAKFQRPLGVNALNSTLELDGFTAACSSFQFDFGNQVVKQDLMNVDTTEITGRASTGSVTFRNTSVATKNWIEMARASAKVPMLLKHGQAATNTVSISATSAQIGKPTFSDQDGIQMITVPLRFIPSDAGNDEWAIAC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042344_3	3.1\|2670191\|35\|NZ_CP042344\|CRISPRCasFinder	2670191-2670225	35	MT776811	Arthrobacter phage King2, complete genome	39753-39787	10	0.714
NZ_CP042344_3	3.1\|2670191\|35\|NZ_CP042344\|CRISPRCasFinder	2670191-2670225	35	MF324907	Arthrobacter phage Beans, complete genome	39601-39635	10	0.714
NZ_CP042344_3	3.1\|2670191\|35\|NZ_CP042344\|CRISPRCasFinder	2670191-2670225	35	NC_041931	Arthrobacter phage Jawnski, complete genome	39386-39420	11	0.686
NZ_CP042344_3	3.1\|2670191\|35\|NZ_CP042344\|CRISPRCasFinder	2670191-2670225	35	MF377442	Arthrobacter phage Franzy, complete genome	39877-39911	11	0.686
NZ_CP042344_3	3.1\|2670191\|35\|NZ_CP042344\|CRISPRCasFinder	2670191-2670225	35	NC_041930	Arthrobacter phage Brent, complete genome	39861-39895	11	0.686

1. spacer 3.1|2670191|35|NZ_CP042344|CRISPRCasFinder matches to MT776811 (Arthrobacter phage King2, complete genome) position: , mismatch: 10, identity: 0.714

agcgcgcgctcacgccgggcggcgtcgtccaccat	CRISPR spacer
atgaagcgctcacgccgggcggcgtcgacctgtgg	Protospacer
*  . ********************** **  ..

2. spacer 3.1|2670191|35|NZ_CP042344|CRISPRCasFinder matches to MF324907 (Arthrobacter phage Beans, complete genome) position: , mismatch: 10, identity: 0.714

agcgcgcgctcacgccgggcggcgtcgtccaccat	CRISPR spacer
acgaagcgctcacgccgggcggcgtcgacctatgg	Protospacer
*  . ********************** **  ..

3. spacer 3.1|2670191|35|NZ_CP042344|CRISPRCasFinder matches to NC_041931 (Arthrobacter phage Jawnski, complete genome) position: , mismatch: 11, identity: 0.686

agcgcgcgctcacgccgggcggcgtcgtccaccat	CRISPR spacer
acgaagcgctcacgccgggcggcatcgacctgtgg	Protospacer
*  . ******************.*** **  ..

4. spacer 3.1|2670191|35|NZ_CP042344|CRISPRCasFinder matches to MF377442 (Arthrobacter phage Franzy, complete genome) position: , mismatch: 11, identity: 0.686

agcgcgcgctcacgccgggcggcgtcgtccaccat	CRISPR spacer
acgaagcgctcacgccgggcggcatcgacctgtgg	Protospacer
*  . ******************.*** **  ..

5. spacer 3.1|2670191|35|NZ_CP042344|CRISPRCasFinder matches to NC_041930 (Arthrobacter phage Brent, complete genome) position: , mismatch: 11, identity: 0.686

agcgcgcgctcacgccgggcggcgtcgtccaccat	CRISPR spacer
acgaagcgctcacgccgggcggcatcgacctgtgg	Protospacer
*  . ******************.*** **  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2304003 : 2379902

Ralstonia_phage(17.65%)

integrase,protease,tRNA,transposase

attL 2294819:2294839|attR 2364903:2364923

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2294819:2294839	attL	NA	NA	NA	NA
WP_146913126.1\|2304003_2305380_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	1.1e-42	31.9
WP_146913127.1\|2305535_2306513_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_146913128.1\|2306564_2307524_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_146913129.1\|2307579_2308839_+	aspartate kinase	NA	NA	NA	NA
WP_146913130.1\|2310238_2310610_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_146913131.1\|2310606_2310924_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146913132.1\|2312029_2312251_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_146913133.1\|2312466_2313258_+	hypothetical protein	NA	NA	NA	NA
WP_146914178.1\|2313654_2314920_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.0e-40	39.0
WP_146913134.1\|2314935_2315349_+	hypothetical protein	NA	NA	NA	NA
WP_146914179.1\|2315974_2318419_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_146911817.1\|2318520_2319504_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.5e-120	68.8
WP_146913135.1\|2319587_2321276_+	hypothetical protein	NA	NA	NA	NA
WP_146913136.1\|2321868_2322615_-	hypothetical protein	NA	NA	NA	NA
WP_146913137.1\|2322613_2323853_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.1e-106	69.0
WP_146913138.1\|2323842_2326308_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_146914180.1\|2326394_2326826_-	DNA-binding protein	NA	NA	NA	NA
WP_146913139.1\|2326788_2327418_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_146913140.1\|2327482_2328898_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_146913141.1\|2328894_2331144_-	N-6 DNA methylase	A0A220A2U4	Liberibacter_phage	8.9e-39	29.3
WP_146911817.1\|2332067_2333051_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.5e-120	68.8
WP_146913142.1\|2333202_2333829_-	hypothetical protein	NA	NA	NA	NA
WP_146913143.1\|2335207_2336470_-\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	1.4e-78	44.0
WP_146913144.1\|2336697_2337036_-	sulfurtransferase	NA	NA	NA	NA
WP_146913145.1\|2337053_2337761_-	methyltransferase domain-containing protein	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-07	29.8
WP_146913146.1\|2337865_2338426_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_146913147.1\|2338451_2339048_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_146913148.1\|2339050_2339788_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.6e-05	25.8
WP_146913149.1\|2340257_2341649_-	MATE family efflux transporter	NA	NA	NA	NA
WP_146913150.1\|2341653_2343375_-	hypothetical protein	NA	NA	NA	NA
WP_146913151.1\|2343471_2343726_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_146913152.1\|2343819_2345082_-	transcription termination factor Rho	NA	NA	NA	NA
WP_146913153.1\|2345304_2345637_-	thioredoxin TrxA	A0A1J0GW78	Streptomyces_phage	3.1e-17	43.9
WP_146913154.1\|2345739_2348268_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_146913155.1\|2348260_2351611_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_146913156.1\|2351684_2352425_+	N-6 DNA methylase	NA	NA	NA	NA
WP_146913157.1\|2352415_2353786_+	TIGR03862 family flavoprotein	NA	NA	NA	NA
WP_146913158.1\|2353832_2354819_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	5.3e-28	28.8
WP_146913159.1\|2354837_2355638_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_146913160.1\|2355682_2357482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_146913161.1\|2357565_2358738_-	diguanylate cyclase	G3MA91	Bacillus_virus	5.9e-18	35.4
WP_146913162.1\|2359752_2360790_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_146913163.1\|2360872_2361196_+	hypothetical protein	NA	NA	NA	NA
WP_146913164.1\|2361192_2361702_+	PIN domain-containing protein	NA	NA	NA	NA
WP_146913165.1\|2361614_2362658_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_146913166.1\|2362654_2364271_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-16	35.1
WP_146914181.1\|2364281_2365142_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	2.1e-44	40.1
2364903:2364923	attR	NA	NA	NA	NA
WP_146913167.1\|2365248_2366301_-	AI-2E family transporter	NA	NA	NA	NA
WP_146913168.1\|2366533_2369413_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_146913169.1\|2369499_2370765_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_146913170.1\|2370831_2372259_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.6e-44	28.9
WP_146913171.1\|2372334_2373432_+	cell division protein ZapE	NA	NA	NA	NA
WP_146913172.1\|2373448_2374252_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_146913173.1\|2374261_2375059_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_146913174.1\|2375183_2375783_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_146913175.1\|2375877_2379420_+	DNA polymerase III subunit alpha	A0A291AVG1	Streptomyces_phage	7.9e-175	36.3
WP_146913176.1\|2379545_2379902_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-11	39.6

DBSCAN-SWA_2

3155116 : 3185850

Pseudomonas_phage(54.17%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146913832.1\|3155116_3155737_-	DUF3164 family protein	A0A0A1IVF8	Pseudomonas_phage	7.6e-65	62.1
WP_146913833.1\|3155756_3155993_-	hypothetical protein	NA	NA	NA	NA
WP_146913835.1\|3155989_3156595_-	hypothetical protein	A0A0M5MXL4	Ralstonia_phage	7.3e-12	31.2
WP_146913837.1\|3156591_3156786_-	hypothetical protein	NA	NA	NA	NA
WP_146913838.1\|3156854_3157064_-	hypothetical protein	NA	NA	NA	NA
WP_146913840.1\|3157066_3158359_-	AAA family ATPase	A4JWN1	Burkholderia_virus	2.0e-83	46.3
WP_146913842.1\|3158318_3160112_-\|transposase	transposase family protein	Q5ZR04	Pseudomonas_phage	9.8e-65	32.5
WP_146913844.1\|3160125_3161160_-	hypothetical protein	Q6QID9	Burkholderia_phage	3.1e-23	35.4
WP_146913845.1\|3161125_3161434_-	hypothetical protein	NA	NA	NA	NA
WP_146913847.1\|3161430_3161709_-	hypothetical protein	NA	NA	NA	NA
WP_146913849.1\|3161711_3162185_-	hypothetical protein	A0A0S4L5L2	Pseudomonas_phage	8.4e-24	40.9
WP_146913850.1\|3162293_3162599_+	hypothetical protein	NA	NA	NA	NA
WP_146913852.1\|3162620_3162881_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146913853.1\|3162949_3163255_+	hypothetical protein	NA	NA	NA	NA
WP_146913855.1\|3163402_3163765_+	helix-turn-helix domain-containing protein	Q6QID2	Burkholderia_phage	1.4e-15	50.4
WP_146913857.1\|3163780_3164608_+	hypothetical protein	NA	NA	NA	NA
WP_146913859.1\|3164637_3165621_+	hypothetical protein	NA	NA	NA	NA
WP_146913861.1\|3165634_3166189_+	hypothetical protein	A0A0R6PJ56	Moraxella_phage	3.3e-11	32.3
WP_146913863.1\|3166292_3166676_+	hypothetical protein	Q6QIC8	Burkholderia_phage	1.3e-14	43.5
WP_146914228.1\|3166678_3167308_+	transglycosylase SLT domain-containing protein	A0A0S4L2W4	Pseudomonas_phage	1.8e-34	47.8
WP_146913864.1\|3167304_3167739_+	hypothetical protein	NA	NA	NA	NA
WP_146914229.1\|3167799_3168069_+	TraR/DksA family transcriptional regulator	A5X9I2	Aeromonas_virus	2.0e-06	43.2
WP_146913866.1\|3168065_3168425_+	hypothetical protein	Q5ZQY8	Pseudomonas_phage	4.0e-18	40.6
WP_146913868.1\|3168421_3168736_+	hypothetical protein	Q5ZQY7	Pseudomonas_phage	2.1e-39	73.0
WP_146913870.1\|3168745_3169336_+	DUF3486 family protein	Q5ZQY6	Pseudomonas_phage	5.2e-55	62.6
WP_146913872.1\|3169335_3171009_+	hypothetical protein	A0A219VH72	Ochrobactrum_phage	1.7e-111	46.0
WP_146913874.1\|3171016_3172648_+	DUF935 family protein	J9SVY0	Pseudomonas_phage	3.0e-161	56.3
WP_146913876.1\|3172750_3173989_+	hypothetical protein	J9STS2	Pseudomonas_phage	2.1e-122	55.2
WP_146913878.1\|3174204_3174765_+	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	2.2e-23	41.2
WP_146913880.1\|3174813_3175965_+	hypothetical protein	J9SH47	Pseudomonas_phage	4.2e-77	49.5
WP_146913881.1\|3175989_3176400_+	hypothetical protein	J9RWG0	Pseudomonas_phage	9.5e-32	58.3
WP_146913883.1\|3176439_3177333_+	hypothetical protein	J9SVY7	Pseudomonas_phage	2.8e-92	57.7
WP_146913885.1\|3177362_3177650_+	hypothetical protein	NA	NA	NA	NA
WP_146913887.1\|3177797_3178334_+	DUF1320 domain-containing protein	J9SNI4	Pseudomonas_phage	4.4e-37	48.3
WP_146913889.1\|3178346_3178766_+	hypothetical protein	NA	NA	NA	NA
WP_146913891.1\|3178783_3179017_+	hypothetical protein	NA	NA	NA	NA
WP_146913893.1\|3179013_3179958_+	hypothetical protein	G8CLB2	Synechococcus_phage	6.8e-33	32.5
WP_146913895.1\|3180050_3180542_+	hypothetical protein	NA	NA	NA	NA
WP_146914230.1\|3180607_3180907_+	hypothetical protein	NA	NA	NA	NA
WP_146913897.1\|3180921_3185850_+	hypothetical protein	A0A2H4J107	uncultured_Caudovirales_phage	2.3e-31	28.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042344

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection