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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042402 Weissella hellenica strain CBA3632 plasmid unnamed3, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP042400 Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP042401 Weissella hellenica strain CBA3632 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP042399 Weissella hellenica strain CBA3632 chromosome, complete genome 3 crisprs cas3,csa3,DEDDh,DinG,RT 0 0 152 0
NZ_CP042403 Weissella hellenica strain CBA3632 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP042399
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042399_1 478379-478540 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042399_2 783935-784037 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042399_3 1764332-1764423 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1119 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_2 4337 : 9902 5 Tupanvirus(25.0%) tRNA NA
DBSCAN-SWA_3 18141 : 19718 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 26394 : 27399 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_5 39272 : 41393 2 Lactobacillus_virus(50.0%) NA NA
DBSCAN-SWA_6 50669 : 51899 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_7 55475 : 56174 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_8 64723 : 69775 4 Acanthamoeba_castellanii_mimivirus(50.0%) tRNA NA
DBSCAN-SWA_9 78354 : 87575 6 Moraxella_phage(33.33%) tRNA NA
DBSCAN-SWA_10 110944 : 111595 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_11 118769 : 136218 21 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_12 149172 : 151410 4 Indivirus(50.0%) NA NA
DBSCAN-SWA_13 155567 : 167476 9 Gordonia_phage(20.0%) tRNA NA
DBSCAN-SWA_14 178358 : 186713 5 uncultured_virus(33.33%) tRNA NA
DBSCAN-SWA_15 191693 : 202110 12 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_16 206321 : 208494 3 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_17 223387 : 230855 6 Staphylococcus_virus(33.33%) integrase attL 213676:213690|attR 231722:231736
DBSCAN-SWA_18 234097 : 238786 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_19 246519 : 247866 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_20 259954 : 261775 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_21 265621 : 266662 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_22 272464 : 273580 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_23 280334 : 289596 8 Bacillus_phage(25.0%) protease NA
DBSCAN-SWA_24 293109 : 304251 11 Streptococcus_phage(33.33%) protease NA
DBSCAN-SWA_25 314771 : 318154 5 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_26 333032 : 335333 2 Oenococcus_phage(50.0%) NA NA
DBSCAN-SWA_27 341338 : 341881 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_28 347966 : 349651 2 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_29 354419 : 355154 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_30 362198 : 362819 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_31 367703 : 382305 13 Bacillus_virus(25.0%) tRNA NA
DBSCAN-SWA_32 399853 : 414573 18 Streptococcus_phage(42.86%) tRNA NA
DBSCAN-SWA_33 423097 : 423499 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_34 427233 : 440608 6 uncultured_Mediterranean_phage(40.0%) protease,tRNA NA
DBSCAN-SWA_35 447520 : 454654 7 Enterobacteria_phage(25.0%) NA NA
DBSCAN-SWA_36 461338 : 468366 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_37 471567 : 475170 4 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_38 478669 : 479500 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_39 482571 : 487772 5 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_40 492194 : 498511 8 Tokyovirus(33.33%) tRNA NA
DBSCAN-SWA_41 505457 : 516561 9 Aichi_virus(20.0%) NA NA
DBSCAN-SWA_42 520689 : 526282 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_43 530100 : 538523 9 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_44 546230 : 546716 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_45 584538 : 586927 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_46 591723 : 603201 9 Streptococcus_phage(33.33%) protease NA
DBSCAN-SWA_47 607536 : 610707 4 Planktothrix_phage(50.0%) protease NA
DBSCAN-SWA_48 614020 : 619361 4 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_49 624492 : 625272 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_50 633292 : 639715 7 Enterobacteria_phage(25.0%) NA NA
DBSCAN-SWA_51 643285 : 652523 10 Streptococcus_phage(16.67%) NA NA
DBSCAN-SWA_52 657913 : 662113 4 Yellowstone_lake_phycodnavirus(33.33%) NA NA
DBSCAN-SWA_53 665846 : 666497 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_54 678423 : 679110 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_55 687737 : 695334 4 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_56 701983 : 704155 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_57 714455 : 716459 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_58 724532 : 725985 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_59 734433 : 735198 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_60 746516 : 747179 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_61 762354 : 763311 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_62 772904 : 778197 4 Tupanvirus(66.67%) tRNA NA
DBSCAN-SWA_63 784159 : 811230 40 Lactobacillus_phage(22.73%) portal,integrase,terminase attL 768391:768406|attR 814095:814110
DBSCAN-SWA_64 816891 : 828431 14 Listeria_phage(37.5%) plate NA
DBSCAN-SWA_65 842131 : 845720 3 Synechococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_66 852736 : 855742 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_67 865420 : 872113 5 Vaccinia_virus(33.33%) NA NA
DBSCAN-SWA_68 884780 : 885974 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_69 892788 : 898132 4 Ostreococcus_lucimarinus_virus(50.0%) NA NA
DBSCAN-SWA_70 905108 : 915321 8 Erysipelothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_71 921634 : 923062 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_72 929961 : 933753 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_73 936889 : 966421 27 Bacillus_phage(14.29%) NA NA
DBSCAN-SWA_74 975559 : 978311 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_75 984725 : 992372 6 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_76 995399 : 1000118 4 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_77 1010215 : 1014206 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_78 1025532 : 1028383 2 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_79 1036646 : 1042127 3 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_80 1047242 : 1051880 3 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_81 1055443 : 1056280 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_82 1060673 : 1064990 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_83 1070711 : 1071317 1 Rhodococcus_phage(100.0%) NA NA
DBSCAN-SWA_84 1077569 : 1078862 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_85 1089654 : 1090407 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_86 1096307 : 1097642 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_87 1101563 : 1106887 7 Lactococcus_phage(66.67%) integrase attL 1096870:1096882|attR 1105142:1105154
DBSCAN-SWA_88 1110365 : 1125796 15 Leuconostoc_phage(40.0%) NA NA
DBSCAN-SWA_89 1130271 : 1140389 11 Agrobacterium_phage(25.0%) NA NA
DBSCAN-SWA_90 1144740 : 1146731 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_91 1156581 : 1157685 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_92 1161388 : 1173734 13 Staphylococcus_phage(28.57%) tRNA NA
DBSCAN-SWA_93 1178540 : 1179899 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_94 1184029 : 1186225 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_95 1202340 : 1202727 1 Staphylococcus_virus(100.0%) NA NA
DBSCAN-SWA_96 1209527 : 1210448 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_97 1214526 : 1216350 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_98 1219417 : 1220323 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_99 1225774 : 1227070 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_100 1236010 : 1236799 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_101 1241543 : 1242266 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_102 1248491 : 1256548 7 Streptococcus_phage(20.0%) protease NA
DBSCAN-SWA_103 1259691 : 1264694 4 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_104 1279521 : 1280700 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_105 1284781 : 1288111 3 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_106 1305353 : 1306932 2 Catovirus(100.0%) NA NA
DBSCAN-SWA_107 1320370 : 1322056 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_108 1333689 : 1334244 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_109 1337865 : 1351553 12 Streptococcus_phage(16.67%) NA NA
DBSCAN-SWA_110 1359293 : 1362282 3 Indivirus(50.0%) NA NA
DBSCAN-SWA_111 1368354 : 1368801 1 uncultured_marine_virus(100.0%) NA NA
DBSCAN-SWA_112 1375925 : 1378178 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_113 1381777 : 1382893 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_114 1386182 : 1387649 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_115 1405160 : 1416115 10 Lactobacillus_phage(25.0%) NA NA
DBSCAN-SWA_116 1422155 : 1430098 7 Micromonas_pusilla_virus(25.0%) NA NA
DBSCAN-SWA_117 1443427 : 1446633 6 Phage_Wrath(50.0%) tRNA NA
DBSCAN-SWA_118 1453124 : 1465874 8 Paramecium_bursaria_Chlorella_virus(16.67%) tRNA NA
DBSCAN-SWA_119 1469425 : 1470334 1 Virus_Rctr41k(100.0%) NA NA
DBSCAN-SWA_120 1475151 : 1476594 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_121 1481085 : 1485308 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_122 1500584 : 1501784 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_123 1514616 : 1518492 3 Erysipelothrix_phage(33.33%) NA NA
DBSCAN-SWA_124 1521523 : 1529813 7 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_125 1543474 : 1558394 15 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_126 1562065 : 1565446 6 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_127 1578057 : 1579341 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_128 1585535 : 1591075 5 Aeromonas_phage(33.33%) integrase,transposase attL 1569443:1569459|attR 1594443:1594459
DBSCAN-SWA_129 1604648 : 1609217 6 Only_Syngen_Nebraska_virus(33.33%) tRNA NA
DBSCAN-SWA_130 1613663 : 1621489 6 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_131 1625212 : 1629974 3 Acanthamoeba_polyphaga_moumouvirus(50.0%) tRNA NA
DBSCAN-SWA_132 1636069 : 1648247 14 Bacillus_phage(60.0%) portal NA
DBSCAN-SWA_133 1655940 : 1663922 6 Lactobacillus_phage(25.0%) NA NA
DBSCAN-SWA_134 1668399 : 1677075 7 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_135 1680652 : 1683488 2 Tupanvirus(50.0%) transposase NA
DBSCAN-SWA_136 1689752 : 1690982 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_137 1694492 : 1695293 1 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_138 1701570 : 1703457 1 Salicola_phage(100.0%) NA NA
DBSCAN-SWA_139 1711125 : 1718774 5 Erysipelothrix_phage(33.33%) NA NA
DBSCAN-SWA_140 1738862 : 1739771 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_141 1753969 : 1754536 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_142 1761746 : 1767539 4 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_143 1772920 : 1774885 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_144 1779138 : 1780545 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_145 1783975 : 1792585 10 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_146 1798106 : 1828453 27 Bacillus_virus(27.27%) tRNA NA
DBSCAN-SWA_147 1832466 : 1836975 6 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_148 1844582 : 1853129 8 Streptomyces_phage(25.0%) protease NA
DBSCAN-SWA_149 1858327 : 1870905 12 Klosneuvirus(40.0%) tRNA NA
DBSCAN-SWA_150 1877607 : 1878618 1 Dinoroseobacter_phage(100.0%) NA NA
DBSCAN-SWA_151 1881619 : 1882321 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_152 1887210 : 1891084 2 Staphylococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage