CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042345	Novosphingobium ginsenosidimutans strain FW-6 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,DinG	0	1	1	0

1. NZ_CP042345

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042345_1

• CRISPR_ID: NZ_CP042345_1
• CRISPR_location: 1449460-1449617
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP042345_1

Consensus_repeat	Method
GCCGCCACCGACGCCGCTGCGAC	CRISPRCasFinder

spacers of NZ_CP042345_1

>1.1|1449483|25|NZ_CP042345|CRISPRCasFinder
CGACGCCGCTGCGACCGCTTCGGAA
>1.2|1449531|16|NZ_CP042345|CRISPRCasFinder
CGCCACCGACGCTGCT
>1.3|1449570|25|NZ_CP042345|CRISPRCasFinder
GACTGCTTCGGACGCTGCTACCGCC

CRISPR arrays and Neighbor proteins around NZ_CP042345_1

CRISPR arrays

The CRISPR arrays of NZ_CP042345_1

>merge|NZ_CP042345|1|1449460-1449617|CRISPRCasFinder
GACGACGCCGCTGCCGCCGCCACCGACGCCGCTGCGACCGCTTCGGAAGCCGCCACCGACGCTGCTGCCACCGCCACCGACGCTGCTGCTGCCGCCACCGACGCTGCTGCGACTGCTTCGGACGCTGCTACCGCCGCTGCTTCGGACGCTGCTGCTGC

>NZ_CP042345|1|1|1449460-1449617|CRISPRCasFinder
GACGACGCCGCTGCCGCCGCCAC	CGACGCCGCTGCGACCGCTTCGGAA
GCCGCCACCGACGCTGCTGCCAC	CGCCACCGACGCTGCT
GCTGCCGCCACCGACGCTGCTGC	GACTGCTTCGGACGCTGCTACCGCC
GCTGCTTCGGACGCTGCTGCTGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042345.1|WP_147091571.1|1455370_1456108_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|227135
NZ_CP042345.1|WP_147089990.1|1458761_1460405_-|chaperonin-GroEL	unknown	unknown	gnl|CDD|234573
NZ_CP042345.1|WP_147089979.1|1438578_1439175_+|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl|CDD|225039
NZ_CP042345.1|WP_147089978.1|1437394_1438579_+|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl|CDD|180843
NZ_CP042345.1|WP_147089976.1|1435619_1436714_+|acyltransferase-family-protein	unknown	unknown	gnl|CDD|224748
NZ_CP042345.1|WP_147089988.1|1456193_1457213_-|class-A-beta-lactamase	unknown	unknown	gnl|CDD|379138
NZ_CP042345.1|WP_147089980.1|1439860_1441105_-|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl|CDD|226926
NZ_CP042345.1|WP_147089989.1|1457429_1458242_-|peptidase-M12	unknown	unknown	gnl|CDD|239819
NZ_CP042345.1|WP_147089985.1|1449772_1451107_+|phosphotransferase	unknown	unknown	gnl|CDD|270703
NZ_CP042345.1|WP_147089991.1|1460456_1460744_-|co-chaperone-GroES	unknown	unknown	gnl|CDD|178988
NZ_CP042345.1|WP_147089977.1|1436830_1437280_+|MaoC-family-dehydratase	unknown	unknown	gnl|CDD|239534
NZ_CP042345.1|WP_147089983.1|1446259_1449109_-|DNA-polymerase-I	unknown	unknown	gnl|CDD|235591
NZ_CP042345.1|WP_147089982.1|1445383_1446193_+|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl|CDD|234712
NZ_CP042345.1|WP_147091569.1|1439261_1439864_+|DUF4126-family-protein	unknown	unknown	gnl|CDD|379253
NZ_CP042345.1|WP_147089987.1|1452561_1455312_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|238657
NZ_CP042345.1|WP_147091572.1|1460881_1462261_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240536
NZ_CP042345.1|WP_147091573.1|1462506_1462926_+|c-type-cytochrome	unknown	unknown	gnl|CDD|226005
NZ_CP042345.1|WP_147089981.1|1441285_1443097_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|131259
NZ_CP042345.1|WP_147089986.1|1451122_1452409_+|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|173838
NZ_CP042345.1|WP_147091570.1|1443191_1445321_+|M13-family-metallopeptidase	unknown	unknown	gnl|CDD|341056

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP042345.1|WP_147091571.1|1455370_1456108_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|227135	COG4798, COG4798, Predicted methyltransferase [General function prediction only].	3.40093e-71
NZ_CP042345.1|WP_147089990.1|1458761_1460405_-|chaperonin-GroEL	gnl|CDD|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP042345.1|WP_147089979.1|1438578_1439175_+|carboxymuconolactone-decarboxylase-family-protein	gnl|CDD|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	8.49682e-13
NZ_CP042345.1|WP_147089978.1|1437394_1438579_+|acetyl-CoA-C-acyltransferase	gnl|CDD|180843	PRK07108, PRK07108, acetyl-CoA C-acyltransferase.	0
NZ_CP042345.1|WP_147089976.1|1435619_1436714_+|acyltransferase-family-protein	gnl|CDD|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.88893e-37
NZ_CP042345.1|WP_147089988.1|1456193_1457213_-|class-A-beta-lactamase	gnl|CDD|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.57338e-39
NZ_CP042345.1|WP_147089980.1|1439860_1441105_-|polyhydroxyalkanoate-depolymerase	gnl|CDD|226926	COG4553, DepA, Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism].	0
NZ_CP042345.1|WP_147089989.1|1457429_1458242_-|peptidase-M12	gnl|CDD|239819	cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.	4.11725e-67
NZ_CP042345.1|WP_147089985.1|1449772_1451107_+|phosphotransferase	gnl|CDD|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.75815e-46
NZ_CP042345.1|WP_147089991.1|1460456_1460744_-|co-chaperone-GroES	gnl|CDD|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.75487e-55
NZ_CP042345.1|WP_147089977.1|1436830_1437280_+|MaoC-family-dehydratase	gnl|CDD|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	2.11515e-86
NZ_CP042345.1|WP_147089983.1|1446259_1449109_-|DNA-polymerase-I	gnl|CDD|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP042345.1|WP_147089982.1|1445383_1446193_+|undecaprenyl-diphosphate-phosphatase	gnl|CDD|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.66373e-98
NZ_CP042345.1|WP_147091569.1|1439261_1439864_+|DUF4126-family-protein	gnl|CDD|379253	pfam13548, DUF4126, Domain of unknown function (DUF4126).	9.47192e-38
NZ_CP042345.1|WP_147089987.1|1452561_1455312_+|TonB-dependent-receptor	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.79638e-32
NZ_CP042345.1|WP_147091572.1|1460881_1462261_-|MATE-family-efflux-transporter	gnl|CDD|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	1.714e-128
NZ_CP042345.1|WP_147091573.1|1462506_1462926_+|c-type-cytochrome	gnl|CDD|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	6.53995e-32
NZ_CP042345.1|WP_147089981.1|1441285_1443097_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NZ_CP042345.1|WP_147089986.1|1451122_1452409_+|acyl-CoA-dehydrogenase-family-protein	gnl|CDD|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	5.53175e-95
NZ_CP042345.1|WP_147091570.1|1443191_1445321_+|M13-family-metallopeptidase	gnl|CDD|341056	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I. The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.	0

Protein sequences

>NZ_CP042345.1|WP_147089983.1|1446259_1449109_-|DNA-polymerase-I
MEPKQHLYLVDGSAYIFRAYHRLPPLTNPQGVPVGAVYGYTTMLWKLADDLHKADGPTHLAVILDASGKSFRNDIYDQYKANRPPPPEDLKPQFPLIRDATRAFSLPCIEEQGLEADDLIASYARAATERGWDVTIVSSDKDLMQLVGKCKHGEDGEACIDMLDTMKNQRIDVPEVIEKFGVPPELVGDVLALMGDSVDNVPGIRGIGPKTATKLIQEHGSLEAALAAAPDMKPSKLRDSLIEQAEMARLSRVLVQLKEDCPLPVALDDFKLDTIPPDPLAAFLEEHGFNSLLKRLGDGRGSPERRVDLNPAKPVTAGAAPTAGSSRQPLPELPPIDRSKYVCVQDEPTLAAWIERAMAARLVAFDTETSSIDAMRAELAGISLALGPGDACYIPLGHGGTDMFAERPAQVEKTRALALLRPLLESEAVLKIGQNAKYDLNILARHGIDVGPVDDTMVMSFDLDAGRSMDGIGGGHGMDELAARHLGHTTLTFKDICGSGKKTIPFGEVPLDRATEYAAEDAEVTWRLHRLLKPRLSEEGATRVYERVDRPLVPVVAQMERHGIRVDRDKLAGLSATFAEEIAKLEGQIHELAGQPFTIGSPKQLGEILFDKLGFKGGKKGKTGQYSTDQGILERLSGEGAAIADRVLEWRQLSKLRSTYTEALQAAINPETGRVHTSYSLVGAQTGRLSSTEPNLQNIPIRTELGRQIREAFVAEPGNVLLAADYSQIELRLAAHMADVPALKEAFAEGEDIHARTAMEMFGEVNRDTRGRAKTINFAILYGISRWGLGGRLGVPADEAQAMIDRYFERFPGIRHYIHSTLESVRANGYSETLFGRKCWFPRISSNNPNERAGSERAAINAPIQGTSADIIKRAMVRMMPALEAAGLSHVRMLLQVHDELVFELPEADVPAASKVIEAVMAGAAEPAVPLSVPLGVEIGTGLSWGAAH
>NZ_CP042345.1|WP_147089982.1|1445383_1446193_+|undecaprenyl-diphosphate-phosphatase
MDTIITAILLGIVEGLTEFIPVSSTGHLILASEIFGYDAEVWKVFNVVIQLGAILAVVVLYWQTFWAVGMGLLKWRPESVAFLRNILLGFLPSAVLGFALKDYIDIMLGSPMVVAWALVIGGIAILAIEKVAKPGPASGVSQLPAKQALGVGFIQCLSMIPGVSRSGATIMGALAMGIERRTAAEFSFFLAIPTMMGATTLELWDARASLAGGMGPVGWTEIAVGFAVSFVVALAVIKAFVAFVSRAGFAPFAWYRIVAGILAIWLLSR
>NZ_CP042345.1|WP_147091570.1|1443191_1445321_+|M13-family-metallopeptidase
MLAASSLAISLAAPAQAQEAKPAAPAAAPTSVEQQESMKDWGFGVQTKYVDKSVKPGDDFNQHVNGLWLNQAEIPADRSSTGGFVQLRDLSEERMKSILEEAAAGTNPEGSPRARIAAVWRAFMDTDAIERAGLVPLYPTLEKIYAARSLEDLVGLFATPGMASPIGMGVRPDAKSSSVNALYAGQAQLGLPDRDYYLVDSPKNREIVAKYKAYLTLILGEVGYPDPAKAAEAVFQLETKMARANWDRALGRNRDLTYNKMPIADFLAFAPEVPLRAALDKQGLGNVTEIIVAQVPPTKEEIAAAKLTPDQAAKLSGGVPALAKLIASEPIANWQAWLVARYVTSKAAVLPKRIDDAQFAFYGTTLSGQPQQRARWKRAISAVEGSVGELAGEVYAERYFPAANKAAMEKLVSNLRVAMAANLKELKWMGPATRTQAQAKLDAFRPKIGYPNKYKTYDGLVLRADNAFANAQAVDAWQQADNLSRLGKPVDKDEWFMFPQTVNAYYNPSGNEIVFPAAILQPPFFALTNDDAVNYGAIGGVIGHEMGHGFDDQGSKSDGDGNLRDWWTPEDKANFEKLTGALVDQYNALCPLDEGKTCINGRLTLGENIGDLGGLSLAYRAYKLSLGGKEAPVIDGYTGDQRFFMAWAQAFRVKMREAALRQQLQTDPHSPGQYRVNGIVRNFDEWYKAFGVQPDDKLYIAPEKRLRIW
>NZ_CP042345.1|WP_147089981.1|1441285_1443097_+|ATP-binding-cassette-domain-containing-protein
MASQSDQSATPPEPKPARSLGPLRMIWQAALAYPGKLALAALALMITAGATLAIPSGFKLIIDKGFASGGNPDDIGRWFEYLLMIVVVLAIGTALRFYFVSWLGERVVADIRLKVQANLLRMSPGFFEENSPNEISSRMTSDTALIEQVVGTTVSVALRNLIMGVGGVAYLFTLAPKLTLALVIAIPLIVLPIVWFGRRLRNVSRSSQDRVADVGAMVAEVLGAMKIVQAFNQESREEARFAGAVESTFTTAKRRILLRAAMTAIIITLVFGAITMLMWQGAIGVAEGTISGGTIAAFVLTGGLVAGAFGALTEVYGDLLRGAGAASRLNELLNEKPTIAMPARPLELPSPVRGKLAFENVTFRYPTRPEVSALADFSLTVEPGETVAIVGPSGAGKSTLFQLAERFYDPQVGAVKLDGVPLTAVDPAAIRRNMALVPQEGILFAATARDNLRYGNWGASDAEIWQAAENANAADFLRELPEGLDTYLGERGARLSGGQRQRMAIARALLRDAPILLLDEATSALDAESERLVQQALERLMATRTTLVIAHRLATVRGADRIVVMDGGRIVETGKHDALSRAGGLYARLAALQFDEVPSEPVK
>NZ_CP042345.1|WP_147089980.1|1439860_1441105_-|polyhydroxyalkanoate-depolymerase
MLYTAYEMQRSWLNAASTWASVGAELLSNPALPFGYTGMGPVVASALEVFAHASAPYGKPAFDIETVTVDGATHPVTEAIVMHRPFGNLLRFSHPGLPEDAPRLLIVAPMSGHFATLLRGTVARMIERCEVYITDWADAKMVPLEAGRFDLDDYIDYVVSYLEHIGPGAHMLAVCQPSVPALAATALMNAQKHPARPLSLTMMGGPVDTREAPTSVNDLAMQRPIEWFRHTVIATVPLQYPGAGRRVYPGFLQLAGFMSMNLGNHMLSHYHMFKHLVAGADEDAEATKAFYDEYRSVCDMDADYYLQTVQEVFQRQSLAKGEFMHRGTRIELGAIRDTALLAVEGERDDISGIGQTKAALKLATNLAESRKKYLLAPEVGHYGIFNGSKWREQIAPVLEDWIKRHDKARLKVAA
>NZ_CP042345.1|WP_147091569.1|1439261_1439864_+|DUF4126-family-protein
MGIVEILGIAGSVSLLSGWRLYLCVLATGLAMQFGVLPLPAHLHSLQILANPWVMGAAGAAALLEFFADKVAWLDTVWDTIHTLIRPLGGALLALAVIDPADPATQAIAFLLGGGATLLAHGGKASARAVVNTSPEPFSNVAVSTTEDLVTGGLLYLAYANPALAGLVALGLLILTVWLLLLARRLLRRIFAPAPVPPPA
>NZ_CP042345.1|WP_147089979.1|1438578_1439175_+|carboxymuconolactone-decarboxylase-family-protein
MRLSAPRVEPVDLNQIDDEQREALAVFTGVARDVTKSEGTVLNIFRTLVHAPKAMTAFLAWGGYILSRRNSLAERERELVILRTGFNCGSGYEFTQHTRIGLDAGLSAAEIEAIKAGPDDPSWSEADRALLRATDDLTGDFHVSDESWAALSFLSQKQKMDLVMTVGQYTQVSMMLNSFGVQLDPGQELDPALDHRAR
>NZ_CP042345.1|WP_147089978.1|1437394_1438579_+|acetyl-CoA-C-acyltransferase
MSRDAVIVSTARTPLTKAARGAFNNTTGATLGAWSIKAAVERAGLDGGEIDDVLMGTAVQQGSTGGNVARLAALRAGLPVSVPAMTIDRQCSSGLMTIATAAKQILVDNMDICVAGGVESISKVVGSGKMFVEPDRELLEMHPHIYMPMIGTAEVVAKRYNISREYQDEYSLQSQQRTAAAQAAGKFDDEIVACTATMAVVNKETKEVSYQEVTANKDDCNRPDTTLEGLASLKPVMGDGGVITAGNASQLSDGSSACVVMEAKVAEKRGLTPLGRYVGMAVAGTEPDEMGIGPVFAIPKLLERFNLKMDDIGLWELNEAFAVQVLYCRDKLGIPDELLNVNGGSISIGHPFGMTGARCTGHALIEGKRRGAKYAVVTMCIGGGQGAAGLFEVF
>NZ_CP042345.1|WP_147089977.1|1436830_1437280_+|MaoC-family-dehydratase
MTPQELAAKTGEVIGVSDWFEVTQERINMFADATGDHQFIHIDEEKAKHTPFGGTIAHGFLTLSLLPVLGAMTSGARVDGIKMGVNYGGNKTRFISPVRAGKRVRAHTKLLELVEKRPGQWQQTNEITIEIEGEDKPALICEWITLFFV
>NZ_CP042345.1|WP_147089976.1|1435619_1436714_+|acyltransferase-family-protein
MSGSPRHLDALTGIRGLAAWLVVVYHTRKALTEIWHPDAIGFFAKGYLAVDLFFMLSGFVIFYNYADRLHGGDRVEIRQFLWRRFARVWPLHGFMLAAYLAFVGVLFFTGRDTSHYSLFDLPLNLILAQNWGFTNHLSWNHPAWSISTEFAAYLLFPLVAKAVRWERLQVPALFGLAAALVAGLHLTFLLSGYSELGKNIPQMGIWRCLFGFALGVVLCLLWQRLRHQRGIALAAGGTCAVLVGAGLGLSLPETLFVPAAFFAGLLALATGKGMIVQFLSSRPLLYLGEISYSTYLGHFLLWQVWKIAFVDETIQVSWLSFGGYLAAVFAASILLYRWVEKPAQRWLNARPPRWAMRPAAVPAE
>NZ_CP042345.1|WP_147089985.1|1449772_1451107_+|phosphotransferase
MTGLDELTQGLAAALARIGLPAPEGLERLSGGANMESWRFQAGDAVCVLRRAPSLEMMAGRPMDHAGEVQVVRAARAAGVMAPEVLVELEPADGIGSGYVMRAISGSPDPNAFLAEADPALAIRDIARELVAVHRTETAGLPAPVMDTAEALGELRRRFLEYGGDRPILALALKWLEANLPPPVTPRLVHGDFRLGNLMFDHGRLTGVLDWELAHLGDWHEDLAFGCMTVWRFSRPDRPGYGLTTIEDLARAYEAAGGDTFDPARFRFWTIYRTFWWALGCLQMGGFWRAGHDRSVERVVVARRTAEQELDLLLLLEDLAPEAERNRPLPPVTEPLQPGTGEPSGAEILTAISEWLTSDIKPLVSGRGKFDLAVARNALGIVAREIEQRPVATDAALAAQIMAGEADLATPGLLAQLRRMALNKLSADMPKYPALAAARAKWDT
>NZ_CP042345.1|WP_147089986.1|1451122_1452409_+|acyl-CoA-dehydrogenase-family-protein
MDFALPADLLAYLDELDAFIAAEIKPLEQQDDNIRFFDHRREYARTDFENQGLPRHEWEKLLVEATRRADAAGHWRFSAPKKYGGKDGSNLWMAVIRDRFAAKGLGLHNDLQNEHSIVGNFPFVAMFEHFGTEEQQQEFILGGFARERRVAFGLTEPDHGSDATHMETRAVRETRDGVPGWRIDGRKMWITGMHVATHCAAFCRTSGKDGDAKGITCLLVPAGTPGMVVDEYMWTFNMPTDHPRMHFENCWVPESAVLGPVDGGLSIAQSFVHQNRIRQAASSLGAATYCVEESVKYARHRKPFGQDLARNQGIQFPLVELATQCEMLRTLIYKTAWEMDQLEHKEIEHKLSDKISMCNYYANRLVCEAADRAMQVHGGIGYSRHKPFEHIFRHHRRYRITEGAEEIQMRKVAAYLFGYLGPRKALYT
>NZ_CP042345.1|WP_147089987.1|1452561_1455312_+|TonB-dependent-receptor
MRSTFRLSLLASLSVLPLAAPALAQDDAADGAEEQVIIVTGTRSTARTVEDSPVPVDVLSGDALTEGGQVETNKILNKLVPSFNFPQPAIADGSDALRPATLRGLGPDQTLVLINGKRRHVSALLNINGTVGRGSAAVDMNTIPALAIDRIEVLRDGASSQYGSDAIAGVINVRLKKASEGGRASISYGKYDTTISGVANVTGLALTGGAPSLDPTDNRYFAATTDGERKAKDGESYSIATNVGLPFFGVEGGYINVTAEYRHRGYTNRQGFDLRPNYIRPTATTWDPREITFNRLQFRFGDPKADDFILFANLGLPVGDSLELYGFASYNQRDSLSAANYRQANAAANRDWSAIAPNVSPSNANFVALTPDGFLPFIQSDLTDRAVTLGLRTTSGEWNADLSLTAGQNNFDYRVEGSLNTSFGPSSQRSFDAGGLSYRHVIANLDVSREFDMGFAGPLTLAFGGEYRSERFKIRPGDTQSFATGPLFQASFTGTAVSCAAASGVFNATTNVCSFPGRAAPAGAQGFPGIPTSSRTDAKRHNVAGYVELDAELVDGLTATAAGRYEHYSDFGSTLTGKFAARYEFTPGFALRGSISNGFRAPSLHQQYFTTTSTNFIAGLPVDISTVAVSSPVARALGSKDLKPEKSFNLSGGFTANPVSGLTLTVDYYNIRINDRIVLTENLGAAGSGTSAVNAAVKAVLDANGFNSVGAARFFVNGLNTRTQGVDAVLNWRLPLEGVGKWNLTAAYNYNTQKILARKNDLGPLATIPGLILFGRVEGIRFTEGQPRDKVVLSLDGDVGMFGLTARTTRYGKVTSPGSASPTSGDPLTAYGPDDIFLGAKWITDLELRVQPMERLSLAIGADNLFDVYPDRSPFGPRPAAIGGVYPANQQYIPFSIFSPFGFNGRYLYARASIEF
>NZ_CP042345.1|WP_147091571.1|1455370_1456108_-|class-I-SAM-dependent-methyltransferase
MVLSLTLAACAPAAPPRVLTAADYAAALADPVRPAADRARDEARKPGELLAFAEISPGEAVGDFVMGGGYFTRVLSAAVGPNGRVEAFQPAEFIAFRAAYGEEQRNTVGALPNAVAITGPFAAPAFTRPLDTIVTIQNFHDLYLKPFPAGTGAKASAALFAALKPGGVLVVVDHSAVAGSGTRDADTLHRIDKAAVIEALTAAGFKLEAEAPLYARPEDPRSANVFDPAIRGKTDQFALRFRKPG
>NZ_CP042345.1|WP_147089988.1|1456193_1457213_-|class-A-beta-lactamase
MAGLAMISAIALPASAARAESFQAEFDKVFGKELRAPREVQPTVRPFVAPVRPVTTYGGTLEATVASLADAAQGRIGVAAMDLGTGRTVAVLGDQPFPMASTSKIAIAATFLDLVDQGKRSLSDRFPLMIPQRSARFSSAVAPVRPGTMISAQGLIELSITRSDNPATDALLAAVGGPAAVNRWMRKAGLSGMRLDRDIATLVRDDGEFNPATTVDLRDSATPLAMVQLLAGLHQGRWLSASSRSVLLGAMERCVTGKRRLRAMLPEDARIAHKTGTLNNTSSDVGIIQTPDGRSIAIAVYVTGQGGKPNRDYRIASISRAIYDGYLTESSSLRRTASR
>NZ_CP042345.1|WP_147089989.1|1457429_1458242_-|peptidase-M12
MARLREHGEIIACTPKCLGNDRLHDAARAAEQENLLNRPSHHQLAQVLPVGASMTDFVAVMTTKYWRASGVRLGVGFMDNPPKELRARILSHMNSWSQSANVQFAESTSDPVVRISRDQSGYWSYIGTDALLIDKTKPTMNLQGFTMETPDSELCRVVRHQTGHALGCPHEHLRAETIALIDEQKAIEFFGATQGWTEAQVRAQVLTPLPTNSVRANTSPKRQSIMSYQIPASITKNGVAIAGGIDIDPLDYEFMAKLYPMPRMLAAAPG
>NZ_CP042345.1|WP_147089990.1|1458761_1460405_-|chaperonin-GroEL
MAAKDVKFGRDARERILAGVDILANAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELKDKFENMGAQMLREVASKTNDQAGDGTTTATVLAQAIVREGMTAVAAGMNPMDLKRGIDLAVTAVVADLVKRSKPVSGSSEIAQVGIISANGDSEVGNKIAEAMEKVGKEGVITVEEAKGLEFELDVVEGMQFDRGYLSPYFITNPEKMTVELDNPYILIHEKKLSSLQSMLPILEAVVQSGRPLLIIAEDIEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTKGEMISEDLGIKLETVTLGMLGQAKKVTIDKDNTTIVDGAGPADEIKARVEQIRAQIETTSSDYDKEKLQERLAKLAGGVAVIKVGGASEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGMKGANDDQTKGIDIVRRAITAPVKQIATNAGHDGAVVSGNLLRENDETQGFNAATDTYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEAAISEKPEDKPAMPPMGGGMGGMGGMDF
>NZ_CP042345.1|WP_147089991.1|1460456_1460744_-|co-chaperone-GroES
MAFRPLHDRVLVRRVEAEEKTAGGIIIPDSAKEKPAEGEVVAVGAGSKAEDGKVTPLDVKAGDRVLFGKWSGTEVKLDGEDLLIMKESDILGIIG
>NZ_CP042345.1|WP_147091572.1|1460881_1462261_-|MATE-family-efflux-transporter
MEQDRILTPWRAELGATLRLAAPLAAANLLQMLVYAIDVIFVARLGEEALAAASLATTLFGLMMWCFSGLTGACAPLIAAELGRRRHAVREVRRTVRMALWLAVLCGLAGMAVCLWGEELLLLSGQDPEVSRLAGEFLAILLWAMIPNVMATVLRNFVSALGRPFFATAITGLAIVVNAFGNYVFVFGHFGAPAMGLDGSAISSVITAFAMLGAYVLAIRSDRRLRRYHLLGRWWRAEWQRFGDVARIGTPIALIILAEGGLFSSAAFLMGRIGQAELAGHTVALQVAALAFQIPFGIGQAATIRVGYHFGAGDRVAIGGAGKAALILAVSYMIVPAAIMILAPLSVLQIYVDPADPANAAMVGHAVGFLAIAAAFQLFDGLQAVLAGALRGLQDTRMPMQLALFGYWLVGFATSVVLGFFTPLAGTGVWLGLAVGLVVVSILLGWRWARREALGLLPV
>NZ_CP042345.1|WP_147091573.1|1462506_1462926_+|c-type-cytochrome
MALAGCGGAKQDEAATAPSANSEPTAGSASPAAAATRTAIAAAAKPAAFAQCASCHSAEPGKHGIGPSLHGVYGTKAGEIPGYAFSDKLKASGLTWDDATLDHWLAGPIKMVPGTKMSYAGMSDPAKRAEIIAYLKTLK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	636375-636399	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443392	Rhodococcus hoagii strain PAM1340 plasmid pVAPA1340, complete sequence	49129-49153	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443389	Rhodococcus hoagii strain PAM1357 plasmid pVAPA1357, complete sequence	70055-70079	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443403	Rhodococcus hoagii strain PAM2288 plasmid pVAPA2288, complete sequence	69991-70015	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443388	Rhodococcus hoagii strain PAM1216 plasmid pVAPA1216, complete sequence	43248-43272	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443393	Rhodococcus hoagii strain PAM1637 plasmid pVAPA1637, complete sequence	70062-70086	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443402	Rhodococcus hoagii strain PAM2285 plasmid pVAPA2285, complete sequence	49104-49128	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443390	Rhodococcus hoagii strain PAM1422 plasmid pVAPA1422, complete sequence	42620-42644	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443395	Rhodococcus hoagii strain PAM2282 plasmid pVAPA2282, complete sequence	70045-70069	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443404	Rhodococcus hoagii strain PAM2287 plasmid pVAPA2287, complete sequence	68162-68186	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443405	Rhodococcus hoagii strain PAM2279 plasmid pVAPA2279, complete sequence	70060-70084	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443391	Rhodococcus hoagii strain PAM1600 plasmid pVAPA1600, complete sequence	42620-42644	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443394	Rhodococcus hoagii strain PAM1643 plasmid pVAPA1643, complete sequence	49104-49128	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443396	Rhodococcus hoagii strain PAM1271 plasmid pVAPA1271, complete sequence	42622-42646	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443406	Rhodococcus hoagii strain PAM1413 plasmid pVAPB1413, complete sequence	42914-42938	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443397	Rhodococcus hoagii strain PAM1475 plasmid pVAPB1475, complete sequence	42935-42959	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_KX443407	Rhodococcus hoagii strain PAM1533 plasmid PVAPB1533, complete sequence	42914-42938	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_CP027795	Rhodococcus hoagii strain DSSKP-R-001 plasmid plas2, complete sequence	5725-5749	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NC_005916	Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence	29891-29915	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_CP041646	Rhodococcus hoagii strain WY plasmid pWY, complete sequence	48046-48070	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NC_014247	Rhodococcus equi plasmid pVAPAMBE116, complete sequence	43227-43251	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NC_002576	Rhodococcus equi 103 plasmid p103, complete sequence	67008-67032	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NC_011150	Rhodococcus equi plasmid pVAPB1593, complete sequence	43003-43027	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NC_011151	Rhodococcus equi plasmid pVAPA1037, complete sequence	42621-42645	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	322556-322580	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NC_004854	Rhodococcus equi ATCC33701 plasmid pREAT701, complete sequence	67008-67032	4	0.84
NZ_CP042345_1	1.1|1449483|25|NZ_CP042345|CRISPRCasFinder	1449483-1449507	25	NZ_CP042531	Klebsiella aerogenes strain C9 plasmid pC9_001, complete sequence	158737-158761	5	0.8

1. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgccgccgcggcgaccgcttcggcc	Protospacer
** ****** *************  

2. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443392 (Rhodococcus hoagii strain PAM1340 plasmid pVAPA1340, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

3. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443389 (Rhodococcus hoagii strain PAM1357 plasmid pVAPA1357, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

4. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443403 (Rhodococcus hoagii strain PAM2288 plasmid pVAPA2288, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

5. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443388 (Rhodococcus hoagii strain PAM1216 plasmid pVAPA1216, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

6. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443393 (Rhodococcus hoagii strain PAM1637 plasmid pVAPA1637, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

7. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443402 (Rhodococcus hoagii strain PAM2285 plasmid pVAPA2285, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

8. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443390 (Rhodococcus hoagii strain PAM1422 plasmid pVAPA1422, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

9. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443395 (Rhodococcus hoagii strain PAM2282 plasmid pVAPA2282, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

10. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443404 (Rhodococcus hoagii strain PAM2287 plasmid pVAPA2287, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

11. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443405 (Rhodococcus hoagii strain PAM2279 plasmid pVAPA2279, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

12. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443391 (Rhodococcus hoagii strain PAM1600 plasmid pVAPA1600, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

13. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443394 (Rhodococcus hoagii strain PAM1643 plasmid pVAPA1643, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

14. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443396 (Rhodococcus hoagii strain PAM1271 plasmid pVAPA1271, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

15. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443406 (Rhodococcus hoagii strain PAM1413 plasmid pVAPB1413, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

16. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443397 (Rhodococcus hoagii strain PAM1475 plasmid pVAPB1475, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

17. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_KX443407 (Rhodococcus hoagii strain PAM1533 plasmid PVAPB1533, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

18. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_CP027795 (Rhodococcus hoagii strain DSSKP-R-001 plasmid plas2, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

19. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NC_005916 (Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
gtacgccgctgcgcccgcttcggca	Protospacer
  *********** ********* *

20. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_CP041646 (Rhodococcus hoagii strain WY plasmid pWY, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

21. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NC_014247 (Rhodococcus equi plasmid pVAPAMBE116, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

22. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NC_002576 (Rhodococcus equi 103 plasmid p103, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

23. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NC_011150 (Rhodococcus equi plasmid pVAPB1593, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

24. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NC_011151 (Rhodococcus equi plasmid pVAPA1037, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

25. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
ctccgccgcagcgaccgcttcggag	Protospacer
*  ****** **************.

26. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NC_004854 (Rhodococcus equi ATCC33701 plasmid pREAT701, complete sequence) position: , mismatch: 4, identity: 0.84

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
cgacgccgccgcgaccgctccgggt	Protospacer
*********.*********.***. 

27. spacer 1.1|1449483|25|NZ_CP042345|CRISPRCasFinder matches to NZ_CP042531 (Klebsiella aerogenes strain C9 plasmid pC9_001, complete sequence) position: , mismatch: 5, identity: 0.8

cgacgccgctgcgaccgcttcggaa	CRISPR spacer
atactccgctgcgaccgcttcggcc	Protospacer
  ** ******************  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	93175 : 103663	9	Streptomyces_phage(14.29%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP042345|93175:103663|DBSCAN-SWA
TTTAGGCGACGAGTCTCAGGTGCCCTGCTCCTCGCCTTGCGGTTAAGGCCACATTGGCAAGACCTTCGACGCTTGCCAAGCGTTCAGCAACTTCGCTGTCGAGATGGAATTGACGGCCGAGCCGCAAAACCGGTTCCAGGCCATGCCCAGTGCGCAGCCGCACCAGCACCTCGCCAGTGCCCGTGCCGTCCGGGCCGAGCAGTGCGGCGAGGTCATGCACCGCTTGCGGGTTAAGCACATCGAGCCGGAGTTGCATCTGCGCCGAACCCTTGACCTCTTCCAGCGGCCGTGCGCCGCGCACGGTAACGCGCGGTGGCTCGTCCGGACTGGGCGCGTCAAGTTCCACCGTCAGCAGCAGGCAGGTACCGTCCTTGGCCCAGGCCTGCATCGGCTCAACCAGCGATTCTTCGAAACAGGCGGCGCTGAACTGGCCGGAGCTATCGGAAAAGTCAGCGCGGACGAATTCGCCGCCCCTGCGCGTCCGCCCCTTGCTGACGCTTTCGACCATCACGGCCATCATCGCCTGCATCCGCCCACCGCCGGGCACCCCGGTTTCCATCAGCGCGGCATAGGTTCGCGCGCCATTGGCCGTGGCAACGGCGCGCCATTGCTCCACGGGATGCGCGGCGAAGTAGAAGCCAAAATTCTCGCGTTCCTTGGCCATCTGCTCCGCGCGCGGCCAGGGAGTCGTTTCGGCGAGGCGCAGCGAAGGCGCAGCATGATCCTCACCGCCAAACAGCCCAGCCTGCCCGCTCGAACGGGTGCGCTCAGCCTCATCGGCGACGGCCAGGAGCATGTCGGCATTGGCCAGCACCTTCGCGCGGTTAGGTTCAAGGCTGTCAAAGGCCCCGGCCCCGGCTAATCCTTCCAACTGACGACGGTTCATCGAACCTTGCGGCACACGGCGGAACAGGTCCTCAAGGGTAGCGAAGCGGCCATTTGCCTCGCGCTCGGCAACGATCGCATCCATCGCCTTTTCGCCGACATTGCGGATTCCCGCCAGGGCATAGCGCACGGCATGGCCTTCGTCGGTGCGCTCGACCGTGAACTCGGCCTCAGAGCGGTTGATGTCTGGTCCTGCCAGGGCAACGCCATTGCGCCGCATGTCATCGACGAAGATCGCAAGCTTTTCCGACTGGTGCATGTCGAAGCACATCGAGGCGGCATAGAATTCGTGCGGGTAATGGGTCTTCAGCCACGCGGTCTGGTAGGCCAGCAGGGCATAGGCGGCCGCGTGGCTTTTATTGAAGCCATAGCCGGCGAACTTGTCGATCAAATCGAACAGTTCGTTGGCCTTGGCGGGTTCGATCTCCGAATGCTCTTTGCAGCCCGACACGAAGCGCGAGCGCTGGGCGTCCATTTCGGCCTGGACCTTCTTGCCCATGGCGCGGCGCAAGAGGTCGGCATCGCCGAGCGAGTAGCCGGCCAGGATCTGCGCGGCCTGCATGACCTGTTCCTGGTACACGAAGATCCCGTAGGTCTCGGACAGGATGCCTTCGAGCTTGGGATGCGGGTACTCGATGGATTCGCTGCCGTTCTTGCGACGGCCGAACAGCGGGATGTTGTCCATCGGGCCAGGCCGGTAGAGCGAGACCAGCGCGATGATATCGCCGAAGTTGGTCGGCTTGACCGCCGCTAGGGTGCGCCGCATCCCTTCGGATTCGAGCTGGAACACGCCGACCGTGTCACCGCGCTGGAGCAGTTCATAGACTTCGGCATCGTCCCATGGCAGCGTCTCGAGATCGATCGCGATCTCACGCCGTTTGAGCAGCTCGACTGCTTTCTTCAGCACCGACAGCGTCTTCAGGCCGAGGAAGTCGAACTTGATGAGGCCGGTGTCCTCGACATACTTCATGTCGAACTGGGTCACCGGCATGTCAGAGCGCGGATCGCGGTAAAGCGGGACCAACTGGTCAAGCGGGCGATCGCCGATCACGACGCCAGCCGCGTGGGTCGAGCTATTACGCGGCTGGCCTTCGAGTTGGACGGCCAGGTCAACCAGCCGCTTCACCTCGGGATCGTTATCGTATTCGCGCTTGAGCTCGGCCACGCCGTTGAGCGCGCGCGGCAGGCTCCACGGGTCGGTCGGGTGGTTCGGGACCATCTTGCAGAGACGGTCGACCTGGCCATAGCTCATCTGCAGGATGCGGCCGCAGTCGCGCAACACGGCACGGGCCTTGAGCTTGCCGAAGGTGATGATCTGGGCGACGTGATCGGCGCCATACTTTGCCTGGACATAGCGGATCACCTCGCCGCGGCGGGTTTCGCAAAAGTCGATATCGAAGTCCGGCATCGAGACGCGTTCCGGGTTGAGGAAGCGTTCGAACAGCAGGCCCAGCCGCAGCGGATCGAGATCGGTGATGGTCAGCGCCCAGGCAACGACCGAACCCGCGCCCGAACCGCGCCCCGGCCCGACCGGGATGTCGTTGGCCTTGGCCCACTGGATGAAGTCGGCCACGATCAGAAAGTAACCGGCAAAGCCCATCCGGTTGATGACGTCGGTTTCGAAGTCGAGCCGGTCGAAATAGGCCTGGCGCTCCTCCTCGGGCAGCTCGCCATAGGGCGCAATGCGTTTTTCGAGGCCCGCGCGGGCGTGCTCGATCAGCATCCGCGCTTCGCCTTCCTTGTCCCCCGCCAGGCTTGGCAGCAGCGGTTTGCGCTTGGGCGGGGAGAAGGCACAGCGCTGGGCGATGACCAGGGTGTTGGCCAGCGCCTCGGGCAGGTCAGCGAACAGCTCGCGCATCATCGGCCCGGACTTGAGCCAGGATTCGCGAGGGGAGCGAGGCCGGTCAGGCGCATCGACGTGGGTCGAATTGGCGATGCAGAGCATGGCATCGTGCGCGGCGTGACCGCCTGGATCGGCGAAGTTTGCCGGGTTGGTCGCAACCAGCGGCAGATCGCGAGCATAGGCCAGGTCGATCAGCGCATCTTCGGCCGCTTCCTCAGTCGGATCGTTACGTCGGGCGACCTCCAGGTAAAGCCGTCCTGGAAACAGCCCTTCAAGGCGCGCGCAGAATTCAACAGCCGCCTCGCCTTTGCCTGCTGCAAGCAGGCGCACCAGTGCGCCCTCGCCTGCCCCGGTCAGCGCGATCAGGCCGTCGGTGTGGCCCTGGAGATCGGCCATGGTGACGTGGGGTTCGAACTCGATCGGCCGGCCGAGATGGGCGCGGCTGACGAGGTAGCAGAGGTTATTCCAGCCAGTCTCGTTCTGGGCGATCAGGCCCAGCCAGTCGATCACCGGATCCTTCCCCGCGGCAGCCTCTTCGCGGGACACGGCCAGGAAGGTACCGATCAGCGGCTGGATGCCTGCATCCTTGCAGGCCCCGGCAAAGGACATCGCGCCGTAAAGCCCGTTGCGATCGGTAATGGCGATGGCTGGAAAGGCGCGGTCTTTGGCCAGTTTCGCCGCCGCCTTGGGATCGATCGTCCCGTCGAGCATGGTGTAGCTCGAAAAGACGCGCAGCGGGACAAAACGTTCGTGGGCCATCCCCGCTAGATGCGGCCTGGATGGCCGATTCGGAAGGGGGTGCAGCGTGCTTTACCCACAGCGCCGAACCCCGCTCCGACAAGGTGCGTCACAGCAGCGCCTTGATGTCCTTTTCCAGAGCTTCGGGCTTGTCGGTCGGGGCATAGCGCCGCACCACCTTGCCATCGCGATCAATCAGGAACTTGGTGAAGTTCCACTTGATCGACTTGGTCCCCATCAGGCCCGGCGCCTCGCTCTTGAGCCAGTCGTAGAGCGGCGGGGCGTCATCCCCGTTGACGTCGATCTTGGCCATCAGCGGAAAGGTCACGTCGTACTTCAGGCTGCAGAAGTTGGCGATTTCCTCCGCATTGCCGGGTTCCTGCGCGCCGAACTGGTTGCAGGGGAAGGCGATCACTTCAAACCCGTCATCGGCGTACTTCTTGTAGAGCGCCTCCAGCCCTTCGTACTGCGGGGTGAAGCCGCATTTGCTGGCCGTGTTGACGATCAGCAGCACCTTGCCGGCCTTGTCCGCCAAATTGAGTTCGCCCCCGCCGGGCAGTTTAGCCGTGAAATCGGCAATGGTATGCATGTGCTGGAACTCCCCGAGTTGTTTGGATGGGAGACTAGGCGATGGCTTCGGCCCGTCAACCGCCTGCAAAGGCTAACCGACGCGACCTTCGTGCAGGCGCAGCACCCGGTCCATCCGGGCGGCCAGCCGCTCGTTATGGGTGGCGACCAGCGCGGCACTGGTCTGGCCGCGGACCAGGCTGACGAATTCGTCGAACACCCGGTCGGCGGTGGCTTCATCGAGATTGCCGGTCGGCTCGTCGGCCAGGACCAGTGCGGGGCGGTTCGAGAGTGCCCGGGCTACGGCGACGCGCTGCTGCTCACCGCCGGACAGCTGGCTTGGCCGATGATTGAGCCGCTCACCAAGCCCCAGCGCAGTCAGCAATTCTGTGGCACGGTTAGCCGCATCAGCCTCGCTTACCCCGGCCACCAGTTGCGGCAGGATCACGTTCTCCTGCGCGGTGAAGTCCGGCAGCAGGTGATGGAACTGATAGACAAAGCCAATCCGGTCGCGGCGCAGCGCGGTGCGGTCATCGGCCGAAAGCGAGCCGGCTTCCACGCCCGCGATCCGCAACGAGCCGCCGAAACCGCCTTCAAGCAAGCCGACGGCTTGCAGCAGCGTCGATTTGCCCGAGCCTGATGGCCCTAGCAGTGCAACGATCTCGCCCGGCTGGATTGCCAGGTCGACGCCGCGCAGCACGTCGATCCGCACGCCGCCCTGCTCAAAGCTACGGGTTAGGCCAGTGGTCTGGACAACAGCATCACTCATAGCGCAGCACCTGCACTGGATCGGTACTCGCCGCCTTGAAGGCCGGGTAAAGCGTGGCCAGGAAGCTGAACACCAGCGCCATGATCACGATCAGCACGATCTCGACCGGATCGGGCCGAGCGGGCAGTTCGGTCAAGAAGCGGATCTTGGGGTCCCACAGGTTCTGGCCGGTCAGCACCTCGATCACCCGGACGATCGACTGGCGGAAGAACAGGAAGGCTGCACCCAGGATCAGACCAGCAACAGTGCCGAGCGCGCCCACCACGAAGCCAACCGTGACGAAGACCTTGAGCAAGCTCTTCCGGCTCGCCCCCATTGTGCGCAGGATCGCAATATCCCGGGTCTTGGCGCGGACCAGCATGATCAGCGATGACAGGATATTGAACACCGCGACAAGCACGATGATCGAAAGCACCACAAACATCGCCACCCGCTCGACCGCCAGCGCCTCGAACAGGCTGGCATTCATCGACCGCCAGTCCGTCACCACGGCCTGTCCAGCAAGGCGCTGCGAGACGGGCTTCAGGATTTCGGTAACAGCATCGGGATCTGTCACCTGCACCTCGATCATCCCGATGGCGTCCCCCGTCAGCAGCAGGGTCTGCGCATCCTCGATTGGCATGACAACGAAGCGCTCGTCGAAATCGAACACTCCGATCTCAAAGATCGCGGCGACGCGGTAGGCGATCTCGCGCGGGACGGTGCCGAACGGCGTCGAGCGTCCCTGCGGGTTGATGATCGTCAGCGTATCGCCCACTCGGATGCCGAGATTTGCGGCCAACTGCGAGCCAATCGCGACCTCACCCGCTCCGGGTTTTAGCGGCGCGAGCGAGCCGGAGACCAGCTTCGGCTTCAACCGCTGGATATCCTCTGCAGTATTGCCGCGCGCAAAGACCAGGTCGACCCGGCCGTTGAAGCTGCCCATCTGCGGCTGCTCGATAAGGGGGGAGGCTTGGGTCACACCGGGGGTCTGGCGCACTTCCTGAAGTACGCTCTGCCAGTTCTCGATCCGCCCGCCGTAAGCCTGGACGATGGCGTGCCCATTGAGCCCGACGATCTTGTCGAAAAGTTCGGCGCGGAAGCCGTTCATCACGCTCATCACGATGACCAGCGCGGCCACGCCCAGCGCCACGGCAACCAGGCTGATCCCGGCGACCAGGGCAATGAACGCCTCGCTCCGCCCCGGCAGGAGGTAGCGTTTGACCAGCACCTTTTCGAAGGGAGAAAGCAGCAAGGATGGCCTCGGGGTGAGGGAAATTCGTCACGCTGGACTTAGGGCGATCACTTCGAAAGGGCAATGCTCGACAAACTATTGACAAATAGCATTGTTCCTGATATGTTCTGTACTTTCCATCTGGAGGTCGCCAAGTGGAGCGTCGTCAAAGCCACTCTCTCTTCGATACGTGGATGCGATCTGGGCGGCTGCCAGAATCAAGCGCCCCAGCAGAGCGTAAGTTTAATCCCTATCATGATCCCGACGATGGCCGATTCACGTTTGGGCCGGGCAATGCCGGTGCTTTACGCCCGCGCCAAGTGTCCTTGCAGTCGCGATCGGCCGGACAAACCAGGCAAGCGGCTTCTCCGTCCTCTCGGAAAGTGCCATCCGACCCGATCGGTGATATAATTGAACGGGAATTGCGCCGCTCAGGCGAAGGTAATGGTATGGCGGGTGGAGCCACTCAAGAGAGGGTTCAACAGGCCAAATCCGTTTTGACGCACTGGCCAATTGTGGGTGGTTCGGAAGCCATGCTCAACCGGGCGGACAAGCTGAACGAAGGCGGTCCGCGATATGGGGACAAGAGAGGCAAAGGGGCACACAAGGGAATCGATCTGAAGGCTCCAGCGGGCACGCTAGTTCGGTCCGCAGGAACAGGAGCGATCGTTGCAATTTCACCAAATCCTAGTCCCAGTTACGGCGTTCAAGTTGTGATCTATCATGGCAATGGAGTTTACACACATTATGCCCATCTTCAGCCCGGTTCTCCAACATTGCGCCCTGGTACCAAAGTTAAGGCCGGTGACGTGATCGGACGCGTAGGCCGAACTGGGAACACGCCGAGTACAGGTGACACGCATCTGCATTTTGAAGTCAGGATTGGATCTCCCAGGCCTGTCACAGCGGGTGGTAAAACAAGTGATCCGCTCAAGCTGCTTCCACGAAGCAGGCCGTGAAGCAGTTTCGATTTGCCATAGCGCTGGCAATCGCATCGCCAGCTGGTGCCAGCCAGACCGCTTTGCTATCATTGGATTCAATTGACGTGGGCAGACTGAAGCTCGGCCAAGTTGTCAACACGCTTCCATCGGGAGTGCGCAAGCGTCAGGACTGTACTGACAGGAAGGATCCCTTGTCCTGCACAGTTCTGCTGGACGACGGTATCTGGTATGTATTTGTTGATCGCAAAGTTGCCGACAAGACGATCGAACTGCCTTCAAAGGCTGTACCGTCCTGGATCGATCTTAAAGCCAGTCCCTCGACCGCAAAAGTCCAACTGGAGAAAAAAATTCGCCGAAAATTTCGGATGTGGACTCACGACTCGGGCGATGTGATTGTCGAAACAGATTTCTCAATTAGATCAAAATTCGGGAGTTATTTCAAAATCTCACTAAGCTTTAAAAAAGGGAGGGTAAATTTCATAAGTATCACGACACTTCCCGATCCCGAGGTTTGAAAATGGGCGAACGAAAAATTTGTCAACAGTCTGCCTGAGCCACCCAAGTGTCTAGTCAAAACGGAATAGGCTGACCGTCCCAGCCGTAAGCCTTCCCGCTATCGTCCAGGGTGAGGCCGTCGATCACGTCTAGCAAGTACCTCGCCGCCTCGTCCGGCGTGAACAGGCGCTGCCCTTCGCGCATGCTGGTGAAGGGGGCGGACAGGTCGGTAGCAACGGTGCCGGGATGGAGTGCGGCGACTACGGCCTGTGGATGGGTGCGGCGCAGTTCGATCGCAAAGTTCCGCAGGATCATGTTAAGCGCCGCCTTGCTGGCGCGATAGGCGTGCCAGCCGCCGAGGCGGTTGTCAGCTATCGAGCCGACCCGGGCGGTGAGCGCGGCAAAGACTGCCCGCTCGCGGCGCGGCAGCAGCGGCAGGAAGTGCTTGCCGATCAACGCTGGCCCGGTGGCATTGATGGCAAAGGCATGGGCATAGGCAGCGGGGTCCTGCGCCTTGTAGGTCTTCTCAGGCTGGAAATCGGGGCCACCGGAGAGGACGCCGGTTGCTACGAAGACCAGTGACACATTTCCACCGATCCGGCCGGCGGCGGACGCGATGCTGGCTTCGTCGGTCAGGTCAAAGGCAAAAGGCACTGCCCCCGCCGGCGCAGCCTGACCCGAGCGCGACCCGGCCCAGATGCGCTCATACCGCCCCTTGGCCACGACGGCTTCGACCAGCGCCGCGCCGATCCCGCCGCTTGCCCCGAAGATAACGGCCTGGCTCAATAGCCCATCAGGCTGAGCACTTCCTTGCGGCTGCGCTCGTCTTCCAGGAAGCAACCGAGCATCCGGCTAGTGACCATGCCGACCCCCGGCGTACGCACGCCGCGGCCAGTCATGCAGCCATGCTGCGCCTCGATCACCACAGCAACGCCATGTGGTTGGAGGTGATCCCAGATGCACTGCGCAACTTCGGCGGTCAGGCGTTCCTGGATCTGGAGACGACGGGCGAAGCCGTGCAGAACACGCGCCAGCTTCGAGATGCCGACCACCCGGTTCTTGGGCAGATAGGCGATCGAGGCCTTGCCTGTGATCGGGGCCATGTGGTGCTCGCAGTGCGACTGGAAAGGAATGTCCTTGAGCAGCACGACCTCGTCATAGCCGCCAACTTCCTCGAAAGTGCGCGAGAGGTGCAGTGCCGGGTCTTCCTCGTTCCCCTGGCAGTATTCGCGCCAGGCGCGCGCGACACGGGCCGGGGTGTCGATCAGGCCTTCGCGTGAGGGGTCCTCGCCAGCCCAGCGCAGCAGGGTGCGCAGCGCGTCCTGGACCTCGTCAGGGACGACCAGCTTGGTCTCACCCTCATCATGGTCAAGGTGACTGGTCATGTAGTTCATGGCGTTGGTCCTTCCTTCCCCCGAGTGTCCCGATCTGGGCCTGCCTCAACCCCTTCGCAACCCCGTCTTTGGACCGCCCTTGGGGACGGATGCGAAGCCATGCTTGCCTTGCGGCGCGAGTCCGGCCAAAGGCGCTGGCGAAGCGCGAGCGCACAGGCAGGCGATTCCATCATGAACATCACTCACCCGTTCCTGGACAGCGACGGCGACAAGCTGCGCGAGGAATGCGGCATCTTCGGCGTGATCGGCAGTCCCGAAGCCGCCGCCATCACCGCGCTGGGCCTGCACGCCCTGCAGCATCGCGGGCAGGAAGCCTGCGGCATCGTCAGCTGGGACGGCCACGAATTCTTCGCCCGCCGCGGCCTGGGCCATGTTGCCCAGGTGTTTGCCGACCAGACGATCATCAATGAATTGCCTGGTCACATGGCCTCTGGCCACGTCCGCTATTCGACCACCGGCGGCCAGGGCCTGCGCAATGTCCAGCCGCTCCATGCCGACCTGGCGCGTGGCGGGTTCTCGATCGCCCACAATGGCAACATTTCCAACGCCATGCACCTCAAGCAGGAGCTGGTCGACAAGGGCGCGATCTTCCAGTCGACGTCCGATACCGAGGTGATCATCCACCTGATTGCGACCAGCCGTTATCCGACCCTGCTTGACCGCTTCGTCGATGCGCTGCGGATGGTCGAAGGCGCCTATTCGCTGATCTGCCAGACGCCGAAGCGGATGATCGCCTGCCGCGATCCGCTGGGCATTCGCCCGCTGGTAATGGGCAAGATTGGCGATGCCACGGTCTTTGCCAGCGAAACGGTCGCGCTTGACGTGGTCGGCGCGCAGTTCGTGCGCGAGATCGAGCCGGGTGAGATTGTCGAAGTGCGCCAGGATGGCCGGTTGTCATCGCACCGCCCCTTCGGCCGCCCCTCGCCGCGTCCCTGTATCTTCGAGCACGTCTATTTCAGCCGGCCAGACTCGGTTTCGGGCGGGCAGTCGGTTTACGAAGTGCGGCGCAAGATCGGGATCGAGCTGGCCCGCGAAGCCCCGGTCGAGGCCGATCTGGTCGTACCGGTACCTGATAGCGGCGTGCCGGCGGCGATCGGCTTTGCCCAGGAAAGCGGCATTCCCTTTGGCCTGGGCATCATCCGTTCGCACTATGTCGGGCGGACCTTCATCCAGCCATCGGACGGCGCCCGCCATGCCGACGTCAAGCGCAAGCACAACGCCAACCGCGCGCTGGTCGAAGGCAAGCGGATTGTTCTCATCGATGACTCGATCGTGCGCGGCACGACTTCAATGAAGATCGTGCAGATGATGCGCGATGCCGGAGCCAAGGAAGTGCACTTCCGCGTTGCCAGCCCGCCGACCAACAATTCCTGCTTCTATGGCGTCGACACGCCTGAGCGGCACAAGCTGCTCGCCGCGCGGATGGACTTGCAGGAAATGACCAAGTTCATCGTTGCCGACAGCCTGGCTTTCGTTTCGATCGACGGGCTTTACCGCGCGGTCGGTGAAAATGGCCGCAATGCCGCCTGCCCGCAGCACTGCGATGCCTGCTTCACCGGAGACTATCCGACCAAGCTGACCGACCTGGCCGATCGTGCTGCCGAAGCCGATCAGCTCAACCTGCCAGTCGGGAAAGTCGCGTGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP042345|93175:103663|96749_97229_-|WP_147088696.1|DBSCAN-SWA
MHTIADFTAKLPGGGELNLADKAGKVLLIVNTASKCGFTPQYEGLEALYKKYADDGFEVIAFPCNQFGAQEPGNAEEIANFCSLKYDVTFPLMAKIDVNGDDAPPLYDWLKSEAPGLMGTKSIKWNFTKFLIDRDGKVVRRYAPTDKPEALEKDIKALL
>NZ_CP042345|93175:103663|100144_100645_+|WP_147088700.1|DBSCAN-SWA
MKQFRFAIALAIASPAGASQTALLSLDSIDVGRLKLGQVVNTLPSGVRKRQDCTDRKDPLSCTVLLDDGIWYVFVDRKVADKTIELPSKAVPSWIDLKASPSTAKVQLEKKIRRKFRMWTHDSGDVIVETDFSIRSKFGSYFKISLSFKKGRVNFISITTLPDPEV
>NZ_CP042345|93175:103663|99572_100148_+|WP_161597857.1|DBSCAN-SWA
MPSDPIGDIIERELRRSGEGNGMAGGATQERVQQAKSVLTHWPIVGGSEAMLNRADKLNEGGPRYGDKRGKGAHKGIDLKAPAGTLVRSAGTGAIVAISPNPSPSYGVQVVIYHGNGVYTHYAHLQPGSPTLRPGTKVKAGDVIGRVGRTGNTPSTGDTHLHFEVRIGSPRPVTAGGKTSDPLKLLPRSRP
>NZ_CP042345|93175:103663|97968_99210_-|WP_147088698.1|DBSCAN-SWA
MLLSPFEKVLVKRYLLPGRSEAFIALVAGISLVAVALGVAALVIVMSVMNGFRAELFDKIVGLNGHAIVQAYGGRIENWQSVLQEVRQTPGVTQASPLIEQPQMGSFNGRVDLVFARGNTAEDIQRLKPKLVSGSLAPLKPGAGEVAIGSQLAANLGIRVGDTLTIINPQGRSTPFGTVPREIAYRVAAIFEIGVFDFDERFVVMPIEDAQTLLLTGDAIGMIEVQVTDPDAVTEILKPVSQRLAGQAVVTDWRSMNASLFEALAVERVAMFVVLSIIVLVAVFNILSSLIMLVRAKTRDIAILRTMGASRKSLLKVFVTVGFVVGALGTVAGLILGAAFLFFRQSIVRVIEVLTGQNLWDPKIRFLTELPARPDPVEIVLIVIMALVFSFLATLYPAFKAASTDPVQVLRYE
>NZ_CP042345|93175:103663|100700_101411_-|WP_147088701.1|DBSCAN-SWA
MSQAVIFGASGGIGAALVEAVVAKGRYERIWAGSRSGQAAPAGAVPFAFDLTDEASIASAAGRIGGNVSLVFVATGVLSGGPDFQPEKTYKAQDPAAYAHAFAINATGPALIGKHFLPLLPRRERAVFAALTARVGSIADNRLGGWHAYRASKAALNMILRNFAIELRRTHPQAVVAALHPGTVATDLSAPFTSMREGQRLFTPDEAARYLLDVIDGLTLDDSGKAYGWDGQPIPF
>NZ_CP042345|93175:103663|97301_97976_-|WP_147088697.1|DBSCAN-SWA
MSDAVVQTTGLTRSFEQGGVRIDVLRGVDLAIQPGEIVALLGPSGSGKSTLLQAVGLLEGGFGGSLRIAGVEAGSLSADDRTALRRDRIGFVYQFHHLLPDFTAQENVILPQLVAGVSEADAANRATELLTALGLGERLNHRPSQLSGGEQQRVAVARALSNRPALVLADEPTGNLDEATADRVFDEFVSLVRGQTSAALVATHNERLAARMDRVLRLHEGRVG
>NZ_CP042345|93175:103663|101407_102010_-|WP_147091471.1|DBSCAN-SWA
MTSHLDHDEGETKLVVPDEVQDALRTLLRWAGEDPSREGLIDTPARVARAWREYCQGNEEDPALHLSRTFEEVGGYDEVVLLKDIPFQSHCEHHMAPITGKASIAYLPKNRVVGISKLARVLHGFARRLQIQERLTAEVAQCIWDHLQPHGVAVVIEAQHGCMTGRGVRTPGVGMVTSRMLGCFLEDERSRKEVLSLMGY
>NZ_CP042345|93175:103663|93175_96661_-|WP_147088695.1|DBSCAN-SWA
MAHERFVPLRVFSSYTMLDGTIDPKAAAKLAKDRAFPAIAITDRNGLYGAMSFAGACKDAGIQPLIGTFLAVSREEAAAGKDPVIDWLGLIAQNETGWNNLCYLVSRAHLGRPIEFEPHVTMADLQGHTDGLIALTGAGEGALVRLLAAGKGEAAVEFCARLEGLFPGRLYLEVARRNDPTEEAAEDALIDLAYARDLPLVATNPANFADPGGHAAHDAMLCIANSTHVDAPDRPRSPRESWLKSGPMMRELFADLPEALANTLVIAQRCAFSPPKRKPLLPSLAGDKEGEARMLIEHARAGLEKRIAPYGELPEEERQAYFDRLDFETDVINRMGFAGYFLIVADFIQWAKANDIPVGPGRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQAKYGADHVAQIITFGKLKARAVLRDCGRILQMSYGQVDRLCKMVPNHPTDPWSLPRALNGVAELKREYDNDPEVKRLVDLAVQLEGQPRNSSTHAAGVVIGDRPLDQLVPLYRDPRSDMPVTQFDMKYVEDTGLIKFDFLGLKTLSVLKKAVELLKRREIAIDLETLPWDDAEVYELLQRGDTVGVFQLESEGMRRTLAAVKPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGSESIEYPHPKLEGILSETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRSRFVSGCKEHSEIEPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAASMCFDMHQSEKLAIFVDDMRRNGVALAGPDINRSEAEFTVERTDEGHAVRYALAGIRNVGEKAMDAIVAEREANGRFATLEDLFRRVPQGSMNRRQLEGLAGAGAFDSLEPNRAKVLANADMLLAVADEAERTRSSGQAGLFGGEDHAAPSLRLAETTPWPRAEQMAKERENFGFYFAAHPVEQWRAVATANGARTYAALMETGVPGGGRMQAMMAVMVESVSKGRTRRGGEFVRADFSDSSGQFSAACFEESLVEPMQAWAKDGTCLLLTVELDAPSPDEPPRVTVRGARPLEEVKGSAQMQLRLDVLNPQAVHDLAALLGPDGTGTGEVLVRLRTGHGLEPVLRLGRQFHLDSEVAERLASVEGLANVALTARRGAGHLRLVA
>NZ_CP042345|93175:103663|102190_103663_+|WP_147088702.1|DBSCAN-SWA
MNITHPFLDSDGDKLREECGIFGVIGSPEAAAITALGLHALQHRGQEACGIVSWDGHEFFARRGLGHVAQVFADQTIINELPGHMASGHVRYSTTGGQGLRNVQPLHADLARGGFSIAHNGNISNAMHLKQELVDKGAIFQSTSDTEVIIHLIATSRYPTLLDRFVDALRMVEGAYSLICQTPKRMIACRDPLGIRPLVMGKIGDATVFASETVALDVVGAQFVREIEPGEIVEVRQDGRLSSHRPFGRPSPRPCIFEHVYFSRPDSVSGGQSVYEVRRKIGIELAREAPVEADLVVPVPDSGVPAAIGFAQESGIPFGLGIIRSHYVGRTFIQPSDGARHADVKRKHNANRALVEGKRIVLIDDSIVRGTTSMKIVQMMRDAGAKEVHFRVASPPTNNSCFYGVDTPERHKLLAARMDLQEMTKFIVADSLAFVSIDGLYRAVGENGRNAACPQHCDACFTGDYPTKLTDLADRAAEADQLNLPVGKVA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147088695.1|93175_96661_-	DNA polymerase III subunit alpha	A0A291AVG1	Streptomyces_phage	2.2e-177	36.4
WP_147088696.1|96749_97229_-	redoxin domain-containing protein	Q6VZR0	Canarypox_virus	2.2e-27	42.1
WP_147088697.1|97301_97976_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	5.4e-32	38.5
WP_147088698.1|97968_99210_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_161597857.1|99572_100148_+	peptidoglycan DD-metalloendopeptidase family protein	A0A1B0XUH3	Freshwater_phage	1.9e-09	40.2
WP_147088700.1|100144_100645_+	hypothetical protein	NA	NA	NA	NA
WP_147088701.1|100700_101411_-	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	1.0e-28	41.6
WP_147091471.1|101407_102010_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	4.5e-46	47.3
WP_147088702.1|102190_103663_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-45	32.0