CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP042375	Leuconostoc carnosum strain CBA3620 plasmid unnamed1, complete sequence	0 crisprs	NA	5
NZ_CP042374	Leuconostoc carnosum strain CBA3620 chromosome, complete genome	0 crisprs	DEDDh,csa3,cas3	2
NZ_CP042376	Leuconostoc carnosum strain CBA3620 plasmid unnamed2, complete sequence	0 crisprs	csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 12107

Escherichia_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010015794.1\|1493_2342_+	ParA family protein	F0PIG8	Enterococcus_phage	1.2e-47	41.0
WP_010015795.1\|2334_2655_+	hypothetical protein	NA	NA	NA	NA
WP_147000491.1\|3607_4210_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	2.2e-21	36.5
WP_147000492.1\|4544_5114_-	recombinase family protein	A0A0A8WIK3	Clostridium_phage	4.3e-30	42.9
WP_147000493.1\|5308_6079_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.6e-35	35.5
WP_147000531.1\|6135_6309_-\|transposase	transposase	NA	NA	NA	NA
WP_147000494.1\|8710_9544_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	1.7e-27	34.5
WP_147000495.1\|9583_10621_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.3e-72	45.4
WP_147000496.1\|10635_11229_-	dTDP-4-keto-6-deoxy-D-glucose epimerase	I7HJC4	Enterobacteria_phage	3.3e-09	29.0
WP_147000497.1\|11234_12107_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	4.0e-96	61.1

DBSCAN-SWA_2

17998 : 21674

Catovirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147000504.1\|17998_19051_-	NAD-dependent epimerase/dehydratase family protein	Q58M85	Prochlorococcus_phage	1.1e-10	25.7
WP_147000505.1\|19077_19800_-	D-ribitol-5-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_147000506.1\|19866_20787_-	glycosyltransferase	A0A1V0SAH6	Catovirus	2.8e-07	27.0
WP_147000507.1\|20786_21674_-	hypothetical protein	A0A1V0SAS8	Catovirus	1.3e-06	41.8

DBSCAN-SWA_3

25139 : 37233

Clostridium_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014975081.1\|25139_25697_+	recombinase family protein	A0A0A8WIK3	Clostridium_phage	8.4e-31	43.2
WP_014335270.1\|26117_26444_-	thioredoxin family protein	NA	NA	NA	NA
WP_014335269.1\|27241_27859_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_014335268.1\|27986_28325_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_135400486.1\|28454_30251_+	elongation factor 4	A0A2K9L2P9	Tupanvirus	6.9e-18	40.3
WP_014975083.1\|30443_31223_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014335266.1\|31244_31502_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_146958356.1\|31522_33166_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010276702.1\|33176_33503_-	thioredoxin	A0A0A7CHH9	Dinoroseobacter_phage	4.8e-10	30.2
WP_014335264.1\|33625_36133_-	ATP-binding cassette domain-containing protein	A0A1B1IVR3	uncultured_Mediterranean_phage	2.5e-138	32.4
WP_147000512.1\|36148_36571_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014335262.1\|36721_36913_+	hypothetical protein	NA	NA	NA	NA
WP_014335261.1\|36930_37233_-	hypothetical protein	E3W8I0	Leuconostoc_phage	1.6e-20	54.9

DBSCAN-SWA_4

44312 : 44585

Campylobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002816186.1\|44312_44585_-	type II toxin-antitoxin system RelE/ParE family toxin	X2KQ37	Campylobacter_phage	3.7e-08	37.8

DBSCAN-SWA_5

51956 : 57668

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147000525.1\|51956_53144_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.6e-29	29.3
WP_147000526.1\|53124_53436_-	hypothetical protein	NA	NA	NA	NA
WP_147000527.1\|53890_54979_-	Flp pilus assembly complex ATPase component	A0A1S5SFB5	Streptococcus_phage	2.6e-44	32.9
WP_147000528.1\|54972_55419_-	hypothetical protein	NA	NA	NA	NA
WP_147000529.1\|55440_56148_-	hypothetical protein	NA	NA	NA	NA
WP_147000530.1\|56371_56563_-	hypothetical protein	NA	NA	NA	NA
WP_135198180.1\|57287_57668_+	helix-turn-helix transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	1.2e-09	35.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP042374

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1018416 : 1075152

Lactobacillus_phage(20.0%)

transposase,capsid,head,protease,portal,tail,terminase,integrase

attL 1020179:1020193|attR 1073969:1073983

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_105451717.1\|1018416_1019486_-\|transposase	IS3-like element IS1163 family transposase	A0A1P8CWQ3	Bacillus_phage	6.3e-35	33.2
WP_014975027.1\|1020119_1020305_+	hypothetical protein	NA	NA	NA	NA
1020179:1020193	attL	NA	NA	NA	NA
WP_014975026.1\|1020461_1021139_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014975025.1\|1021298_1022231_-	ribonucleoside hydrolase RihC	NA	NA	NA	NA
WP_014975024.1\|1022260_1023484_-	nucleoside transporter	NA	NA	NA	NA
WP_014975023.1\|1024065_1025364_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_014975022.1\|1025379_1026084_+	response regulator transcription factor	NA	NA	NA	NA
WP_014975021.1\|1026192_1028049_+	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_014975020.1\|1028142_1028949_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_014975019.1\|1028963_1029869_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014975018.1\|1029939_1030479_-	DUF1440 domain-containing protein	NA	NA	NA	NA
WP_147000442.1\|1030826_1031888_+	BMP family ABC transporter substrate-binding protein	A0A0A7DN02	Lactobacillus_phage	2.5e-60	37.1
WP_014975016.1\|1032250_1032811_-	transporter	NA	NA	NA	NA
WP_014975015.1\|1033116_1033509_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014975014.1\|1033505_1034411_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.4e-19	31.6
WP_147000487.1\|1034407_1035274_+	hypothetical protein	NA	NA	NA	NA
WP_014975012.1\|1035303_1036209_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-39	41.0
WP_014975011.1\|1036212_1036980_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_014975010.1\|1037062_1037923_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.3e-50	38.7
WP_014975009.1\|1038050_1038932_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_014975008.1\|1038928_1039369_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_014975007.1\|1039582_1040335_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.0e-28	37.0
WP_014975006.1\|1040336_1042349_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_014975005.1\|1042356_1043010_+	response regulator transcription factor	NA	NA	NA	NA
WP_014975004.1\|1042996_1043869_+	sensor histidine kinase	NA	NA	NA	NA
WP_014975003.1\|1043957_1044713_+	hypothetical protein	NA	NA	NA	NA
WP_014975002.1\|1044726_1045341_+	AAA family ATPase	A0A1V0SE00	Indivirus	2.9e-08	27.8
WP_014975001.1\|1045713_1047531_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_014975000.1\|1047599_1049060_-	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	1.4e-61	31.5
WP_014974999.1\|1049224_1050442_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.2e-44	30.9
WP_147000443.1\|1050763_1052119_+	sodium:proton antiporter	NA	NA	NA	NA
WP_014974997.1\|1052148_1052487_-	hypothetical protein	NA	NA	NA	NA
WP_014974996.1\|1052583_1053582_-	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_014974995.1\|1053724_1054549_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014974994.1\|1054716_1055373_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_014974993.1\|1055467_1057285_+	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	6.2e-75	36.1
WP_147000444.1\|1058065_1058680_-	helix-turn-helix domain-containing protein	L0P7E1	Lactobacillus_phage	4.2e-07	42.9
WP_147000445.1\|1058828_1059023_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_147000446.1\|1059107_1059992_+	DNA primase	NA	NA	NA	NA
WP_147000447.1\|1059991_1061230_+	virulence protein E	A0A1B0Y896	Lactobacillus_phage	1.2e-88	47.1
WP_147000448.1\|1061687_1062005_+	hypothetical protein	NA	NA	NA	NA
WP_147000449.1\|1062015_1062255_+	hypothetical protein	NA	NA	NA	NA
WP_147000450.1\|1062254_1062452_+	hypothetical protein	NA	NA	NA	NA
WP_147000451.1\|1062461_1062872_+	DUF722 domain-containing protein	A0A097BYG4	Leuconostoc_phage	6.2e-15	33.9
WP_147000452.1\|1062948_1063449_+	HNH endonuclease	Q9AZM8	Lactococcus_phage	1.7e-51	57.2
WP_147000453.1\|1063787_1064264_+\|terminase	phage terminase small subunit P27 family	Q5K5J8	Oenococcus_phage	3.7e-11	35.9
WP_147000454.1\|1064260_1066096_+\|terminase	terminase large subunit	Q9AZM6	Lactococcus_phage	2.0e-206	59.0
WP_147000455.1\|1066269_1067343_+\|portal	phage portal protein	Q9AZM4	Lactococcus_phage	7.3e-108	56.4
WP_147000456.1\|1067339_1067909_+\|head,protease	HK97 family phage prohead protease	Q9AZM3	Lactococcus_phage	1.0e-44	54.7
WP_147000457.1\|1067920_1069063_+\|capsid	phage major capsid protein	A0A2H4J7D0	uncultured_Caudovirales_phage	3.0e-51	40.6
WP_147000458.1\|1069118_1069418_+\|head,tail	phage gp6-like head-tail connector protein	A0A2P0ZLF2	Lactobacillus_phage	1.3e-09	41.9
WP_147000459.1\|1069410_1069758_+\|head	phage head closure protein	Q6J1Y0	Lactobacillus_phage	2.8e-16	43.8
WP_147000460.1\|1069767_1069965_+	hypothetical protein	NA	NA	NA	NA
WP_147000488.1\|1069964_1070153_+	hypothetical protein	A0A097BYD9	Leuconostoc_phage	1.8e-22	79.3
WP_147000461.1\|1070262_1071390_+\|integrase	tyrosine-type recombinase/integrase	A0A097BYJ7	Leuconostoc_phage	4.4e-180	82.7
WP_041773240.1\|1071837_1072605_+	helix-turn-helix transcriptional regulator	Q0H244	Geobacillus_phage	4.9e-05	29.4
WP_014974991.1\|1072631_1072871_-	hypothetical protein	NA	NA	NA	NA
WP_014974990.1\|1073073_1073448_-	hypothetical protein	NA	NA	NA	NA
WP_014974989.1\|1073488_1073776_-	hypothetical protein	NA	NA	NA	NA
WP_014974988.1\|1074030_1075152_-	acetylornithine/succinylornithine family transaminase	A0A1V0SKB7	Klosneuvirus	5.6e-18	28.4
1073969:1073983	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1568786 : 1577541

Cyanophage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014974525.1\|1568786_1569272_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-19	41.8
WP_014974524.1\|1569268_1570390_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_014974523.1\|1570370_1571114_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	9.5e-38	38.0
WP_014974522.1\|1571124_1571391_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014974521.1\|1571387_1572062_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_014974520.1\|1572120_1574340_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.8e-140	38.2
WP_014974519.1\|1574321_1575935_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-47	32.8
WP_014974518.1\|1575931_1576957_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	5.6e-57	40.6
WP_014974517.1\|1576950_1577541_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	8.6e-26	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042375

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP042374

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection